Psyllid ID: psy14042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPSV
Secondary Structure (PSIPRED)
cccEEEEEccEEEEEEEccccHHHccccccEEEEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEcccccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccEEEEccccEEEEEccccEEEEEEEEEccccccEEEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEccccHHHHccccHHHHHHHHHHccccEEEEcHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccEEccccccEEEEEEccccEEEEEcccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mnqslqghsgkVRAIIWNEQyekltssdetGLIIVWMLykpsyhrvEQDVIRLHeegylrtrpaiIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQtggaqaaapwksnttLVRASAVIVGsvdgnriwgkefkktsmlgvqwtsDSQNLLFAIKGGQVHLYDYEGNFMNkvsmwsgpgsemGEIAALKYYLNRTSArslnkfegcpsv
Flexible Loop (DISEMBL)
mnqslqghsgkvRAIIWNEQYEkltssdetGLIIVWMLYKPSYHRVEQDVIRLHeegylrtrpaiIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGaqaaapwksnttlvRASAVivgsvdgnriwGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSarslnkfegcpsv
Low Complexity Region (SEG)
MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPSV
Disordered region (IsUnstruct)
***********VRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR***************
Disordered Region (DISOPRED)
MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI**************************************************LGVQW***************VHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPSV
Disordered Region (DISEMBL)
*********GKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR**********NLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV**********WKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPSV
Disordered Region (DISPRO)
*NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ**************TLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGC*S*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9P2L0	1181	WD repeat-containing prot	yes	N/A	0.243	0.049	0.551	4e-13
Q8BND3	1181	WD repeat-containing prot	yes	N/A	0.243	0.049	0.534	4e-13
A6N6J5	1170	WD repeat-containing prot	yes	N/A	0.243	0.049	0.534	4e-13
Q8IYK8	340	GTP-binding protein REM 2	no	N/A	0.407	0.285	0.381	1e-12
Q9WTY2	341	GTP-binding protein REM 2	no	N/A	0.554	0.387	0.321	2e-12
Q8VEL9	341	GTP-binding protein REM 2	no	N/A	0.554	0.387	0.314	5e-12
Q5R541	296	GTP-binding protein GEM O	no	N/A	0.579	0.466	0.284	2e-11
P55040	296	GTP-binding protein GEM O	no	N/A	0.579	0.466	0.284	3e-11
P55041	295	GTP-binding protein GEM O	no	N/A	0.579	0.467	0.284	3e-11
O35929	297	GTP-binding protein REM 1	no	N/A	0.281	0.225	0.442	2e-10

>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
           AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNFM K+ +
Sbjct: 138 AVIVGSVDGNRIWGKDLKGIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKL 195

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.
Homo sapiens (taxid: 9606)

>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
           AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNF+ K+ +
Sbjct: 138 AVIVGSVDGNRIWGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKL 195

May promote CASP3 activation and TNF-stimulated apoptosis (By similarity). Required for ciliogenesis.

Mus musculus (taxid: 10090)

>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
           AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNF+ K+ +
Sbjct: 138 AVIVGSVDGNRIWGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKL 195

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q8IYK8|REM2_HUMAN GTP-binding protein REM 2 OS=Homo sapiens GN=REM2 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 192 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 251

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGG 128
             K IE S  +HHN  EL  G + QIRL+R     GG
Sbjct: 252 SCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGG 288

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.

Homo sapiens (taxid: 9606)

>sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicus GN=Rem2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 193 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 252

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQ--------AAAPWKSNTTLVR 143
             K IE S  +HHN  EL  G + QIRL+R     GG +         A P +  +   +
Sbjct: 253 SCKHIETSAALHHNTRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESLTKK 312

Query: 144 ASAVIVGSVDGNRIWGKEFKKTS 166
           A   +   V  N    K FK+ S
Sbjct: 313 AKRFLANLVPRN---AKFFKQRS 332

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.

Rattus norvegicus (taxid: 10116)

>sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus GN=Rem2 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  +  + +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 193 LIVFSVTDRRGFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 252

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQ--------AAAPWKSNTTLVR 143
             K IE S  +HHN  EL  G + QIRL+R     GG +         A P +  +   +
Sbjct: 253 SCKHIETSAALHHNTRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESLTKK 312

Query: 144 ASAVIVGSVDGNRIWGKEFKKTS 166
           A   +   V  N    K FK+ S
Sbjct: 313 AKRFLANLVPRN---AKFFKQRS 332

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.

Mus musculus (taxid: 10090)

>sp|Q5R541|GEM_PONAB GTP-binding protein GEM OS=Pongo abelii GN=GEM PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 154 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRTCAVVF 213

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS 151
             KFIE S  + HNV EL  GI+ Q+RL+R   +    + A   +  +   +A       
Sbjct: 214 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKA------- 266

Query: 152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH 189
               R WGK   K          +++N+ F +K    H
Sbjct: 267 ---RRFWGKIVAK----------NNKNMAFKLKSKSCH 291

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Pongo abelii (taxid: 9601)

>sp|P55040|GEM_HUMAN GTP-binding protein GEM OS=Homo sapiens GN=GEM PE=1 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 154 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 213

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS 151
             KFIE S  + HNV EL  GI+ Q+RL+R   +    + A   +  +   +A       
Sbjct: 214 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKA------- 266

Query: 152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH 189
               R WGK   K          +++N+ F +K    H
Sbjct: 267 ---RRFWGKIVAK----------NNKNMAFKLKSKSCH 291

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|P55041|GEM_MOUSE GTP-binding protein GEM OS=Mus musculus GN=Gem PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 153 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 212

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS 151
             KFIE S  + HNV EL  GI+ Q+RL+R   +    + A   +  +   +A       
Sbjct: 213 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRRESIPRKA------- 265

Query: 152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH 189
               R WGK   K          +++N+ F +K    H
Sbjct: 266 ---RRFWGKIVAK----------NNKNMAFKLKSKSCH 290

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|O35929|REM1_MOUSE GTP-binding protein REM 1 OS=Mus musculus GN=Rem1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           R H+  ++   P I+V NK DLAR R VS ++ +  A  F  KFIE S  + HNV EL  
Sbjct: 180 RTHQANHV---PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVTELFE 236

Query: 112 GILNQIRLKR 121
           G++ Q+RL+R
Sbjct: 237 GVVRQLRLRR 246

Promotes endothelial cell sprouting and actin cytoskeletal reorganization (By similarity). May be involved in angiogenesis. May function in Ca(2+) signaling.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
357614949	218	hypothetical protein KGM_07645 [Danaus p	0.478	0.522	0.551	4e-27
312377347	150	hypothetical protein AND_11379 [Anophele	0.478	0.76	0.543	8e-26
322801215	185	hypothetical protein SINV_03260 [Solenop	0.516	0.664	0.492	2e-25
332028404	176	GTP-binding protein RAD [Acromyrmex echi	0.516	0.698	0.481	3e-25
158292837	412	AGAP005243-PA [Anopheles gambiae str. PE	0.478	0.276	0.551	7e-25
350408624	552	PREDICTED: hypothetical protein LOC10074	0.592	0.255	0.425	1e-23
340716148	552	PREDICTED: hypothetical protein LOC10064	0.592	0.255	0.425	1e-23
161077314	449	Rgk3, isoform C [Drosophila melanogaster	0.592	0.314	0.437	2e-23
386768382	421	Rgk3, isoform D [Drosophila melanogaster	0.672	0.380	0.403	2e-23
195486560	324	GE12184 [Drosophila yakuba] gi|194177657	0.521	0.382	0.492	3e-23

>gi|357614949|gb|EHJ69385.1| hypothetical protein KGM_07645 [Danaus plexippus]

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 86/116 (74%), Gaps = 2/116 (1%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           ++I  ++ K S+ R EQ++ RL +   LR+RPA++V NKIDLAR+RAVS+QD K LA ++
Sbjct: 76  VVIYSVVDKASFQRAEQELARLLDCDMLRSRPALLVGNKIDLARSRAVSTQDGKCLACTY 135

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAP--WKSNTTLVRAS 145
           K KFIEVSVGI+HNVDELLVGILNQIRLK+      G + ++P  W  +  +VRAS
Sbjct: 136 KAKFIEVSVGINHNVDELLVGILNQIRLKKQQYSADGGRESSPAHWYKSRGVVRAS 191

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377347|gb|EFR24197.1| hypothetical protein AND_11379 [Anopheles darlingi]

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 85/116 (73%), Gaps = 2/116 (1%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           L++  ++ K ++ R +Q +  LH+    R+RP I+VANKIDLAR+RAVS+QD K LA + 
Sbjct: 8   LVMFSVVDKATFSRADQLLNMLHDMDLSRSRPTILVANKIDLARSRAVSTQDGKCLACTH 67

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQ--AAAPWKSNTTLVRAS 145
           K+KFIEVSV I+HNVDELL GIL+QIRLKR L +  G +  +AA W  N ++VRAS
Sbjct: 68  KIKFIEVSVAINHNVDELLAGILSQIRLKRELAELQGTREPSAAHWYKNRSVVRAS 123

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801215|gb|EFZ21905.1| hypothetical protein SINV_03260 [Solenopsis invicta]

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 91/130 (70%), Gaps = 7/130 (5%)

Query: 20  QYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79
           + EK+   D   +++  ++ K S+ R E+ + RLH++  LR RPAI+V NK+DL R+R V
Sbjct: 32  ELEKMPLPD-AFVVMYSVIDKASFQRAEEYLARLHDQDLLRARPAILVGNKVDLVRSRVV 90

Query: 80  SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ----TGGAQAAAPW 135
           S QD K LA +++ KF+EVSV I+HNVDELLVGILNQIRLK  +VQ    +GG++ +A W
Sbjct: 91  SPQDGKCLACTYRAKFVEVSVAINHNVDELLVGILNQIRLK--VVQENRNSGGSEGSAHW 148

Query: 136 KSNTTLVRAS 145
             +  +VRAS
Sbjct: 149 YKSRGVVRAS 158

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028404|gb|EGI68448.1| GTP-binding protein RAD [Acromyrmex echinatior]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 92/133 (69%), Gaps = 10/133 (7%)

Query: 20  QYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79
           + EK+   D   +++  ++ K S+ R E+ + RLH++  LR +PAI+V NK+DL R+R V
Sbjct: 20  ELEKMPLPD-AFVVMYSVIDKASFQRAEEYLARLHDQDLLRGKPAILVGNKVDLVRSRVV 78

Query: 80  SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ-------TGGAQAA 132
           S QD K LA +++ KFIEVSVGI+HNVDELLVGILNQIRLK  ++Q       +GG++ +
Sbjct: 79  SPQDGKCLACTYRAKFIEVSVGINHNVDELLVGILNQIRLK--VIQSNQENRNSGGSEGS 136

Query: 133 APWKSNTTLVRAS 145
           A W  +  +VRAS
Sbjct: 137 AHWYKSRGVVRAS 149

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292837|ref|XP_314147.4| AGAP005243-PA [Anopheles gambiae str. PEST] gi|157017180|gb|EAA09351.4| AGAP005243-PA [Anopheles gambiae str. PEST]

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 84/116 (72%), Gaps = 2/116 (1%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           L++  ++ K ++ R +Q +  LH+    R+RP I+VANKIDLAR+RAVSSQD K LA + 
Sbjct: 270 LVVYSVVDKATFSRADQLLNMLHDMDVSRSRPTILVANKIDLARSRAVSSQDGKCLACTH 329

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR--SLVQTGGAQAAAPWKSNTTLVRAS 145
           K+KFIEVSV I+HNVDELL GIL+QIRLKR  S VQ     ++A W  N ++VRAS
Sbjct: 330 KIKFIEVSVAINHNVDELLAGILSQIRLKREQSAVQGIREPSSAHWYKNRSVVRAS 385

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408624|ref|XP_003488465.1| PREDICTED: hypothetical protein LOC100746374 [Bombus impatiens]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 7/148 (4%)

Query: 5   LQGHSGKVRAI-IWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
           L G   ++R + + N + E      +  +I+  ++ K S+ R E+ + RLH++ +LR + 
Sbjct: 185 LNGEESELRFLNVANPKTELENIHPDAFVIMYSVIDKASFQRAEEYLERLHDQDFLRGKS 244

Query: 64  AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK--- 120
           AI+V NK+DL R+R VSSQD K +A +++VKFIEVSVGI+HNVD LLVGILNQIRLK   
Sbjct: 245 AILVGNKVDLVRSRVVSSQDGKCMACTYRVKFIEVSVGINHNVDHLLVGILNQIRLKNVQ 304

Query: 121 ---RSLVQTGGAQAAAPWKSNTTLVRAS 145
               +    G ++ +  W  +  +VRAS
Sbjct: 305 GNAENRTGNGASEGSGHWYKSRGVVRAS 332

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716148|ref|XP_003396563.1| PREDICTED: hypothetical protein LOC100645082 [Bombus terrestris]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 7/148 (4%)

Query: 5   LQGHSGKVRAI-IWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
           L G   ++R + + N + E      +  +I+  ++ K S+ R E+ + RLH++ +LR + 
Sbjct: 185 LNGEESELRFLNVANPKTELENIHPDAFVIMYSVIDKASFQRAEEYLERLHDQDFLRGKS 244

Query: 64  AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK--- 120
           AI+V NK+DL R+R VSSQD K +A +++VKFIEVSVGI+HNVD LLVGILNQIRLK   
Sbjct: 245 AILVGNKVDLVRSRVVSSQDGKCMACTYRVKFIEVSVGINHNVDHLLVGILNQIRLKNVQ 304

Query: 121 ---RSLVQTGGAQAAAPWKSNTTLVRAS 145
               +    G ++ +  W  +  +VRAS
Sbjct: 305 GNAENRTGNGASEGSGHWYKSRGVVRAS 332

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077314|ref|NP_001097395.1| Rgk3, isoform C [Drosophila melanogaster] gi|157400429|gb|ABV53867.1| Rgk3, isoform C [Drosophila melanogaster]

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 3/144 (2%)

Query: 5   LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
           L G   +++ +  N + +      +  L++   + K S+ R +Q + RL +   LR RP 
Sbjct: 279 LNGTESELKFLTGNPESKDELEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPT 338

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124
           I+VANKIDLAR+RAVS+QD K +A +F  KFIEVSVGI+HN DELL G L QIRLK+  V
Sbjct: 339 ILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQV 398

Query: 125 QTGG---AQAAAPWKSNTTLVRAS 145
           Q  G   A + A W  + +++ AS
Sbjct: 399 QLQGPRDANSPAHWYKSRSVMLAS 422

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386768382|ref|NP_001097396.2| Rgk3, isoform D [Drosophila melanogaster] gi|262272126|gb|ACY40038.1| MIP07271p [Drosophila melanogaster] gi|383302624|gb|ABV53868.2| Rgk3, isoform D [Drosophila melanogaster]

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 16/176 (9%)

Query: 5   LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
           L G   +++ +  N + +      +  L++   + K S+ R +Q + RL +   LR RP 
Sbjct: 251 LNGTESELKFLTGNPESKDELEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPT 310

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124
           I+VANKIDLAR+RAVS+QD K +A +F  KFIEVSVGI+HN DELL G L QIRLK+  V
Sbjct: 311 ILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQV 370

Query: 125 QTGG---AQAAAPWKSNTTLVRASAVIVGSVDGNR----IWGKE---FKKTSMLGV 170
           Q  G   A + A W       ++ +V++ S+   +    I GKE   FK    L V
Sbjct: 371 QLQGPRDANSPAHW------YKSRSVMLASMKARQMLTWILGKEDSKFKHCENLQV 420

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195486560|ref|XP_002091556.1| GE12184 [Drosophila yakuba] gi|194177657|gb|EDW91268.1| GE12184 [Drosophila yakuba]

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 4/128 (3%)

Query: 21  YEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80
           +++L  +D   L++   + K S+ R +Q + RL +   LR RP I+VANKIDLAR+RAVS
Sbjct: 171 FDELEQAD-AFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPIILVANKIDLARSRAVS 229

Query: 81  SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGG---AQAAAPWKS 137
           +QD K LA +F  KFIEVSVGI+HN DELL G L QIRLK+  VQ  G   A + A W  
Sbjct: 230 AQDGKCLACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKEHVQLQGPRDANSPAHWYK 289

Query: 138 NTTLVRAS 145
           + +++ AS
Sbjct: 290 SRSVMLAS 297

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
ZFIN|ZDB-GENE-060810-148	1203	wdr35 "WD repeat domain 35" [D	0.243	0.048	0.603	2e-29
UNIPROTKB|Q9P2L0	1181	WDR35 "WD repeat-containing pr	0.243	0.049	0.551	2.1e-28
RGD|1564116	1170	Wdr35 "WD repeat domain 35" [R	0.243	0.049	0.534	5.5e-28
MGI|MGI:1921932	1181	Wdr35 "WD repeat domain 35" [M	0.243	0.049	0.534	5.7e-28
UNIPROTKB|E1BWD7	1180	WDR35 "Uncharacterized protein	0.243	0.049	0.568	1.9e-27
UNIPROTKB|F1SCU2	1186	WDR35 "Uncharacterized protein	0.243	0.048	0.534	3.4e-26
FB|FBgn0035264	1205	Oseg4 "Oseg4" [Drosophila mela	0.390	0.077	0.421	1.2e-25
FB|FBgn0085426	449	Rgk3 "Rad, Gem/Kir family memb	0.588	0.311	0.455	9.3e-24
FB|FBgn0085419	740	Rgk2 "Rad, Gem/Kir family memb	0.407	0.131	0.5	8.4e-18
UNIPROTKB|Q8IYK8	340	REM2 "GTP-binding protein REM	0.407	0.285	0.381	2.4e-11

ZFIN|ZDB-GENE-060810-148 wdr35 "WD repeat domain 35" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGKE K T +  V W+ DS+ LLF +  G++H+YD +GNF+ K+SM
Sbjct:   138 AVIVGSVDGNRIWGKELKGTQLAHVAWSPDSKILLFGMANGEIHIYDNQGNFIMKMSM 195

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9P2L0 WDR35 "WD repeat-containing protein 35" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNFM K+ +
Sbjct:   138 AVIVGSVDGNRIWGKDLKGIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKL 195

GO:0030991 "intraflagellar transport particle A" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

RGD|1564116 Wdr35 "WD repeat domain 35" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNF+ K+ +
Sbjct:   138 AVIVGSVDGNRIWGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKL 195

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0030991 "intraflagellar transport particle A" evidence=ISO;ISS

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

MGI|MGI:1921932 Wdr35 "WD repeat domain 35" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNF+ K+ +
Sbjct:   138 AVIVGSVDGNRIWGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKL 195

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|E1BWD7 WDR35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGK+ K T +  V W+SDS+ LLF +  G++H+YD  GNF+ K+ +
Sbjct:   140 AVIVGSVDGNRIWGKDLKGTHLCHVAWSSDSKVLLFGMANGEIHIYDSNGNFIVKMKL 197

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|F1SCU2 WDR35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query:   146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSM 203
             AVIVGSVDGNRIWGK+ K   +  V W++DS+ LLF +  G++H+YD +GNF+ K+ +
Sbjct:   142 AVIVGSVDGNRIWGKDLKGIQLCHVAWSADSKILLFGMANGEIHIYDNQGNFIMKMKL 199

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

FB|FBgn0035264 Oseg4 "Oseg4" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 43/102 (42%), Positives = 63/102 (61%)

Query:   131 AAAPWKSNTTLV----RASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGG 186
             A+  W S+ + +       A+IVGSVDGNRI+GKE K T + GVQW+ D++ +LFA+  G
Sbjct:   120 ASMSWTSDGSRICIVYEDGAIIVGSVDGNRIFGKELKGTHLTGVQWSPDNRLILFALANG 179

Query:   187 QVHLYDYEGNFMNKVSMW----SGPGSEMGE-IAALKYYLNR 223
             + HLYD +GNF  K+ +     SG  S  G  IA++ ++  R
Sbjct:   180 ECHLYDNQGNFAMKLHIQCVNISGGSSSRGHRIASICWFSGR 221

GO:0003674 "molecular_function" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0085426 Rgk3 "Rad, Gem/Kir family member 3" [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 9.3e-24, P = 9.3e-24
 Identities = 66/145 (45%), Positives = 92/145 (63%)

Query:     5 LQGHSGKVRAIIWN-EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
             L G   +++ +  N E  ++L  +D   L++   + K S+ R +Q + RL +   LR RP
Sbjct:   279 LNGTESELKFLTGNPESKDELEQADAF-LVVYSCIDKESFTRAKQILSRLQDMDLLRHRP 337

Query:    64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123
              I+VANKIDLAR+RAVS+QD K +A +F  KFIEVSVGI+HN DELL G L QIRLK+  
Sbjct:   338 TILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQ 397

Query:   124 VQTGG---AQAAAPWKSNTTLVRAS 145
             VQ  G   A + A W  + +++ AS
Sbjct:   398 VQLQGPRDANSPAHWYKSRSVMLAS 422

GO:0005525 "GTP binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003924 "GTPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

FB|FBgn0085419 Rgk2 "Rad, Gem/Kir family member 2" [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 49/98 (50%), Positives = 67/98 (68%)

Query:    24 LTSSDETGLIIVWMLYKPSYHRVEQDVIR-LHEEGYLRTRPAIIVANKIDLARARAVSSQ 82
             L++ +  G ++V+ +   S  RV +++I  L +E Y + +  I+V NK DLARAR ++SQ
Sbjct:   595 LSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARLITSQ 654

Query:    83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
             + K LAAS   KFIE S GI HNVDELLVGIL Q+RLK
Sbjct:   655 EGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLK 692

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8IYK8 REM2 "GTP-binding protein REM 2" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 37/97 (38%), Positives = 55/97 (56%)

Query:    32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
             LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct:   192 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 251

Query:    92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGG 128
               K IE S  +HHN  EL  G + QIRL+R     GG
Sbjct:   252 SCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGG 288

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	6e-27
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-13
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-12
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-12
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-09
pfam00071	162	pfam00071, Ras, Ras family	1e-09
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-09
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-09
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-08
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	5e-08
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	9e-08
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-07
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-07
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-07
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-07
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-07
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	9e-07
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-06
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-06
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-06
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-06
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-06
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	7e-06
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-06
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	4e-05
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	5e-05
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-05
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	7e-05
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-04
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-04
cd01898	170	cd01898, Obg, Obg GTPase	3e-04
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	4e-04
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-04
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-04
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	0.001
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	0.001
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.002
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	0.004

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  102 bits (257), Expect = 6e-27
 Identities = 35/93 (37%), Positives = 50/93 (53%)

Query: 42  SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVG 101
           S+ +  +  I+L         P I+V NK DL R+R VS Q+ +  A  F  KFIE S  
Sbjct: 87  SFEKASELRIQLRRARQAEDIPIILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAA 146

Query: 102 IHHNVDELLVGILNQIRLKRSLVQTGGAQAAAP 134
           + HNVDEL  GI+ Q+RL+R   +    + A+ 
Sbjct: 147 LQHNVDELFEGIVRQVRLRRDSKEKNTRRMASR 179

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 63.7 bits (156), Expect = 9e-13
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 21/108 (19%)

Query: 19  EQYEKLTSSDETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYLRTR-----PAIIVAN 69
           +QY  + + D  G I+V   Y    + S+  ++     + E+  LR +     P ++V N
Sbjct: 65  DQY--IRNGD--GFILV---YSITSRESFEEIK----NIREQ-ILRVKDKEDVPIVLVGN 112

Query: 70  KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           K DL   R VS+++ + LA  +   F+E S   + N+DEL   ++ +I
Sbjct: 113 KCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 48  QDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102
           +++ +  E+  LR +     P ++V NK DL   R VS+++ K LA  +   F+E S   
Sbjct: 90  EEIAKFREQ-ILRVKDRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKE 148

Query: 103 HHNVDELLVGILNQIRLK 120
             NVDE    ++ +IR  
Sbjct: 149 RINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 48  QDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102
           +++ +  E+  LR +     P ++V NK DL   R VS+++ K LA  +   F+E S   
Sbjct: 88  EEIKKFREQ-ILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKE 146

Query: 103 HHNVDELLVGILNQIR 118
             NVDE    ++ +IR
Sbjct: 147 RVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 21/113 (18%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
           KV+  IW+    E++  +TSS      G I+V   Y    + S+  ++    ++      
Sbjct: 48  KVKLQIWDTAGQERFRSITSSYYRGAHGAILV---YDVTNRESFENLDKWLNELKEYAPP 104

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
                 P I+V NK DL   R VS+++A+  A    + F E S     NVDE 
Sbjct: 105 NI----PIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEA 153

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 8   HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKP-SYHRVE---QDVIRLHEE 56
               V+  IW+    E++  L         G ++V+ +    S+  V+   ++++R  +E
Sbjct: 44  DGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE 103

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                 P ++V NK DL   R VS+++ + LA    + F+E S   + NV+E    +  +
Sbjct: 104 NV----PIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELARE 159

Query: 117 IR 118
           I 
Sbjct: 160 IL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 19  EQYEKLTSSDETGLIIVWMLYKP-SYHRVEQDVIRLHEEGYLRTR-----PAIIVANKID 72
           EQY +       G ++V+ +    S+  V+    + H +  LR +     P I+V NK D
Sbjct: 68  EQYMRTGE----GFLLVFSVTDRGSFEEVD----KFHTQ-ILRVKDRDEFPMILVGNKAD 118

Query: 73  LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           L   R VS ++ + LA   K+ +IE S     NVD+    ++  IR
Sbjct: 119 LEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR VS++  ++LA S+ + +IE S      V+E    ++ +IR
Sbjct: 108 PMVLVGNKCDLA-ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
           ++V NK DL+  R VS+++ +  A      FIE S    HNV +L
Sbjct: 109 VLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQL 153

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 13/126 (10%)

Query: 2   NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKP-SYHRVEQ--DVI 51
            +++Q     ++A IW+    E+Y  +TS+      G ++V+ + K  ++  VE+    +
Sbjct: 42  TRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKEL 101

Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           R H +  +     ++V NK DL   RAV +++AK  A    + FIE S     NV+E   
Sbjct: 102 RDHADSNI---VIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFK 158

Query: 112 GILNQI 117
            +L +I
Sbjct: 159 QLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P ++V NK+DL + R V++++ +NLA  F   F E S  +   +D+   G++ +IR K S
Sbjct: 109 PLVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKES 168

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           P ++V NK DL   R VS+++ K LA S+   F+E S   + NV+E    ++ +I
Sbjct: 108 PIVLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 19  EQYEKLTSS---DETGLIIVWMLY-KPSYHRVE---QDVIRLHEEGYLRTRPAIIVANKI 71
           E+Y  L      +  G I+V+ +  + ++ RVE   + + R+ +E      P +IV NK 
Sbjct: 58  EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADV-PIMIVGNKC 116

Query: 72  DLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQA 131
           D    R VS+++   LA     +FIE S   + NV+     ++  +R +R   Q G    
Sbjct: 117 DKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR---QGGQGPK 173

Query: 132 AAPWK 136
             P K
Sbjct: 174 GGPTK 178

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
           +V+  IW+    E++  +TSS      G ++V   Y    + S+  +E  +  L E    
Sbjct: 48  RVKLQIWDTAGQERFRSITSSYYRGAVGALLV---YDITNRESFENLENWLKELREYASP 104

Query: 60  RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
                ++V NK DL   R VS ++A+  A    + F E S   + NV+E    +  +I
Sbjct: 105 NV-VIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 15/114 (13%)

Query: 16  IWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRLHEEGYLRTRPA 64
           IW+    E++  +TSS      G+IIV+ +  + S++ V+Q   ++ R   E   +    
Sbjct: 55  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---- 110

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           ++V NK DL   + V   +AK  A    + F+E S     NV+E  + +  +I+
Sbjct: 111 LLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIK 164

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P I+V NK DL   R VS+ + + LA SF + F+E S     NVDE    ++ +IR
Sbjct: 112 PMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167

Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105
           P I+V NK DL  +R VS+++ + LA      F EVS   ++ 
Sbjct: 109 PVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL   R VS ++A NLA  + V ++E S     NVD++   ++ +IR
Sbjct: 107 PLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 31  GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAK 85
           G I+V+ L      +  QD I+   +  +R +     P I+V NK+DL   R VSS + +
Sbjct: 75  GFIVVYSL---VNQQTFQD-IKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGR 130

Query: 86  NLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
            LA  +   F+E S      V+EL   I+ Q+
Sbjct: 131 ALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
           P ++V NK D + +R VSS +   LA ++   F+E S   +HNV EL   +LN
Sbjct: 110 PIMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLN 162

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 49  DVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIH 103
           D+  L E+  LR +     P I+V NK DL   R V  +  +NLA  +   F+E S    
Sbjct: 90  DLQDLREQ-ILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148

Query: 104 HNVDELLVGILNQI 117
            NV+E+   ++ QI
Sbjct: 149 INVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
           ++V NK D+   R VS ++ + LA  + +KF+E S   + NV+E  + +   I  K
Sbjct: 112 MLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQI 117
           P I+V NK DL   R VS ++ +NLA  +    F+E S     NVDE+   ++ QI
Sbjct: 108 PMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +IV NKIDL R R VS  +A+  A S   K  E S      ++EL + +  ++
Sbjct: 109 VIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
            +  NK DL   R VS+++A+  A    + F+E S     NV+EL   I
Sbjct: 110 ALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           ++LQ     V+A IW+    E+Y  +TS+   G +   ++Y  +  +   +V R   E  
Sbjct: 52  RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE-- 109

Query: 59  LRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
           LR         ++  NK DL   R+V+ +D + LA    + F+E S     NV++    I
Sbjct: 110 LRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Query: 114 LN---QIRLKRSLVQTGGAQAAAPWKSNTTL 141
           L     I  K++L     A  +      TT+
Sbjct: 170 LLEIYHIISKKALAAQEAAANSGLPGQGTTI 200

Length = 216

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLA---ASFKVKFIEVSVGIHHNVDELL 110
           L  RP I+VANK+DL  A        +NL         K   +S      +DELL
Sbjct: 272 LLERPQIVVANKMDLPEA-------EENLEEFKEKLGPKVFPISALTGQGLDELL 319

Length = 424

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           ++ ANKIDL + RAVS  + +  A S   K+ E S      V+E+   + + I
Sbjct: 114 VVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 17/64 (26%), Positives = 25/64 (39%)

Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           L  +P I+V NKIDL        + A    A+       +S      +DELL  +   + 
Sbjct: 269 LADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328

Query: 119 LKRS 122
             R 
Sbjct: 329 EARR 332

Length = 335

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL   R VS +D  +L+  +  V F E S     NVDE+ + ++ QI 
Sbjct: 108 PMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 5   LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEE 56
             G + +V   +W+    E++  LT++   D  G ++++ L  + S+  V   + +L   
Sbjct: 56  TSGKAFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAH 115

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD---ELLVGI 113
            Y      +++ NK DL   R VS + A+ LA  + + + E S     NV+   E L+ +
Sbjct: 116 AYCENPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 175

Query: 114 LNQ 116
           + +
Sbjct: 176 IMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 46  VEQDVIRLHEE--GY---LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV 100
             +D   +  E   Y   L  +P I+V NKIDL  A     +  + L      K   +S 
Sbjct: 94  PVEDYETIRNELEAYNPGLAEKPRIVVLNKIDLLDAEERFEKLKELLKELKGKKVFPISA 153

Query: 101 GIHHNVDELLVGILNQI 117
                +DELL  +   +
Sbjct: 154 LTGEGLDELLKKLAKLL 170

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 58  YLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQ 116
            L  +P I+V NKIDL        +  K LA +     F  +S      +DELL  +   
Sbjct: 272 KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL 331

Query: 117 I 117
           +
Sbjct: 332 L 332

Length = 369

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
           P ++V  KIDL     +++++A+ LA   ++     SV    NV EL
Sbjct: 108 PMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTEL 154

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 31  GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR-PAIIVANKIDLARARAVSSQD-AKNLA 88
            +++V      +    E+D   L      +   P I+V NKIDL   R V      + LA
Sbjct: 78  LILLV---VDSTDRESEEDAKLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELA 134

Query: 89  ASFKVKFIEVSVGIHHNVDELLVGILN 115
               V   EVS      VDEL   ++ 
Sbjct: 135 KILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV 100
           P ++V NK DL   R V +  A+ LA +  +KF E S 
Sbjct: 112 PGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSA 149

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
           K+R  IW+    E++  +TS+      G+I+V+ + K          +++ ++       
Sbjct: 48  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 107

Query: 64  AIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
            ++V NK+D    R ++ Q  +  A     ++F E S   + NVDE+ + +++ I  K  
Sbjct: 108 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167

Query: 123 L 123
           L
Sbjct: 168 L 168

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTR 62
           K++  IW+    E++  +T S       LI+ + +  + S+ R   + +R  E+      
Sbjct: 55  KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYANNKV 113

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
             I+V NKIDLA  R VS Q A+  + +  + ++E S     NV++L + +
Sbjct: 114 ITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           +++ NK DLA  RAVS+++ +  A    + F+E S     NV+E  +
Sbjct: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161

Length = 210

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG0084|consensus	205		99.94
KOG0098|consensus	216		99.94
KOG0092|consensus	200		99.93
KOG0078|consensus	207		99.93
KOG2041|consensus	1189		99.93
KOG0094|consensus	221		99.92
KOG0083|consensus	192		99.91
KOG0080|consensus	209		99.9
KOG0087|consensus	222		99.9
KOG0079|consensus	198		99.9
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.9
KOG0093|consensus	193		99.9
KOG0394|consensus	210		99.9
KOG0088|consensus	218		99.9
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.89
KOG0086|consensus	214		99.88
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.88
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.88
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.87
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.87
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.87
KOG0091|consensus	213		99.86
KOG0081|consensus	219		99.86
PTZ00099	176	rab6; Provisional	99.86
KOG0095|consensus	213		99.86
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.86
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.85
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.84
KOG0097|consensus	215		99.84
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.84
KOG0395|consensus	196		99.84
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.84
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.83
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.83
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.83
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.83
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.83
PTZ00369	189	Ras-like protein; Provisional	99.83
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.83
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.83
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.82
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.82
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.82
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.82
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.81
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.81
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.81
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.81
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.81
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.81
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.8
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.8
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.8
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.8
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.8
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.79
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.79
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.79
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.79
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.79
PLN03110	216	Rab GTPase; Provisional	99.79
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.79
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.78
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.78
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.78
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.78
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.78
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.78
PLN03108	210	Rab family protein; Provisional	99.77
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.77
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.77
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.77
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.77
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.77
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.77
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.76
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.76
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.76
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.76
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.75
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.75
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.75
PLN03118	211	Rab family protein; Provisional	99.75
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.75
KOG0393|consensus	198		99.74
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.74
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.73
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.72
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.72
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.72
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.72
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.72
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.72
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.71
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.69
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.69
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.68
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.68
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.67
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.66
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.65
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.65
PLN00223	181	ADP-ribosylation factor; Provisional	99.64
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.63
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.63
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.62
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.62
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.62
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.6
PTZ00133	182	ADP-ribosylation factor; Provisional	99.6
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.59
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.59
PRK12297	424	obgE GTPase CgtA; Reviewed	99.56
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.55
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.55
PRK12296	500	obgE GTPase CgtA; Reviewed	99.54
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.52
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.52
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.52
KOG4252|consensus	246		99.52
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.51
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.51
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.49
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.44
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.44
PRK12299	335	obgE GTPase CgtA; Reviewed	99.44
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.43
PLN00023	334	GTP-binding protein; Provisional	99.41
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.41
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.4
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.39
KOG0073|consensus	185		99.38
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.34
KOG0070|consensus	181		99.31
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.28
KOG1673|consensus	205		99.28
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.28
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.23
KOG3883|consensus	198		99.23
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.22
KOG0075|consensus	186		99.19
COG1100	219	GTPase SAR1 and related small G proteins [General	99.19
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.18
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.18
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.18
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.17
KOG0096|consensus	216		99.16
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.16
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.15
PRK03003	472	GTP-binding protein Der; Reviewed	99.09
KOG4423|consensus	229		99.08
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.06
KOG0071|consensus	180		99.06
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.04
PRK04213	201	GTP-binding protein; Provisional	99.03
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.0
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.99
KOG0076|consensus	197		98.98
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.98
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.97
PRK15494	339	era GTPase Era; Provisional	98.96
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.94
KOG0072|consensus	182		98.94
cd00881	189	GTP_translation_factor GTP translation factor fami	98.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.91
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.86
PRK05433	600	GTP-binding protein LepA; Provisional	98.86
PRK03003	472	GTP-binding protein Der; Reviewed	98.85
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.8
PRK11058	426	GTPase HflX; Provisional	98.8
PRK12288	347	GTPase RsgA; Reviewed	98.78
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.77
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.77
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.77
PRK00098	298	GTPase RsgA; Reviewed	98.76
PRK12298	390	obgE GTPase CgtA; Reviewed	98.76
PRK12289	352	GTPase RsgA; Reviewed	98.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.73
CHL00189	742	infB translation initiation factor 2; Provisional	98.72
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.72
PRK05306	787	infB translation initiation factor IF-2; Validated	98.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.7
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.69
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.68
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.68
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.64
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.59
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.57
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.57
PRK00093	435	GTP-binding protein Der; Reviewed	98.56
PRK12317	425	elongation factor 1-alpha; Reviewed	98.56
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.55
PRK00089	292	era GTPase Era; Reviewed	98.53
KOG0074|consensus	185		98.53
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.52
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.51
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.5
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.5
PRK00093	435	GTP-binding protein Der; Reviewed	98.49
PRK10218	607	GTP-binding protein; Provisional	98.47
KOG1489|consensus	366		98.45
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.45
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.43
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.41
COG0536	369	Obg Predicted GTPase [General function prediction	98.37
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.37
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.37
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.31
PRK14845	1049	translation initiation factor IF-2; Provisional	98.29
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.29
KOG1707|consensus	625		98.27
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.27
PRK04004	586	translation initiation factor IF-2; Validated	98.25
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.24
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.22
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.19
PRK12736	394	elongation factor Tu; Reviewed	98.18
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.17
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.15
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.14
KOG0462|consensus	650		98.13
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.13
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.12
PRK13796	365	GTPase YqeH; Provisional	98.11
COG2229	187	Predicted GTPase [General function prediction only	98.1
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.09
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.08
PRK01889	356	GTPase RsgA; Reviewed	98.05
COG2262	411	HflX GTPases [General function prediction only]	98.05
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.05
COG1159	298	Era GTPase [General function prediction only]	97.98
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.97
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.97
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.94
PRK12735	396	elongation factor Tu; Reviewed	97.93
PLN00043	447	elongation factor 1-alpha; Provisional	97.88
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.87
COG1160	444	Predicted GTPases [General function prediction onl	97.86
KOG1145|consensus	683		97.86
PRK09866	741	hypothetical protein; Provisional	97.85
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.85
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.82
KOG0705|consensus	749		97.79
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.77
COG0486	454	ThdF Predicted GTPase [General function prediction	97.74
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.74
COG1162	301	Predicted GTPases [General function prediction onl	97.72
KOG0077|consensus	193		97.72
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.71
PRK13351	687	elongation factor G; Reviewed	97.67
COG1160	444	Predicted GTPases [General function prediction onl	97.64
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	97.63
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.61
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.59
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.57
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.56
KOG1423|consensus	379		97.55
PRK13768	253	GTPase; Provisional	97.49
CHL00071	409	tufA elongation factor Tu	97.47
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.47
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.46
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	97.43
PRK12740	668	elongation factor G; Reviewed	97.42
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.41
PRK00049	396	elongation factor Tu; Reviewed	97.38
PLN03126	478	Elongation factor Tu; Provisional	97.34
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.29
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.26
PLN03127	447	Elongation factor Tu; Provisional	97.24
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.13
KOG1490|consensus	620		97.1
COG0218	200	Predicted GTPase [General function prediction only	97.09
KOG0273|consensus	524		97.05
PTZ00141	446	elongation factor 1- alpha; Provisional	96.99
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	96.98
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.93
KOG1707|consensus	625		96.93
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.92
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.87
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.86
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.83
KOG0271|consensus	480		96.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	96.67
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.63
PRK12739	691	elongation factor G; Reviewed	96.59
KOG1144|consensus	1064		96.55
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.5
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.49
COG1084	346	Predicted GTPase [General function prediction only	96.49
COG1217	603	TypA Predicted membrane GTPase involved in stress	96.48
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.48
KOG0283|consensus	712		96.37
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.2
KOG0647|consensus	347		96.02
KOG1532|consensus	366		95.9
COG1163	365	DRG Predicted GTPase [General function prediction	95.89
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	95.87
COG1161	322	Predicted GTPases [General function prediction onl	95.77
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	95.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.71
KOG1191|consensus	531		95.33
PF09439	181	SRPRB: Signal recognition particle receptor beta s	95.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.99
PRK00007	693	elongation factor G; Reviewed	94.86
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	94.82
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	94.72
KOG0302|consensus	440		94.69
PRK07560	731	elongation factor EF-2; Reviewed	94.58
COG0050	394	TufB GTPases - translation elongation factors [Tra	94.55
COG3596	296	Predicted GTPase [General function prediction only	94.36
KOG0461|consensus	522		93.93
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	93.79
KOG3886|consensus	295		93.75
PRK09602	396	translation-associated GTPase; Reviewed	93.71
KOG0282|consensus	503		93.63
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	93.54
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	93.48
KOG3905|consensus	473		93.41
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	93.36
KOG4640|consensus	665		92.68
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	92.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	92.61
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	92.3
cd03110	179	Fer4_NifH_child This protein family's function is	92.19
KOG1424|consensus	562		92.14
KOG0458|consensus	603		91.93
COG5258	527	GTPBP1 GTPase [General function prediction only]	91.21
KOG0468|consensus	971		91.15
KOG0090|consensus	238		91.1
KOG0273|consensus	524		91.04
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	90.79
KOG1538|consensus	1081		90.76
KOG0082|consensus	354		90.63
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	90.41
KOG0466|consensus	466		89.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	89.9
KOG2106|consensus	626		89.8
KOG1274|consensus	933		89.68
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	89.64
KOG0305|consensus	484		89.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	89.18
PTZ00416	836	elongation factor 2; Provisional	89.13
KOG0284|consensus	464		88.22
KOG1446|consensus	311		88.16
PTZ00421	493	coronin; Provisional	87.75
KOG4273|consensus	418		87.58
KOG0288|consensus	459		87.55
KOG2484|consensus	435		87.53
KOG0266|consensus	456		87.52
KOG0286|consensus	343		87.48
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	87.13
PLN00116	843	translation elongation factor EF-2 subunit; Provis	86.82
KOG1143|consensus	591		86.8
PTZ00421	493	coronin; Provisional	86.53
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	86.41
KOG1523|consensus	361		86.19
KOG1273|consensus	405		86.12
PF09269	69	DUF1967: Domain of unknown function (DUF1967); Int	84.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	83.48
KOG1486|consensus	364		83.25
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	83.21
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	82.76
KOG0272|consensus	459		82.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	82.12
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	81.33

>KOG0084|consensus

Probab=99.94  E-value=1.8e-26  Score=185.82  Aligned_cols=123  Identities=23%  Similarity=0.467  Sum_probs=115.4

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .++++++|+.++|||||    ||||+++.+   +|+|+|+|||+ ++.||+++..|+.++.++. ..++|.+|||||+|+
T Consensus        48 ~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl  126 (205)
T KOG0084|consen   48 IRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDL  126 (205)
T ss_pred             EEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeecccc
Confidence            47899999999999999    999999988   99999999999 9999999999999999987 367899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042         74 ARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKRSLVQ  125 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~~~~~  125 (238)
                      .+.+.++.++++.++.+++++ |+|+||+.+.||++.|..++..+........
T Consensus       127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHV  179 (205)
T ss_pred             HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999999 9999999999999999999999987765443

>KOG0098|consensus

Probab=99.94  E-value=3.4e-26  Score=182.57  Aligned_cols=122  Identities=20%  Similarity=0.333  Sum_probs=114.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+|++.|+|+|||    |+|++++.+   +|.|+|||||+ .++||..+..|+.+++++. ..+..++|+|||+||+
T Consensus        46 r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~  124 (216)
T KOG0098|consen   46 RMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLE  124 (216)
T ss_pred             eEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhh
Confidence            5689999999999999    999999988   99999999999 9999999999999999975 3789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ  125 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~  125 (238)
                      ..|+|+.+|+++||+++|+.|+|+||+|++||+|+|..++..+....+...
T Consensus       125 ~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  125 ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGV  175 (216)
T ss_pred             ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999988766544

>KOG0092|consensus

Probab=99.93  E-value=6.8e-26  Score=181.85  Aligned_cols=122  Identities=22%  Similarity=0.361  Sum_probs=114.9

Q ss_pred             CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      |+|++.+++..|+|+|||    |||++|.+.   +|+++|+|||+ +.+||..++.|+.+|++..+ +++-+.|||||+|
T Consensus        43 ~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~D  121 (200)
T KOG0092|consen   43 LTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKAD  121 (200)
T ss_pred             EEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhh
Confidence            578999999999999999    999999988   99999999999 99999999999999998764 7788899999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      |.+.+++..+++..+|+..|+.|+|+|||||.||+++|..|++.++.....
T Consensus       122 L~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  122 LLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             hhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence            999999999999999999999999999999999999999999998776544

>KOG0078|consensus

Probab=99.93  E-value=6.4e-26  Score=184.75  Aligned_cols=119  Identities=24%  Similarity=0.468  Sum_probs=113.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      |+|++++..|++||||    |||+.++++   +|+++++|||+ ++.||+++..|+..+.++.+ .++|++|||||+|+.
T Consensus        52 kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~  130 (207)
T KOG0078|consen   52 KTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLE  130 (207)
T ss_pred             EEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeecccccc
Confidence            7899999999999999    999999988   99999999999 99999999999999998873 699999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      .+|+|+.+.++++|.++|++|+|+||++|.||++.|..|++.+.....
T Consensus       131 ~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~  178 (207)
T KOG0078|consen  131 EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLE  178 (207)
T ss_pred             ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999986443

>KOG2041|consensus

Probab=99.93  E-value=2.3e-27  Score=218.92  Aligned_cols=166  Identities=41%  Similarity=0.654  Sum_probs=147.6

Q ss_pred             CccEEEECCeEEEEEEEeCCCcccccCCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         1 ~~k~i~~~~~~v~l~iWDe~~~~l~~~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      |||+++.|+.+|++..|+|.+++|++++.+|+|+||.+..+|      |++++.     +++      ||+         
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs------W~EEMi-----NnR------nKS---------  116 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS------WCEEMI-----NNR------NKS---------  116 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc------HHHHHh-----hCc------Ccc---------
Confidence            899999999999999999999999999999999999995554      455543     445      888         


Q ss_pred             HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCceeeec
Q psy14042         81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGK  160 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rv~g~  160 (238)
                                       +.+...|+.+.-..+|+                           |++|.+|||+++|+|+|||
T Consensus       117 -----------------vV~SmsWn~dG~kIcIv---------------------------YeDGavIVGsvdGNRIwgK  152 (1189)
T KOG2041|consen  117 -----------------VVVSMSWNLDGTKICIV---------------------------YEDGAVIVGSVDGNRIWGK  152 (1189)
T ss_pred             -----------------EEEEEEEcCCCcEEEEE---------------------------EccCCEEEEeeccceecch
Confidence                             67777788888888888                           9999999999999999999


Q ss_pred             ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCC-CC-----ceeEEEEEeecCCCc--ccccccc
Q psy14042        161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPG-SE-----MGEIAALKYYLNRTS--ARSLNKF  232 (238)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~-~~-----~~~i~~~~w~~~~~~--~~~~~~~  232 (238)
                      +++...+..+.|++|...++|+.++||+|+||++|+|..||.+.|..+ +.     ..+|++++||.++.+  .+++|+|
T Consensus       153 eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l  232 (1189)
T KOG2041|consen  153 ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL  232 (1189)
T ss_pred             hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence            999888899999999999999999999999999999999999999655 33     345999999999885  7899999


Q ss_pred             cCCC
Q psy14042        233 EGCP  236 (238)
Q Consensus       233 ~~~~  236 (238)
                      ++|=
T Consensus       233 avcy  236 (1189)
T KOG2041|consen  233 AVCY  236 (1189)
T ss_pred             EEEE
Confidence            9993

>KOG0094|consensus

Probab=99.92  E-value=5.3e-25  Score=177.02  Aligned_cols=121  Identities=23%  Similarity=0.336  Sum_probs=114.1

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ++++.+.+.+|+||+||    ||||+|.++   +++++|+|||+ ++.||++..+|++.++++.+..++-++|||||.||
T Consensus        61 skt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL  140 (221)
T KOG0094|consen   61 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL  140 (221)
T ss_pred             EEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc
Confidence            57889999999999999    999999998   99999999999 99999999999999999887667889999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      .++++++.++++..|++++..|+++||++|.||.++|..|+..+++...
T Consensus       141 ~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  141 SDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             cchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            9999999999999999999999999999999999999999988876543

>KOG0083|consensus

Probab=99.91  E-value=1.2e-24  Score=165.33  Aligned_cols=119  Identities=26%  Similarity=0.479  Sum_probs=111.8

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ||.|..+++.|++||||    ||||+++..   +||+.+++||+ ++.||++.+.|+.+|.+|. ...+.+.|+|||+|+
T Consensus        37 nkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~  115 (192)
T KOG0083|consen   37 NKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDL  115 (192)
T ss_pred             cceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhcccccc
Confidence            68899999999999999    999999987   99999999999 9999999999999999886 367789999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..++.+..++++++++++++||.|+||+||.||+..|-.|++.+...+
T Consensus       116 a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  116 AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             chhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998886544

>KOG0080|consensus

Probab=99.90  E-value=7.6e-24  Score=165.43  Aligned_cols=121  Identities=23%  Similarity=0.367  Sum_probs=115.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      |.+.++|..++|-|||    ||||.|+++   +|.++|+|||+ .+++|.++..|.+++.-|...+++-.++||||+|.+
T Consensus        51 k~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke  130 (209)
T KOG0080|consen   51 KVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE  130 (209)
T ss_pred             EEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence            6789999999999999    999999999   99999999999 999999999999999999877888999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      .+|.|+.+++..+|+++++-|+|+||++.+||+..|+.++..|.+.+..
T Consensus       131 s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l  179 (209)
T KOG0080|consen  131 SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSL  179 (209)
T ss_pred             hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999999999999999999999999999877643

>KOG0087|consensus

Probab=99.90  E-value=1.7e-23  Score=170.27  Aligned_cols=122  Identities=26%  Similarity=0.392  Sum_probs=114.3

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ++++.++++.|+.||||    ||||.++++   +|.|+++|||+ .+.+|+++..|+.+|+.+.+ ++++++|||||+||
T Consensus        53 t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL  131 (222)
T KOG0087|consen   53 TRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDL  131 (222)
T ss_pred             eeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhh
Confidence            46889999999999999    999999988   99999999999 99999999999999998764 79999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      ...+.++.+++..+|+..+..|+|+||..+.||+.+|..++..|...-...
T Consensus       132 ~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  132 NHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKK  182 (222)
T ss_pred             hhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987765443

>KOG0079|consensus

Probab=99.90  E-value=5.9e-24  Score=163.98  Aligned_cols=117  Identities=23%  Similarity=0.444  Sum_probs=111.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.++|..|+|+|||    |+|+.+++.   +.+++++|||+ +.+||.+++.|++++++..  +..|-+|||||.|++
T Consensus        48 rTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~  125 (198)
T KOG0079|consen   48 RTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDP  125 (198)
T ss_pred             EEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCc
Confidence            6889999999999999    999999877   99999999999 9999999999999999887  689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +.+.+..++++.+|...|+.+||+||+...|++.+|.+|.+++...+
T Consensus       126 ~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  126 ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988766

>cd04121 Rab40 Rab40 subfamily

Probab=99.90  E-value=5.8e-23  Score=168.93  Aligned_cols=118  Identities=20%  Similarity=0.389  Sum_probs=108.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..++|++||    ++|+.++..   ++|++|+|||+ ++.||+.+..|+.++.++.  ++.|+||||||+||.
T Consensus        46 ~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~  123 (189)
T cd04121          46 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLA  123 (189)
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccch
Confidence            5678899999999999    889888765   99999999999 9999999999999998765  689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.++.++++.+++..+++|++|||++|.||+++|..+++.+.....
T Consensus       124 ~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         124 FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            888899999999999999999999999999999999999998876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0093|consensus

Probab=99.90  E-value=1.3e-23  Score=161.97  Aligned_cols=120  Identities=22%  Similarity=0.421  Sum_probs=111.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      |+|--+.+.|++||||    |+||.++..   +++++|++||+ +.+||..++.|...|+.+. ..+.|+|||||||||+
T Consensus        61 KTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd  139 (193)
T KOG0093|consen   61 KTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMD  139 (193)
T ss_pred             eEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCc
Confidence            5666678899999999    999999987   99999999999 9999999999999999875 4899999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ++|.++.+.++.++.++|+.|||+|||.+.||+++|..++..+-.+..+
T Consensus       140 ~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  140 SERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSE  188 (193)
T ss_pred             cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999888766543

>KOG0394|consensus

Probab=99.90  E-value=6.8e-23  Score=163.38  Aligned_cols=122  Identities=23%  Similarity=0.333  Sum_probs=111.5

Q ss_pred             CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEE
Q psy14042          1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVAN   69 (238)
Q Consensus         1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgN   69 (238)
                      ++|.+.+|+..+.|||||    |||++|...   +||++++|||+ ++.||+.+..|.+++..+..+   ..-|+||+||
T Consensus        47 ltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN  126 (210)
T KOG0394|consen   47 LTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN  126 (210)
T ss_pred             eeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence            589999999999999999    999999977   99999999999 999999999999998877543   4679999999


Q ss_pred             eccCCC--cccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         70 KIDLAR--ARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        70 K~DL~~--~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      |+|+..  .++++...+..+++.. ++||||+|||...||+++|..+++.+.....
T Consensus       127 KiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  127 KIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             cccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            999975  3899999999999886 4899999999999999999999999887764

>KOG0088|consensus

Probab=99.90  E-value=2.6e-23  Score=162.13  Aligned_cols=122  Identities=24%  Similarity=0.356  Sum_probs=114.2

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +|++.+.+....|.|||    |+|+.|.+.   +++++++|||+ |++||+.++.|..+++... .+.+-+++||||+||
T Consensus        52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDL  130 (218)
T KOG0088|consen   52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDL  130 (218)
T ss_pred             hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccH
Confidence            68889999999999999    999999988   99999999999 9999999999999998865 378889999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      ++++.++.++++..|+..|..|+++||+.+.||.++|..+...+.++....
T Consensus       131 EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~  181 (218)
T KOG0088|consen  131 EEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR  181 (218)
T ss_pred             HHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999888876543

>cd04120 Rab12 Rab12 subfamily

Probab=99.89  E-value=4.6e-22  Score=165.24  Aligned_cols=117  Identities=24%  Similarity=0.461  Sum_probs=106.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..++++|||    ++|+.++..   ++|++|+|||+ +++||+.+..|+..+.++. ..+.|++|||||+||.
T Consensus        40 ~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~  118 (202)
T cd04120          40 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCE  118 (202)
T ss_pred             EEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence            5688899999999999    899998876   99999999999 9999999999999987764 3679999999999999


Q ss_pred             CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..+++..+++.+++++. ++.|++|||++|.||+++|.++++.+...
T Consensus       119 ~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         119 TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            88899999999999885 89999999999999999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0086|consensus

Probab=99.88  E-value=1e-22  Score=158.01  Aligned_cols=124  Identities=21%  Similarity=0.283  Sum_probs=114.7

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ++-|.+.++.|+|||||    |+||+++.+   +|.++++|||+ +++||+.+..|+..++... ++++-++|+|||.||
T Consensus        48 SrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL  126 (214)
T KOG0086|consen   48 SRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDL  126 (214)
T ss_pred             ceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhc
Confidence            35678999999999999    999999988   99999999999 9999999999999998765 478889999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccccc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQT  126 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~  126 (238)
                      ..+++++..++.+++.+..+.+.|+||+||+||+|.|-..++.+..+.+....
T Consensus       127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl  179 (214)
T KOG0086|consen  127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL  179 (214)
T ss_pred             ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999887765543

>cd04133 Rop_like Rop subfamily

Probab=99.88  E-value=7.4e-22  Score=160.58  Aligned_cols=113  Identities=19%  Similarity=0.400  Sum_probs=101.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..++++|||    ++|+.++..   +++++|+|||+ ++.||+++ +.|+.++++..  .+.|++|||||+||
T Consensus        40 ~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl  117 (176)
T cd04133          40 ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDL  117 (176)
T ss_pred             EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence            4577899999999999    899988876   99999999999 99999998 78999998765  57999999999999


Q ss_pred             CCcc----------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARAR----------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~----------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .+++          .++.+++..+++..++ +|+||||++|.||+++|..+++.+
T Consensus       118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         118 RDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             ccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence            6543          4888999999999998 699999999999999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.88  E-value=7.5e-22  Score=161.35  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..++++|||    ++|+.+++.   ++|++|+|||+ ++.||+++ ..|+.++.++.  ++.|++|||||+||
T Consensus        44 ~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL  121 (182)
T cd04172          44 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL  121 (182)
T ss_pred             EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhh
Confidence            5678899999999999    788888766   99999999999 99999998 89999998875  67999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHH
Q psy14042         74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQI  117 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l  117 (238)
                      ..            .+.++.++++++|++.++ +|+||||++|.| |+++|..+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             hcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence            64            356899999999999996 899999999998 999999999754

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.87  E-value=2.8e-21  Score=156.21  Aligned_cols=119  Identities=23%  Similarity=0.406  Sum_probs=107.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.||+.+..|...+.+.....++|++|||||+|+.
T Consensus        41 ~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~  120 (172)
T cd04141          41 QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE  120 (172)
T ss_pred             EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence            4678899999999999    788888866   99999999999 999999999999888776544689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.++.+++..+++..+++|++|||++|.||+++|.++++.+....
T Consensus       121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999999998887543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04131 Rnd Rnd subfamily

Probab=99.87  E-value=3.6e-21  Score=156.69  Aligned_cols=113  Identities=15%  Similarity=0.231  Sum_probs=100.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..++++|||    ++|+.+.+.   ++|++|+|||+ +++||+++ ..|+.+++++.  ++.|++|||||+||
T Consensus        40 ~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL  117 (178)
T cd04131          40 ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDL  117 (178)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhh
Confidence            4678899999999999    788877766   99999999999 99999996 89999998876  68999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHH
Q psy14042         74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQI  117 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l  117 (238)
                      ..            .+.++.+++.+++++.++ +|+||||++|+| |+++|..+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             hcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence            64            246889999999999997 899999999995 999999999854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.87  E-value=4.8e-21  Score=162.18  Aligned_cols=117  Identities=12%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.|+|||    ++|+.+++.   ++|++|+|||+ +++||+.+ ..|+.++.++.  ++.|++|||||+||
T Consensus        52 ~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL  129 (232)
T cd04174          52 AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDL  129 (232)
T ss_pred             EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            4578899999999999    888888765   99999999999 99999985 89999998765  57899999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042         74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHH-NVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~-gv~elf~~i~~~l~~~~  121 (238)
                      ..            .+.++.++++++|++.++ .|+||||++|. ||+++|..++..+.+..
T Consensus       130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         130 RTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             ccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            64            367899999999999998 69999999998 89999999999887643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0091|consensus

Probab=99.86  E-value=2e-21  Score=152.27  Aligned_cols=116  Identities=24%  Similarity=0.357  Sum_probs=107.1

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCC-CCCEEEEEEeccCCCccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLR-TRPAIIVANKIDLARARA   78 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~-~~piilVgNK~DL~~~~~   78 (238)
                      +|..|+||+||    |+||+++.+   ++-++++|||+ ++.||+.+..|+.+...+...+ .+-++|||.|+||...++
T Consensus        54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq  133 (213)
T KOG0091|consen   54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ  133 (213)
T ss_pred             CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence            58899999999    999999988   99999999999 9999999999999998877644 444689999999999999


Q ss_pred             ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         79 VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        79 v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      |..++++++|+..|..|+|+||++|.||++.|..|++.+......
T Consensus       134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999876544

>KOG0081|consensus

Probab=99.86  E-value=8e-22  Score=153.90  Aligned_cols=116  Identities=22%  Similarity=0.431  Sum_probs=106.6

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      .+..|.||+||    ||||+|+..   +|-+++++||+ ++.||-+++.|+.+++.+.-..+.-+||+|||+||++.++|
T Consensus        63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V  142 (219)
T KOG0081|consen   63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV  142 (219)
T ss_pred             cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh
Confidence            35789999999    999999988   99999999999 99999999999999987654467779999999999999999


Q ss_pred             cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      +++++.+++.++|+||||+||.+|.||++..+.+...+.+..+.
T Consensus       143 s~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  143 SEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             hHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888766543

>PTZ00099 rab6; Provisional

Probab=99.86  E-value=1e-20  Score=153.92  Aligned_cols=118  Identities=24%  Similarity=0.369  Sum_probs=106.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..++++|||    ++|+.++..   +||++|+|||+ ++.||+.+..|+.++.+.. ..+.|++|||||+||.
T Consensus        20 ~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~   98 (176)
T PTZ00099         20 KTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLG   98 (176)
T ss_pred             EEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence            5678899999999999    888887765   99999999999 9999999999999998764 2578999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..+++..+++.+++.|+++||++|.||+++|.+|++.+.+.+
T Consensus        99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            77778888999999999999999999999999999999999987654

>KOG0095|consensus

Probab=99.86  E-value=4.7e-22  Score=153.80  Aligned_cols=121  Identities=24%  Similarity=0.420  Sum_probs=111.8

Q ss_pred             CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      |-|+++++|..|+|+|||    ||||+++.+   .|+++|+|||+ ...||+.+..|+.+|.+|.. +.+-.||||||+|
T Consensus        45 miktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d  123 (213)
T KOG0095|consen   45 MIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKID  123 (213)
T ss_pred             EEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccc
Confidence            679999999999999999    999999988   99999999999 89999999999999999872 5666899999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +.+.++++...++++++....-|+|+||+...||+.+|..++..+....+
T Consensus       124 ~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar  173 (213)
T KOG0095|consen  124 LADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEAR  173 (213)
T ss_pred             hhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988889999999999999999999987766543

>cd01875 RhoG RhoG subfamily

Probab=99.86  E-value=5.1e-21  Score=157.27  Aligned_cols=115  Identities=21%  Similarity=0.337  Sum_probs=101.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.+++.   ++|++|+|||+ ++.||+.+. .|+.++.+..  .++|++|||||+||
T Consensus        42 ~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL  119 (191)
T cd01875          42 AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDL  119 (191)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhh
Confidence            4567889999999999    899988866   99999999999 999999996 6999887654  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .+.            +.+..++++.+++..+ ++|++|||++|.||+++|..+++.+..
T Consensus       120 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             hcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            754            2467788999999998 599999999999999999999988854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.85  E-value=1.2e-20  Score=155.93  Aligned_cols=109  Identities=15%  Similarity=0.245  Sum_probs=94.6

Q ss_pred             EECCeEEEEEEEe----C-CCcccccCCceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCC---
Q psy14042          6 QGHSGKVRAIIWN----E-QYEKLTSSDETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLAR---   75 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e-~~~~l~~~~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~---   75 (238)
                      .+++..++|+|||    + .++.+...++|++|+|||+ ++.||+.+. .|+.++++..  .+.|++|||||+||..   
T Consensus        60 ~~~~~~v~l~iwDTaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~  137 (195)
T cd01873          60 VVDGVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADL  137 (195)
T ss_pred             eeCCEEEEEEEEeCCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccc
Confidence            5789999999999    2 2333333399999999999 999999997 6999998765  5789999999999964   


Q ss_pred             ----------------cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         76 ----------------ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        76 ----------------~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                                      .+.++.++++.+|++.+++|+||||++|.||+++|..++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         138 DEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             chhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                            47889999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04144 Ras2 Ras2 subfamily

Probab=99.84  E-value=6e-20  Score=150.53  Aligned_cols=123  Identities=24%  Similarity=0.358  Sum_probs=107.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEecc
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKID   72 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~D   72 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.||+.+..|+..+.....  ..+.|++|||||+|
T Consensus        38 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D  117 (190)
T cd04144          38 KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD  117 (190)
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence            4567888899999999    788887765   99999999999 99999999999999876543  25789999999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ  125 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~  125 (238)
                      +...+.+...++..+++..+++|+++||++|.|++++|..+++.+........
T Consensus       118 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~  170 (190)
T cd04144         118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ  170 (190)
T ss_pred             ccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC
Confidence            98878888888888999999999999999999999999999998877665543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0097|consensus

Probab=99.84  E-value=9.8e-21  Score=145.36  Aligned_cols=122  Identities=20%  Similarity=0.341  Sum_probs=112.0

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ++-|++.|+.++|+|||    ||||.++.+   ++.++++|||+ .+.++..+..|+...+... .++..++|+|||.||
T Consensus        50 triievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadl  128 (215)
T KOG0097|consen   50 TRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADL  128 (215)
T ss_pred             eeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhh
Confidence            35689999999999999    999999988   99999999999 9999999999999987654 267789999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      +.++.+..+++++++++.|+.|+++||++|+||++.|-..++++..+....
T Consensus       129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdg  179 (215)
T KOG0097|consen  129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG  179 (215)
T ss_pred             hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence            999999999999999999999999999999999999999999998776543

>cd04122 Rab14 Rab14 subfamily

Probab=99.84  E-value=4.2e-20  Score=147.69  Aligned_cols=116  Identities=21%  Similarity=0.379  Sum_probs=103.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|+.++..   +++++|+|||+ ++.+|+.+..|+.++.... ..+.|+++||||+|+.
T Consensus        42 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~  120 (166)
T cd04122          42 RIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLE  120 (166)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence            4567888999999999    777777655   99999999999 9999999999999987654 2678999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..+++.++++..+++|+++||++|.|++++|..+++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            888888899999999999999999999999999999999987743

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0395|consensus

Probab=99.84  E-value=7.3e-20  Score=151.23  Aligned_cols=121  Identities=28%  Similarity=0.429  Sum_probs=111.0

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +|.+.+++..+.|+|+|    +.|..+...   +++++++||++ |+.||+.+..++..|.+......+|++|||||+||
T Consensus        41 ~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl  120 (196)
T KOG0395|consen   41 RKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL  120 (196)
T ss_pred             eEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc
Confidence            57889999999999999    677777665   89999999999 99999999999999976665678999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ...++++.++++.++..++++|+|+||+.+.+++++|..|++.+.....
T Consensus       121 ~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  121 ERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             hhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999987443

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.84  E-value=6.3e-20  Score=148.73  Aligned_cols=112  Identities=16%  Similarity=0.314  Sum_probs=98.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+++..++++|||    ++|+.++..   ++|++|+|||+ +++||+.+. .|+.++.+..  .++|++|||||+|+
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl  117 (175)
T cd01874          40 VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL  117 (175)
T ss_pred             EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence            4567889999999999    888877765   99999999999 999999996 5999987754  57999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ...            +.+..+++++++++.+ +.|++|||++|.|++++|+.++..
T Consensus       118 ~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         118 RDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             hhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            643            5678889999999887 689999999999999999999864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=99.83  E-value=6.3e-20  Score=146.40  Aligned_cols=113  Identities=24%  Similarity=0.430  Sum_probs=101.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|..++..   ++|++++|||+ ++.||+.+..|+.++.+.. ..+.|+++||||+||.
T Consensus        40 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~  118 (161)
T cd04117          40 KTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE  118 (161)
T ss_pred             EEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence            4677888899999999    778777655   99999999999 9999999999999998764 3579999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus       119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            888888999999999999999999999999999999999854

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04136 Rap_like Rap-like subfamily

Probab=99.83  E-value=1.1e-19  Score=143.93  Aligned_cols=115  Identities=23%  Similarity=0.388  Sum_probs=103.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  119 (163)
T cd04136          40 KQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE  119 (163)
T ss_pred             EEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            5678899999999999    888888765   99999999999 999999999999999877545689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+++..+++.++.+++++||++|.|++++|..+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            7777888888888888889999999999999999999998654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.83  E-value=9.3e-20  Score=145.51  Aligned_cols=114  Identities=17%  Similarity=0.219  Sum_probs=96.5

Q ss_pred             cEEEECCeEEEEEEEeCCC--cccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--Ccc
Q psy14042          3 QSLQGHSGKVRAIIWNEQY--EKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--RAR   77 (238)
Q Consensus         3 k~i~~~~~~v~l~iWDe~~--~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~~~   77 (238)
                      +++.+++..+.++|||..-  +.....++|++++|||+ ++.||+.+..|+.++.+.....+.|++|||||+||.  ..+
T Consensus        38 ~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~  117 (158)
T cd04103          38 KEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPR  117 (158)
T ss_pred             EEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCc
Confidence            5688999999999999111  11112289999999999 999999999999999887655779999999999995  467


Q ss_pred             cccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         78 AVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        78 ~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      .++.+++++++++. +++|+||||++|.||+++|..+++.
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         118 VIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             ccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            88888999999876 5899999999999999999999854

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04175 Rap1 Rap1 subgroup

Probab=99.83  E-value=1.2e-19  Score=144.53  Aligned_cols=116  Identities=22%  Similarity=0.389  Sum_probs=104.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++++|||+ ++.+|+.+..|...+.+.....+.|++|||||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  119 (164)
T cd04175          40 KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  119 (164)
T ss_pred             EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence            5677889999999999    888888876   99999999999 999999999999999876555789999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++..+++..+++|+++||++|.|++++|.++++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            88788888888888889999999999999999999999997663

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.83  E-value=1e-19  Score=150.90  Aligned_cols=115  Identities=16%  Similarity=0.300  Sum_probs=100.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..++++|||    ++|+.++..   +++++|+|||+ ++.||+.+..|+.++.+..  .++|++|||||+||.
T Consensus        35 ~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~  112 (200)
T smart00176       35 LVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVK  112 (200)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence            4567788999999999    889988865   99999999999 9999999999999998865  689999999999996


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      . +.+..+. ..+++..+++|++|||++|.||+++|.+|++.+....
T Consensus       113 ~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  157 (200)
T smart00176      113 D-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  157 (200)
T ss_pred             c-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence            4 3455444 3677888999999999999999999999999987653

Ran is involved in the active transport of proteins through nuclear pores.

>PTZ00369 Ras-like protein; Provisional

Probab=99.83  E-value=1.6e-19  Score=147.92  Aligned_cols=120  Identities=24%  Similarity=0.340  Sum_probs=107.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   +++++|+|||+ ++++|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus        44 ~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~  123 (189)
T PTZ00369         44 KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD  123 (189)
T ss_pred             EEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            5678899999999999    888888765   99999999999 999999999999999876544689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..+++..+++.++++|+++||++|.|++++|.+|++.+....+
T Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        124 SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK  171 (189)
T ss_pred             cccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            777788888888888889999999999999999999999998876543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.83  E-value=1e-19  Score=144.40  Aligned_cols=116  Identities=25%  Similarity=0.426  Sum_probs=105.9

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+.++|||    ++|..+...   ++|++|+|||+ +++||+.+..|++.+..+.. .+.|++|||||+|+
T Consensus        38 ~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~  116 (162)
T PF00071_consen   38 SKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDL  116 (162)
T ss_dssp             EEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccc
Confidence            36788899999999999    677665544   99999999999 99999999999999998873 47999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...++++.+++++++++++++|+++||+++.||.++|..+++.+.
T Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  117 SDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             GGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            998999999999999999999999999999999999999998874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04134 Rho3 Rho3 subfamily

Probab=99.83  E-value=2.4e-19  Score=146.97  Aligned_cols=117  Identities=20%  Similarity=0.321  Sum_probs=99.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   +++++|+|||+ +++||+.+. .|+..+....  .+.|++|||||+||
T Consensus        39 ~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl  116 (189)
T cd04134          39 HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDL  116 (189)
T ss_pred             EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            4566788899999999    788877765   89999999999 999999996 6999998754  68999999999999


Q ss_pred             CCcc------------cccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARAR------------AVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~------------~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+            .+..+++..+++..+ ++|++|||++|.|++++|.+|++.+....
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         117 REARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             ccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence            7543            356677888888876 78999999999999999999998886443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.82  E-value=2.5e-19  Score=148.07  Aligned_cols=122  Identities=19%  Similarity=0.280  Sum_probs=106.2

Q ss_pred             cEEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEe
Q psy14042          3 QSLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANK   70 (238)
Q Consensus         3 k~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK   70 (238)
                      +.+.++ +..+.+++||    ++|+.++..   +++++|+|||+ ++++|+.+..|+.++.....   ..++|++|||||
T Consensus        40 ~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK  119 (201)
T cd04107          40 KVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK  119 (201)
T ss_pred             EEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence            456666 7899999999    888888765   99999999999 99999999999999876421   267899999999


Q ss_pred             ccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         71 IDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        71 ~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      +||...+.+..+++.++++..+ .+|+++||++|.|++++|.+|++.+....+..
T Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~  174 (201)
T cd04107         120 CDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNL  174 (201)
T ss_pred             CCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhh
Confidence            9998777888899999999998 68999999999999999999999998765443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.82  E-value=2.4e-19  Score=145.24  Aligned_cols=112  Identities=17%  Similarity=0.319  Sum_probs=97.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..++++|||    ++|+.++..   ++|++|+|||+ +++||+.+. .|+..+....  .+.|++|||||+||
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl  117 (174)
T cd01871          40 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  117 (174)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhh
Confidence            4677889999999999    778777765   99999999999 999999995 6998887654  58999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ...            +.++.+++..+++.++. +|+||||++|.|++++|+.+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            643            35788899999999985 99999999999999999999853

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=99.82  E-value=3.2e-19  Score=141.78  Aligned_cols=115  Identities=25%  Similarity=0.405  Sum_probs=102.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.||+++..|+..+.+.....+.|+++||||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~  119 (163)
T cd04176          40 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE  119 (163)
T ss_pred             EEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence            4677889999999999    889888876   99999999999 999999999999999876544789999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+...+...+++..+++++++||++|.|++++|..+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            7777777778888888899999999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.82  E-value=3.2e-19  Score=150.17  Aligned_cols=117  Identities=14%  Similarity=0.208  Sum_probs=100.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.|+|||    ++|+.+++.   ++|++|+|||+ +++||+.+ ..|..++....  .+.|+||||||+||
T Consensus        40 ~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL  117 (222)
T cd04173          40 ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDM  117 (222)
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECccc
Confidence            4678899999999999    778777765   99999999999 99999999 57888876654  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHHHhhh
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l~~~~  121 (238)
                      ...            ..++.+++..++++.++ +|+||||+++.+ |+++|..++.......
T Consensus       118 ~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         118 RTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             ccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence            642            13778899999999995 899999999985 9999999998775543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04127 Rab27A Rab27a subfamily

Probab=99.81  E-value=2.8e-19  Score=144.49  Aligned_cols=111  Identities=24%  Similarity=0.487  Sum_probs=99.7

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      +..+.++|||    ++|+.++..   ++|++|+|||+ +++||.++..|+.++.......+.|+++||||+|+...+.++
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~  139 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS  139 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence            5679999999    777777665   99999999999 999999999999999876544678999999999998888888


Q ss_pred             HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .+++..++++.+++++++||++|.|++++|..|++.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=99.81  E-value=4.1e-19  Score=144.99  Aligned_cols=117  Identities=16%  Similarity=0.248  Sum_probs=98.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   ++|++++|||+ ++.||+++..|+.++.+... ...| +|||||+||.
T Consensus        40 ~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~  117 (182)
T cd04128          40 KTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLF  117 (182)
T ss_pred             EEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhcc
Confidence            5788899999999999    788887766   99999999999 99999999999999987642 4566 6899999995


Q ss_pred             C-----cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 R-----ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~-----~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .     .+....+++..+++..++++++|||++|.|++++|..+++.+.+.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         118 ADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             ccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence            2     2222346778888899999999999999999999999999887544

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.81  E-value=5.3e-19  Score=141.98  Aligned_cols=114  Identities=20%  Similarity=0.351  Sum_probs=99.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ +++||+.+. .|+..+.++.  ++.|++|||||+|+
T Consensus        37 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  114 (174)
T smart00174       37 ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDL  114 (174)
T ss_pred             EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhh
Confidence            4677889999999999    778777765   99999999999 999999996 6999998765  68999999999999


Q ss_pred             CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.            .++.+++.++++..+. +|++|||++|.|++++|..+++.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             hhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence            7532            3777888999999986 8999999999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01865 Rab3 Rab3 subfamily

Probab=99.81  E-value=6.6e-19  Score=140.74  Aligned_cols=115  Identities=23%  Similarity=0.431  Sum_probs=101.3

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++..++..+.+++||    ++|+.++..   ++|++++|||+ ++++|+.+..|+.++.+.. ..+.|+++||||+||..
T Consensus        42 ~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~  120 (165)
T cd01865          42 TVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMED  120 (165)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCc
Confidence            556678889999999    777776655   99999999999 9999999999999997754 25789999999999988


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .+.+..+++.++++..+++++++||++|.|++++|+.+++.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         121 ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            88888888888999999999999999999999999999987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.81  E-value=7.2e-19  Score=140.78  Aligned_cols=116  Identities=23%  Similarity=0.482  Sum_probs=103.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|..++..   ++|++|+|||+ ++++|+.+..|+..+.+.. ..+.|+++||||+|+.
T Consensus        43 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~  121 (167)
T cd01867          43 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDME  121 (167)
T ss_pred             EEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence            4567788899999999    667776654   99999999999 9999999999999998754 3679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      +.+.+..+++..+++.++++++++||++|.|++++|+.+++.+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         122 EKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            888888888999999999999999999999999999999988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04125 RabA_like RabA-like subfamily

Probab=99.81  E-value=1.2e-18  Score=142.33  Aligned_cols=121  Identities=22%  Similarity=0.344  Sum_probs=105.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++..+. ..+.|+++||||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~  118 (188)
T cd04125          40 KTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV  118 (188)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc
Confidence            4567788899999999    667766655   99999999999 9999999999999998765 2568999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      ..+.+..+++..++...+++|+++||++|.|++++|..+++.+.......
T Consensus       119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~  168 (188)
T cd04125         119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ  168 (188)
T ss_pred             ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence            88888888888999889999999999999999999999999998765444

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.80  E-value=1.1e-18  Score=145.75  Aligned_cols=119  Identities=22%  Similarity=0.373  Sum_probs=105.1

Q ss_pred             cEEEE-CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQG-HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~-~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+ ++..+.+++||    ++|..++..   ++|++|+|||+ +++||+++..|+.++.+.......|++|||||+|+
T Consensus        42 ~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          42 RLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            45555 46789999999    778777655   99999999999 99999999999999987654467889999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..+++..+++.++++|+++||++|.|++++|..|++.+.+..
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             ccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            888888899999999999999999999999999999999999887664

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.80  E-value=1.2e-18  Score=138.40  Aligned_cols=117  Identities=22%  Similarity=0.378  Sum_probs=103.5

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++++|+.+..|...+.+.....+.|+++||||+|+
T Consensus        38 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl  117 (164)
T smart00173       38 RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL  117 (164)
T ss_pred             EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            35677888999999999    788777665   89999999999 99999999999999877654468999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...+.+..+++..+++..+.+|+++||++|.|++++|+.|++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             cccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            887778888888899989999999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04112 Rab26 Rab26 subfamily

Probab=99.80  E-value=1.2e-18  Score=142.95  Aligned_cols=119  Identities=21%  Similarity=0.419  Sum_probs=105.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|..++..   ++|++|+|||+ ++++|+++..|+..+.... ..++|+++||||+||.
T Consensus        41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~  119 (191)
T cd04112          41 KVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMS  119 (191)
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccch
Confidence            4577888999999999    677766654   89999999999 9999999999999998764 2578999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..+++..+++.++++|+++||++|.|++++|..|++.+.....
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~  167 (191)
T cd04112         120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY  167 (191)
T ss_pred             hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            778888888999999999999999999999999999999999977653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.80  E-value=1e-18  Score=140.95  Aligned_cols=117  Identities=21%  Similarity=0.243  Sum_probs=100.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++++|||+ ++++|+.+..|+.++.+.....+.|+++||||+||.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~  119 (170)
T cd04108          40 ERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS  119 (170)
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence            4567788899999999    788877766   99999999999 999999999999998765434567899999999996


Q ss_pred             Cccc--ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARA--VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~--v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.  +.++++..+++.++.+|+++||++|.|++++|..+++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5433  35667788888889999999999999999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04126 Rab20 Rab20 subfamily

Probab=99.80  E-value=8.7e-19  Score=147.36  Aligned_cols=111  Identities=26%  Similarity=0.347  Sum_probs=97.6

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC------
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR------   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~------   75 (238)
                      ..+.+.|||    ++|+.++..   ++|++|+|||+ +++||+++..|+..+.+.. ..+.|+||||||+||..      
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~  120 (220)
T cd04126          42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAG  120 (220)
T ss_pred             eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccc
Confidence            468899999    788887765   99999999999 9999999999888887643 36789999999999975      


Q ss_pred             -------------cccccHHHHHHHHHhCC--------------CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         76 -------------ARAVSSQDAKNLAASFK--------------VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        76 -------------~~~v~~~~~~~~~~~~~--------------~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                                   .+.++.+++..++++.+              ++|+||||++|.||+++|..+++.+....
T Consensus       121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~  193 (220)
T cd04126         121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI  193 (220)
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence                         67889999999999876              68999999999999999999998887554

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.79  E-value=1.8e-18  Score=145.31  Aligned_cols=115  Identities=17%  Similarity=0.321  Sum_probs=98.6

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+..++..+++.|||    ++|+.++..   +++++|+|||+ ++.||+.+..|+.++.+..  .+.|++|||||+||..
T Consensus        54 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~  131 (219)
T PLN03071         54 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN  131 (219)
T ss_pred             EEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh
Confidence            455677889999999    888888765   99999999999 9999999999999998765  6899999999999964


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                       +.+..+++ .+++..+++||+|||++|.|++++|.+|++.+.....
T Consensus       132 -~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~~  176 (219)
T PLN03071        132 -RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (219)
T ss_pred             -ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCcc
Confidence             34445555 6777888999999999999999999999999876543

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.79  E-value=1.7e-18  Score=138.10  Aligned_cols=115  Identities=24%  Similarity=0.453  Sum_probs=102.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|..++..   ++|++|+|||+ +++||..+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus        42 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~  120 (166)
T cd01869          42 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT  120 (166)
T ss_pred             EEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcc
Confidence            4567788889999999    777777655   89999999999 9999999999999998764 3578999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            88888888999999999999999999999999999999998774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04110 Rab35 Rab35 subfamily

Probab=99.79  E-value=2.4e-18  Score=142.16  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=105.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   +++++|+|||+ ++++|+.+..|+..+....  ...|++|||||+|+.
T Consensus        46 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~  123 (199)
T cd04110          46 RTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDP  123 (199)
T ss_pred             EEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence            3566778889999999    778877765   89999999999 9999999999999987755  689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++|+++||++|.||+++|.+|++.+......
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~  172 (199)
T cd04110         124 ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKD  172 (199)
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhc
Confidence            8777888889999999999999999999999999999999999765543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=99.79  E-value=1.4e-18  Score=145.28  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=102.9

Q ss_pred             cEEEECC-eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC--CCCCEEEEEEec
Q psy14042          3 QSLQGHS-GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL--RTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~-~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~--~~~piilVgNK~   71 (238)
                      +.+.+++ ..+.++|||    +.|+.++..   ++|++|+|||+ +++||+.+..|+..+.+....  .+.|+++||||+
T Consensus        40 ~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~  119 (215)
T cd04109          40 KRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT  119 (215)
T ss_pred             EEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence            4566654 579999999    667766655   99999999999 999999999999999887532  457899999999


Q ss_pred             cCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         72 DLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ||...+.+..+++..+++.++++++++||++|.|++++|+.|++.+...
T Consensus       120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9988888888899999999999999999999999999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.79  E-value=1.6e-18  Score=137.53  Aligned_cols=116  Identities=23%  Similarity=0.403  Sum_probs=101.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC----CCCCEEEEEEe
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL----RTRPAIIVANK   70 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~----~~~piilVgNK   70 (238)
                      +.+.+++..+.+++||    ++|..++..   ++|++|+|||+ ++.+|+.+..|+.++.++...    .+.|+++|+||
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  119 (168)
T cd04119          40 KKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK  119 (168)
T ss_pred             EEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence            4577788999999999    666666654   99999999999 999999999999999887542    57899999999


Q ss_pred             ccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         71 IDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        71 ~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +|+..++.+..++...+++..+++++++||++|.|++++|..|++.+.
T Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            999877778888888889989999999999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03110 Rab GTPase; Provisional

Probab=99.79  E-value=2.2e-18  Score=144.32  Aligned_cols=118  Identities=26%  Similarity=0.401  Sum_probs=106.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.++|||    ++|+.++..   +++++|+|||+ ++.+|+.+..|+..+.+.. ..++|+++||||+||.
T Consensus        52 ~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~  130 (216)
T PLN03110         52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLN  130 (216)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcc
Confidence            5678889999999999    778777665   99999999999 9999999999999998764 2679999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..+++..++...+++|+++||++|.|++++|..+++.+.+..
T Consensus       131 ~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~  177 (216)
T PLN03110        131 HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHII  177 (216)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            88888888999999999999999999999999999999999987754

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.79  E-value=2.9e-18  Score=135.95  Aligned_cols=115  Identities=23%  Similarity=0.336  Sum_probs=101.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|..++..   ++|++++|||+ ++.+|+.+..|+..+.+.....+.|++||+||+|+.
T Consensus        41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~  120 (164)
T cd04145          41 KQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE  120 (164)
T ss_pred             EEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence            3556888889999999    778777755   99999999999 999999999999998876544689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+++.++++..+++++++||++|.|++++|+.|++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            8777888888889988899999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.78  E-value=3.7e-18  Score=134.62  Aligned_cols=114  Identities=23%  Similarity=0.385  Sum_probs=99.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   +++++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  119 (162)
T cd04138          40 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA  119 (162)
T ss_pred             EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            4567888889999999    788888766   89999999999 999999999999999877645789999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      . +.+...++..+++..+++++++||++|.|++++|..+++.+
T Consensus       120 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         120 A-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             c-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            6 45667778888888899999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.78  E-value=2.8e-18  Score=137.38  Aligned_cols=113  Identities=17%  Similarity=0.255  Sum_probs=98.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~   71 (238)
                      +.+.+++..++++|||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++..+..   ..++|++||+||+
T Consensus        45 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  124 (170)
T cd04116          45 KDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN  124 (170)
T ss_pred             EEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence            5677889999999999    778887765   89999999999 89999999999999877643   2568999999999


Q ss_pred             cCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         72 DLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      |+. .+.+..+++.+++++++ .+++++||++|.|++++|..+++.
T Consensus       125 Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         125 DIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            997 56677888999998887 489999999999999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04140 ARHI_like ARHI subfamily

Probab=99.78  E-value=4e-18  Score=136.17  Aligned_cols=112  Identities=24%  Similarity=0.331  Sum_probs=97.6

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDL   73 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL   73 (238)
                      .+..++..+.+++||    ++|..++..   +++++|+|||+ ++.+|+.+..|+..+.+...  ..+.|++|||||+|+
T Consensus        41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (165)
T cd04140          41 VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE  120 (165)
T ss_pred             EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence            455677889999999    788777654   99999999999 99999999999988876542  257999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ...+++..+++..++...+++|+++||++|.|++++|++|+.
T Consensus       121 ~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         121 SHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             cccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            887788888888888888999999999999999999999984

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.78  E-value=4.1e-18  Score=136.88  Aligned_cols=115  Identities=16%  Similarity=0.367  Sum_probs=101.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCc-ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYE-KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~-~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+ .+...   ++|++++|||+ ++.+|+.+..|+.++.......++|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  121 (170)
T cd04115          42 RTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL  121 (170)
T ss_pred             EEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            3567788899999999    6676 34444   89999999999 99999999999999988765578999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCC---CCCHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGI---HHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t---~~gv~elf~~i~~~l  117 (238)
                      ...+.+..+++..+++..+++|+++||++   +.|++++|..+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             hhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            98888888899999999999999999999   899999999999765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.78  E-value=6.6e-18  Score=134.68  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=98.6

Q ss_pred             cEEEECCeEEEEEEEe----CCC-cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEecc
Q psy14042          3 QSLQGHSGKVRAIIWN----EQY-EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKID   72 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~-~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~D   72 (238)
                      +.+.+++..+++++||    +++ ......   ++|++|+|||+ ++.||+.+..|+..+..... ..+.|+++||||+|
T Consensus        38 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D  117 (165)
T cd04146          38 RQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD  117 (165)
T ss_pred             EEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            4567889999999999    322 222222   89999999999 99999999999999887653 35899999999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHH
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIR  118 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~  118 (238)
                      +...+.+..+++.++++..+++|+++||+++. ||+++|+.+++.+.
T Consensus       118 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         118 LLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             hHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            98878888889999999999999999999994 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01868 Rab11_like Rab11-like

Probab=99.78  E-value=4.5e-18  Score=135.39  Aligned_cols=115  Identities=30%  Similarity=0.466  Sum_probs=101.6

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+.+..++..+.+++||    ++|..++..   +++++|+|||+ ++.+|+.+..|+.++.+.. ..+.|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl  120 (165)
T cd01868          42 TRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence            35677888889999999    677777665   89999999999 9999999999999998765 246899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...+.+..++...++...+++++++||++|.|++++|+.++..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             cccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            88888888888999988899999999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03108 Rab family protein; Provisional

Probab=99.77  E-value=8.2e-18  Score=140.28  Aligned_cols=118  Identities=21%  Similarity=0.391  Sum_probs=104.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.. ....|+++|+||+||.
T Consensus        46 ~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~  124 (210)
T PLN03108         46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLA  124 (210)
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc
Confidence            3577889999999999    677766654   89999999999 9999999999999887654 2679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.++.+++.++++.++++|+++||+++.|++++|.++++.+..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            88888999999999999999999999999999999999999987654

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.77  E-value=8.4e-18  Score=134.93  Aligned_cols=112  Identities=18%  Similarity=0.326  Sum_probs=94.8

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +..++..+.+++||    ++|..++..   ++|++|+|||+ ++++|+.+..|+.++.+..  .+.|+++||||+|+.. 
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-  118 (166)
T cd00877          42 FHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-  118 (166)
T ss_pred             EEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-
Confidence            45567889999999    777777655   89999999999 9999999999999998876  4899999999999973 


Q ss_pred             ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         77 RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +.+.. +..++++..+++++++||++|.|++++|..|++.+.+.
T Consensus       119 ~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  161 (166)
T cd00877         119 RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN  161 (166)
T ss_pred             ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Confidence            33333 34567777889999999999999999999999888653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.77  E-value=3.8e-18  Score=135.16  Aligned_cols=112  Identities=22%  Similarity=0.407  Sum_probs=99.0

Q ss_pred             cEEEEC--CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          3 QSLQGH--SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         3 k~i~~~--~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      +.+.++  +..+++++||    ++|+.++..   ++|++++|||+ ++++|+.+..|+..+.+..  .+.|+++|+||+|
T Consensus        40 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~D  117 (162)
T cd04106          40 KQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKID  117 (162)
T ss_pred             EEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChh
Confidence            345555  7789999999    778777655   99999999999 9999999999999987654  6899999999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +..++.+..+++..+++..+++++++||++|.|++++|..|+..
T Consensus       118 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         118 LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             cccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            98888888889999999999999999999999999999999753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04148 RGK RGK subfamily

Probab=99.77  E-value=1.2e-17  Score=140.55  Aligned_cols=121  Identities=36%  Similarity=0.591  Sum_probs=103.9

Q ss_pred             cEEEECCeEEEEEEEe----CCC-cccccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQY-EKLTSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~-~~l~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      +++.+++..+.+++||    +.+ +..... ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+..
T Consensus        41 ~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~  120 (221)
T cd04148          41 RTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR  120 (221)
T ss_pred             EEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence            5788889999999999    312 222233 89999999999 9999999999999998765446899999999999988


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      .+.+..+++.+++..++++|+++||+++.||+++|+.+++.+......
T Consensus       121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~  168 (221)
T cd04148         121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS  168 (221)
T ss_pred             cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence            888888888899999999999999999999999999999999765543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=99.77  E-value=1.1e-17  Score=133.91  Aligned_cols=116  Identities=23%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   +++++++|||+ ++++|+.+..|...+.+.....++|+++++||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~  119 (168)
T cd04177          40 KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE  119 (168)
T ss_pred             EEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence            5677888999999999    788888776   99999999999 999999999999998875544789999999999998


Q ss_pred             CcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++..+++.++ ++++++||+++.|++++|.++++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            878888888888888888 89999999999999999999997664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04118 Rab24 Rab24 subfamily

Probab=99.77  E-value=2e-17  Score=135.38  Aligned_cols=117  Identities=23%  Similarity=0.318  Sum_probs=101.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++....  .+.|+++|+||+|+.
T Consensus        41 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~  118 (193)
T cd04118          41 KRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLI  118 (193)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEccccc
Confidence            4678899999999999    677777654   99999999999 9999999999999998754  579999999999995


Q ss_pred             Cc----ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RA----RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~----~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..    +.+..+++..++...+++++++||+++.|++++|+.+++.+....
T Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRA  169 (193)
T ss_pred             ccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            32    455667788888889999999999999999999999999987544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.77  E-value=1e-17  Score=134.89  Aligned_cols=110  Identities=20%  Similarity=0.353  Sum_probs=95.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+++++||    ++|..++..   ++|++|+|||+ ++.+|+.+. .|+..+.+..  .+.|+++||||+||
T Consensus        39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  116 (173)
T cd04130          39 VVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADL  116 (173)
T ss_pred             EEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhh
Confidence            4567888899999999    678777765   99999999999 999999984 6998887643  57999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHH
Q psy14042         74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~  114 (238)
                      ..            .+.+..+++..+++..+. +|+++||++|.|++++|+.++
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             ccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            63            456788889999999887 899999999999999999887

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.76  E-value=1.2e-17  Score=135.85  Aligned_cols=118  Identities=23%  Similarity=0.369  Sum_probs=100.3

Q ss_pred             EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+..+ +..+.++|||    ++|..+++.   ++|++|+|||+ ++.||+.+. .|+..+....  .+.|+++||||+||
T Consensus        40 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  117 (187)
T cd04132          40 NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDL  117 (187)
T ss_pred             EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence            35554 7789999999    677777654   99999999999 999999996 5998887654  68999999999999


Q ss_pred             CCc----ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         74 ARA----RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        74 ~~~----~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ...    +.+..+++.+++...++ +++++||++|.|++++|..+++.+......
T Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK  172 (187)
T ss_pred             hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            653    35677889999999998 899999999999999999999999876543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.76  E-value=1.3e-17  Score=133.77  Aligned_cols=116  Identities=19%  Similarity=0.374  Sum_probs=102.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.|||    ++|..+...   ++|++|+|||+ ++.||+.+..|+.+++++. .++.|+++|+||+|+.
T Consensus        44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~  122 (168)
T cd01866          44 RMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLE  122 (168)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence            4567788899999999    677776654   99999999999 9999999999999998764 2679999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..++++.++...+++++++||+++.|++++|..+++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            777888889999999999999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04113 Rab4 Rab4 subfamily

Probab=99.76  E-value=1.1e-17  Score=132.66  Aligned_cols=113  Identities=23%  Similarity=0.342  Sum_probs=100.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|..++..   ++|++|+|||+ ++.+|..+..|+.+++... ..+.|++||+||+|+.
T Consensus        40 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~  118 (161)
T cd04113          40 KIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLA  118 (161)
T ss_pred             EEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc
Confidence            4567788889999999    667666555   99999999999 9999999999999987654 3689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+.+..+++..+++..+++++++||+++.|++++|+.+++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            888888889999999999999999999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04124 RabL2 RabL2 subfamily

Probab=99.76  E-value=2e-17  Score=131.79  Aligned_cols=112  Identities=23%  Similarity=0.297  Sum_probs=95.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+++..  .+.|+++|+||+|+..
T Consensus        41 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~  118 (161)
T cd04124          41 NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDP  118 (161)
T ss_pred             EEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCch
Confidence            456788899999999    888888765   99999999999 9999999999999998754  6799999999999953


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .   ..++...+++..+++++++||++|.|++++|..+++.+.+.
T Consensus       119 ~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         119 S---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             h---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            2   12345567777889999999999999999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01864 Rab19 Rab19 subfamily

Probab=99.75  E-value=1.5e-17  Score=132.70  Aligned_cols=113  Identities=24%  Similarity=0.394  Sum_probs=98.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~  121 (165)
T cd01864          43 KTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLE  121 (165)
T ss_pred             EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence            4567788889999999    667666654   89999999999 9999999999999998754 3689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+.+..+++..+++..+. .++++||++|.|++++|..+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         122 EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            8888888888999998886 68999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=99.75  E-value=3.9e-17  Score=135.18  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=97.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccc-----------cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLT-----------SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPA   64 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~-----------~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~pi   64 (238)
                      +.+.+++..+.++|||    ++|....           ..++|++|+|||+ +++||+.+..|+.++.+...  ..++|+
T Consensus        40 ~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi  119 (198)
T cd04142          40 PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI  119 (198)
T ss_pred             eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence            3567789899999999    3332111           1289999999999 99999999999999887642  367999


Q ss_pred             EEEEEeccCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         65 IIVANKIDLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        65 ilVgNK~DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +|||||+|+...+.+..+++..+++ .++++|++|||++|.|++++|+.+++.+....
T Consensus       120 iivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         120 VVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             EEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            9999999998777777777777754 56899999999999999999999998877544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.75  E-value=2.4e-17  Score=140.95  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=98.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhc--------CCCCCCEEE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEG--------YLRTRPAII   66 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~--------~~~~~piil   66 (238)
                      +.+.+++..+.++|||    ++|+.+...   ++|++|+|||+ +++||+.+..|+.++....        ...+.|+||
T Consensus        39 k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIi  118 (247)
T cd04143          39 KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI  118 (247)
T ss_pred             EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEE
Confidence            5678889999999999    677766654   89999999999 9999999999999987642        125789999


Q ss_pred             EEEeccCCCcccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         67 VANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        67 VgNK~DL~~~~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      |+||+|+...+++..+++.+++.. .+++|+++||++|.|++++|..|++.+
T Consensus       119 vgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999987777888888887764 478899999999999999999999765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03118 Rab family protein; Provisional

Probab=99.75  E-value=3.2e-17  Score=136.53  Aligned_cols=119  Identities=22%  Similarity=0.338  Sum_probs=103.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHH-HHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQ-DVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~-~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+.. |...+..+....+.|++||+||+|+
T Consensus        53 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl  132 (211)
T PLN03118         53 KQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR  132 (211)
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            3466788889999999    788887765   99999999999 9999999975 7777765554467899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..++...++...+++|+++||+++.|++++|..|++.+...+
T Consensus       133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            887788888888899999999999999999999999999999997654

>cd04135 Tc10 TC10 subfamily

Probab=99.75  E-value=5.2e-17  Score=130.33  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=96.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ..+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+.+..  .+.|+++||||+|+
T Consensus        39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~--~~~piivv~nK~Dl  116 (174)
T cd04135          39 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPYLLVGTQIDL  116 (174)
T ss_pred             EEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeEchhh
Confidence            3567788899999999    777776665   99999999999 999999995 6888887653  78999999999998


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...            +.+..+++..+++..++ +|++|||++|.|++++|..+++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         117 RDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            643            35777889999999886 799999999999999999999765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0393|consensus

Probab=99.74  E-value=1.8e-17  Score=135.54  Aligned_cols=118  Identities=19%  Similarity=0.314  Sum_probs=103.2

Q ss_pred             cEEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          3 QSLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         3 k~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      -.+.++ |+.|+|.+||    |.|..|++.   ++|.+|++|++ +++||+++ ..|+.+++.+.  ++.|+||||+|.|
T Consensus        43 ~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~D  120 (198)
T KOG0393|consen   43 ANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKAD  120 (198)
T ss_pred             EEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHH
Confidence            357885 9999999999    666666544   99999999999 99999998 67999999998  8999999999999


Q ss_pred             CCCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         73 LARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        73 L~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      |..+            ..+..+++..+|++.| ..|+||||++..|+.++|+..++.....++
T Consensus       121 Lr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  121 LRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            9632            3567889999999999 579999999999999999999988876553

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.74  E-value=3.6e-17  Score=129.95  Aligned_cols=112  Identities=21%  Similarity=0.358  Sum_probs=96.5

Q ss_pred             EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.++ +..+.+++||    ++|+.+...   ++|++++|||+ ++++|+.+..|+.++.+..  .+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~  120 (164)
T cd04101          43 EVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLA  120 (164)
T ss_pred             EEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence            34444 6789999999    566666554   89999999999 9999999999999988765  679999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+++...+...++...+++++++||+++.|++++|..+++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            8777887777778888899999999999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04129 Rho2 Rho2 subfamily

Probab=99.73  E-value=1.1e-16  Score=130.81  Aligned_cols=117  Identities=23%  Similarity=0.322  Sum_probs=97.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+++..+.+.+||    ++|..+...   ++++++++|++ ++++|+.+. .|+..+++..  .++|++|||||+|+.
T Consensus        41 ~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~  118 (187)
T cd04129          41 DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLR  118 (187)
T ss_pred             EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhh
Confidence            466788889999999    556554433   89999999999 899999996 6999998755  579999999999995


Q ss_pred             C----------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 R----------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~----------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      .          .+.+..+++..+++..+. +||+|||++|.|++++|+.+++.+...++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         119 QDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             hCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccC
Confidence            4          345666788889999985 89999999999999999999988866553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.72  E-value=9.7e-17  Score=127.03  Aligned_cols=116  Identities=25%  Similarity=0.424  Sum_probs=101.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..+..++..+++++||    ++|..+...   ++|++|+|||+ +..+|+.+..|+.++..+.. .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~  118 (164)
T smart00175       40 KTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLE  118 (164)
T ss_pred             EEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcc
Confidence            3567788889999999    566655544   89999999999 99999999999999987653 589999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+++..+.+..+++..+++++++||+++.|++++|..|++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      119 DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            777778888888998899999999999999999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd01861 Rab6 Rab6 subfamily

Probab=99.72  E-value=7.4e-17  Score=127.60  Aligned_cols=113  Identities=26%  Similarity=0.427  Sum_probs=98.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|+.+...   ++|++++|||+ ++.+|+.+..|+..+.+... .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~  118 (161)
T cd01861          40 KTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc
Confidence            4567788889999999    677766654   99999999999 99999999999999876542 479999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+.+..++...+++..+++++++||+++.|++++|+.|++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            777788888888998889999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04123 Rab21 Rab21 subfamily

Probab=99.72  E-value=1.1e-16  Score=126.05  Aligned_cols=114  Identities=27%  Similarity=0.458  Sum_probs=100.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+.+.+||    ++|..+++.   ++|++++|||+ +.++|+.+..|+.++.+... .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~  118 (162)
T cd04123          40 KTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE  118 (162)
T ss_pred             EEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence            4566778889999999    567777665   89999999999 99999999999999987763 479999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..++..++++..+++++++||+++.|++++|.++++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         119 RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            7777778888888888999999999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.72  E-value=1.1e-16  Score=126.93  Aligned_cols=115  Identities=26%  Similarity=0.401  Sum_probs=101.6

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+++.|||    ++|+.++..   ++|++|+|||. +.++|+.+..|+..+..... ...|+++++||+|+
T Consensus        40 ~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~  118 (163)
T cd01860          40 TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADL  118 (163)
T ss_pred             EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            35778889999999999    667766654   89999999999 99999999999999987653 67999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...+.+..++...++...+++++++||++|.|++++|..|++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            87777788888888998899999999999999999999999765

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.72  E-value=2.5e-16  Score=126.50  Aligned_cols=113  Identities=18%  Similarity=0.335  Sum_probs=94.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++++|+.+. .|+..+++..  .+.|+++|+||+|+
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  117 (175)
T cd01870          40 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL  117 (175)
T ss_pred             EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhc
Confidence            4567888999999999    677776644   89999999999 899999985 6988887654  68999999999998


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...            ..+...+++++++..+. ++++|||++|.|++++|..|++.+
T Consensus       118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            642            23456778888888775 899999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.72  E-value=2.2e-16  Score=124.83  Aligned_cols=116  Identities=24%  Similarity=0.380  Sum_probs=100.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|..++..   +++++++|||+ ++.+|..+..|...+.......+.|+++|+||+|+.
T Consensus        39 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~  118 (164)
T cd04139          39 KKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE  118 (164)
T ss_pred             EEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence            4567788899999999    566666554   89999999999 999999999999998876544689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .......++...+++.++++++++||++|.|++++|+.+++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         119 DKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             cccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            76666777788888888999999999999999999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01863 Rab18 Rab18 subfamily

Probab=99.71  E-value=2.2e-16  Score=125.01  Aligned_cols=112  Identities=25%  Similarity=0.418  Sum_probs=96.7

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++..+.+++||    ++|..+...   ++|++++|||+ ++.+|+.+..|+..+.++....+.|+++|+||+|+..
T Consensus        41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~  120 (161)
T cd01863          41 TLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN  120 (161)
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence            456778889999999    566666544   89999999999 9999999999999998887667899999999999973


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                       ..+..++...+++..+++++++||++|.|++++|..+++.
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         121 -REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             -cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence             3455667888888899999999999999999999998864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.70  E-value=1.9e-16  Score=127.51  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=95.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..   ..+.|+++|+||+|+.
T Consensus        45 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          45 NTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLD  121 (169)
T ss_pred             EEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEccccc
Confidence            4678889899999999    677777765   99999999999 99999999999987643   2579999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+...+..++++.++++ ++++||+++.|++++|..+++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         122 EQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             ccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            66655555667788888874 799999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.69  E-value=6.5e-16  Score=123.34  Aligned_cols=118  Identities=19%  Similarity=0.287  Sum_probs=100.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~   71 (238)
                      +.+.+++..+.+++||    +.|..++..   ++|++|+|||+ ++.+|+.+..|..++.....   ..+.|+++|+||+
T Consensus        40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (172)
T cd01862          40 KEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI  119 (172)
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence            4577888899999999    567766655   89999999999 89999999999988766542   2479999999999


Q ss_pred             cCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         72 DLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      |+..++.+..++.+.+.+..+ .+++++||++|.|++++|..+++.+.+.
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            998766677778888888887 7999999999999999999999888765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.69  E-value=8.9e-16  Score=124.05  Aligned_cols=120  Identities=23%  Similarity=0.330  Sum_probs=103.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+.+++||    ++|+.++..   +++++++|||+ +..+|+.+..|...+.+.....+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  119 (180)
T cd04137          40 KIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH  119 (180)
T ss_pred             EEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence            4567778889999999    667766654   89999999999 999999999999988776544688999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..++...+++.++++++++||+++.|++++|.++++.+.....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         120 TQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            777777777888888889999999999999999999999998876653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04114 Rab30 Rab30 subfamily

Probab=99.68  E-value=7.1e-16  Score=123.03  Aligned_cols=114  Identities=24%  Similarity=0.432  Sum_probs=98.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   .+|++++|||+ +..+|+.+..|+.++.... ..+.|+++|+||+|+.
T Consensus        47 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~  125 (169)
T cd04114          47 KTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLA  125 (169)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence            3567888899999999    566665443   89999999999 9999999999999987754 2579999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+..+.+.+....+++++||++|.|++++|+.|++.+
T Consensus       126 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         126 ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             cccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8788887777888888889999999999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.68  E-value=8.3e-16  Score=126.80  Aligned_cols=117  Identities=21%  Similarity=0.263  Sum_probs=96.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|+.++..   ++|++|+|||+ +..+|+.+..|+..+.+.....+.|++||+||.|+.
T Consensus        38 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  117 (198)
T cd04147          38 KEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL  117 (198)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence            3567788889999999    666666544   99999999999 999999999999999887655689999999999996


Q ss_pred             C-cccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 R-ARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~-~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      . .+.+..++..+.+. ..+.+++++||++|.|++++|+++++.+..
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         118 EEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             cccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            5 45555555554443 456889999999999999999999988763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.67  E-value=1.2e-16  Score=128.06  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +.+++..+++++||    ++|+.++..   ++|++|+|||. ++.+|..++.|+.++.+..  .++|+++|+||+|+...
T Consensus        37 ~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~  114 (164)
T cd04162          37 VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAA  114 (164)
T ss_pred             EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCC
Confidence            34566679999999    788888776   99999999999 9999999999999986543  68999999999999876


Q ss_pred             ccccH----HHHHHHHHhCCCeEEEEccCC------CCCHHHHHHHHH
Q psy14042         77 RAVSS----QDAKNLAASFKVKFIEVSVGI------HHNVDELLVGIL  114 (238)
Q Consensus        77 ~~v~~----~~~~~~~~~~~~~~~evSA~t------~~gv~elf~~i~  114 (238)
                      +.++.    .++..++++.++.++++||++      ++||+++|..++
T Consensus       115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence            54432    234566677789999999998      999999999886

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.66  E-value=6e-16  Score=124.32  Aligned_cols=111  Identities=19%  Similarity=0.188  Sum_probs=89.2

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      ...+.+++||    ++|+.++..   ++|++++|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+..  .+.
T Consensus        40 ~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~  117 (169)
T cd04158          40 YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALS  117 (169)
T ss_pred             ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCC
Confidence            3458899999    677777654   99999999999 9999999999999987644335689999999999964  355


Q ss_pred             HHHHHHHHHhCC------CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         81 SQDAKNLAASFK------VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        81 ~~~~~~~~~~~~------~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .+++..+++..+      +.+++|||++|.||+++|.+|++.+.+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence            666666654322      36889999999999999999998876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00876 Ras Ras family

Probab=99.65  E-value=1.9e-15  Score=118.77  Aligned_cols=114  Identities=22%  Similarity=0.347  Sum_probs=98.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    +.|..+...   ++|++++|||+ +++++..+..|...+.+.......|+++|+||+|+.
T Consensus        38 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  117 (160)
T cd00876          38 KTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE  117 (160)
T ss_pred             EEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence            3456777889999999    555555544   99999999999 899999999999998876544589999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+.+..+++..+++..+.+++++||+++.|++++|+.|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         118 NERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             ccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            877788888999999889999999999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.65  E-value=4.7e-16  Score=125.14  Aligned_cols=104  Identities=17%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+++++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.......++|++||+||+|+...  +..
T Consensus        51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~  128 (168)
T cd04149          51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKP  128 (168)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCH
Confidence            458999999    778877655   99999999999 89999999888887765332357899999999999642  445


Q ss_pred             HHHHHHHHh-----CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         82 QDAKNLAAS-----FKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        82 ~~~~~~~~~-----~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ++++...+.     ..++++++||++|.|++++|++|.+
T Consensus       129 ~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         129 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            566554421     2357899999999999999999874

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.64  E-value=8.5e-16  Score=125.26  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      ...+.++|||    ++|+.++..   ++|++|+|||+ ++++|..+..++.++.......+.|++||+||+|++...  .
T Consensus        58 ~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~  135 (181)
T PLN00223         58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N  135 (181)
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--C
Confidence            3458899999    788888765   99999999999 999999998888877543323679999999999997543  3


Q ss_pred             HHHHHHHHHhC-----CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         81 SQDAKNLAASF-----KVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        81 ~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .++..+...-.     .+.++++||++|+||+++|++|++.+..
T Consensus       136 ~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            33333322211     1246689999999999999999988754

>cd01893 Miro1 Miro1 subfamily

Probab=99.63  E-value=4.7e-15  Score=118.58  Aligned_cols=112  Identities=17%  Similarity=0.203  Sum_probs=86.8

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      +.+++..+++++||    ++++..+..   ++|++++|||+ ++.+|+.+. .|+..++...  .+.|+++|+||+|+.+
T Consensus        40 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~  117 (166)
T cd01893          40 ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRD  117 (166)
T ss_pred             eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccc
Confidence            45667889999999    445443332   99999999999 999999985 6888887655  5899999999999976


Q ss_pred             cccc--cHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         76 ARAV--SSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        76 ~~~v--~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .+..  ..+++..+++.+.  .+++++||+++.|++++|..+.+.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence            5543  2334444444443  38999999999999999999987664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.63  E-value=4.8e-16  Score=123.83  Aligned_cols=104  Identities=20%  Similarity=0.242  Sum_probs=79.6

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.......+.|++|++||+||....  ..
T Consensus        42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  119 (159)
T cd04150          42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SA  119 (159)
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CH
Confidence            458899999    778777755   99999999999 899999999888887654333578999999999996432  22


Q ss_pred             HHH-HHHH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         82 QDA-KNLA----ASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        82 ~~~-~~~~----~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ++. ..+.    ...++.++++||++|.|++++|++|.+
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            222 2221    123456889999999999999999863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.62  E-value=1.1e-14  Score=116.04  Aligned_cols=110  Identities=19%  Similarity=0.382  Sum_probs=90.8

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+..++..+.+++||    ++|..+...   .+|++++|||+ ++.+|... ..|+..+..+.  .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~  117 (171)
T cd00157          40 TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLR  117 (171)
T ss_pred             EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhh
Confidence            456678889999999    555555444   89999999999 88999887 45888887655  589999999999997


Q ss_pred             Ccc-----------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHH
Q psy14042         75 RAR-----------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        75 ~~~-----------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ...           .+..+++..++...++ +|+++||++|.|++++|..|++
T Consensus       118 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         118 DDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            544           3456778888888887 9999999999999999999874

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.62  E-value=9.3e-16  Score=124.11  Aligned_cols=106  Identities=18%  Similarity=0.223  Sum_probs=81.9

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+++++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+||....  ..
T Consensus        55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  132 (175)
T smart00177       55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KA  132 (175)
T ss_pred             CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CH
Confidence            358899999    788887755   99999999999 999999999999888654323578999999999997532  22


Q ss_pred             HHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         82 QDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        82 ~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ++.....     +...+.++++||++|.|++++|++|.+.+
T Consensus       133 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      133 AEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            2322221     12234577999999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.62  E-value=4.1e-15  Score=121.18  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=91.7

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+.+++||    ++|+.++..   ++|++|+|||. +..+|+.+..|+.++.+.....+.|++||+||+|+...  +
T Consensus        48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~  125 (183)
T cd04152          48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--L  125 (183)
T ss_pred             CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--C
Confidence            34678999999    678887766   89999999999 88999999999998877654468999999999999642  3


Q ss_pred             cHHHHHHHHHh------CCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         80 SSQDAKNLAAS------FKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        80 ~~~~~~~~~~~------~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      ..++...+...      .+++++++||++|.|++++|..|++.+.+.++..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML  176 (183)
T ss_pred             CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence            34444444321      2356899999999999999999999997766543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.60  E-value=5.8e-15  Score=118.84  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.++  .+.+++||    ++|+.++..   ++|++++|||. ++.+|.....|+..+.......+.|+++|+||+|+..
T Consensus        52 ~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154          52 TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG  129 (173)
T ss_pred             EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence            34554  37899999    666766654   99999999999 8899999999998886543336899999999999975


Q ss_pred             cccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         76 ARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        76 ~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ..  ..+++..+.+     ..+++++++||++|.|++++|.+++
T Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         130 AL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             CC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence            43  3444544442     3467899999999999999999986

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.60  E-value=1.8e-15  Score=123.45  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=82.8

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+.+++||    ++|+.++..   ++|++|+|||+ ++++|..+..++.++.......+.|++||+||.|+....  ..
T Consensus        59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  136 (182)
T PTZ00133         59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--ST  136 (182)
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CH
Confidence            458899999    678877655   99999999999 999999998888877543323578999999999996432  22


Q ss_pred             HHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         82 QDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        82 ~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ++.....     ....+.++++||++|.|++++|++|++.+..+
T Consensus       137 ~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        137 TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            2222211     11234577999999999999999999887654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.59  E-value=3.2e-14  Score=118.68  Aligned_cols=115  Identities=14%  Similarity=0.284  Sum_probs=95.7

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++..+++.+.+++||    ++|+.++..   +++++|+|||+ ++.+|..+..|+..+.+..  .+.|+++||||+|+..
T Consensus        50 ~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         50 KFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc
Confidence            344578899999999    677777654   89999999999 9999999999999998765  6799999999999964


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      . .+..+. ..+++..++.|+++||++|.|++++|.+|++.+...+.
T Consensus       128 ~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        128 R-QVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             c-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Confidence            3 333333 35677788999999999999999999999999876554

>cd00154 Rab Rab family

Probab=99.59  E-value=2e-14  Score=112.03  Aligned_cols=111  Identities=29%  Similarity=0.492  Sum_probs=94.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+.+.+||    +.|+.+...   ++|++|+|||. ++++++.+..|+..+..... ...|+++++||+|+.
T Consensus        40 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~  118 (159)
T cd00154          40 KTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLE  118 (159)
T ss_pred             EEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEccccc
Confidence            3456667789999999    455555544   89999999999 88999999999999887542 579999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      .......++...++...+.+++++||+++.|++++|..|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            6677778888899988999999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.56  E-value=1.9e-14  Score=131.48  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=111.0

Q ss_pred             CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t  102 (238)
                      .++++|+|+|+ +.   ++++++..|+.+|..+... .++|++||+||+||...    .+..+.+++..+.+++++||++
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~t  311 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALT  311 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCC
Confidence            79999999999 53   7899999999999988643 58999999999998532    2345666677778899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEE
Q psy14042        103 HHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLF  181 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~  181 (238)
                      ++|+++++..|.+.+.+.+................ .......+.+....+|. +|.|+.+++ ++.+++|+.++++.+|
T Consensus       312 geGI~eL~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~  389 (424)
T PRK12297        312 GQGLDELLYAVAELLEETPEFPLEEEEVEEEVYYK-FEEEEKDFTITRDEDGVFVVSGEKIER-LFKMTNFNRDESLRRF  389 (424)
T ss_pred             CCCHHHHHHHHHHHHHhCccccccccccccccccc-ccccCCCcEEEECCCCcEEEeChHHHH-HHhhccCCCHHHHHHH
Confidence            99999999999998877654321101111111111 11123456666566777 999999998 9999999999998776


Q ss_pred             E
Q psy14042        182 A  182 (238)
Q Consensus       182 g  182 (238)
                      .
T Consensus       390 ~  390 (424)
T PRK12297        390 A  390 (424)
T ss_pred             H
Confidence            4

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.55  E-value=3.9e-14  Score=117.63  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhc------------------CCCCC
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEG------------------YLRTR   62 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~------------------~~~~~   62 (238)
                      ++.+.++|||    ++|+.++..   ++|++|+|||+ ++.||+++..|+.++.+..                  ...++
T Consensus        51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (202)
T cd04102          51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI  130 (202)
T ss_pred             CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence            5789999999    888887765   99999999999 9999999999999997642                  12478


Q ss_pred             CEEEEEEeccCCCcccccHHH----HHHHHHhCCCeEEEEccCCC
Q psy14042         63 PAIIVANKIDLARARAVSSQD----AKNLAASFKVKFIEVSVGIH  103 (238)
Q Consensus        63 piilVgNK~DL~~~~~v~~~~----~~~~~~~~~~~~~evSA~t~  103 (238)
                      |++|||||+||..++.++.+.    ...+|++.+++.++.+++..
T Consensus       131 PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~  175 (202)
T cd04102         131 PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG  175 (202)
T ss_pred             eEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence            999999999998777666653    34568889999999988865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.55  E-value=1.3e-14  Score=116.39  Aligned_cols=105  Identities=18%  Similarity=0.172  Sum_probs=82.6

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH-
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS-   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~-   81 (238)
                      .+++++||    ++|+.++..   ++|++|+|||. ++.+|+.+..|+..+.+.....+.|++||+||+|++..+.... 
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i  121 (167)
T cd04161          42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV  121 (167)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHH
Confidence            48899999    678877765   99999999999 8899999999999987754446899999999999976542211 


Q ss_pred             ---HHHHHHHHhCC--CeEEEEccCCC------CCHHHHHHHHHH
Q psy14042         82 ---QDAKNLAASFK--VKFIEVSVGIH------HNVDELLVGILN  115 (238)
Q Consensus        82 ---~~~~~~~~~~~--~~~~evSA~t~------~gv~elf~~i~~  115 (238)
                         ..+..++++.+  +.+++|||++|      .|+++.|+||.+
T Consensus       122 ~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence               12233443333  56888999998      899999999973

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.54  E-value=3.2e-14  Score=131.84  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=108.4

Q ss_pred             CceEEEEEEEC-C----cchHHHHHHHHHHHHHhcC----------CCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC
Q psy14042         28 DETGLIIVWML-Y----KPSYHRVEQDVIRLHEEGY----------LRTRPAIIVANKIDLARARAVSSQDAKNLAASFK   92 (238)
Q Consensus        28 ~ad~~IlV~dv-d----~~s~~~~~~~~~~l~~~~~----------~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~   92 (238)
                      .++++|+|+|+ +    +++++++..|..+|..+..          ..++|+|||+||+|+...+.+.. ......+..+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcC
Confidence            79999999999 5    4688888888888877752          25799999999999975544322 2333334568


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeeccc--Cc-eeeecccceeeeEE
Q psy14042         93 VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVD--GN-RIWGKEFKKTSMLG  169 (238)
Q Consensus        93 ~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-rv~g~~~~~~~~~~  169 (238)
                      +++|++||+++.|+++++..|.+.+...+..... ... .......+......+.+....+  |. +|.|+.+++ ++.+
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~g~~~e~-~~~~  391 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARAAEPE-AEP-TRIVIRPKAVDDAGFTVERDGDGEGGFRVRGEKPER-WVRQ  391 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCc-ccc-ccccccccccccCCcEEEeCCCCCCcEEEeCchHHH-HHhc
Confidence            8999999999999999999999998776543211 111 1001111111234466665555  66 999999999 9999


Q ss_pred             EEeCCCCCeEEEE
Q psy14042        170 VQWTSDSQNLLFA  182 (238)
Q Consensus       170 ~~~~~~~~~~~~g  182 (238)
                      ++|++++++.||.
T Consensus       392 ~~~~~~e~~~~~~  404 (500)
T PRK12296        392 TDFDNDEAVGYLA  404 (500)
T ss_pred             cCCCCHHHHHHHH
Confidence            9999999987774

>cd04157 Arl6 Arl6 subfamily

Probab=99.52  E-value=2.5e-14  Score=113.00  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARARA   78 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~~~   78 (238)
                      ...+++++||    ++|+.++..   ++|++|+|+|. ++.+|.....|+..+.+...  ..+.|+++|+||+|+.....
T Consensus        42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~  121 (162)
T cd04157          42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT  121 (162)
T ss_pred             ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC
Confidence            3458899999    777777665   99999999999 89999999999888866432  25799999999999975321


Q ss_pred             ccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         79 VSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        79 v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                        .++......     ...++++++||++|.|++++|.+|.+
T Consensus       122 --~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         122 --AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             --HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence              222222211     12346899999999999999999874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.52  E-value=7.1e-14  Score=113.93  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++  +.+.+||    ++++.++..   +++++++|+|+ +..+|.....|+.++.+.....+.|+++++||+|+..
T Consensus        57 ~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          57 ELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG  134 (190)
T ss_pred             EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence            345554  6789999    556665543   99999999999 8999999988988887654346799999999999964


Q ss_pred             cccccHHHHHHHHHh----------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         76 ARAVSSQDAKNLAAS----------------FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~----------------~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                        .+..++++.+...                ..+++++|||++|+|++++|++|++.
T Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         135 --AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             --CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence              4555666665542                22469999999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.52  E-value=5.3e-14  Score=111.18  Aligned_cols=104  Identities=13%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+.+.+||    ++|+.++..   ++|++|+|+|. +..+|..+..|+.++.+.....+.|+++|+||+|+....  ..
T Consensus        42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~  119 (160)
T cd04156          42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TA  119 (160)
T ss_pred             CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CH
Confidence            458899999    566665544   89999999999 888999999999988764433689999999999996421  22


Q ss_pred             HHHHH------HHHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         82 QDAKN------LAASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        82 ~~~~~------~~~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ++...      ++...++++++|||++|.|++++|+.|++
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            22222      22224567999999999999999999863

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG4252|consensus

Probab=99.52  E-value=1.3e-15  Score=121.37  Aligned_cols=118  Identities=18%  Similarity=0.349  Sum_probs=108.4

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+++++..+++.+||    |.|.+++..   +|++.++||+. |+.||+.+..|.+++....  .++|.++|-||+||.+
T Consensus        61 qi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlve  138 (246)
T KOG4252|consen   61 QIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVE  138 (246)
T ss_pred             HHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhH
Confidence            456667778889999    889999766   99999999999 9999999999999998876  8999999999999999


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      +..+...+.+.+++...+.+|.+|++...||-.+|..|++.+.+....
T Consensus       139 ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  139 DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877655

>cd04151 Arl1 Arl1 subfamily

Probab=99.51  E-value=2.3e-14  Score=113.50  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      ...+++++||    ++|+.++..   ++|++|+|+|. ++.++.....++..+.+.....+.|++||+||+|+....  .
T Consensus        40 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~  117 (158)
T cd04151          40 YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--S  117 (158)
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--C
Confidence            3458899999    677777655   99999999999 888888777766665443223579999999999997432  1


Q ss_pred             HHHHHH-HH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         81 SQDAKN-LA----ASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        81 ~~~~~~-~~----~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ..+..+ +.    +..+.+++++||++|.|++++|+.|++
T Consensus       118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            222222 11    122457999999999999999999974

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.51  E-value=8.4e-14  Score=112.39  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+++.+||    ++|+.++..   ++|++|+|+|. ++++|...+.++.++.+.....++|+++++||+|+...  +..+
T Consensus        58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~  135 (174)
T cd04153          58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPA  135 (174)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHH
Confidence            48899999    667666654   99999999999 88999999888888766543467999999999999652  2233


Q ss_pred             HH-HHHH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         83 DA-KNLA----ASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        83 ~~-~~~~----~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +. ..+.    +..+++++++||++|.|++++|.+|++
T Consensus       136 ~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         136 EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            32 2222    234568999999999999999999973

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.49  E-value=1e-13  Score=109.37  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=81.3

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+.+||    ++|+.++..   ++|++++|||+ ++++|.....|+..+.+.....+.|+++|+||+|+....  ..+
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~  119 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS  119 (158)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence            47899999    666666654   99999999999 888999999999888765444789999999999997643  222


Q ss_pred             HHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         83 DAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        83 ~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +.....     ....++++++||++|.|++++|..|..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            333322     224568999999999999999999874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.48  E-value=3.4e-13  Score=107.25  Aligned_cols=103  Identities=20%  Similarity=0.253  Sum_probs=80.9

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+.+||    ++|+.++..   ++|++++|+|. +.+++.....|+..+.+.....+.|+++|+||+|+...  ...+
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~  126 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE  126 (167)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence            47899999    566666544   99999999999 88899999999998876543468999999999998653  2333


Q ss_pred             HHHHHHHh-------CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         83 DAKNLAAS-------FKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        83 ~~~~~~~~-------~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +...+.+.       .+++++++||++|.|+++++++|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            44443322       3468999999999999999999974

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.44  E-value=9.5e-13  Score=112.46  Aligned_cols=92  Identities=20%  Similarity=0.258  Sum_probs=77.6

Q ss_pred             CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042         19 EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV   93 (238)
Q Consensus        19 e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~   93 (238)
                      |||+.|.+.   ++|++++|||+ ++. +|+.+..|+..+..    .++|++||+||+||...+++..++...+. ..++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCC
Confidence            899988876   99999999999 666 99999999987754    67999999999999766655555555554 4789


Q ss_pred             eEEEEccCCCCCHHHHHHHHHH
Q psy14042         94 KFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        94 ~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +++++||++|.|++++|..+..
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhcC
Confidence            9999999999999999998763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01890 LepA LepA subfamily

Probab=99.44  E-value=9.6e-13  Score=105.93  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=78.7

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+.+++||    ++|+.++..   ++|++|+|||. +..+++....|.... .    .++|+++|+||+|+...+  
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--  135 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--  135 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--
Confidence            66789999999    677666554   99999999999 777777766664322 2    568999999999996432  


Q ss_pred             cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+...++++.+++   +++++||++|.|++++|..|++.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            22234456666665   489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.44  E-value=1e-12  Score=116.96  Aligned_cols=94  Identities=19%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      .++++|+|+|+ +.++++++..|..++..+... .++|+++|+||+|+.....+..+....+++..+.+++++||++++|
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            79999999999 777999999999999888643 5799999999999976655554455555666778999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14042        106 VDELLVGILNQIRLKR  121 (238)
Q Consensus       106 v~elf~~i~~~l~~~~  121 (238)
                      ++++|..|.+.+.+.+
T Consensus       316 I~eL~~~L~~~l~~~~  331 (335)
T PRK12299        316 LDELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998886644

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.43  E-value=9.7e-13  Score=104.73  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             CceEEEEEEEC-Ccch--HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPS--YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s--~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      .+|++|+|+|. ++.+  ++....|+..+++..  .+.|+++|+||+|+...+.+..  ...+++..+.+++++||++|.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence            46899999999 6654  466677888887643  5899999999999976554433  445555567889999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy14042        105 NVDELLVGILNQI  117 (238)
Q Consensus       105 gv~elf~~i~~~l  117 (238)
                      |++++|+.+.+.+
T Consensus       155 gi~~l~~~l~~~~  167 (168)
T cd01897         155 GVDEVKNKACELL  167 (168)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PLN00023 GTP-binding protein; Provisional

Probab=99.41  E-value=1.4e-12  Score=114.72  Aligned_cols=85  Identities=19%  Similarity=0.264  Sum_probs=71.8

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-----------CCCCCEEEEEE
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-----------LRTRPAIIVAN   69 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-----------~~~~piilVgN   69 (238)
                      ++.+.++|||    ++|+.++..   +++++|+|||+ ++.+|+++..|+.++.+...           ..++|++||||
T Consensus        80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN  159 (334)
T PLN00023         80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN  159 (334)
T ss_pred             CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence            3579999999    899998876   99999999999 99999999999999987631           13589999999


Q ss_pred             eccCCCcc---c---ccHHHHHHHHHhCCC
Q psy14042         70 KIDLARAR---A---VSSQDAKNLAASFKV   93 (238)
Q Consensus        70 K~DL~~~~---~---v~~~~~~~~~~~~~~   93 (238)
                      |+||..++   .   +..++++++|++.++
T Consensus       160 K~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        160 KADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             CccccccccccccccccHHHHHHHHHHcCC
Confidence            99997543   2   357899999998873

>cd01898 Obg Obg subfamily

Probab=99.41  E-value=2.1e-12  Score=102.82  Aligned_cols=104  Identities=19%  Similarity=0.120  Sum_probs=79.7

Q ss_pred             EEEEEEe-C-------CCcccccC------CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCC
Q psy14042         12 VRAIIWN-E-------QYEKLTSS------DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLA   74 (238)
Q Consensus        12 v~l~iWD-e-------~~~~l~~~------~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~   74 (238)
                      +.+.+|| .       .++.+...      .+|++++|+|. +. ++++.+..|.+++...... ...|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            5899999 1       11222221      69999999999 78 7999999999999876432 578999999999997


Q ss_pred             CcccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ....+. +....+... .+.+++++||+++.|++++|+.+++.
T Consensus       128 ~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            655443 334444555 47889999999999999999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.40  E-value=5.3e-12  Score=102.33  Aligned_cols=109  Identities=25%  Similarity=0.338  Sum_probs=87.1

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +..++  +++.+||    +.++.+|+.   ++|++|+|.|. +.+.+......+.++.......+.|+++++||.|++..
T Consensus        53 i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   53 IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred             eeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence            44544  6789999    678899987   99999999999 89999999998888877554478999999999998753


Q ss_pred             ccccHHHHHHHHH------hCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         77 RAVSSQDAKNLAA------SFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        77 ~~v~~~~~~~~~~------~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                        ...++......      ...+.++.|||.+|+|+.+.|++|.+++
T Consensus       131 --~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  131 --MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             --STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             --chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence              33444443321      3456789999999999999999999764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.39  E-value=2.1e-12  Score=105.37  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+++.+||    ++++.++..   ++|++|+|+|. ++++|.....++.++.+.....+.|+++|+||+|++.  .++.+
T Consensus        60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~  137 (184)
T smart00178       60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED  137 (184)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence            37889999    566666655   99999999999 9999999998888876543336799999999999964  34555


Q ss_pred             HHHHHHHh------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         83 DAKNLAAS------------FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        83 ~~~~~~~~------------~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ++++....            ....+++|||++|.|+++++++|...
T Consensus       138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            55443311            13458999999999999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073|consensus

Probab=99.38  E-value=5.4e-12  Score=99.41  Aligned_cols=115  Identities=21%  Similarity=0.256  Sum_probs=94.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      |+++..+  ++++|||    -.+|+.|+.   .+||+|+|+|. |+..|+.....+.++.........|+++++||.|++
T Consensus        53 ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   53 KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence            3445544  8999999    677888877   99999999999 999999999988888775545789999999999997


Q ss_pred             C---cccccH-HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 R---ARAVSS-QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~---~~~v~~-~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .   .+++.+ -....+++...++.+-|||.+|+++.+.+.+++..+.+
T Consensus       131 ~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  131 GALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             cccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence            3   222322 24556667888999999999999999999999988876

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.34  E-value=4e-12  Score=99.10  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=78.3

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+.+||    ++|+.++..   ++|++++|+|+ +..+|.....|+.++.......+.|+++|+||+|+.......  
T Consensus        43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--  120 (159)
T cd04159          43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD--  120 (159)
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH--
Confidence            38899999    566666554   99999999999 888999888888887654333688999999999987543221  


Q ss_pred             HHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         83 DAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        83 ~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +....     .....++++++||++|.|++++|..|++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            11111     1123468999999999999999999874

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0070|consensus

Probab=99.31  E-value=1.7e-11  Score=98.40  Aligned_cols=112  Identities=21%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++++.  ++++.+||    +++|.+|..   +++++|+|.|. |++.+..++..+..+.......+.|+++.+||.|++.
T Consensus        55 ~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~  132 (181)
T KOG0070|consen   55 TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG  132 (181)
T ss_pred             EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence            34444  69999999    999999988   99999999999 9999999999998888776568999999999999975


Q ss_pred             cccccHHHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         76 ARAVSSQDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        76 ~~~v~~~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .-.  ..++...     .....+.+..|+|.+|+|+.|.++++...+..
T Consensus       133 als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  133 ALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cCC--HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            432  2233222     22345668899999999999999999987754

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.28  E-value=2.9e-11  Score=107.57  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=74.0

Q ss_pred             CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t  102 (238)
                      .++++|+|+|+ +.   ++++.+..|..++..+... .+.|++||+||+|+..... ..+..+.+++..+.+++++||++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            79999999999 65   7999999999999887532 5799999999999976543 23445566667788999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy14042        103 HHNVDELLVGILNQI  117 (238)
Q Consensus       103 ~~gv~elf~~i~~~l  117 (238)
                      ++|+++++..|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG1673|consensus

Probab=99.28  E-value=4.7e-11  Score=93.42  Aligned_cols=119  Identities=15%  Similarity=0.261  Sum_probs=98.6

Q ss_pred             CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      |.|++.+.|..+.+.|||    ++|..+.+.   ++-+++++||+ .+.++..+..|+.+.+... ...+| |+||+|.|
T Consensus        58 mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD  135 (205)
T KOG1673|consen   58 MDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYD  135 (205)
T ss_pred             eeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchH
Confidence            679999999999999999    888888877   99999999999 9999999999999987654 13344 68999999


Q ss_pred             CC-----CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         73 LA-----RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        73 L~-----~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +-     +.++-...+++..|+..+.+.|.||+..+.||..+|.-+...+...+
T Consensus       136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence            73     22222334778889999999999999999999999998887775543

>cd04155 Arl3 Arl3 subfamily

Probab=99.28  E-value=3.2e-11  Score=96.49  Aligned_cols=105  Identities=20%  Similarity=0.270  Sum_probs=76.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+..++  ..+.+||    +++..++..   +++++++|+|+ +..+|.....|+..+.+.....++|+++++||+|+..
T Consensus        52 ~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (173)
T cd04155          52 TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT  129 (173)
T ss_pred             EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence            344454  6789999    344444433   89999999999 8889998888887776543336799999999999965


Q ss_pred             cccccHHHHHHHHHhCC--------CeEEEEccCCCCCHHHHHHHHHH
Q psy14042         76 ARAVSSQDAKNLAASFK--------VKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~--------~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ...  .   ..+.+..+        .+++++||++|+|++++|++|++
T Consensus       130 ~~~--~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         130 AAP--A---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCC--H---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            332  1   12222222        25789999999999999999974

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.23  E-value=6.6e-11  Score=94.50  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=70.6

Q ss_pred             CceEEEEEEEC-Cc------chHHHHHHHHHHHHHhcCC------CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe
Q psy14042         28 DETGLIIVWML-YK------PSYHRVEQDVIRLHEEGYL------RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK   94 (238)
Q Consensus        28 ~ad~~IlV~dv-d~------~s~~~~~~~~~~l~~~~~~------~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~   94 (238)
                      ++|++++|+|. +.      .+++....|..++......      .+.|+++|+||+|+..................+.+
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE  153 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence            89999999999 76      5898888898888765421      47999999999999766554443333444556778


Q ss_pred             EEEEccCCCCCHHHHHHHHHHH
Q psy14042         95 FIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        95 ~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ++++||+++.|++++++.+++.
T Consensus       154 ~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         154 VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999999999998753

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG3883|consensus

Probab=99.23  E-value=1.2e-10  Score=91.03  Aligned_cols=110  Identities=20%  Similarity=0.228  Sum_probs=95.5

Q ss_pred             CeEEEEEEEe----CCC-cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          9 SGKVRAIIWN----EQY-EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         9 ~~~v~l~iWD----e~~-~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      |..=.|.++|    ..+ ..|-.+   -+|++++||+. |++||+.+..+..+|.+..+...+|++++|||+|+.+++++
T Consensus        57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v  136 (198)
T KOG3883|consen   57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV  136 (198)
T ss_pred             ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence            4445678899    333 333333   79999999999 99999999988888888877789999999999999999999


Q ss_pred             cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+|+...+..++++|.....+-+.|..++..+.
T Consensus       137 d~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~  175 (198)
T KOG3883|consen  137 DMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLH  175 (198)
T ss_pred             CHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhcc
Confidence            999999999999999999999999999999999987664

>cd04171 SelB SelB subfamily

Probab=99.22  E-value=8.4e-11  Score=92.69  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSS   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~   81 (238)
                      ...+++||    ++|......   ++|++++|+|.+..........+..+...   ...|+++|+||+|+.....  ...
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~  126 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL---GIKRGLVVLTKADLVDEDWLELVE  126 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh---CCCcEEEEEECccccCHHHHHHHH
Confidence            35789999    566443322   89999999999322222222222222221   2349999999999975432  122


Q ss_pred             HHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         82 QDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        82 ~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ++..+..+.   .+.+++++||+++.|++++|..+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            334444433   4678999999999999999998763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0075|consensus

Probab=99.19  E-value=4.9e-11  Score=92.51  Aligned_cols=113  Identities=17%  Similarity=0.231  Sum_probs=89.3

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc-
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA-   76 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~-   76 (238)
                      +++.+.+.+.+||    .+|+++|..   +.+++++|.|. |++.++..+.-+..+........+|+++.|||.|++.. 
T Consensus        59 k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL  138 (186)
T KOG0075|consen   59 KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL  138 (186)
T ss_pred             EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence            4567789999999    899999977   99999999999 99999999888888776554589999999999999753 


Q ss_pred             --ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         77 --RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        77 --~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                        ..+.+..+..-.....+..|.+|++...|++.+.++|+++-.
T Consensus       139 ~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  139 SKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             cHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence              111222222222334567899999999999999999997654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.19  E-value=2.1e-10  Score=95.35  Aligned_cols=117  Identities=23%  Similarity=0.321  Sum_probs=89.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++..++..+++++||    ++|+.++..   +++++++|||. + ..+++....|..++....+ .+.|+++|+||+||.
T Consensus        46 ~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~  124 (219)
T COG1100          46 TIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLF  124 (219)
T ss_pred             EEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccc
Confidence            344455588999999    888888866   99999999999 6 6777777899999887653 579999999999998


Q ss_pred             Cccc------------ccHHHHHHHHHh---CCCeEEEEccC--CCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARA------------VSSQDAKNLAAS---FKVKFIEVSVG--IHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~------------v~~~~~~~~~~~---~~~~~~evSA~--t~~gv~elf~~i~~~l~~~~  121 (238)
                      ....            .........+..   ....++++|++  ++.++.++|..+.+.+....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             cchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence            6632            222222222222   23349999999  99999999999999987654

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.18  E-value=3.7e-10  Score=87.22  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc-chHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK-PSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+..++..+.+.+||    ++|+.++..   ++++++.++|+ .. .++.... .|...+..... .+.|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  120 (161)
T TIGR00231        42 VIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDL  120 (161)
T ss_pred             EEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccC
Confidence            356677778999999    566666554   88999999999 55 7777765 77777776653 28899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI  113 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i  113 (238)
                      .... ........+......+++++||+++.|++++|..|
T Consensus       121 ~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231       121 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             Ccch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            7644 33333344444456789999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.18  E-value=1.1e-10  Score=96.42  Aligned_cols=83  Identities=24%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++++|+|. ++.++.....|...+.... ..+.|+++|+||+|+.......     ..+...+.+++++||+++.|+
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi  193 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGL  193 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCH
Confidence            79999999999 8888888888887776543 3578999999999997544322     334455678999999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        107 DELLVGILNQ  116 (238)
Q Consensus       107 ~elf~~i~~~  116 (238)
                      +++|..|.+.
T Consensus       194 ~~l~~~L~~~  203 (204)
T cd01878         194 DELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.18  E-value=7.1e-11  Score=91.63  Aligned_cols=78  Identities=22%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      ++|++|+|||+ ++.++.. ..|...       ...|+++|+||+||.. +....+++.++++..+. +++++||++|.|
T Consensus        62 ~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  132 (142)
T TIGR02528        62 DADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQG  132 (142)
T ss_pred             cCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            99999999999 8888765 334332       1249999999999965 33455667777777776 799999999999


Q ss_pred             HHHHHHHHH
Q psy14042        106 VDELLVGIL  114 (238)
Q Consensus       106 v~elf~~i~  114 (238)
                      ++++|..++
T Consensus       133 i~~l~~~l~  141 (142)
T TIGR02528       133 LEALVDYLN  141 (142)
T ss_pred             HHHHHHHHh
Confidence            999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.17  E-value=5.7e-10  Score=85.05  Aligned_cols=109  Identities=29%  Similarity=0.474  Sum_probs=80.3

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR   77 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~   77 (238)
                      ...+....+.+||    ..+......   ++|++++|+|. +..++.....|.............|+++|+||+|+....
T Consensus        39 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          39 EVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             EECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence            3445678999999    333333222   89999999999 888898888874333333334789999999999997654


Q ss_pred             cccHHH-HHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         78 AVSSQD-AKNLAASFKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        78 ~v~~~~-~~~~~~~~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ...... ........+.+++++|+..+.|+++++++|.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            433332 3445556678999999999999999999886

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0096|consensus

Probab=99.16  E-value=4.1e-11  Score=96.61  Aligned_cols=109  Identities=17%  Similarity=0.294  Sum_probs=89.1

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      +.|++..||    |+|--+...   ++.++||+||+ .+-++.++..|..++.+..  .++||+++|||.|......  .
T Consensus        57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~--k  132 (216)
T KOG0096|consen   57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV--K  132 (216)
T ss_pred             CcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc--c
Confidence            369999999    788766665   99999999999 9999999999999998877  7799999999999875431  1


Q ss_pred             HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         82 QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ...-.+-...++.||++||+++.|.+..|.++++.+...+.
T Consensus       133 ~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~  173 (216)
T KOG0096|consen  133 AKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPS  173 (216)
T ss_pred             cccceeeecccceeEEeecccccccccchHHHhhhhcCCCC
Confidence            11122334457889999999999999999999988865543

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.16  E-value=1.3e-10  Score=95.48  Aligned_cols=101  Identities=14%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR   77 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~   77 (238)
                      +.++.+.+.+++||    ++|..+...   ++|++++|||.....+.....++..+..    .++|+++|+||+|+...+
T Consensus        58 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          58 TAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             eEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            34555678999999    677766554   9999999999933345555555555543    578999999999996533


Q ss_pred             c-ccHHHHHHHHH-------hCCCeEEEEccCCCCCHHHH
Q psy14042         78 A-VSSQDAKNLAA-------SFKVKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        78 ~-v~~~~~~~~~~-------~~~~~~~evSA~t~~gv~el  109 (238)
                      . ...++...+.+       ..+++++++||++|.|+.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            2 12334444442       23678999999999777433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.15  E-value=6.9e-10  Score=86.98  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             EEEECCeEEEEEEEe----CCCccc------cc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKL------TS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l------~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+++++  ..+.+||    +.|..+      ..     .++|++|+|+|. +....   ..|...+.+    .++|+++|
T Consensus        37 ~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv  107 (158)
T cd01879          37 RFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGLPVVVA  107 (158)
T ss_pred             EEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEE
Confidence            455655  5789999    444432      11     289999999999 54332   345555544    46899999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +||+|+.....+.. +...+++..+.+++++||.++.|++++|..+.+.
T Consensus       108 ~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         108 LNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             Eehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            99999976554443 3456777788999999999999999999999865

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.09  E-value=5.9e-10  Score=103.78  Aligned_cols=89  Identities=15%  Similarity=0.081  Sum_probs=65.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHH-HHHhCCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKN-LAASFKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~-~~~~~~~~~~evSA~t~  103 (238)
                      ++|++|+|+|. +..++++.. ++..+..    .+.|+|||+||+||.....  ....+... +.....++++++||++|
T Consensus       293 ~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g  367 (472)
T PRK03003        293 AAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG  367 (472)
T ss_pred             cCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence            89999999999 888888774 4454443    5789999999999964321  11122222 22223478999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q psy14042        104 HNVDELLVGILNQIRLKR  121 (238)
Q Consensus       104 ~gv~elf~~i~~~l~~~~  121 (238)
                      .|++++|..+.+.+....
T Consensus       368 ~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        368 RAVDKLVPALETALESWD  385 (472)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999998776443

>KOG4423|consensus

Probab=99.08  E-value=9.3e-11  Score=94.34  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=93.9

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEeccCCCccc
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKIDLARARA   78 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~~~   78 (238)
                      ..|++++||    |+|-.|+.-   .+.+..+|||+ ...+|+.+..|..++.....   ...+|+|+.+||||......
T Consensus        73 t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~  152 (229)
T KOG4423|consen   73 TIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK  152 (229)
T ss_pred             HHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh
Confidence            348899999    888778765   99999999999 89999999999999865432   24678999999999975433


Q ss_pred             cc-HHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         79 VS-SQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        79 v~-~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      .. .....++.+++|+. ++++|+|.+.+++|+-..+++++.-+..
T Consensus       153 ~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  153 NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence            32 46788889999975 9999999999999999999999876653

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.06  E-value=8.7e-10  Score=105.15  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=78.4

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+++++||    ++|...+..   .+|++|+|+|. +..+++....|...+.     .+.|+++|+||+|+....  
T Consensus        66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--  138 (595)
T TIGR01393        66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--  138 (595)
T ss_pred             CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--
Confidence            56779999999    667655544   99999999999 7666776666654332     468999999999996432  


Q ss_pred             cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ......++++.+++   +++++||++|.|++++|+.|++.++
T Consensus       139 ~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       139 PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            12233455555565   4899999999999999999998764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0071|consensus

Probab=99.06  E-value=4.2e-10  Score=86.77  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=86.7

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      +++++++||    ++.|.+|+.   ++.++|+|.|. +++..+.++.-+..+.+.....+.|+++.+||.|++...  ++
T Consensus        59 kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~p  136 (180)
T KOG0071|consen   59 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KP  136 (180)
T ss_pred             eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CH
Confidence            568999999    899999988   99999999999 999999998888887766656899999999999998643  33


Q ss_pred             HHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         82 QDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        82 ~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .++...     ++...+-+..+||.+|.|+.|-|.+|...+
T Consensus       137 qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  137 QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            333332     233446688999999999999999998654

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.04  E-value=9.6e-10  Score=98.64  Aligned_cols=82  Identities=24%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++|+|+|. ++.+++.+..|...+.... ..+.|+++|+||+|+.....+     .... ....+++++||++|.|+
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence            89999999999 8888888877766665543 257899999999999653322     1111 22346899999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        107 DELLVGILNQ  116 (238)
Q Consensus       107 ~elf~~i~~~  116 (238)
                      ++++..|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK04213 GTP-binding protein; Provisional

Probab=99.03  E-value=3.1e-10  Score=93.33  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=44.7

Q ss_pred             CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC---------eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKV---------KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~---------~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .++|+++|+||+|+...+   .+...++++.++.         +++++||++| |++++|.+|++.+.+.
T Consensus       129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            579999999999996543   3345555665554         5899999999 9999999999876543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.00  E-value=2.1e-09  Score=85.19  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-H
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-S   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-~   81 (238)
                      ...+.+||    +.|+.++..   .+|++++|+|. +...-+ ....+..+..    .+.|+++|+||+|+....... .
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~  123 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNANPERVK  123 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceecccccHHHHH
Confidence            56789999    566666554   89999999999 532211 1112223333    568999999999997432111 1


Q ss_pred             HHHHHHHH----h--CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         82 QDAKNLAA----S--FKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        82 ~~~~~~~~----~--~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .....+..    .  ..++++++||++|+|++++|+.|.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            11111111    1  236799999999999999999998654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.99  E-value=2.3e-09  Score=85.43  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC--eEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV--KFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~--~~~evSA~t~~  104 (238)
                      ++|++++|+|. +..++.  ..|+.++   .  .+.|+++++||+|+..   ...+....++++.++  |++++||++|+
T Consensus        64 ~ad~il~v~d~~~~~s~~--~~~~~~~---~--~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~  133 (158)
T PRK15467         64 DVDMLIYVHGANDPESRL--PAGLLDI---G--VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQ  133 (158)
T ss_pred             cCCEEEEEEeCCCccccc--CHHHHhc---c--CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence            89999999999 666653  3344432   1  4679999999999964   234566677777775  89999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy14042        105 NVDELLVGILNQIRL  119 (238)
Q Consensus       105 gv~elf~~i~~~l~~  119 (238)
                      |++++|..+.+.+..
T Consensus       134 gi~~l~~~l~~~~~~  148 (158)
T PRK15467        134 SVQQLVDYLASLTKQ  148 (158)
T ss_pred             CHHHHHHHHHHhchh
Confidence            999999999877643

>KOG0076|consensus

Probab=98.98  E-value=5.9e-10  Score=88.79  Aligned_cols=114  Identities=20%  Similarity=0.243  Sum_probs=90.8

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +.++  ...+.+||    +..|++|..   .++++|+++|. +++.|+....-.+.+.......++|+++.+||.|+.+.
T Consensus        64 i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~  141 (197)
T KOG0076|consen   64 IEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA  141 (197)
T ss_pred             eeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence            4444  46788999    788899877   99999999999 99999999988888877665689999999999999865


Q ss_pred             ccccHHH-HHHHHH---hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         77 RAVSSQD-AKNLAA---SFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        77 ~~v~~~~-~~~~~~---~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .++.+-. ....++   +..++|.++||.+|+||++-..++++.+..+
T Consensus       142 ~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  142 MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            4433221 111223   2357899999999999999999999888766

>cd01894 EngA1 EngA1 subfamily

Probab=98.98  E-value=5.7e-09  Score=81.45  Aligned_cols=79  Identities=19%  Similarity=0.162  Sum_probs=57.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      ++|++++|+|. +..+.... .+...+++    .+.|+++|+||+|+......     .......+. +++++||+++.|
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          76 EADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRG  145 (157)
T ss_pred             hCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCC
Confidence            89999999999 54444432 22233332    45999999999999764332     223344565 789999999999


Q ss_pred             HHHHHHHHHHH
Q psy14042        106 VDELLVGILNQ  116 (238)
Q Consensus       106 v~elf~~i~~~  116 (238)
                      ++++|+.+++.
T Consensus       146 v~~l~~~l~~~  156 (157)
T cd01894         146 IGDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.97  E-value=1.5e-09  Score=90.08  Aligned_cols=104  Identities=20%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cH
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SS   81 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~   81 (238)
                      .++.+||    ++|......   ++|++++|+|. +..........+..+...   ...|+++|+||+|+......  ..
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence            6789999    455333222   78999999999 532111111122222221   23579999999999753322  12


Q ss_pred             HHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         82 QDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        82 ~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ++++.+.+.   .+++++++||++|+|++++|..|.+.+.
T Consensus       160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            334444443   2678999999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK15494 era GTPase Era; Provisional

Probab=98.96  E-value=7e-09  Score=92.72  Aligned_cols=107  Identities=17%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             EEECCeEEEEEEEe-----CCCccccc---------C-CceEEEEEEECCcchHHHHH-HHHHHHHHhcCCCCCCEEEEE
Q psy14042          5 LQGHSGKVRAIIWN-----EQYEKLTS---------S-DETGLIIVWMLYKPSYHRVE-QDVIRLHEEGYLRTRPAIIVA   68 (238)
Q Consensus         5 i~~~~~~v~l~iWD-----e~~~~l~~---------~-~ad~~IlV~dvd~~s~~~~~-~~~~~l~~~~~~~~~piilVg   68 (238)
                      +..++  .++.+||     +.+..+..         . ++|++|+|+|. ..+|.... .|+..+..    .+.|.++|+
T Consensus        95 ~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~~~il~~l~~----~~~p~IlVi  167 (339)
T PRK15494         95 ITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDITHNILDKLRS----LNIVPIFLL  167 (339)
T ss_pred             EEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHHHHHHHHHHh----cCCCEEEEE
Confidence            34444  4679999     33443332         1 89999999986 23555553 45555554    356888999


Q ss_pred             EeccCCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         69 NKIDLARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        69 NK~DL~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ||+|+...   ...++.+.+...+  .+++++||++|.|++++|..|.+.+.+.+
T Consensus       168 NKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        168 NKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             EhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            99999643   2334555555443  57999999999999999999998776543

>TIGR00436 era GTP-binding protein Era

Probab=98.94  E-value=7.8e-09  Score=89.45  Aligned_cols=86  Identities=15%  Similarity=0.036  Sum_probs=63.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      ++|++++|+|. +..+++  ..++..+..    .+.|+++|+||+|+...... .+....++...+. +++++||++|.|
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g  151 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDN  151 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCC
Confidence            89999999999 665554  445555544    57899999999999743332 2334444444454 799999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14042        106 VDELLVGILNQIRLK  120 (238)
Q Consensus       106 v~elf~~i~~~l~~~  120 (238)
                      +++++..+.+.+++.
T Consensus       152 i~~L~~~l~~~l~~~  166 (270)
T TIGR00436       152 TSFLAAFIEVHLPEG  166 (270)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999877543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0072|consensus

Probab=98.94  E-value=2e-09  Score=83.33  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=83.2

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--   78 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--   78 (238)
                      -++.++++||    -..|.+|+.   +.+++|+|.|. |++........+-.+.++.......+++++||.|.+....  
T Consensus        59 yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~  138 (182)
T KOG0072|consen   59 YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRS  138 (182)
T ss_pred             cccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHH
Confidence            3678999999    445566655   99999999999 9888888877777776666557788999999999864322  


Q ss_pred             -ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         79 -VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        79 -v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                       +.......-.+..-+..|++||.+|+|+++..+++.+.+.+
T Consensus       139 E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  139 EVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence             11111222223334789999999999999999999987754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.92  E-value=6.9e-09  Score=83.55  Aligned_cols=102  Identities=21%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--c
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--S   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~   80 (238)
                      ...+.+||    ..|+..+..   .+|++++|+|. +..+... ..++..+..    .+.|+++|+||+|+......  .
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~  135 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEV  135 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHH
Confidence            46899999    445444433   89999999999 5444432 334444433    67999999999999753222  2


Q ss_pred             HHHHHHHHHh--------------CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         81 SQDAKNLAAS--------------FKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        81 ~~~~~~~~~~--------------~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .++..+..+.              ...+++++||++|+|++++|..+.+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         136 LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            2334444333              357899999999999999999998765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.91  E-value=2.4e-08  Score=91.60  Aligned_cols=88  Identities=18%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh----CCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS----FKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~~~~~~evSA~t  102 (238)
                      .+|++|+|+|. +..+.++.+ ++..+.+    .+.|+++|+||+|+........+....+...    .+++++++||++
T Consensus       254 ~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~  328 (429)
T TIGR03594       254 RADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT  328 (429)
T ss_pred             hCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence            89999999999 776666543 3344433    5789999999999972211111111122222    247899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy14042        103 HHNVDELLVGILNQIRLK  120 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~~  120 (238)
                      |.|++++|..+.+.....
T Consensus       329 g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       329 GQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.91  E-value=1.3e-08  Score=93.99  Aligned_cols=102  Identities=16%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             EEEECCeEEEEEEEe----CCCccc----------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKL----------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l----------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+.+++.  .+.+||    .++...          ... ++|++++|||. ++.+++..  |+..+..    .+.|+++|
T Consensus       245 ~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV  316 (442)
T TIGR00450       245 DFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILV  316 (442)
T ss_pred             EEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEE
Confidence            4566664  468999    222211          111 89999999999 88888765  7666643    56899999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +||+|+...      +...+++..+.+++++||++ .||+++|..+.+.+.+.
T Consensus       317 ~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       317 LNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            999999643      22345667788999999998 69999999999888654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.90  E-value=1.3e-08  Score=97.16  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             EEECCeEEEEEEEe----CCCcccc------c-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLT------S-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA   68 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~------~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg   68 (238)
                      ++.++  .++++||    +++....      .     .++|++++|+|. +.   +....+..++.+    .+.|+++|+
T Consensus        36 i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---er~l~l~~ql~~----~~~PiIIVl  106 (591)
T TIGR00437        36 LGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---ERNLYLTLQLLE----LGIPMILAL  106 (591)
T ss_pred             EEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---hhhHHHHHHHHh----cCCCEEEEE
Confidence            34444  3578999    5554431      1     178999999988 42   222333444433    579999999


Q ss_pred             EeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        69 NK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ||+|+.+++.+.. +.+.+++..+++++++||++|.|++++|+.+.+..
T Consensus       107 NK~Dl~~~~~i~~-d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       107 NLVDEAEKKGIRI-DEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             ehhHHHHhCCChh-hHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999976555543 56788888999999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.87  E-value=1.2e-08  Score=94.41  Aligned_cols=99  Identities=16%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             EEEECCeEEEEEEEe----CCCccc---------c-cC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKL---------T-SS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l---------~-~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+.+++  +.+.+||    +.+...         . .. ++|++++|+|. ++.+++....|..       ..+.|+++|
T Consensus       257 ~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV  327 (449)
T PRK05291        257 HINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVV  327 (449)
T ss_pred             EEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEE
Confidence            455665  4678999    333221         1 11 89999999999 7778776554433       267899999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      +||+|+.......        ...+.+++++||++|.|+++++..|.+.+..
T Consensus       328 ~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        328 LNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            9999997543321        3446789999999999999999999988754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.87  E-value=2e-08  Score=95.71  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             EEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042         13 RAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK   85 (238)
Q Consensus        13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~   85 (238)
                      .+.+||    +.|..++..   .+|++|+|+|.+..........+..+..    .++|+++++||+|+...   ..++..
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~----~~vPiIVviNKiDl~~~---~~e~v~  208 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA----ANVPIIVAINKIDKPEA---NPDRVK  208 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH----cCCCEEEEEECcccccC---CHHHHH
Confidence            788999    788777654   8899999999942222211112222222    57999999999999642   222333


Q ss_pred             HHHHh-------CC--CeEEEEccCCCCCHHHHHHHHHH
Q psy14042         86 NLAAS-------FK--VKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        86 ~~~~~-------~~--~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ..+..       ++  .+++++||++|.|++++|..+..
T Consensus       209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            32222       22  57999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.86  E-value=1.4e-08  Score=96.73  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccc
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAV   79 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v   79 (238)
                      +.+.+||    ++|......   ++|++++|+|. +   +++++.+    ..+..    .++| +++|+||+|+.+...+
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~----lgi~~iIVVlNK~Dlv~~~~~  121 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDL----LGIPHTIVVITKADRVNEEEI  121 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHH----cCCCeEEEEEECCCCCCHHHH
Confidence            7889999    667544333   99999999999 4   3444433    22322    4577 9999999999765433


Q ss_pred             --cHHHHHHHHHhC----CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         80 --SSQDAKNLAASF----KVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        80 --~~~~~~~~~~~~----~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                        ..+++..+.+..    +++++++||++|.|+++++..|.+.+...
T Consensus       122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence              234556665554    57899999999999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01889 SelB_euk SelB subfamily

Probab=98.86  E-value=1.3e-08  Score=83.34  Aligned_cols=105  Identities=19%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             CeEEEEEEEe-CCCcccccC------CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042          9 SGKVRAIIWN-EQYEKLTSS------DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--   78 (238)
Q Consensus         9 ~~~v~l~iWD-e~~~~l~~~------~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--   78 (238)
                      +..+.+.+|| ..+..+...      .+|++++|+|. +.........+.  +...   .+.|+++|+||+|+.....  
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~  139 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERE  139 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHH
Confidence            3468899999 333332222      68999999999 544444333332  1111   3579999999999964322  


Q ss_pred             ccHHHHHHH-HH------hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         79 VSSQDAKNL-AA------SFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        79 v~~~~~~~~-~~------~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...++..+. ..      ..+++++++||++|.|+++++..|..++.
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         140 RKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            122222221 11      23678999999999999999999997764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.86  E-value=1.5e-08  Score=96.89  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+.+++||    +.|...+..   .+|++|+|+|. +....+....|.... .    .+.|+++|+||+|+....  
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~--  142 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD--  142 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--
Confidence            56679999999    566554433   89999999999 655555555554322 1    568999999999996432  


Q ss_pred             cHHHHHHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ......++.+..+++   ++++||++|.|++++++.|++.++.
T Consensus       143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            122233444445553   8999999999999999999987753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.85  E-value=1.3e-08  Score=94.93  Aligned_cols=83  Identities=20%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++|+|+|. +..++.. ..|...++.    .+.|+++|+||+|+....   .+....+....+ ..+++||++|.|+
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence            89999999999 7666543 345555543    579999999999996421   111111222223 3578999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14042        107 DELLVGILNQIRL  119 (238)
Q Consensus       107 ~elf~~i~~~l~~  119 (238)
                      +++|..|++.+.+
T Consensus       188 ~eL~~~i~~~l~~  200 (472)
T PRK03003        188 GDLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHHhhccc
Confidence            9999999988855

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.82  E-value=1.6e-08  Score=78.74  Aligned_cols=76  Identities=21%  Similarity=0.193  Sum_probs=60.4

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++++|+|+ ++.+....+.+..       ....|+++|+||+|+......       .....+.+++++||+++.|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCH
Confidence            89999999999 7777776654433       267999999999999764433       33445678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14042        107 DELLVGILNQI  117 (238)
Q Consensus       107 ~elf~~i~~~l  117 (238)
                      ++++..|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01895 EngA2 EngA2 subfamily

Probab=98.80  E-value=6.3e-08  Score=76.46  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH-HHHHHHhC----CCeEEEEccC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD-AKNLAASF----KVKFIEVSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~-~~~~~~~~----~~~~~evSA~  101 (238)
                      ++|++++|+|. ++.+.... .+...+..    .+.|+++++||+|+...+....++ ...+.+..    ..+++++||+
T Consensus        84 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (174)
T cd01895          84 RADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISAL  158 (174)
T ss_pred             hcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEecc
Confidence            89999999999 76666543 23333332    568999999999997654222222 22233333    3689999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy14042        102 IHHNVDELLVGILN  115 (238)
Q Consensus       102 t~~gv~elf~~i~~  115 (238)
                      ++.|+++++..+.+
T Consensus       159 ~~~~i~~~~~~l~~  172 (174)
T cd01895         159 TGQGVDKLFDAIDE  172 (174)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=98.80  E-value=3.3e-08  Score=90.88  Aligned_cols=87  Identities=16%  Similarity=0.077  Sum_probs=63.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~g  105 (238)
                      ++|++|+|+|. ++.+++.+..|...+.... ..+.|+++|+||+|+......   ...  ....+.+ ++++||++|.|
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCC
Confidence            89999999999 8888888765555544432 257999999999999643110   111  1123555 58899999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14042        106 VDELLVGILNQIRLK  120 (238)
Q Consensus       106 v~elf~~i~~~l~~~  120 (238)
                      ++++++.|.+.+...
T Consensus       350 IdeL~e~I~~~l~~~  364 (426)
T PRK11058        350 IPLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999887543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.78  E-value=4.7e-08  Score=87.59  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-cHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-SSQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-~~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|+++ +..+|..+..|+..+..    .++|.+||+||+||....+. ...+.....+..+++++++||++++|
T Consensus       120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        120 NIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            69999999999 88899999999876543    67999999999999654321 11222333456789999999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        106 VDELLVGILN  115 (238)
Q Consensus       106 v~elf~~i~~  115 (238)
                      +++++..|..
T Consensus       196 ideL~~~L~~  205 (347)
T PRK12288        196 LEELEAALTG  205 (347)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

>cd00880 Era_like Era (E

Probab=98.77  E-value=5.7e-08  Score=74.89  Aligned_cols=101  Identities=19%  Similarity=0.177  Sum_probs=69.3

Q ss_pred             EEEEEEEe----CCCccccc--------C--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         11 KVRAIIWN----EQYEKLTS--------S--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~--------~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ...+.+||    ..+.....        .  ++|++++|+|. +..+..... +......    .+.|+++|+||+|+..
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~  118 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLP  118 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCC
Confidence            45789999    22222221        1  89999999999 665555544 4444433    6899999999999976


Q ss_pred             cccccHHH---HHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         76 ARAVSSQD---AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        76 ~~~v~~~~---~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ........   ........+.+++++||+++.|+++++..+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         119 EEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             hhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            54333221   122233346889999999999999999999864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.77  E-value=2.1e-08  Score=75.30  Aligned_cols=67  Identities=19%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHH---HHHHHHhcCCCCCCEEEEEEecc
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQD---VIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~---~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      .+.+......+.+||    +.+......   ++|++|+|||+ ++.||+.+..+   +..+....  .++|++|||||.|
T Consensus        42 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D  119 (119)
T PF08477_consen   42 VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD  119 (119)
T ss_dssp             EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred             EEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence            445666677799999    334443322   99999999999 99999998554   55555443  6699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.77  E-value=4.8e-08  Score=85.41  Aligned_cols=81  Identities=19%  Similarity=0.126  Sum_probs=64.7

Q ss_pred             CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|+|+ ++. ++..+..|+..+..    .++|+++|+||+||.....  ...........+.+++.+||+++.|
T Consensus        78 nvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~g  151 (287)
T cd01854          78 NVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGEG  151 (287)
T ss_pred             eCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCcc
Confidence            89999999999 666 88888889887765    5799999999999965421  1122333455789999999999999


Q ss_pred             HHHHHHHHH
Q psy14042        106 VDELLVGIL  114 (238)
Q Consensus       106 v~elf~~i~  114 (238)
                      +++++..|.
T Consensus       152 i~~L~~~L~  160 (287)
T cd01854         152 LDELREYLK  160 (287)
T ss_pred             HHHHHhhhc
Confidence            999988776

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.76  E-value=3.8e-08  Score=86.47  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|+|+ +++++.. +..|+..+..    .++|+++|+||+||...... ..+.....+..+++++++||+++.|
T Consensus        80 niD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            89999999999 7766544 4778777654    67999999999999633221 2233444566789999999999999


Q ss_pred             HHHHHHHHH
Q psy14042        106 VDELLVGIL  114 (238)
Q Consensus       106 v~elf~~i~  114 (238)
                      +++++..+.
T Consensus       155 i~~L~~~l~  163 (298)
T PRK00098        155 LDELKPLLA  163 (298)
T ss_pred             HHHHHhhcc
Confidence            999998774

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.76  E-value=5.7e-08  Score=88.36  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=73.1

Q ss_pred             CceEEEEEEECC----cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCC--CeEEEEcc
Q psy14042         28 DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFK--VKFIEVSV  100 (238)
Q Consensus        28 ~ad~~IlV~dvd----~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~--~~~~evSA  100 (238)
                      +++++++|+|+.    .++++.+..|+.++..+... .+.|++||+||+|+.....+ .+...++.+..+  .+++.+||
T Consensus       237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISA  315 (390)
T ss_pred             hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEEC
Confidence            899999999983    56888889999999887532 57899999999999754433 234445555544  47899999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy14042        101 GIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus       101 ~t~~gv~elf~~i~~~l~~~  120 (238)
                      +++.|+++++..|.+.+.+.
T Consensus       316 ~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhhC
Confidence            99999999999999988664

>PRK12289 GTPase RsgA; Reviewed

Probab=98.76  E-value=5.9e-08  Score=87.02  Aligned_cols=82  Identities=16%  Similarity=0.237  Sum_probs=62.6

Q ss_pred             CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|+|+ ++. ++..+..|+..+..    .++|++||+||+||....+.  +.........|++++.+||+++.|
T Consensus        89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~G  162 (352)
T PRK12289         89 NADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIG  162 (352)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCC
Confidence            99999999999 654 45566777776633    67999999999999643221  122233356789999999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        106 VDELLVGILN  115 (238)
Q Consensus       106 v~elf~~i~~  115 (238)
                      +++++..+..
T Consensus       163 I~eL~~~L~~  172 (352)
T PRK12289        163 LEALLEQLRN  172 (352)
T ss_pred             HHHHhhhhcc
Confidence            9999998864

>cd01855 YqeH YqeH

Probab=98.73  E-value=2.3e-08  Score=81.81  Aligned_cols=98  Identities=28%  Similarity=0.264  Sum_probs=63.3

Q ss_pred             EEEEEeCC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHH
Q psy14042         13 RAIIWNEQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNL   87 (238)
Q Consensus        13 ~l~iWDe~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~   87 (238)
                      ..++++.. |+.+...   ++|++++|+|+ +...     .|..++....  .+.|+++|+||+|+..... ..+....+
T Consensus        15 ~~~~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~--~~~~~ilV~NK~Dl~~~~~-~~~~~~~~   86 (190)
T cd01855          15 PVEIPDEDFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG--GNNPVILVGNKIDLLPKDK-NLVRIKNW   86 (190)
T ss_pred             cccCChHHHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc--CCCcEEEEEEchhcCCCCC-CHHHHHHH
Confidence            33444422 3554444   89999999999 5431     1223332222  5689999999999964332 22233333


Q ss_pred             H-----HhCCC---eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         88 A-----ASFKV---KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        88 ~-----~~~~~---~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .     +..+.   +++.+||++++|+++++..|.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2     23333   5899999999999999999998774

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.72  E-value=6e-08  Score=94.19  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=69.6

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR   77 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~   77 (238)
                      +..+.+.+||    +.|..++..   .+|++|+|+|. +   +.+++.+.    .+..    .++|+|+|+||+|+....
T Consensus       292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k~----~~iPiIVViNKiDl~~~~  363 (742)
T CHL00189        292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQA----ANVPIIVAINKIDKANAN  363 (742)
T ss_pred             CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHHh----cCceEEEEEECCCccccC
Confidence            4458899999    678777654   89999999999 5   34444332    2222    578999999999997532


Q ss_pred             cccHHHHHH-H------HHhCC--CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         78 AVSSQDAKN-L------AASFK--VKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        78 ~v~~~~~~~-~------~~~~~--~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                         .++... +      ...++  ++++++||++|.|++++|..|....
T Consensus       364 ---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        364 ---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence               111111 1      22333  6899999999999999999988653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.72  E-value=3.1e-07  Score=87.72  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=77.7

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++...+++.|||    +.|......   .+|++++|+|.........+.|+..+..    .++|+++|+||+|+...+..
T Consensus        59 v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~  134 (594)
T TIGR01394        59 IRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPD  134 (594)
T ss_pred             EEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHH
Confidence            333458899999    566543332   8999999999954566666777777765    56899999999999754321


Q ss_pred             -cHHHHHHHH-------HhCCCeEEEEccCCCC----------CHHHHHHHHHHHHHh
Q psy14042         80 -SSQDAKNLA-------ASFKVKFIEVSVGIHH----------NVDELLVGILNQIRL  119 (238)
Q Consensus        80 -~~~~~~~~~-------~~~~~~~~evSA~t~~----------gv~elf~~i~~~l~~  119 (238)
                       ..++...+.       ++..++++.+||++|+          |++.+|+.|++.++.
T Consensus       135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence             122333333       2245789999999996          799999999977643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.72  E-value=1.2e-07  Score=92.82  Aligned_cols=97  Identities=21%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--c
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--A   78 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~   78 (238)
                      ..+.|||    +.|..++..   .+|++|||+|. +   +++++.+    ..+.    ..++|+|+++||+|+....  .
T Consensus       337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~----~~~vPiIVviNKiDl~~a~~e~  408 (787)
T PRK05306        337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK----AAGVPIIVAINKIDKPGANPDR  408 (787)
T ss_pred             EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH----hcCCcEEEEEECccccccCHHH
Confidence            5688999    788877765   78999999999 5   3333332    1222    2679999999999996421  1


Q ss_pred             ccHH--HHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         79 VSSQ--DAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        79 v~~~--~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +..+  +...+++.++  ++++++||++|.|++++|..|...
T Consensus       409 V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        409 VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            1111  0111233343  789999999999999999998753

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.70  E-value=1.7e-07  Score=86.24  Aligned_cols=102  Identities=18%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             ECCeEEEEEEEe----CCCccccc-C--CceEEEEEEEC-CcchHHHHHHHHH--HHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTS-S--DETGLIIVWML-YKPSYHRVEQDVI--RLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~-~--~ad~~IlV~dv-d~~s~~~~~~~~~--~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      ++...+.+.|||    ++|..... .  ++|++|+|+|. +.+++ ....+..  .+.+..  ...|+++|+||+|+...
T Consensus        80 ~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        80 FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQTREHAFLARTL--GINQLIVAINKMDSVNY  156 (426)
T ss_pred             EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCchHHHHHHHHHc--CCCeEEEEEEChhccCc
Confidence            334457899999    55543222 2  89999999999 55433 2222222  122222  34579999999999642


Q ss_pred             cc----ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042         77 RA----VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        77 ~~----v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~  111 (238)
                      ..    ....++..+++..+     ++++++||++|.|+++++.
T Consensus       157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            11    12345666676655     5799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04163 Era Era subfamily

Probab=98.69  E-value=8.4e-08  Score=74.94  Aligned_cols=84  Identities=25%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC-CCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~g  105 (238)
                      ++|++++|+|. +..+ +....+...+..    .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            89999999999 5411 112233344433    36899999999999754433344455555555 36899999999999


Q ss_pred             HHHHHHHHHHH
Q psy14042        106 VDELLVGILNQ  116 (238)
Q Consensus       106 v~elf~~i~~~  116 (238)
                      +++++..|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999999754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01859 MJ1464 MJ1464

Probab=98.68  E-value=4.6e-08  Score=77.41  Aligned_cols=84  Identities=15%  Similarity=0.042  Sum_probs=57.9

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++|+|+|. ++..... ..+...+.    ..+.|+++|+||+|+......  .....+.+..+.+++.+||+++.|+
T Consensus        12 ~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi   84 (156)
T cd01859          12 ESDVVLEVLDARDPELTRS-RKLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGT   84 (156)
T ss_pred             hCCEEEEEeeCCCCcccCC-HHHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccH
Confidence            69999999999 5433222 12222222    156899999999999643221  1111333446778999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      ++++..+.+.+.
T Consensus        85 ~~L~~~l~~~~~   96 (156)
T cd01859          85 KILRRTIKELAK   96 (156)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.68  E-value=7.9e-08  Score=78.53  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--cc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--AV   79 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~v   79 (238)
                      .....+.+.|    ..|......   .+|++|+|.|.....-......+..+..    .+.|+++|.||+|+...+  .+
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~  142 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEI  142 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccc----cccceEEeeeeccchhhhHHHH
Confidence            3447789999    334332222   8999999999943333334445555554    678999999999997221  11


Q ss_pred             cHHHHHHHHHhC------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         80 SSQDAKNLAASF------KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        80 ~~~~~~~~~~~~------~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+....+.+..      .++++.+||++|+|++++++.|.+.++
T Consensus       143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            111222443333      357999999999999999999997764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.64  E-value=9e-07  Score=84.42  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             EEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--
Q psy14042         13 RAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--   79 (238)
Q Consensus        13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--   79 (238)
                      .+.+||    +.|+.++..   .+|++++|+|. +   +.+++.+..    +..    .+.|+++++||+|+......  
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhcc
Confidence            388999    788877665   89999999999 5   455554432    222    47899999999999632100  


Q ss_pred             ----------cHH------------HHHHHHH------------hC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         80 ----------SSQ------------DAKNLAA------------SF--KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        80 ----------~~~------------~~~~~~~------------~~--~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                                ..+            ....+++            .+  .++++++||++|+|+++++..|.....
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                      000            0011121            12  368999999999999999998875543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.59  E-value=9e-08  Score=86.27  Aligned_cols=91  Identities=24%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             eCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH----HHHHH
Q psy14042         18 NEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA----KNLAA   89 (238)
Q Consensus        18 De~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~----~~~~~   89 (238)
                      |++|+.+...   +++++++|+|+ |..     ..|..++.++.  .+.|+++|+||+||.... +..+..    +++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHH
Confidence            4677776655   88899999998 533     33566666554  478999999999996432 223333    34466


Q ss_pred             hCCC---eEEEEccCCCCCHHHHHHHHHHH
Q psy14042         90 SFKV---KFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        90 ~~~~---~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +.++   .++++||++++|++++|..+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6776   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.57  E-value=3.5e-07  Score=89.30  Aligned_cols=86  Identities=13%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHH-Hh----CCCeEEEEccC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLA-AS----FKVKFIEVSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-~~----~~~~~~evSA~  101 (238)
                      ++|++++|+|. +..++++.. +...+..    .+.|++||+||+||.....  .+..+... ..    ...+.+.+||+
T Consensus       532 ~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAk  604 (712)
T PRK09518        532 RSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAK  604 (712)
T ss_pred             cCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECC
Confidence            79999999999 777887765 3344433    5799999999999965322  11121111 11    13467999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy14042        102 IHHNVDELLVGILNQIRLK  120 (238)
Q Consensus       102 t~~gv~elf~~i~~~l~~~  120 (238)
                      +|.|++++|..+.+.+...
T Consensus       605 tg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        605 TGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.57  E-value=2.1e-07  Score=85.25  Aligned_cols=104  Identities=23%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--   79 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--   79 (238)
                      ..++.+||    ++|......   .+|++++|+|. +.. .-+.... +..+.. .  ...|+++|+||+|+......  
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~  159 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I--GIKNIVIVQNKIDLVSKERALE  159 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c--CCCcEEEEEEeeccccchhHHH
Confidence            36889999    555432222   67999999999 432 1222222 222222 1  23479999999999754332  


Q ss_pred             cHHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         80 SSQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+++..+++..   +.+++++||++|.|++++++.|...+.
T Consensus       160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            123444444432   578999999999999999999987653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.56  E-value=3.7e-07  Score=84.05  Aligned_cols=101  Identities=18%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             EEEECCeEEEEEEEe----CCC--------cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQY--------EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~--------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+.+++  +.+.+||    +..        +.....   ++|++|+|+|. +..+..+. .....+++    .+.|+++|
T Consensus        43 ~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~----~~~piilv  115 (435)
T PRK00093         43 EAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADE-EIAKILRK----SNKPVILV  115 (435)
T ss_pred             EEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCcEEEE
Confidence            345555  7789999    331        111111   89999999999 54333221 11222322    37899999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHH
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +||+|+....    +....+ ...++. ++++||++|.|++++|+.++..
T Consensus       116 ~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        116 VNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             EECccCccch----hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence            9999975421    122222 345664 8999999999999999999873

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.56  E-value=1.4e-06  Score=80.19  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=63.5

Q ss_pred             CeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-
Q psy14042          9 SGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-   78 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-   78 (238)
                      ...+++.+||    ++|.. +...  ++|++|+|+|. ++..+.. ...++..+.. .  ...|+++|+||+|+..... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~--~~~~iivviNK~Dl~~~~~~  157 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L--GINQLIVAINKMDAVNYDEK  157 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c--CCCeEEEEEEccccccccHH
Confidence            3457899999    55643 3332  89999999999 5322221 2222222222 1  2346999999999975211 


Q ss_pred             ---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042         79 ---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        79 ---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~  111 (238)
                         ...+++..+.+..+     ++++++||++|.|+++++.
T Consensus       158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence               12345556665555     5799999999999998553

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.55  E-value=4.6e-07  Score=73.80  Aligned_cols=86  Identities=17%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      ..+++++|+|. ++.+.... .+...+..    .+.|+++++||+|+....+.  ..+++.........+++++||+++.
T Consensus       106 ~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~  180 (196)
T PRK00454        106 NLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ  180 (196)
T ss_pred             cceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence            44678888887 54333321 12222222    56899999999999754332  2233444444446789999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy14042        105 NVDELLVGILNQIR  118 (238)
Q Consensus       105 gv~elf~~i~~~l~  118 (238)
                      |+++++..|.+.+.
T Consensus       181 gi~~l~~~i~~~~~  194 (196)
T PRK00454        181 GIDELRAAIAKWLA  194 (196)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999987653

>PRK00089 era GTPase Era; Reviewed

Probab=98.53  E-value=4.7e-07  Score=79.05  Aligned_cols=88  Identities=24%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCC
Q psy14042         28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~g  105 (238)
                      ++|++++|+|.+. .+... ......+..    .+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus        84 ~~D~il~vvd~~~-~~~~~~~~i~~~l~~----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         84 DVDLVLFVVDADE-KIGPGDEFILEKLKK----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             cCCEEEEEEeCCC-CCChhHHHHHHHHhh----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            8999999999932 22222 233333332    468999999999997443333445555555554 5799999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14042        106 VDELLVGILNQIRLK  120 (238)
Q Consensus       106 v~elf~~i~~~l~~~  120 (238)
                      +++++..+.+.+...
T Consensus       159 v~~L~~~L~~~l~~~  173 (292)
T PRK00089        159 VDELLDVIAKYLPEG  173 (292)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999887543

>KOG0074|consensus

Probab=98.53  E-value=1.9e-07  Score=72.28  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      |+++.++ .++|.+||    ...|..|+.   +.|++|+|.|. |+..|+.+..-+.++.........|+++.+||.|+.
T Consensus        54 k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll  132 (185)
T KOG0074|consen   54 KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL  132 (185)
T ss_pred             EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence            4555555 68999999    445777766   99999999999 999999998888888776656899999999999986


Q ss_pred             CcccccHHHH-HHH--HHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         75 RARAVSSQDA-KNL--AASFKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        75 ~~~~v~~~~~-~~~--~~~~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ....+..... ..+  .....+...+|||.+++|+.+...++.
T Consensus       133 taa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~  175 (185)
T KOG0074|consen  133 TAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ  175 (185)
T ss_pred             hhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence            5432222110 011  122235678999999999998888887

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.52  E-value=2.6e-07  Score=84.53  Aligned_cols=105  Identities=22%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--c
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--S   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~   80 (238)
                      ...+.+||    ++|...+..   .+|++|+|+|. +..........+..+...   .-.|+++|+||+|+......  .
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHH
Confidence            46789999    666544333   78999999999 432112222222223221   33579999999999754322  1


Q ss_pred             HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         81 SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        81 ~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .+++..+.+..   +++++++||++|+|++++++.|...+.
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            23444444432   678999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.51  E-value=5.5e-07  Score=82.64  Aligned_cols=82  Identities=26%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      ++|++++|+|. +..+..+ ..+...+++    .+.|+++|+||+|+......    ... +...++ +++++||++|.|
T Consensus        78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        78 EADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence            89999999999 5433332 223333433    46899999999998754432    111 345666 699999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14042        106 VDELLVGILNQIRL  119 (238)
Q Consensus       106 v~elf~~i~~~l~~  119 (238)
                      +++++..+.+.+..
T Consensus       148 v~~ll~~i~~~l~~  161 (429)
T TIGR03594       148 IGDLLDAILELLPE  161 (429)
T ss_pred             hHHHHHHHHHhcCc
Confidence            99999999987754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.50  E-value=1.3e-06  Score=85.69  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=75.8

Q ss_pred             ECCeEEEEEEEe----CCCccccc---------------CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTS---------------SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~---------------~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      +.....++.+||    ..+.....               .++|++++|+|. +.+   ....|..++.+    .+.|+++
T Consensus        45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---r~l~l~~ql~e----~giPvIv  117 (772)
T PRK09554         45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---RNLYLTLQLLE----LGIPCIV  117 (772)
T ss_pred             EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---hhHHHHHHHHH----cCCCEEE
Confidence            334456789999    33332111               178999999988 432   22345555554    5799999


Q ss_pred             EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      |.||+|+.+++.+. .+.+++.+.+|++++++||++++|++++++.+.+..
T Consensus       118 VlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        118 ALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            99999997665553 456788888999999999999999999999888654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.50  E-value=4.4e-07  Score=87.06  Aligned_cols=101  Identities=11%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             EEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc--HH
Q psy14042         13 RAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS--SQ   82 (238)
Q Consensus        13 ~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~--~~   82 (238)
                      .+.+||    ++|.. +...  ++|++++|+|.+..........+..+..    .++| +++|+||+|+.++..+.  .+
T Consensus        52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~  127 (614)
T PRK10512         52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRR  127 (614)
T ss_pred             EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHH
Confidence            478999    66733 3333  9999999999943322222222332322    3455 57999999997543222  23


Q ss_pred             HHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         83 DAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        83 ~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ++..+.+..+   .+++++||++|+|++++++.|.+..
T Consensus       128 ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        128 QVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            4555555444   6899999999999999999998654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.49  E-value=4.9e-07  Score=83.23  Aligned_cols=87  Identities=20%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH----hCCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA----SFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~evSA~t  102 (238)
                      .+|++|+|+|. +..+.++.. +...+.+    .+.|+++|+||+|+...... .+....+..    ...++++++||++
T Consensus       255 ~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~  328 (435)
T PRK00093        255 RADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALT  328 (435)
T ss_pred             HCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCC
Confidence            89999999999 766666543 3333333    56899999999999743221 111112222    2357899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy14042        103 HHNVDELLVGILNQIRLK  120 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~~  120 (238)
                      |.|++++|..+.+.....
T Consensus       329 ~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        329 GQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999998766443

>PRK10218 GTP-binding protein; Provisional

Probab=98.47  E-value=8.7e-07  Score=84.76  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR   77 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~   77 (238)
                      +.+....+++.+||    +.|...+..   .+|++|+|+|.........+.++..+..    .+.|.+++.||+|+...+
T Consensus        61 ~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~  136 (607)
T PRK10218         61 TAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA----YGLKPIVVINKVDRPGAR  136 (607)
T ss_pred             EEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence            34445568999999    667665544   9999999999933333334444444443    578999999999997432


Q ss_pred             cc-cHHHHHHHHH-------hCCCeEEEEccCCCC----------CHHHHHHHHHHHHH
Q psy14042         78 AV-SSQDAKNLAA-------SFKVKFIEVSVGIHH----------NVDELLVGILNQIR  118 (238)
Q Consensus        78 ~v-~~~~~~~~~~-------~~~~~~~evSA~t~~----------gv~elf~~i~~~l~  118 (238)
                      .. ..+++..+..       ...+|++.+||++|+          |+..+++.|+..++
T Consensus       137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            21 1123333321       235789999999998          58888888887664

>KOG1489|consensus

Probab=98.45  E-value=1e-06  Score=76.77  Aligned_cols=85  Identities=31%  Similarity=0.349  Sum_probs=69.6

Q ss_pred             CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccC
Q psy14042         28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~  101 (238)
                      .++..++|.|+ ..   .+|+.++.+..|+..|... .++|.++|+||+|+++.+   ...+.++++...-+ ++++||+
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~  350 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAK  350 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeec
Confidence            78999999999 55   8999999999999888754 899999999999996321   22246677776654 9999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy14042        102 IHHNVDELLVGILN  115 (238)
Q Consensus       102 t~~gv~elf~~i~~  115 (238)
                      +++|+++++..+-+
T Consensus       351 ~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  351 SGEGLEELLNGLRE  364 (366)
T ss_pred             cccchHHHHHHHhh
Confidence            99999999887753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.45  E-value=1.1e-06  Score=85.78  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      .+|++|+|+|.... +... ..|...++.    .+.|+++|+||+|+.....    ....+. ..+. ..+++||++|.|
T Consensus       354 ~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        354 LADAVVFVVDGQVG-LTSTDERIVRMLRR----AGKPVVLAVNKIDDQASEY----DAAEFW-KLGLGEPYPISAMHGRG  423 (712)
T ss_pred             hCCEEEEEEECCCC-CCHHHHHHHHHHHh----cCCCEEEEEECcccccchh----hHHHHH-HcCCCCeEEEECCCCCC
Confidence            89999999999321 2222 345555554    6799999999999864321    112221 2232 357899999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14042        106 VDELLVGILNQIRL  119 (238)
Q Consensus       106 v~elf~~i~~~l~~  119 (238)
                      ++++|..|++.+..
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999988754

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.43  E-value=5.9e-07  Score=71.58  Aligned_cols=79  Identities=28%  Similarity=0.313  Sum_probs=60.4

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD  107 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~  107 (238)
                      +.|++|+|.|..  .++.-.....++.+    .+.|+++|.||+|+..++.+.. +...+++.+|+|++.+||++++|++
T Consensus        78 ~~D~ii~VvDa~--~l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   78 KPDLIIVVVDAT--NLERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSSEEEEEEEGG--GHHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCCEEEEECCCC--CHHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            789999998872  24443445566655    6799999999999876555433 4677788899999999999999999


Q ss_pred             HHHHHH
Q psy14042        108 ELLVGI  113 (238)
Q Consensus       108 elf~~i  113 (238)
                      +++..|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04167 Snu114p Snu114p subfamily

Probab=98.41  E-value=8.2e-07  Score=74.03  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-   78 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-   78 (238)
                      ++..+.+.+||    ++|......   .+|++|+|+|. +..++.. ..++..+..    .+.|+++|+||+|+...+. 
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~  141 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELK  141 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCccccc
Confidence            35679999999    556544433   99999999999 5555543 344444433    4589999999999752110 


Q ss_pred             cc-----------HHHHHHHHHhCCC-------e----EEEEccCCCCCHH
Q psy14042         79 VS-----------SQDAKNLAASFKV-------K----FIEVSVGIHHNVD  107 (238)
Q Consensus        79 v~-----------~~~~~~~~~~~~~-------~----~~evSA~t~~gv~  107 (238)
                      ..           .+++...++..+.       |    +++.||+++|++.
T Consensus       142 l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         142 LPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            00           1123333443322       2    6789999999876

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.37  E-value=2.2e-06  Score=75.47  Aligned_cols=95  Identities=21%  Similarity=0.192  Sum_probs=74.8

Q ss_pred             CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEE-EccC
Q psy14042         28 DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIE-VSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~e-vSA~  101 (238)
                      .+.+++.|.|+ .   +++.+++..+..+|.+|... .+.|.+||+||+|+...++........+.+..+...+. +||.
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~  316 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL  316 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence            67778888888 2   45799999999999999755 89999999999997765554444555566666654222 9999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhc
Q psy14042        102 IHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus       102 t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +++|++++...+.+.+.+.+.
T Consensus       317 t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         317 TREGLDELLRALAELLEETKA  337 (369)
T ss_pred             cccCHHHHHHHHHHHHHHhhh
Confidence            999999999999998887763

>cd01858 NGP_1 NGP-1

Probab=98.37  E-value=1.8e-06  Score=68.44  Aligned_cols=87  Identities=17%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|.+++|.|. ++..- ....+...+...  ..+.|+++|.||+||..+... ......+.+.+....+.+||+.+.|+
T Consensus         8 ~aD~il~VvD~~~p~~~-~~~~i~~~l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~~~   83 (157)
T cd01858           8 SSDVVIQVLDARDPMGT-RCKHVEEYLKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPFGK   83 (157)
T ss_pred             hCCEEEEEEECCCCccc-cCHHHHHHHHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccccH
Confidence            89999999999 54211 122333333322  246899999999999643321 22233333333334578999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      ++++..+...+.
T Consensus        84 ~~L~~~l~~~~~   95 (157)
T cd01858          84 GSLIQLLRQFSK   95 (157)
T ss_pred             HHHHHHHHHHHh
Confidence            999999876543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.37  E-value=3.9e-06  Score=71.20  Aligned_cols=50  Identities=30%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .+|+++|+||+|+..     .+++..+++.  .+++++||+++.|++++|+.+.+.+
T Consensus       176 y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         176 YIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            469999999999854     3344445443  4689999999999999999999765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.31  E-value=4.2e-06  Score=66.27  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             eEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHH
Q psy14042         30 TGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDE  108 (238)
Q Consensus        30 d~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~e  108 (238)
                      |.+++|.|. ++.+...  .++...  .....+.|+++|.||+||....++ .+....+.+..+.+++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~--~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERV--LIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHH--HHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            678999999 6544432  233311  111267999999999999643221 1122233334466789999999999999


Q ss_pred             HHHHHHHHHHh
Q psy14042        109 LLVGILNQIRL  119 (238)
Q Consensus       109 lf~~i~~~l~~  119 (238)
                      +++.+.+...+
T Consensus        76 L~~~i~~~~~~   86 (155)
T cd01849          76 KESAFTKQTNS   86 (155)
T ss_pred             HHHHHHHHhHH
Confidence            99999876543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.29  E-value=3.8e-06  Score=84.39  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=65.0

Q ss_pred             EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042         14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--   80 (238)
Q Consensus        14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--   80 (238)
                      +.+||    +.|..+...   .+|++++|+|. +   +.+++.+.    .+..    .++|+++|+||+|+.......  
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~  599 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED  599 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence            79999    777666544   79999999999 4   45555443    2332    468999999999995321110  


Q ss_pred             --------------HHHHH--------HHHH------------hC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         81 --------------SQDAK--------NLAA------------SF--KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        81 --------------~~~~~--------~~~~------------~~--~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                                    ..+..        ++++            ++  .++++++||+||+|+++|+..|.....
T Consensus       600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                          01110        0111            11  357999999999999999988765443

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.29  E-value=3.1e-06  Score=71.33  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=43.5

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +..+.+++||    +.|......   .+|++|+|+|+ ...+.+. +..+..+..    .+.|+++|+||+|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            4578999999    666554443   99999999999 5444443 333333332    468999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1707|consensus

Probab=98.27  E-value=8.7e-07  Score=82.46  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             eEEEEEEEeC-----CCcccccC--CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCC-CCCCEEEEEEeccCCCcccc
Q psy14042         10 GKVRAIIWNE-----QYEKLTSS--DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYL-RTRPAIIVANKIDLARARAV   79 (238)
Q Consensus        10 ~~v~l~iWDe-----~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v   79 (238)
                      ..|-..|.|.     .--.+...  .||++.++|++ ++.+++.+. .|++.+++-.+. .++|+||||||+|+......
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            3455677771     11223333  89999999999 889999994 699999886644 68999999999999754443


Q ss_pred             cHHH-HHHHHHhCC-C-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         80 SSQD-AKNLAASFK-V-KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        80 ~~~~-~~~~~~~~~-~-~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +.+. ...+..++. + ..++|||++..++.++|+-.-+.+..-
T Consensus       134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence            3332 444555543 3 378899999999999999877665543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.27  E-value=2.7e-06  Score=70.76  Aligned_cols=95  Identities=22%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             EEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc----cc
Q psy14042         12 VRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA----VS   80 (238)
Q Consensus        12 v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~----v~   80 (238)
                      .++.+||    ++|.. +...  .+|++|+|+|...............+.. .  ...++|+|.||+|+.....    ..
T Consensus        77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i  153 (208)
T cd04166          77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEI  153 (208)
T ss_pred             ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHH
Confidence            4678999    55533 2222  8999999999933222222222222222 1  2245788999999964321    11


Q ss_pred             HHHHHHHHHhCC---CeEEEEccCCCCCHHHH
Q psy14042         81 SQDAKNLAASFK---VKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        81 ~~~~~~~~~~~~---~~~~evSA~t~~gv~el  109 (238)
                      ..+...+.+.++   .+++.+||++|.|+++.
T Consensus       154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            234555566666   35899999999998854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.25  E-value=4.6e-06  Score=79.67  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc---
Q psy14042         14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV---   79 (238)
Q Consensus        14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v---   79 (238)
                      +.+||    +.|..++..   .+|++|+|+|. +   +.+++.+..    +..    .++|+++++||+|+......   
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~  144 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTED  144 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcC
Confidence            68999    788877665   79999999999 5   566665532    222    57899999999998521100   


Q ss_pred             -c------------HH-------HH-HHHHH------------h--CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         80 -S------------SQ-------DA-KNLAA------------S--FKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        80 -~------------~~-------~~-~~~~~------------~--~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                       .            .+       +. ..+++            +  ..++++++||++|+|+++++..+...+
T Consensus       145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence             0            00       00 11111            1  136799999999999999998887544

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=6.2e-05  Score=69.83  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=97.6

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      -.+.+.|    |-|..|+..   =+|.+|||.++ |   +++.+.+.    .++.    .+.|++++.||+|.++.   .
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----hak~----a~vP~iVAiNKiDk~~~---n  123 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HAKA----AGVPIVVAINKIDKPEA---N  123 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HHHH----CCCCEEEEEecccCCCC---C
Confidence            4577888    788888776   57999999999 4   45555443    2332    78999999999999732   2


Q ss_pred             HHHHHHHH-------HhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeec
Q psy14042         81 SQDAKNLA-------ASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS  151 (238)
Q Consensus        81 ~~~~~~~~-------~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (238)
                      +.....-.       +.++  ..++++||++|+|+++|+..+.-...-.  +.+..++.           ...+..+...
T Consensus       124 p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~--elka~~~~-----------~a~gtviE~~  190 (509)
T COG0532         124 PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL--ELKANPEG-----------PARGTVIEVK  190 (509)
T ss_pred             HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH--hhhcCCCC-----------cceEEEEEEE
Confidence            22222222       2333  4699999999999999999888555433  21111111           2223333222


Q ss_pred             -ccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEE-EEeCCCCeeeeee
Q psy14042        152 -VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH-LYDYEGNFMNKVS  202 (238)
Q Consensus       152 -~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~d~~g~~~~~~~  202 (238)
                       ..|.   |.-..  .+.+----.-+-.+..|+..|-|. .+|..|..+..-.
T Consensus       191 ~dkG~---G~vat--viv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~  238 (509)
T COG0532         191 LDKGL---GPVAT--VIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAG  238 (509)
T ss_pred             eccCC---CceEE--EEEecCeEecCCEEEEccCCCceEEeehhcCCCccccC
Confidence             2222   22111  222211234566778888888775 5677787765433

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.22  E-value=2.5e-06  Score=71.55  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc---hH----HHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP---SY----HRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~---s~----~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ...++.+||    .+|......   .+|++|+|.|. +..   .|    +..+.+ ..+.. .  ...|+++|+||+|+.
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~iiivvNK~Dl~  150 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L--GVKQLIVAVNKMDDV  150 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c--CCCeEEEEEEccccc
Confidence            347889999    233322211   79999999999 531   11    112222 11211 1  346899999999997


Q ss_pred             Cc---ccc---cHHHHHHHHHhCC-----CeEEEEccCCCCCHH
Q psy14042         75 RA---RAV---SSQDAKNLAASFK-----VKFIEVSVGIHHNVD  107 (238)
Q Consensus        75 ~~---~~v---~~~~~~~~~~~~~-----~~~~evSA~t~~gv~  107 (238)
                      ..   +..   ..+++..+.+..+     ++++++||++|.|++
T Consensus       151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            32   111   1123333344443     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.19  E-value=9.2e-06  Score=74.09  Aligned_cols=94  Identities=14%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             ECCeEEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCccc
Q psy14042          7 GHSGKVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARA   78 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~   78 (238)
                      ++....++.+||    ++|.... ..  ++|++++|+|.+..........+..+..    .++|.+ +|.||+|+....+
T Consensus        70 ~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~  145 (394)
T TIGR00485        70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEE  145 (394)
T ss_pred             EcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEEecccCCHHH
Confidence            334456788999    5664322 22  7899999999943222223333334433    457755 6899999975433


Q ss_pred             cc---HHHHHHHHHhCC-----CeEEEEccCCCC
Q psy14042         79 VS---SQDAKNLAASFK-----VKFIEVSVGIHH  104 (238)
Q Consensus        79 v~---~~~~~~~~~~~~-----~~~~evSA~t~~  104 (238)
                      ..   .++++.+++..+     ++++++||++|.
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            22   235666666654     789999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.18  E-value=8.2e-06  Score=74.44  Aligned_cols=105  Identities=16%  Similarity=0.226  Sum_probs=66.6

Q ss_pred             eEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc-
Q psy14042         10 GKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS-   80 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~-   80 (238)
                      ....+.++|    ++|.. +...  .+|++++|.|.+..........+..+..    .++| +|++.||+|+....+.. 
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~  148 (394)
T PRK12736         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLE  148 (394)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHH
Confidence            345678999    45533 2222  8899999999943322333334444433    4678 67899999997443322 


Q ss_pred             --HHHHHHHHHhCC-----CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q psy14042         81 --SQDAKNLAASFK-----VKFIEVSVGIHH--------NVDELLVGILNQIR  118 (238)
Q Consensus        81 --~~~~~~~~~~~~-----~~~~evSA~t~~--------gv~elf~~i~~~l~  118 (238)
                        .+++..+.+..+     ++++.+||++|.        +++++++.+.+.+.
T Consensus       149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence              235555555554     579999999983        56777777765543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.17  E-value=6.9e-06  Score=66.37  Aligned_cols=75  Identities=16%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCC--CeEEEEccCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFK--VKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~--~~~~evSA~t  102 (238)
                      .++++++|+|. ++-+..+. .++..+..    .+.|+++|+||+|+.....  ...++++...+..+  .+++++||++
T Consensus       100 ~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~  174 (179)
T TIGR03598       100 NLKGVVLLMDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLK  174 (179)
T ss_pred             hhcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCC
Confidence            56899999999 54444443 23333332    5789999999999964322  22344555555544  4799999999


Q ss_pred             CCCHH
Q psy14042        103 HHNVD  107 (238)
Q Consensus       103 ~~gv~  107 (238)
                      |+|++
T Consensus       175 g~gi~  179 (179)
T TIGR03598       175 KTGID  179 (179)
T ss_pred             CCCCC
Confidence            99974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.15  E-value=1.5e-05  Score=67.74  Aligned_cols=63  Identities=19%  Similarity=0.078  Sum_probs=44.2

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +....+++.+||    .+|...+..   .+|++++|+|. +.... ....+...+.+    .+.|+++++||+|+.
T Consensus        59 ~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          59 FQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             EEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence            334457899999    455544333   89999999999 54332 34455555544    578999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.14  E-value=3.2e-06  Score=65.90  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=48.2

Q ss_pred             CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      ++|++++|+|. ++.+..  .+..|+..   ..  .+.|+++|+||+||..+..+  ....+..+..+.+++.+||+++.
T Consensus        11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~~--~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~~~~   83 (141)
T cd01857          11 RSDIVVQIVDARNPLLFRPPDLERYVKE---VD--PRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSALKEN   83 (141)
T ss_pred             hCCEEEEEEEccCCcccCCHHHHHHHHh---cc--CCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEecCCC
Confidence            89999999999 654433  23333332   21  47899999999999643322  23334455567889999999887


Q ss_pred             C
Q psy14042        105 N  105 (238)
Q Consensus       105 g  105 (238)
                      +
T Consensus        84 ~   84 (141)
T cd01857          84 A   84 (141)
T ss_pred             c
Confidence            5

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0462|consensus

Probab=98.13  E-value=1.8e-05  Score=73.51  Aligned_cols=108  Identities=19%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-
Q psy14042          8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-   79 (238)
                      +|+.+.|++-|    -.|+. +..+  -++|+|+|.|..+..-.....  +--+.+.  .+..+|.|.||+|++..+.- 
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a--nf~lAfe--~~L~iIpVlNKIDlp~adpe~  196 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVA--NFYLAFE--AGLAIIPVLNKIDLPSADPER  196 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHH--HHHHHHH--cCCeEEEeeeccCCCCCCHHH
Confidence            47789999999    44443 2222  789999999994433221111  1111122  67889999999999864321 


Q ss_pred             cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      -..+...+......+.+.+||++|.|+++++.+|++.++.
T Consensus       197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            1223344444445579999999999999999999987753

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.13  E-value=1.6e-05  Score=62.05  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHH--hCCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAA--SFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~--~~~~~~~evSA~t  102 (238)
                      ..+++++++|. +..+... ......+..    .+.|+++|+||+|+......  .........+  ....+++++||++
T Consensus        81 ~~~~~~~v~d~~~~~~~~~-~~~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEID-LEMLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhH-HHHHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence            46788888888 3322211 122222322    35899999999999543322  1222333333  3456799999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy14042        103 HHNVDELLVGILNQ  116 (238)
Q Consensus       103 ~~gv~elf~~i~~~  116 (238)
                      +.|++++++.|.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (170)
T cd01876         156 GQGIDELRALIEKW  169 (170)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.12  E-value=5.1e-06  Score=68.89  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             eEEEEEEEe----CCCcccccC---Cc-eEEEEEEEC-Cc-chHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DE-TGLIIVWML-YK-PSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLAR   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~a-d~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~   75 (238)
                      ..+.+.+||    ++|+..+..   ++ +++|+|+|. +. .++..+..|+..+.....  ...+|++||+||+|+..
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            457799999    667665543   77 999999999 65 688888777766543321  26899999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK13796 GTPase YqeH; Provisional

Probab=98.11  E-value=6.3e-06  Score=74.48  Aligned_cols=90  Identities=23%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             CCCcccccC--Cce-EEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH----HHHHHHHh
Q psy14042         19 EQYEKLTSS--DET-GLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ----DAKNLAAS   90 (238)
Q Consensus        19 e~~~~l~~~--~ad-~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~----~~~~~~~~   90 (238)
                      +.|+.+...  .++ .+++|.|+ |..     ..|..++.++.  .+.|+++|+||+||... ....+    ....+++.
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence            445443333  445 77777787 522     34566666654  47899999999999642 22222    33444566


Q ss_pred             CCC---eEEEEccCCCCCHHHHHHHHHHH
Q psy14042         91 FKV---KFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        91 ~~~---~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      .++   .++.+||++++|+++++..+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            676   58999999999999999999764

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.10  E-value=2.4e-05  Score=63.22  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD   83 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~   83 (238)
                      ..+.++|    +||+-++..   ++.++|++.|. ....| .....++.+...   ..+|++++.||.||....  ++++
T Consensus        68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~  141 (187)
T COG2229          68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL--PPEK  141 (187)
T ss_pred             ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC--CHHH
Confidence            3466777    899988876   99999999999 77777 556666665442   239999999999997643  4556


Q ss_pred             HHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         84 AKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        84 ~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      .+++.+..  ..+.++++|..++++.+.+..+...
T Consensus       142 i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         142 IREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            66655543  8899999999999999998888744

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.09  E-value=2.4e-05  Score=65.96  Aligned_cols=99  Identities=19%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             EEEEEEe----CCCccc-cc----CCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042         12 VRAIIWN----EQYEKL-TS----SDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--   80 (238)
Q Consensus        12 v~l~iWD----e~~~~l-~~----~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--   80 (238)
                      ..+.+.|    ++|..- ..    ..+|++++|.|.+...-.....++..+..    .++|+++|.||+|+.......  
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~  159 (224)
T cd04165          84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQET  159 (224)
T ss_pred             cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHH
Confidence            4577788    555321 11    15799999999844333444555555544    568999999999986433221  


Q ss_pred             HHHHHHHHHh--------------------------CCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         81 SQDAKNLAAS--------------------------FKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        81 ~~~~~~~~~~--------------------------~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      .++...+.+.                          ...|+|.+||.+|+|++++...|.
T Consensus       160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1222222221                          124899999999999999987775

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.08  E-value=6.8e-06  Score=64.39  Aligned_cols=77  Identities=23%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             CceEEEEEEEC-Ccch-HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPS-YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s-~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~  104 (238)
                      +||.+++|.|. ++.+ |-      +.   +...-++|+|-|.||+|+... ....+.++++.+..|+. .|++|+.+|+
T Consensus        63 dad~V~ll~dat~~~~~~p------P~---fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~e  132 (143)
T PF10662_consen   63 DADVVLLLQDATEPRSVFP------PG---FASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGE  132 (143)
T ss_pred             hCCEEEEEecCCCCCccCC------ch---hhcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCc
Confidence            99999999999 5432 22      00   111246899999999999843 22445677777888874 8999999999


Q ss_pred             CHHHHHHHHH
Q psy14042        105 NVDELLVGIL  114 (238)
Q Consensus       105 gv~elf~~i~  114 (238)
                      |+++|+..|-
T Consensus       133 Gi~eL~~~L~  142 (143)
T PF10662_consen  133 GIEELKDYLE  142 (143)
T ss_pred             CHHHHHHHHh
Confidence            9999998763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK01889 GTPase RsgA; Reviewed

Probab=98.05  E-value=2.6e-05  Score=70.26  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|.++ ..-+...+..++..+..    .++|.+||.||+||.....   +....+.. ..+.+++.+|++++.|
T Consensus       112 NvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        112 NVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGEG  184 (356)
T ss_pred             eCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCcc
Confidence            78999999999 44445556666666654    6788899999999975421   11222222 4578999999999999


Q ss_pred             HHHHHHHHH
Q psy14042        106 VDELLVGIL  114 (238)
Q Consensus       106 v~elf~~i~  114 (238)
                      ++++...+.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999888774

>COG2262 HflX GTPases [General function prediction only]

Probab=98.05  E-value=3.3e-05  Score=69.60  Aligned_cols=97  Identities=22%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeE
Q psy14042         19 EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKF   95 (238)
Q Consensus        19 e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~   95 (238)
                      +-|++-...  .||.++.|.|. ++...+.++.-.+-|.... ..+.|+|+|.||+|+..+..    .......... ..
T Consensus       260 ~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~  333 (411)
T COG2262         260 EAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-ADEIPIILVLNKIDLLEDEE----ILAELERGSP-NP  333 (411)
T ss_pred             HHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-CCCCCEEEEEecccccCchh----hhhhhhhcCC-Ce
Confidence            455554433  99999999999 8866666655555444432 36699999999999764433    1111111222 58


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         96 IEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        96 ~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +.+||++|.|++.++..|.+.+....
T Consensus       334 v~iSA~~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         334 VFISAKTGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             EEEEeccCcCHHHHHHHHHHHhhhcc
Confidence            88999999999999999999887554

>cd01856 YlqF YlqF

Probab=98.05  E-value=1.9e-05  Score=63.48  Aligned_cols=83  Identities=22%  Similarity=0.057  Sum_probs=55.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|.+++|+|. ++..-.+ ..+..    ..  .+.|+++|.||+||.....+  ....+..+..+..++.+||+++.|+
T Consensus        19 ~aD~il~v~D~~~~~~~~~-~~i~~----~~--~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi   89 (171)
T cd01856          19 LVDLVIEVRDARIPLSSRN-PLLEK----IL--GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSGKGV   89 (171)
T ss_pred             hCCEEEEEeeccCccCcCC-hhhHh----Hh--cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCcccH
Confidence            89999999999 4432211 11222    21  45799999999999643221  1111222334567899999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14042        107 DELLVGILNQIRL  119 (238)
Q Consensus       107 ~elf~~i~~~l~~  119 (238)
                      +++...+...+..
T Consensus        90 ~~L~~~l~~~l~~  102 (171)
T cd01856          90 KKLLKAAKKLLKD  102 (171)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1159 Era GTPase [General function prediction only]

Probab=97.98  E-value=3.6e-05  Score=66.76  Aligned_cols=90  Identities=22%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv  106 (238)
                      ++|.+++|.|.++.--...+..++.++.    .+.|++++.||+|..............+..... ...+++||++|.|+
T Consensus        85 dvDlilfvvd~~~~~~~~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~  160 (298)
T COG1159          85 DVDLILFVVDADEGWGPGDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV  160 (298)
T ss_pred             cCcEEEEEEeccccCCccHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence            8999999998843222233445555544    578999999999987655532223333333333 36999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14042        107 DELLVGILNQIRLKR  121 (238)
Q Consensus       107 ~elf~~i~~~l~~~~  121 (238)
                      +.+...+...+++..
T Consensus       161 ~~L~~~i~~~Lpeg~  175 (298)
T COG1159         161 DTLLEIIKEYLPEGP  175 (298)
T ss_pred             HHHHHHHHHhCCCCC
Confidence            999999998887654

>TIGR00101 ureG urease accessory protein UreG

Probab=97.97  E-value=2.1e-05  Score=65.14  Aligned_cols=78  Identities=19%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             ceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE--EEEEEeccCCCcccccHHHHHHHHHh--CCCeEEEEccCCC
Q psy14042         29 ETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA--IIVANKIDLARARAVSSQDAKNLAAS--FKVKFIEVSVGIH  103 (238)
Q Consensus        29 ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi--ilVgNK~DL~~~~~v~~~~~~~~~~~--~~~~~~evSA~t~  103 (238)
                      ++.+|+|+|. +-++...  ...         ..+..  ++++||+|+........+...+.++.  .+.+++++||++|
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g  181 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTK  181 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            6778999998 4433211  111         22333  78899999974322223333333333  4578999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy14042        104 HNVDELLVGILNQI  117 (238)
Q Consensus       104 ~gv~elf~~i~~~l  117 (238)
                      +|++++|+++.+.+
T Consensus       182 ~gi~el~~~i~~~~  195 (199)
T TIGR00101       182 EGLDTVIDWIEHYA  195 (199)
T ss_pred             CCHHHHHHHHHhhc
Confidence            99999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.97  E-value=6.2e-05  Score=62.12  Aligned_cols=92  Identities=11%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccc---
Q psy14042         11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAV---   79 (238)
Q Consensus        11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v---   79 (238)
                      ..++.+.|    .+|. .+...  .+|++++|.|.....-...+..+..+.+    .+.| +|+|.||.|+....+.   
T Consensus        64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~  139 (195)
T cd01884          64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLEL  139 (195)
T ss_pred             CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHH
Confidence            34667888    2332 22222  8999999999943322333344444443    4566 7899999999643322   


Q ss_pred             cHHHHHHHHHhCC-----CeEEEEccCCCCCH
Q psy14042         80 SSQDAKNLAASFK-----VKFIEVSVGIHHNV  106 (238)
Q Consensus        80 ~~~~~~~~~~~~~-----~~~~evSA~t~~gv  106 (238)
                      ..+++..+.+..+     ++++.+||++|.|+
T Consensus       140 ~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         140 VEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            2234555555543     67999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.94  E-value=0.00021  Score=65.64  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +|..+.|++-|    -.|.- +.++  -+.|+++|.|. .   .+++.++   +--   ..  .+.-+|-|.||+||+..
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~---YlA---le--~~LeIiPViNKIDLP~A  143 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV---YLA---LE--NNLEIIPVLNKIDLPAA  143 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHH---HHH---HH--cCcEEEEeeecccCCCC
Confidence            56789999999    23321 2222  78899999998 3   2333322   111   22  67888999999999854


Q ss_pred             ccccHHHH-HHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         77 RAVSSQDA-KNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        77 ~~v~~~~~-~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .   ++.. .+...-.|++   .+.+|||+|.||+++++.|++.++.
T Consensus       144 d---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         144 D---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             C---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            2   2222 2333445654   7899999999999999999987754

>PRK12735 elongation factor Tu; Reviewed

Probab=97.93  E-value=5e-05  Score=69.34  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCcccc--
Q psy14042         10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARAV--   79 (238)
Q Consensus        10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~v--   79 (238)
                      ...++.++|    ++|. .+...  ++|++++|+|............+..+..    .++|.+ ++.||+|+....+.  
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~  148 (396)
T PRK12735         73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLE  148 (396)
T ss_pred             CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHH
Confidence            345678999    4442 23322  8899999999943333333344444433    467855 67999999743222  


Q ss_pred             -cHHHHHHHHHhCC-----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q psy14042         80 -SSQDAKNLAASFK-----VKFIEVSVGIHH----------NVDELLVGILNQI  117 (238)
Q Consensus        80 -~~~~~~~~~~~~~-----~~~~evSA~t~~----------gv~elf~~i~~~l  117 (238)
                       ...+++.+.+..+     ++++++||++|+          ++.++++.|...+
T Consensus       149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence             2235556666543     679999999985          5677777776543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.88  E-value=4e-05  Score=71.05  Aligned_cols=95  Identities=12%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHH-------HHHHHHHHHHhcCCCCCC-EEEEEEeccCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHR-------VEQDVIRLHEEGYLRTRP-AIIVANKIDLA   74 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~-------~~~~~~~l~~~~~~~~~p-iilVgNK~DL~   74 (238)
                      ....+.+.|    ++|......   .+|++|+|+|.....|+.       .+.....+..    .++| +|++.||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCC
Confidence            356788899    566443322   999999999995566642       2222222222    4564 78899999986


Q ss_pred             Cc---cc---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHH
Q psy14042         75 RA---RA---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDE  108 (238)
Q Consensus        75 ~~---~~---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~e  108 (238)
                      ..   +.   ...++++.+++..|     ++|+++||++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21   11   01345666677665     6799999999999864

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.87  E-value=7.1e-05  Score=65.03  Aligned_cols=85  Identities=19%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .+|.+|+|.|. ++.+..+  .++.++.     .+.|+++|.||+||...... ....+.+ +..+.+++.+||+++.|+
T Consensus        21 ~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~~~~~vi~iSa~~~~gi   91 (276)
T TIGR03596        21 LVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQWLKYF-EEKGIKALAINAKKGKGV   91 (276)
T ss_pred             hCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHHHHHH-HHcCCeEEEEECCCcccH
Confidence            89999999999 5433222  1222221     35899999999999643221 1122222 335678899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14042        107 DELLVGILNQIRLKR  121 (238)
Q Consensus       107 ~elf~~i~~~l~~~~  121 (238)
                      +++...+.+.+.+..
T Consensus        92 ~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        92 KKIIKAAKKLLKEKN  106 (276)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999988876543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.86  E-value=0.00031  Score=64.24  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCCcccccC----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH----HHHHH
Q psy14042         19 EQYEKLTSS----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA----KNLAA   89 (238)
Q Consensus        19 e~~~~l~~~----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~----~~~~~   89 (238)
                      |.|..+...    .+|.+++|.|. ..-+-++ ......+.+    ..+++++|.||-|+.+......++.    +....
T Consensus       247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~  321 (444)
T COG1160         247 EKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP  321 (444)
T ss_pred             EEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence            555544443    89999999999 4333332 333444433    7899999999999876543333333    33233


Q ss_pred             hC-CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         90 SF-KVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        90 ~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .. ..+.+.+||++|.|++.+|..+.......
T Consensus       322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         322 FLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             cccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            33 35799999999999999999998765544

>KOG1145|consensus

Probab=97.86  E-value=0.00052  Score=64.05  Aligned_cols=161  Identities=19%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      =++.+.|    .-|.+|+..   -+|.++||... |   +++.+.++        +....+.|+|+..||||.+..   .
T Consensus       201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~  269 (683)
T KOG1145|consen  201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---N  269 (683)
T ss_pred             CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---C
Confidence            3456788    667777655   68999999877 4   55555544        222389999999999997632   2


Q ss_pred             HHHHHH-HH------HhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeec
Q psy14042         81 SQDAKN-LA------ASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS  151 (238)
Q Consensus        81 ~~~~~~-~~------~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (238)
                      ++...+ +.      +.+|  .+.+++||++|.|++.|-+.+.-+..-..  .+..+..           .-.++++..+
T Consensus       270 pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~md--LkA~p~g-----------~~eg~VIES~  336 (683)
T KOG1145|consen  270 PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMD--LKADPKG-----------PAEGWVIESS  336 (683)
T ss_pred             HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhh--cccCCCC-----------CceEEEEEee
Confidence            333322 22      3333  56899999999999999888774432211  1111111           3345555544


Q ss_pred             ccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEE-EEeCCCCeeee
Q psy14042        152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH-LYDYEGNFMNK  200 (238)
Q Consensus       152 ~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~d~~g~~~~~  200 (238)
                      .+..|  |+ +. +.+.+----..+.++.-|..=+.|+ ++|.+|..+.+
T Consensus       337 vdkg~--G~-~a-T~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i~~  382 (683)
T KOG1145|consen  337 VDKGR--GP-VA-TVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPIDE  382 (683)
T ss_pred             ecCCc--cc-ee-EEEEeccccccccEEEEechhhhhhhhhhcCCCCccc
Confidence            44332  21 11 1233223344567777777777765 57888887754

>PRK09866 hypothetical protein; Provisional

Probab=97.85  E-value=0.00012  Score=69.93  Aligned_cols=85  Identities=14%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH----hCC---CeEEEEc
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA----SFK---VKFIEVS   99 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~---~~~~evS   99 (238)
                      ++|++++|.|. ...+..+ ....+.+++..  ...|+++|.||+|+.....-..+....+.+    ..+   ..+|++|
T Consensus       258 eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVS  334 (741)
T PRK09866        258 RASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS  334 (741)
T ss_pred             hCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            89999999999 4334333 33445554421  236999999999986433322344444332    222   3589999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy14042        100 VGIHHNVDELLVGILN  115 (238)
Q Consensus       100 A~t~~gv~elf~~i~~  115 (238)
                      |+.|.|+++++..|..
T Consensus       335 AlkG~nid~LLdeI~~  350 (741)
T PRK09866        335 SMWGYLANRARHELAN  350 (741)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999999884

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.85  E-value=6e-05  Score=56.31  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .++++++||+. ++.+++.+  |...+.... ..+.|.++++||.|+.....+..++...        |+++|++++.|+
T Consensus        46 s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~  114 (124)
T smart00010       46 SFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEG  114 (124)
T ss_pred             CCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchh
Confidence            78999999999 89999866  877776533 3678999999999996544555444443        344799999988


Q ss_pred             H
Q psy14042        107 D  107 (238)
Q Consensus       107 ~  107 (238)
                      .
T Consensus       115 ~  115 (124)
T smart00010      115 E  115 (124)
T ss_pred             h
Confidence            4

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.82  E-value=6.4e-05  Score=62.43  Aligned_cols=56  Identities=29%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..|.++++||+|+.........+.....++.  ..+++++||+++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999754332233344434433  4789999999999999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0705|consensus

Probab=97.79  E-value=0.00014  Score=67.69  Aligned_cols=124  Identities=15%  Similarity=0.204  Sum_probs=98.1

Q ss_pred             ccEEEECCeEEEEEEEeCCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--Cc
Q psy14042          2 NQSLQGHSGKVRAIIWNEQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--RA   76 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWDe~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~~   76 (238)
                      .|.+.++++...+-|.||--..-...  .+|++|+||.+ |..+|+.+..+.-++..+.....+|.++|+.+.-..  ..
T Consensus        67 kkE~vv~gqs~lLlirdeg~~~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~  146 (749)
T KOG0705|consen   67 KKEVVVDGQSHLLLIRDEGGHPDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRP  146 (749)
T ss_pred             eeeEEeeccceEeeeecccCCchhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccc
Confidence            57788899999999999544222222  89999999999 999999999988888777656789999999986654  34


Q ss_pred             ccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042         77 RAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ  125 (238)
Q Consensus        77 ~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~  125 (238)
                      +.+...++++++.. ..+.||+++|.+|-+++..|+.++..+....+..+
T Consensus       147 rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  147 RVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQ  196 (749)
T ss_pred             cccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            55556666666555 56889999999999999999999988877755443

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.77  E-value=0.00014  Score=68.88  Aligned_cols=63  Identities=13%  Similarity=0.022  Sum_probs=42.1

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++...+++.+||    +.|......   .+|++|+|+|. +.- ....+.++.....    .++|+++++||+|+.
T Consensus        74 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         74 FPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVCRL----RDTPIFTFINKLDRD  144 (526)
T ss_pred             EEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHHHh----cCCCEEEEEECCccc
Confidence            333457899999    556543222   89999999999 432 2223344443333    679999999999985

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.74  E-value=0.00023  Score=65.23  Aligned_cols=104  Identities=14%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             EEEECCeEEEEEEEe-CCCc----cc---------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN-EQYE----KL---------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD-e~~~----~l---------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+.++|  +.+.+.| .-.|    .+         ... +||.+++|+|. ...+-.+.. .+. .    ...+.|+++|
T Consensus       259 ~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-~----~~~~~~~i~v  330 (454)
T COG0486         259 DINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-L----LPKKKPIIVV  330 (454)
T ss_pred             EEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-h----cccCCCEEEE
Confidence            467777  6677888 1111    11         111 89999999999 431222111 111 1    1278999999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .||+||..+.....     .....+.+++.+||++|+|++.+.+.|.+.+...
T Consensus       331 ~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         331 LNKADLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             Eechhcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            99999976543211     1122355789999999999999999998877655

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.74  E-value=0.00015  Score=63.32  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=57.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .+|++|+|.|. ++.+..+  .++.++   .  .+.|+++|.||+||...... .... ...++.+.+++.+||+++.|+
T Consensus        24 ~aDvIL~VvDar~p~~~~~--~~l~~~---~--~~kp~iiVlNK~DL~~~~~~-~~~~-~~~~~~~~~vi~vSa~~~~gi   94 (287)
T PRK09563         24 LVDVVIEVLDARIPLSSEN--PMIDKI---I--GNKPRLLILNKSDLADPEVT-KKWI-EYFEEQGIKALAINAKKGQGV   94 (287)
T ss_pred             hCCEEEEEEECCCCCCCCC--hhHHHH---h--CCCCEEEEEEchhcCCHHHH-HHHH-HHHHHcCCeEEEEECCCcccH
Confidence            89999999999 5433221  122222   2  36899999999999643211 1122 222344678899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14042        107 DELLVGILNQIRLK  120 (238)
Q Consensus       107 ~elf~~i~~~l~~~  120 (238)
                      +++...+.+.+.+.
T Consensus        95 ~~L~~~l~~~l~~~  108 (287)
T PRK09563         95 KKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887654

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.72  E-value=0.0004  Score=60.70  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             CCCcccccC---CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042         19 EQYEKLTSS---DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV   93 (238)
Q Consensus        19 e~~~~l~~~---~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~   93 (238)
                      +|-..|...   +.|-++||+.. + .-+..-+..++--+..    .++.-+||.||+||.+......++........|.
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy  142 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY  142 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCe
Confidence            444455544   66777777766 4 4555655555554433    7788888899999987655444556667778999


Q ss_pred             eEEEEccCCCCCHHHHHHHHH
Q psy14042         94 KFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        94 ~~~evSA~t~~gv~elf~~i~  114 (238)
                      +++.+|+++++|++++...+.
T Consensus       143 ~v~~~s~~~~~~~~~l~~~l~  163 (301)
T COG1162         143 PVLFVSAKNGDGLEELAELLA  163 (301)
T ss_pred             eEEEecCcCcccHHHHHHHhc
Confidence            999999999999999988776

>KOG0077|consensus

Probab=97.72  E-value=3.3e-05  Score=61.56  Aligned_cols=107  Identities=14%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      +.+.|  ++++..|    ..-|..|.-   .+|++++.+|. |.+.|...+.-++-+.......+.|+++.+||+|++..
T Consensus        59 l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   59 LSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             heecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence            44544  7888889    333445544   89999999999 99999999888888776655689999999999999754


Q ss_pred             ccccHHHHHHHH---HhC-----------C---CeEEEEccCCCCCHHHHHHHHHH
Q psy14042         77 RAVSSQDAKNLA---ASF-----------K---VKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        77 ~~v~~~~~~~~~---~~~-----------~---~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      -  ++++.+...   ...           +   ...|.||...+.|.-+.|.++..
T Consensus       137 ~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  137 A--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             c--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence            3  333332211   110           1   34788898888887777777654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.71  E-value=0.00012  Score=68.00  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             EEEEEe----CCC-cccccC--CceEEEEEEECCcc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HH
Q psy14042         13 RAIIWN----EQY-EKLTSS--DETGLIIVWMLYKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQ   82 (238)
Q Consensus        13 ~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~   82 (238)
                      .+.+.|    ++| +.+...  .+|++++|.|.+.. .-...+..+..+.. .  .-.|+|+|.||+|+.......  .+
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l--gi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M--KLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c--CCCcEEEEEecccccCHHHHHHHHH
Confidence            578899    555 333333  89999999999432 11111222222221 1  234689999999997533221  12


Q ss_pred             HHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         83 DAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        83 ~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +.+.+.+.   .+.+++.+||++|.|++.|++.|.+.+.
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            33333332   3578999999999999999998886543

>PRK13351 elongation factor G; Reviewed

Probab=97.67  E-value=0.00023  Score=69.43  Aligned_cols=61  Identities=13%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ..+++++||    .+|...+..   .+|++|+|+|. +...++....| ..+..    .++|+++|+||+|+..
T Consensus        71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence            357899999    456544433   89999999999 66666655444 33433    5789999999999853

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.64  E-value=0.00028  Score=64.48  Aligned_cols=82  Identities=18%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv  106 (238)
                      .||++|||.|....--..-+.....|++    .+.|++||.||+|-..     .+......-.+|+ +.+.+||..|.|+
T Consensus        83 eADvilfvVD~~~Git~~D~~ia~~Lr~----~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          83 EADVILFVVDGREGITPADEEIAKILRR----SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHh----cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence            8999999999933222222333333332    6799999999999652     1222223334565 5899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      .+|.+.+++.++
T Consensus       154 ~dLld~v~~~l~  165 (444)
T COG1160         154 GDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHhhcC
Confidence            999999999874

>cd00066 G-alpha G protein alpha subunit

Probab=97.63  E-value=0.00044  Score=61.31  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----------chHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----------PSYHRVEQDVIRLHEEGYLRTRPAIIVANKI   71 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----------~s~~~~~~~~~~l~~~~~~~~~piilVgNK~   71 (238)
                      ..+.+.+||    ...|..|..   +++++|+|.|+ +-          ..+......+..+.......+.|++|++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            358899999    566777766   99999999999 52          4566666666666654434789999999999


Q ss_pred             cCCCc---------------c-cccHHHHHHHHH--------h--CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         72 DLARA---------------R-AVSSQDAKNLAA--------S--FKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        72 DL~~~---------------~-~v~~~~~~~~~~--------~--~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      |+-.+               . .-..+.+..+..        .  ..+-...++|....++..+|..+...+....
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            97211               0 112233322221        1  1234567899999999999999988876543

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.61  E-value=0.00019  Score=65.80  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-cc--
Q psy14042         11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-VS--   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-v~--   80 (238)
                      ..++.++|    ++|. .+...  .+|++|+|.|.........+.....+...   ...++++|.||+|+..... ..  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence            35788999    5563 33333  99999999998432222222111222221   2346899999999964221 11  


Q ss_pred             -HHHHHHHHHhCC---CeEEEEccCCCCCHHHH
Q psy14042         81 -SQDAKNLAASFK---VKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        81 -~~~~~~~~~~~~---~~~~evSA~t~~gv~el  109 (238)
                       .++...+.+..+   ++++++||++|.|++++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             123333444444   47999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>smart00275 G_alpha G protein alpha subunit

Probab=97.59  E-value=0.0011  Score=59.55  Aligned_cols=115  Identities=11%  Similarity=0.061  Sum_probs=77.6

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      +.+++  +.+.+||    ..+|+.|..   +++++|+|.|+ +          ...+......+..+.......+.|++|
T Consensus       179 f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil  256 (342)
T smart00275      179 FIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIIL  256 (342)
T ss_pred             EEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEE
Confidence            34444  6789999    566788866   99999999999 5          245666666777766544347899999


Q ss_pred             EEEeccCCCc---------------ccccHHHHHHHHH-----h------CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         67 VANKIDLARA---------------RAVSSQDAKNLAA-----S------FKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        67 VgNK~DL~~~---------------~~v~~~~~~~~~~-----~------~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ++||.|+..+               ..-..+.+..+..     .      ..+-.+.++|.+-.++..+|..+...+...
T Consensus       257 ~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      257 FLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             EEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            9999998321               0011222222211     1      123457788999999999999988877654


Q ss_pred             h
Q psy14042        121 R  121 (238)
Q Consensus       121 ~  121 (238)
                      .
T Consensus       337 ~  337 (342)
T smart00275      337 N  337 (342)
T ss_pred             H
Confidence            3

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.57  E-value=0.00035  Score=62.03  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=40.9

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHH-HHHHHHHhhh
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLV-GILNQIRLKR  121 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~-~i~~~l~~~~  121 (238)
                      ..|+|+|+||+|+......    ...+.... ..+++.+||+.+.+++++.+ .+++.+++..
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~  272 (318)
T cd01899         214 SKPMVIAANKADIPDAENN----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS  272 (318)
T ss_pred             CCcEEEEEEHHHccChHHH----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence            4699999999998543221    11222233 46799999999999999997 5887775543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.56  E-value=0.00016  Score=67.56  Aligned_cols=97  Identities=20%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-ccH-
Q psy14042         11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-VSS-   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-v~~-   81 (238)
                      ..++.++|    ++|. .+...  .+|++++|.|.+.......+.-...+.. .  ...|+|+|.||+|+..... ... 
T Consensus       106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-l--g~~~iIvvvNKiD~~~~~~~~~~~  182 (474)
T PRK05124        106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-L--GIKHLVVAVNKMDLVDYSEEVFER  182 (474)
T ss_pred             CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-h--CCCceEEEEEeeccccchhHHHHH
Confidence            45788999    5553 23332  8999999999943221111111111111 1  2357899999999974222 111 


Q ss_pred             --HHHHHHHHhC----CCeEEEEccCCCCCHHHHH
Q psy14042         82 --QDAKNLAASF----KVKFIEVSVGIHHNVDELL  110 (238)
Q Consensus        82 --~~~~~~~~~~----~~~~~evSA~t~~gv~elf  110 (238)
                        ++...+.+..    ..+++++||++|+|++++-
T Consensus       183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence              1233333333    3679999999999998753

>KOG1423|consensus

Probab=97.55  E-value=0.00021  Score=62.40  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-------------cccH--HHH-HHHHH-
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-------------AVSS--QDA-KNLAA-   89 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-------------~v~~--~~~-~~~~~-   89 (238)
                      .||++++|+|+ +....-+ ...+..+..|   ..+|-+||.||+|....+             ++..  .+. +++.. 
T Consensus       155 ~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~  230 (379)
T KOG1423|consen  155 NADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV  230 (379)
T ss_pred             hCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence            89999999999 5221111 2334444545   579999999999975332             1111  111 11111 


Q ss_pred             --------hCCC----eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         90 --------SFKV----KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        90 --------~~~~----~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                              ..|+    .+|.+||++|+||+++.+.|..++...
T Consensus       231 p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  231 PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             CcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence                    0112    289999999999999999999766443

>PRK13768 GTPase; Provisional

Probab=97.49  E-value=0.00057  Score=58.70  Aligned_cols=87  Identities=17%  Similarity=0.092  Sum_probs=55.5

Q ss_pred             ceEEEEEEEC-CcchHHHH--HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHH------------------
Q psy14042         29 ETGLIIVWML-YKPSYHRV--EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAK------------------   85 (238)
Q Consensus        29 ad~~IlV~dv-d~~s~~~~--~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~------------------   85 (238)
                      ++++++|+|. ......+.  ..|+.......  .+.|+++|.||+|+....+...  ....                  
T Consensus       129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  206 (253)
T PRK13768        129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGL  206 (253)
T ss_pred             CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHH
Confidence            7899999998 43323222  22333222222  5799999999999965433211  0001                  


Q ss_pred             ------HHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         86 ------NLAASFK--VKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        86 ------~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                            +..+..+  .+++++||+++.|++++...|.+.+
T Consensus       207 ~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        207 LSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             HHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence                  1122333  5789999999999999999998765

>CHL00071 tufA elongation factor Tu

Probab=97.47  E-value=0.00057  Score=62.70  Aligned_cols=92  Identities=11%  Similarity=0.198  Sum_probs=58.3

Q ss_pred             EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc--
Q psy14042         11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS--   80 (238)
Q Consensus        11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~--   80 (238)
                      ..++.+-|    .+| ..+...  .+|++++|.|.........+..+..+..    .++| +|++.||.|+....+..  
T Consensus        74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~  149 (409)
T CHL00071         74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLEL  149 (409)
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHH
Confidence            34566778    233 223222  8999999999954433444444444443    4678 77899999997543322  


Q ss_pred             -HHHHHHHHHhCC-----CeEEEEccCCCCCH
Q psy14042         81 -SQDAKNLAASFK-----VKFIEVSVGIHHNV  106 (238)
Q Consensus        81 -~~~~~~~~~~~~-----~~~~evSA~t~~gv  106 (238)
                       .+++..+.+..+     ++++.+||.+|+|+
T Consensus       150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        150 VELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence             235555555543     68999999999743

>TIGR00503 prfC peptide chain release factor 3

Probab=97.47  E-value=0.00057  Score=64.71  Aligned_cols=65  Identities=17%  Similarity=0.095  Sum_probs=42.5

Q ss_pred             EECCeEEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .++.+.+++.+||    +.|.... ..  .+|++|+|+|...........+...+..    .+.|+++++||+|+.
T Consensus        74 ~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~----~~~PiivviNKiD~~  145 (527)
T TIGR00503        74 QFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             EEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh----cCCCEEEEEECcccc
Confidence            3444568899999    4554322 22  8999999999932222223444443332    578999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.46  E-value=0.00073  Score=55.59  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=57.0

Q ss_pred             CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-----------ccHHHHHHH----HHhC
Q psy14042         28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARA-----------VSSQDAKNL----AASF   91 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-----------v~~~~~~~~----~~~~   91 (238)
                      ++|.++++-+   .+|... ..|+..+++    .+.|+++|+||+|+.....           ...++.++.    .+..
T Consensus        80 ~~d~~l~v~~---~~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISS---TRFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeC---CCCCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            6787777632   234444 456666655    3589999999999842111           111122222    2222


Q ss_pred             C---CeEEEEccC--CCCCHHHHHHHHHHHHHhhhcc
Q psy14042         92 K---VKFIEVSVG--IHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        92 ~---~~~~evSA~--t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      +   .++|.+|+.  .++++..+...+...+.+.++.
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            2   358999998  6799999999999999876643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=97.43  E-value=0.0012  Score=56.09  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             eEEEEEEEe----CCCcccc----cC----CceEEEEEEEC-CcchH---HHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042         10 GKVRAIIWN----EQYEKLT----SS----DETGLIIVWML-YKPSY---HRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~----~~----~ad~~IlV~dv-d~~s~---~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ..+.++|||    ..|....    ..    ++.++|+|+|+ +.+-.   ..+...+..+.++.  +++.+.+...|.|+
T Consensus        46 ~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~  123 (232)
T PF04670_consen   46 SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDL  123 (232)
T ss_dssp             TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCC
T ss_pred             CCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeeccc
Confidence            346899999    2232221    11    99999999999 44433   33445566666665  78999999999999


Q ss_pred             CCccc--ccH----HHHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         74 ARARA--VSS----QDAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        74 ~~~~~--v~~----~~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..+..  ...    +.+...+...+   +.|+.||.-. +.+-+++..+++.+..+
T Consensus       124 l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  124 LSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHccc
Confidence            64321  111    22333444555   7899999998 68999999999776543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12740 elongation factor G; Reviewed

Probab=97.42  E-value=0.00062  Score=66.27  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=40.5

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+.+||    .+|...+..   .+|++|+|+|. +.........| ..+..    .+.|+++|+||+|+.
T Consensus        59 ~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         59 GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence            47889999    334332222   89999999999 55555544333 33333    578999999999985

>cd04169 RF3 RF3 subfamily

Probab=97.41  E-value=0.00061  Score=59.01  Aligned_cols=66  Identities=15%  Similarity=0.044  Sum_probs=43.3

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      .+..+.+++++||    ++|......   .+|++|+|+|. +... .....+...+..    .++|+++++||+|+...
T Consensus        65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~a  138 (267)
T cd04169          65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREGR  138 (267)
T ss_pred             EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence            3444568899999    555542222   89999999999 4322 222333333322    57899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK00049 elongation factor Tu; Reviewed

Probab=97.38  E-value=0.0013  Score=60.04  Aligned_cols=102  Identities=15%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCccccc--
Q psy14042         11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARAVS--   80 (238)
Q Consensus        11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~v~--   80 (238)
                      ..++.+.|    ++| ..+...  .+|++++|.|.........+..+..+..    .+.|.+ ++.||.|+....+..  
T Consensus        74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~  149 (396)
T PRK00049         74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLEL  149 (396)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHH
Confidence            34567788    333 223222  8999999999944333444444544444    468876 589999997432221  


Q ss_pred             -HHHHHHHHHhC-----CCeEEEEccCCCC----------CHHHHHHHHHHH
Q psy14042         81 -SQDAKNLAASF-----KVKFIEVSVGIHH----------NVDELLVGILNQ  116 (238)
Q Consensus        81 -~~~~~~~~~~~-----~~~~~evSA~t~~----------gv~elf~~i~~~  116 (238)
                       ..++..+.+..     .++++.+||+++.          ++..+++.|...
T Consensus       150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence             22444444443     3679999999875          456666666643

>PLN03126 Elongation factor Tu; Provisional

Probab=97.34  E-value=0.00063  Score=63.65  Aligned_cols=92  Identities=13%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc-
Q psy14042         10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS-   80 (238)
Q Consensus        10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~-   80 (238)
                      ...++.++|    ++|- .+...  .+|++++|.|.........+.++..+..    .++| ++++.||+|+....+.. 
T Consensus       142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~  217 (478)
T PLN03126        142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLE  217 (478)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHH
Confidence            345778999    4453 23222  8899999999844333334444444444    4678 77899999997533221 


Q ss_pred             --HHHHHHHHHhC-----CCeEEEEccCCCCC
Q psy14042         81 --SQDAKNLAASF-----KVKFIEVSVGIHHN  105 (238)
Q Consensus        81 --~~~~~~~~~~~-----~~~~~evSA~t~~g  105 (238)
                        .+++..+.+..     .++++.+||.+|.+
T Consensus       218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        218 LVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence              22455555553     46799999999854

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00056  Score=52.26  Aligned_cols=77  Identities=21%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             CceEEEEEEEC-Ccch-HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPS-YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s-~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~  104 (238)
                      ++|++++|... ++.| |.-      .   +...-.+|+|-|.+|.||.++..+  +..+++..+.|. ++|++|+.++.
T Consensus        64 dadvi~~v~~and~~s~f~p------~---f~~~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~  132 (148)
T COG4917          64 DADVIIYVHAANDPESRFPP------G---FLDIGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQ  132 (148)
T ss_pred             ccceeeeeecccCccccCCc------c---cccccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcc
Confidence            99999999988 6533 220      0   222346779999999999864443  345666667775 69999999999


Q ss_pred             CHHHHHHHHHH
Q psy14042        105 NVDELLVGILN  115 (238)
Q Consensus       105 gv~elf~~i~~  115 (238)
                      |+++++..|..
T Consensus       133 gv~~l~~~L~~  143 (148)
T COG4917         133 GVEELVDYLAS  143 (148)
T ss_pred             cHHHHHHHHHh
Confidence            99999998873

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.26  E-value=0.00078  Score=65.18  Aligned_cols=94  Identities=23%  Similarity=0.248  Sum_probs=56.3

Q ss_pred             EEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc-cccc---
Q psy14042         12 VRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA-RAVS---   80 (238)
Q Consensus        12 v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~-~~v~---   80 (238)
                      .++.++|    ++|.. +...  .+|++++|.|.+.......+.....+...   ...|+++|.||+|+... .+..   
T Consensus       104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i  180 (632)
T PRK05506        104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEI  180 (632)
T ss_pred             ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHH
Confidence            4677999    44432 2222  89999999999433222222222222221   33578999999999642 1111   


Q ss_pred             HHHHHHHHHhCC---CeEEEEccCCCCCHHH
Q psy14042         81 SQDAKNLAASFK---VKFIEVSVGIHHNVDE  108 (238)
Q Consensus        81 ~~~~~~~~~~~~---~~~~evSA~t~~gv~e  108 (238)
                      ..+...+.+..+   .+++++||++|.|+++
T Consensus       181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        181 VADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            123344445555   4699999999999984

>PLN03127 Elongation factor Tu; Provisional

Probab=97.24  E-value=0.0025  Score=59.25  Aligned_cols=103  Identities=15%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccH-
Q psy14042         11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSS-   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~-   81 (238)
                      ..++.+.|    ++|- .+...  .+|++++|.|.+.......+..+..+..    .++| +|++.||+|+....+... 
T Consensus       123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~  198 (447)
T PLN03127        123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLEL  198 (447)
T ss_pred             CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHH
Confidence            34677889    4442 22222  8999999999943333333444444443    5688 578899999975333221 


Q ss_pred             --HHHHHHHHhC-----CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q psy14042         82 --QDAKNLAASF-----KVKFIEVSVG---IHHN-------VDELLVGILNQI  117 (238)
Q Consensus        82 --~~~~~~~~~~-----~~~~~evSA~---t~~g-------v~elf~~i~~~l  117 (238)
                        .+...+.+..     .++++.+||.   +|.|       +.++++.+.+.+
T Consensus       199 i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        199 VEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence              2333444332     3678888876   4555       667777766554

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.0015  Score=62.53  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD  107 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~  107 (238)
                      +.|++|-|.|.  ..++.--..--++.+    -+.|++++.|++|...++.+.- +.+++.+..|+|++++||++|.|++
T Consensus        81 ~~D~ivnVvDA--tnLeRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDA--TNLERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEccc--chHHHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence            67988888776  222222222233433    5789999999999977655543 5678889999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy14042        108 ELLVGILNQIRLKR  121 (238)
Q Consensus       108 elf~~i~~~l~~~~  121 (238)
                      ++...+.+....+.
T Consensus       154 ~l~~~i~~~~~~~~  167 (653)
T COG0370         154 ELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHhccccc
Confidence            99999987655443

>KOG1490|consensus

Probab=97.10  E-value=0.00099  Score=61.68  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             eEEEEEEECCc---chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH---HHHHHHhCCCeEEEEccCCC
Q psy14042         30 TGLIIVWMLYK---PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD---AKNLAASFKVKFIEVSVGIH  103 (238)
Q Consensus        30 d~~IlV~dvd~---~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~---~~~~~~~~~~~~~evSA~t~  103 (238)
                      .+++++.|++.   -|...--.++..|+-.-  .+.|.|+|.||+|+-....++++.   ...+...-+++++++|+.+.
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e  326 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE  326 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence            46777788843   23333333444444333  789999999999997766666543   33444555699999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhcccc
Q psy14042        104 HNVDELLVGILNQIRLKRSLVQ  125 (238)
Q Consensus       104 ~gv~elf~~i~~~l~~~~~~~~  125 (238)
                      +||-++....++.+...+.+..
T Consensus       327 egVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  327 EGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             hceeeHHHHHHHHHHHHHHHHH
Confidence            9999999999999888776554

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.09  E-value=0.0052  Score=50.65  Aligned_cols=88  Identities=18%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHH-HHHHhCCCe--EEEEccCC
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAK-NLAASFKVK--FIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~-~~~~~~~~~--~~evSA~t  102 (238)
                      +-.+++++.|.....-+.-++.++-+.+    .++|+++|+||+|.....+...  .... .+.......  ++..|+.+
T Consensus       106 ~L~~vvlliD~r~~~~~~D~em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~  181 (200)
T COG0218         106 NLKGVVLLIDARHPPKDLDREMIEFLLE----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLK  181 (200)
T ss_pred             hheEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccc
Confidence            4566777777733222222344444544    7899999999999876544322  1222 222223333  78899999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy14042        103 HHNVDELLVGILNQIRL  119 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~  119 (238)
                      +.|++++...|.+.+.+
T Consensus       182 k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         182 KKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccCHHHHHHHHHHHhhc
Confidence            99999999999876643

>KOG0273|consensus

Probab=97.05  E-value=0.00085  Score=61.14  Aligned_cols=52  Identities=19%  Similarity=0.464  Sum_probs=48.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      -+...+|++++..+..|.-+|++++|+.+|+.++.+..|      ..||.+|+|....
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H------kgPI~slKWnk~G  288 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH------KGPIFSLKWNKKG  288 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc------CCceEEEEEcCCC
Confidence            678999999999999999999999999999999999988      7799999998754

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.99  E-value=0.0024  Score=59.35  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=56.8

Q ss_pred             eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHH-------HHHHHHHHHHHhcCCCCCC-EEEEEEeccCC
Q psy14042         10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYH-------RVEQDVIRLHEEGYLRTRP-AIIVANKIDLA   74 (238)
Q Consensus        10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~-------~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~   74 (238)
                      ....+.|.|    ++|. .+...  .+|++|+|.|....-|+       ..+.-+..+..    .++| +|++.||.|+.
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK  158 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence            346788899    4553 23222  99999999999544331       12222222322    4566 67999999953


Q ss_pred             C---cccc---cHHHHHHHHHhC-----CCeEEEEccCCCCCHHH
Q psy14042         75 R---ARAV---SSQDAKNLAASF-----KVKFIEVSVGIHHNVDE  108 (238)
Q Consensus        75 ~---~~~v---~~~~~~~~~~~~-----~~~~~evSA~t~~gv~e  108 (238)
                      .   .+..   ..+++..+.+..     .++++.+||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2   1111   123344444433     36799999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=96.98  E-value=0.0072  Score=52.56  Aligned_cols=70  Identities=11%  Similarity=-0.012  Sum_probs=42.9

Q ss_pred             CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCCCeEEEEccCC
Q psy14042         28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~~~~~evSA~t  102 (238)
                      .+|+++++.+.....+... ...+..+.     ..+|+++|+||+|+....+  .....+.+.++.+++++|......
T Consensus       114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            4555555555432223222 23333332     3689999999999965333  345567777888999988776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.93  E-value=0.0027  Score=55.03  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=49.2

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-cccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-AVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-~v~~~   82 (238)
                      ..++.+||    .+|...+..   .+|++|+|.|.....-......+..+.+    .++|++++.||+|+.... ....+
T Consensus        63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~  138 (270)
T cd01886          63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVE  138 (270)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHH
Confidence            36788999    334332222   8999999999822222222334444443    568999999999997422 11122


Q ss_pred             HHHHHHHhCCCe-EEEEccC
Q psy14042         83 DAKNLAASFKVK-FIEVSVG  101 (238)
Q Consensus        83 ~~~~~~~~~~~~-~~evSA~  101 (238)
                      +++.......++ .+++|+.
T Consensus       139 ~l~~~l~~~~~~~~~Pisa~  158 (270)
T cd01886         139 QIREKLGANPVPLQLPIGEE  158 (270)
T ss_pred             HHHHHhCCCceEEEeccccC
Confidence            333333222222 5667775

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG1707|consensus

Probab=96.93  E-value=0.0065  Score=57.20  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~g  105 (238)
                      -+|++.++||. ++.+|+.+....+.   +......|+++|+.|+||.+..+...-...+++.+++++ ....|.++...
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~v~~~---~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAEVYNK---YFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHHHHHH---hhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence            78999999999 89999987766554   222378999999999999876554444448889999885 56677775333


Q ss_pred             HHHHHHHHHHHHHh
Q psy14042        106 VDELLVGILNQIRL  119 (238)
Q Consensus       106 v~elf~~i~~~l~~  119 (238)
                       .++|..|+.+...
T Consensus       572 -~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  572 -NELFIKLATMAQY  584 (625)
T ss_pred             -chHHHHHHHhhhC
Confidence             8999999977643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.92  E-value=0.0026  Score=55.89  Aligned_cols=59  Identities=20%  Similarity=0.153  Sum_probs=40.0

Q ss_pred             CCCCEEEEEEeccCCCcccccH--HH----HHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         60 RTRPAIIVANKIDLARARAVSS--QD----AKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~--~~----~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .+.|.++|.||+|+........  ..    ...+.+.   +..+++.+||+++.|+++++..+.+...
T Consensus       171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            4577899999999975432111  00    1111111   2346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.87  E-value=0.0046  Score=53.30  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+.+||    ..|...+..   .+|++++|+|. +.........| ..+..    .++|.+++.||+|+....  ..+
T Consensus        63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~~--~~~  135 (268)
T cd04170          63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERAD--FDK  135 (268)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCCC--HHH
Confidence            46788999    334332222   89999999999 54444333333 23333    568999999999987542  223


Q ss_pred             HHHHHHHhCCCeE--EEEccCCCCCHHHHHH
Q psy14042         83 DAKNLAASFKVKF--IEVSVGIHHNVDELLV  111 (238)
Q Consensus        83 ~~~~~~~~~~~~~--~evSA~t~~gv~elf~  111 (238)
                      ....+.+.++.++  +.+...++.++..+.+
T Consensus       136 ~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd  166 (268)
T cd04170         136 TLAALQEAFGRPVVPLQLPIGEGDDFKGVVD  166 (268)
T ss_pred             HHHHHHHHhCCCeEEEEecccCCCceeEEEE
Confidence            3444445555543  3444566555544433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.86  E-value=0.0021  Score=52.81  Aligned_cols=54  Identities=24%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             CEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         63 PAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        63 piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      -=++|.||.||...-....+...+-+++.  +.+++++|++||+|+++++.++...
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            35799999999876666666666666664  5789999999999999998888754

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.83  E-value=0.0067  Score=54.19  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHh-------CCCeEEEE
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAAS-------FKVKFIEV   98 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~-------~~~~~~ev   98 (238)
                      .+|.+++|.+.  .+-++++.....+..      ..-++|.||+|+......  ...+.+.....       +..+++.+
T Consensus       169 ~aD~vlvv~~p--~~gd~iq~~k~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v  240 (332)
T PRK09435        169 MVDFFLLLQLP--GAGDELQGIKKGIME------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTC  240 (332)
T ss_pred             hCCEEEEEecC--CchHHHHHHHhhhhh------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence            78988888553  222333322222222      223899999998754321  11222222221       23579999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh
Q psy14042         99 SVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        99 SA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ||+++.|+++++..|.+.+...
T Consensus       241 SA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        241 SALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>KOG0271|consensus

Probab=96.75  E-value=0.0043  Score=55.50  Aligned_cols=81  Identities=21%  Similarity=0.368  Sum_probs=57.7

Q ss_pred             EeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCee-eeeeeecCCCCCceeEE
Q psy14042        148 IVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFM-NKVSMWSGPGSEMGEIA  215 (238)
Q Consensus       148 ~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~-~~~~~~~~~~~~~~~i~  215 (238)
                      +.|+-|-+ |+|..+.+.         -++.++.|+||++.+--|..+|+|.+||.. |..+ ..+.=|      ...|.
T Consensus       131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH------~K~It  204 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGH------KKWIT  204 (480)
T ss_pred             EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCc------cccee
Confidence            45566666 999866431         288999999999999999999999999963 4443 333322      66899


Q ss_pred             EEEeecCCCcccccccccCC
Q psy14042        216 ALKYYLNRTSARSLNKFEGC  235 (238)
Q Consensus       216 ~~~w~~~~~~~~~~~~~~~~  235 (238)
                      +|.|...+-..+.+ .+|-|
T Consensus       205 ~Lawep~hl~p~~r-~las~  223 (480)
T KOG0271|consen  205 ALAWEPLHLVPPCR-RLASS  223 (480)
T ss_pred             EEeecccccCCCcc-ceecc
Confidence            99998876554433 44443

>TIGR00484 EF-G translation elongation factor EF-G

Probab=96.67  E-value=0.011  Score=57.99  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      ..++.+||    .+|......   .+|++|+|+|. +....+... ++..+..    .++|+++|+||+|+...
T Consensus        74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence            36789999    445443322   89999999999 544444333 3333433    56899999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0036  Score=55.24  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CceEEEEEEECC-----cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHh---CCCeEEE
Q psy14042         28 DETGLIIVWMLY-----KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAAS---FKVKFIE   97 (238)
Q Consensus        28 ~ad~~IlV~dvd-----~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~---~~~~~~e   97 (238)
                      =.|++++|...+     +++-+.+.       ...-..-..+|+|-||+||...+..  ..+++.+|.+-   -+.|.+.
T Consensus       109 lMDgAlLvIaANEpcPQPQT~EHl~-------AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIP  181 (415)
T COG5257         109 LMDGALLVIAANEPCPQPQTREHLM-------ALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIP  181 (415)
T ss_pred             hhcceEEEEecCCCCCCCchHHHHH-------HHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceee
Confidence            358899998872     23333221       1111134568999999999765443  34567777764   3689999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         98 VSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        98 vSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +||..+.|+|.+++.|.+.++.-..
T Consensus       182 iSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         182 ISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             ehhhhccCHHHHHHHHHHhCCCCcc
Confidence            9999999999999999988865543

>PRK12739 elongation factor G; Reviewed

Probab=96.59  E-value=0.013  Score=57.29  Aligned_cols=58  Identities=17%  Similarity=0.111  Sum_probs=37.3

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .++.++|    ..|...+..   .+|++|+|.|. +.-.-+. +..+..+.+    .+.|++++.||+|+.
T Consensus        73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~  138 (691)
T PRK12739         73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRI  138 (691)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCC
Confidence            5678899    233322222   89999999999 4322222 233333433    568999999999986

>KOG1144|consensus

Probab=96.55  E-value=0.014  Score=56.51  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=66.3

Q ss_pred             EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc------
Q psy14042         14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA------   76 (238)
Q Consensus        14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~------   76 (238)
                      +.+.|    |.|..|.+.   -+|.+|+|.|+ .   +++.+.+.    .|+.    .+.|+|++.||+|..-.      
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~----rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM----RKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh----cCCCeEEeehhhhhhcccccCCC
Confidence            44566    888777765   78999999999 3   55555433    2222    78999999999996211      


Q ss_pred             -----------ccccH-------HHHHHHHHh-C-----------C--CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         77 -----------RAVSS-------QDAKNLAAS-F-----------K--VKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        77 -----------~~v~~-------~~~~~~~~~-~-----------~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                                 ..+..       .-..+|+++ +           +  +..+++||.+|+||.+|+..|++..+....
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence                       00100       011122221 1           1  346889999999999999999988766543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.50  E-value=0.061  Score=49.31  Aligned_cols=102  Identities=16%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             EEEEEe-CCC----cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042         13 RAIIWN-EQY----EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK   85 (238)
Q Consensus        13 ~l~iWD-e~~----~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~   85 (238)
                      .+.+-| ..|    ++|...  ..|.+++|.+.|..--....+-+.-+.-   ..-.-.++|.+|+|+.+...+. +..+
T Consensus        51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdl---lgi~~giivltk~D~~d~~r~e-~~i~  126 (447)
T COG3276          51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDL---LGIKNGIIVLTKADRVDEARIE-QKIK  126 (447)
T ss_pred             ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHh---cCCCceEEEEeccccccHHHHH-HHHH
Confidence            566777 233    344444  8899999998843222222222222221   1334469999999997654221 1222


Q ss_pred             HHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         86 NLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        86 ~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +....   ...++|.+|+++|+||+++...|.....
T Consensus       127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            22222   2457899999999999999999998774

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.49  E-value=0.0058  Score=53.45  Aligned_cols=56  Identities=18%  Similarity=0.203  Sum_probs=39.5

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHh--CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAAS--FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~--~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..+-++|.||+||........+...+..+.  ...+++.+||++|+|++++..+|.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            467789999999965322222233333333  25789999999999999999999753

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.49  E-value=0.0074  Score=53.29  Aligned_cols=86  Identities=14%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CceEEEEEEECCcch---HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWMLYKPS---YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s---~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      =+++++++||..+.+   .+.-..++++++..-   +.|+++|.||+|+...+.+...+.. +....+.....+++..+.
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~  322 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGC  322 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehh
Confidence            467888899995444   444445666666543   3899999999999765443332222 333334447778999999


Q ss_pred             CHHHHHHHHHHHH
Q psy14042        105 NVDELLVGILNQI  117 (238)
Q Consensus       105 gv~elf~~i~~~l  117 (238)
                      +++.+...+....
T Consensus       323 ~~d~~~~~v~~~a  335 (346)
T COG1084         323 GLDKLREEVRKTA  335 (346)
T ss_pred             hHHHHHHHHHHHh
Confidence            9998887777554

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=96.48  E-value=0.021  Score=52.83  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             EEECCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042          5 LQGHSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR   77 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~   77 (238)
                      |..++  ++++|.|    ..|-- +-..  -.|+++++.|..+.+.-..+.-+.+..+    .+.+-|+|.||+|.+..+
T Consensus        63 v~~~~--~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Ar  136 (603)
T COG1217          63 VNYNG--TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA----LGLKPIVVINKIDRPDAR  136 (603)
T ss_pred             eecCC--eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCC
Confidence            34444  7889999    22211 1111  5899999999966555555555555544    567778889999998653


Q ss_pred             c--ccHHHHHHHH------HhCCCeEEEEccCCCC----------CHHHHHHHHHHHHHh
Q psy14042         78 A--VSSQDAKNLA------ASFKVKFIEVSVGIHH----------NVDELLVGILNQIRL  119 (238)
Q Consensus        78 ~--v~~~~~~~~~------~~~~~~~~evSA~t~~----------gv~elf~~i~~~l~~  119 (238)
                      .  +..+-..-|.      .++++|++..|++.|+          +..-||+.|++.++.
T Consensus       137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            2  2222222222      3467899999998873          677888888877644

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.48  E-value=0.011  Score=38.80  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             ceEEEEEEECCc---chHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042         29 ETGLIIVWMLYK---PSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus        29 ad~~IlV~dvd~---~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      .+++++++|...   -|.+.=..++.+++..-  .+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            578899999933   34555556777777655  6999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0283|consensus

Probab=96.37  E-value=0.016  Score=55.96  Aligned_cols=83  Identities=20%  Similarity=0.428  Sum_probs=64.1

Q ss_pred             eeecceEEeecccCc-eeeec---------ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee-e--eeeecCC
Q psy14042        141 LVRASAVIVGSVDGN-RIWGK---------EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN-K--VSMWSGP  207 (238)
Q Consensus       141 ~~~~~~~~~~~~~g~-rv~g~---------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~-~--~~~~~~~  207 (238)
                      +..+...+-|+.||. |+|+-         +++. ++..+.+.|||+...+||-+|.|++|+.+|+.+. .  +.++..-
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            367788899999998 99984         3454 7788899999999999999999999999999843 3  3333333


Q ss_pred             CCCceeEEEEEeecCCC
Q psy14042        208 GSEMGEIAALKYYLNRT  224 (238)
Q Consensus       208 ~~~~~~i~~~~w~~~~~  224 (238)
                      +...-+|.|+.-..+..
T Consensus       498 k~~~~rITG~Q~~p~~~  514 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDP  514 (712)
T ss_pred             cccCceeeeeEecCCCC
Confidence            33344899999776544

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.20  E-value=0.019  Score=51.28  Aligned_cols=92  Identities=24%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHH--HHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVE--QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~--~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      .=++.|=|    |.| |.|.+.  -||.+|++.|....-++..+  .++..+.     .=+.++|..||.||.+-.+--.
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHH
Confidence            34567778    556 566665  89999999998555444442  2333332     3356899999999986433222


Q ss_pred             ----HHHHHHHHhCCC---eEEEEccCCCCCHH
Q psy14042         82 ----QDAKNLAASFKV---KFIEVSVGIHHNVD  107 (238)
Q Consensus        82 ----~~~~~~~~~~~~---~~~evSA~t~~gv~  107 (238)
                          .+...|++++++   .++++||..|+||-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                345667888875   59999999999875

>KOG0647|consensus

Probab=96.02  E-value=0.038  Score=48.19  Aligned_cols=75  Identities=20%  Similarity=0.368  Sum_probs=62.0

Q ss_pred             ecceEEeecccCc-eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCC
Q psy14042        143 RASAVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGS  209 (238)
Q Consensus       143 ~~~~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~  209 (238)
                      ...+...++-||+ |+|--+            +.. .+..+.|+.|+..++.|..+|++.+||-.-+.+.++.+|     
T Consensus        39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H-----  112 (347)
T KOG0647|consen   39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH-----  112 (347)
T ss_pred             cCceEEecccCCceEEEEEecCCcccchhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec-----
Confidence            3455567788887 887532            344 788999999999999999999999999998899999999     


Q ss_pred             CceeEEEEEeecCCC
Q psy14042        210 EMGEIAALKYYLNRT  224 (238)
Q Consensus       210 ~~~~i~~~~w~~~~~  224 (238)
                       +.++..++|-.+-.
T Consensus       113 -d~pvkt~~wv~~~~  126 (347)
T KOG0647|consen  113 -DAPVKTCHWVPGMN  126 (347)
T ss_pred             -ccceeEEEEecCCC
Confidence             67888888887654

>KOG1532|consensus

Probab=95.90  E-value=0.18  Score=43.92  Aligned_cols=91  Identities=12%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-----HHHHHHHH----------
Q psy14042         28 DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-----SQDAKNLA----------   88 (238)
Q Consensus        28 ~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-----~~~~~~~~----------   88 (238)
                      ..-++++|.|. .   +.+|-.-.-+-..|. |.  ...|.|+|.||+|+....-..     .+..++..          
T Consensus       147 ~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-yk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~  223 (366)
T KOG1532|consen  147 FPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-YK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSN  223 (366)
T ss_pred             CCeEEEEEecCCcCCCchhHHHHHHHHHHHH-Hh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence            44555556665 2   333433333333333 22  789999999999996542111     01111111          


Q ss_pred             ---------Hh--CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         89 ---------AS--FKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        89 ---------~~--~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                               .+  .++..+-|||.||.|.+++|.++-+.+.+..
T Consensus       224 l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  224 LTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             hhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence                     11  2467899999999999999999987776543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=95.89  E-value=0.035  Score=49.14  Aligned_cols=55  Identities=33%  Similarity=0.387  Sum_probs=43.8

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      -+|.+.|.||+|+..     .++...+.+..  .++.+||++++|++++.+.|.+.+--.+-
T Consensus       239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liRV  293 (365)
T COG1163         239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIRV  293 (365)
T ss_pred             eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEEE
Confidence            479999999999975     33444444444  78999999999999999999998866553

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=95.87  E-value=0.03  Score=55.10  Aligned_cols=64  Identities=9%  Similarity=0.029  Sum_probs=42.0

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..++..+.+.+||    .+|......   .+|++|+|+|. +.-..+... .+..+.+    .+.|+++++||+|..
T Consensus        80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~  151 (720)
T TIGR00490        80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK----ENVKPVLFINKVDRL  151 (720)
T ss_pred             eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH----cCCCEEEEEEChhcc
Confidence            3566779999999    556543333   99999999998 422122212 2222222    467889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1161 Predicted GTPases [General function prediction only]

Probab=95.77  E-value=0.021  Score=50.75  Aligned_cols=79  Identities=18%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ..|.++-|.|. ++.+..+     ..+.++.  .+.|.++|+||+||..... .....+.+.++.+...+.++++.+.+.
T Consensus        34 ~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~~~~~~~v~~~~~~~~  105 (322)
T COG1161          34 SVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYFKKEEGIKPIFVSAKSRQGG  105 (322)
T ss_pred             cCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHHHhcCCCccEEEEeecccCc
Confidence            78999999999 7654432     2233333  4556699999999976544 455667777777888888999988887


Q ss_pred             HHHHHHHH
Q psy14042        107 DELLVGIL  114 (238)
Q Consensus       107 ~elf~~i~  114 (238)
                      ..+...+.
T Consensus       106 ~~i~~~~~  113 (322)
T COG1161         106 KKIRKALE  113 (322)
T ss_pred             cchHHHHH
Confidence            77765443

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=95.76  E-value=0.023  Score=45.92  Aligned_cols=44  Identities=18%  Similarity=0.050  Sum_probs=26.3

Q ss_pred             eEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042         30 TGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus        30 d~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      |++++|.|. ++.+-. ...+.+.+.  ....+.|+++|.||+||...
T Consensus         1 DvVl~VvDar~p~~~~-~~~i~~~~~--l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCR-CPQVEEAVL--QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCC-CHHHHHHHH--hccCCCCEEEEEehhhcCCH
Confidence            678888888 532221 122222221  11156899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.71  E-value=0.037  Score=34.89  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFM  198 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~  198 (238)
                      .+....|+|.-.++-+|+.+|+|.+|.-+|.-+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            677999999999999999999999999987653

>KOG1191|consensus

Probab=95.33  E-value=0.066  Score=49.73  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             CceEEEEEEECCcchHHH---HHHHHHHHHHhc----C-CCCCCEEEEEEeccCCCc-ccccHHHHHHHHHhCC---Ce-
Q psy14042         28 DETGLIIVWMLYKPSYHR---VEQDVIRLHEEG----Y-LRTRPAIIVANKIDLARA-RAVSSQDAKNLAASFK---VK-   94 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~---~~~~~~~l~~~~----~-~~~~piilVgNK~DL~~~-~~v~~~~~~~~~~~~~---~~-   94 (238)
                      .||.+++|+|.....++.   +...++....-.    . ....|++++.||+|+... .+........... .+   .+ 
T Consensus       348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i  426 (531)
T KOG1191|consen  348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPI  426 (531)
T ss_pred             hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccce
Confidence            899999999983223322   223333321110    0 134789999999999654 2211111111111 22   23 


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         95 FIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        95 ~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..++|++|++|++++...+...+......
T Consensus       427 ~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  427 VVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             EEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            56699999999999999999888776653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.09  E-value=0.042  Score=44.84  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=39.7

Q ss_pred             EEEEEe----CCCcc--ccc---C-CceEEEEEEEC--CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCC
Q psy14042         13 RAIIWN----EQYEK--LTS---S-DETGLIIVWML--YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLAR   75 (238)
Q Consensus        13 ~l~iWD----e~~~~--l~~---~-~ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~   75 (238)
                      .+.+.|    ++.|.  +..   . .+.++|+|.|.  +...+.++.+++-.+.....  ...+|++|+.||.|+..
T Consensus        50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            467788    44443  222   2 88999999998  35566666665555544332  37889999999999853

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.99  E-value=0.09  Score=45.42  Aligned_cols=61  Identities=23%  Similarity=0.341  Sum_probs=48.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeec-CCCCCceeEEEEEeecCCCcc
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWS-GPGSEMGEIAALKYYLNRTSA  226 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~-~~~~~~~~i~~~~w~~~~~~~  226 (238)
                      .-.++.||||..++.+...+|.|++||..|..+..+.-.+ .++.-...|+||---..+.++
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~  106 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSA  106 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecccccc
Confidence            5678999999999999999999999999999887666554 344446778888665555443

>PRK00007 elongation factor G; Reviewed

Probab=94.86  E-value=0.19  Score=49.28  Aligned_cols=29  Identities=17%  Similarity=0.099  Sum_probs=24.6

Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         93 VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        93 ~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +|++..||.++.|++.+++.|++.++.-.
T Consensus       255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~  283 (693)
T PRK00007        255 VPVLCGSAFKNKGVQPLLDAVVDYLPSPL  283 (693)
T ss_pred             EEEEecccccCcCHHHHHHHHHHHCCChh
Confidence            46788899999999999999998886543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.82  E-value=0.095  Score=47.76  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CeEEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHH----HHHHHH--HHHhcCCCCCCEEEEEEeccCCC
Q psy14042          9 SGKVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRV----EQDVIR--LHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         9 ~~~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~----~~~~~~--l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .....+.|.|    ..| ..+...  +||++|||.|.+...|+.-    -+..+.  |.+.-  .-..+|++.||.|+.+
T Consensus        82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~  159 (428)
T COG5256          82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVS  159 (428)
T ss_pred             cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccc
Confidence            3346788888    222 334443  9999999999954444332    111111  22221  3345789999999975


Q ss_pred             cccccH----HHHHHHHHhCC-----CeEEEEccCCCCCHHHH
Q psy14042         76 ARAVSS----QDAKNLAASFK-----VKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        76 ~~~v~~----~~~~~~~~~~~-----~~~~evSA~t~~gv~el  109 (238)
                      -++--.    .+...+.+..|     ++|+++||..|.|+.+.
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            322111    12333555544     56999999999997653

>cd01882 BMS1 Bms1

Probab=94.72  E-value=0.15  Score=42.82  Aligned_cols=89  Identities=12%  Similarity=0.069  Sum_probs=49.1

Q ss_pred             EEEEEEEe--CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccCCCccccc---H
Q psy14042         11 KVRAIIWN--EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDLARARAVS---S   81 (238)
Q Consensus        11 ~v~l~iWD--e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~~~v~---~   81 (238)
                      ..++.+.|  ..+..+...  .+|++++|.|. ...... ...++..+..    .+.|. ++|.||.|+.......   .
T Consensus        82 ~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~~~~~-~~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~  156 (225)
T cd01882          82 KRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEME-TFEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTK  156 (225)
T ss_pred             CceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcCCCHH-HHHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHH
Confidence            34556677  222222222  89999999998 322222 2233333433    45774 5599999996432211   1


Q ss_pred             HHHHH-HHHh--CCCeEEEEccCCCC
Q psy14042         82 QDAKN-LAAS--FKVKFIEVSVGIHH  104 (238)
Q Consensus        82 ~~~~~-~~~~--~~~~~~evSA~t~~  104 (238)
                      .+++. +.++  .+.+++.+||++.-
T Consensus       157 ~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         157 KRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            22222 3322  24689999999883

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0302|consensus

Probab=94.69  E-value=0.16  Score=45.61  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=61.6

Q ss_pred             ecceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC----CCeeeeeeeecC
Q psy14042        143 RASAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE----GNFMNKVSMWSG  206 (238)
Q Consensus       143 ~~~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~----g~~~~~~~~~~~  206 (238)
                      +.++....+.||. |+|..+...           .-++-+.|+-.+.++.+|-.+|+++|||-.    |..+..++.|  
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--  346 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--  346 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--
Confidence            4567777788888 999876551           135667999999999999999999999973    6667778877  


Q ss_pred             CCCCceeEEEEEeecCCCc
Q psy14042        207 PGSEMGEIAALKYYLNRTS  225 (238)
Q Consensus       207 ~~~~~~~i~~~~w~~~~~~  225 (238)
                          ..||.+|+|+....+
T Consensus       347 ----k~pItsieW~p~e~s  361 (440)
T KOG0302|consen  347 ----KAPITSIEWHPHEDS  361 (440)
T ss_pred             ----cCCeeEEEeccccCc
Confidence                789999999977665

>PRK07560 elongation factor EF-2; Reviewed

Probab=94.58  E-value=0.13  Score=50.74  Aligned_cols=63  Identities=11%  Similarity=0.080  Sum_probs=39.2

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++..+.+.+.|    .+|......   .+|++|+|.|.....-...+..+..+.+    .+.|.|++.||+|+.
T Consensus        83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence            44568889999    445332222   8999999999833222222222233333    346889999999975

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=94.55  E-value=0.21  Score=43.85  Aligned_cols=73  Identities=14%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             cccccC--CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc---HHHHHHHHHhC
Q psy14042         22 EKLTSS--DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS---SQDAKNLAASF   91 (238)
Q Consensus        22 ~~l~~~--~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~~~~~   91 (238)
                      +.|...  +.|++|||.+. |   +++-+.+    -..++    -.+| ++++.||+|+.++++..   +.+.+.+..++
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            445544  89999999988 4   3333322    11111    3565 67889999998765543   34677888887


Q ss_pred             CC-----eEEEEccCC
Q psy14042         92 KV-----KFIEVSVGI  102 (238)
Q Consensus        92 ~~-----~~~evSA~t  102 (238)
                      ++     |++.-||..
T Consensus       162 ~f~gd~~Pii~gSal~  177 (394)
T COG0050         162 GFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCCcceeechhhh
Confidence            64     466666653

>COG3596 Predicted GTPase [General function prediction only]

Probab=94.36  E-value=0.094  Score=45.46  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc---------------cccHHHHHHHHHhC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR---------------AVSSQDAKNLAASF   91 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~---------------~v~~~~~~~~~~~~   91 (238)
                      ..|.++++.+. |+.---+.+.| .++....  -+.|++++.|.+|.....               +...+....+.+..
T Consensus       117 ~~DLvL~l~~~~draL~~d~~f~-~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         117 KLDLVLWLIKADDRALGTDEDFL-RDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hccEEEEeccCCCccccCCHHHH-HHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            78877777777 65433333333 3333322  458999999999985431               11111222222221


Q ss_pred             --CCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         92 --KVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        92 --~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                        -.|++.+|...+||++++...+++.++....
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence              2478889999999999999999998875443

>KOG0461|consensus

Probab=93.93  E-value=0.29  Score=43.92  Aligned_cols=105  Identities=19%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             CeEEEEEEEe-CCCcccccC------CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc--c
Q psy14042          9 SGKVRAIIWN-EQYEKLTSS------DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA--R   77 (238)
Q Consensus         9 ~~~v~l~iWD-e~~~~l~~~------~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--~   77 (238)
                      +...++.+.| .-..+|...      =.|..++|.|+ . .++-..-.-.+.++..      ...++|.||+|+..+  +
T Consensus        67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr  140 (522)
T KOG0461|consen   67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQR  140 (522)
T ss_pred             cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhh
Confidence            4456677788 444455443      34777888888 2 2222222233444322      456788899887432  2


Q ss_pred             ccc-HHHHHHHHHh---C----CCeEEEEccCCC----CCHHHHHHHHHHHHHh
Q psy14042         78 AVS-SQDAKNLAAS---F----KVKFIEVSVGIH----HNVDELLVGILNQIRL  119 (238)
Q Consensus        78 ~v~-~~~~~~~~~~---~----~~~~~evSA~t~----~gv~elf~~i~~~l~~  119 (238)
                      .-. ++...++.+.   .    +.|.+++||+.|    +++.++...|-+.+.+
T Consensus       141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            222 2222333332   1    268999999999    5666666665555543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=93.79  E-value=0.19  Score=42.73  Aligned_cols=58  Identities=28%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             CCCCEEEEEEeccCCCcc--c----------c-------cHHHHHHHH---HhCC-C-eEEEEccCCCCCHHHHHHHHHH
Q psy14042         60 RTRPAIIVANKIDLARAR--A----------V-------SSQDAKNLA---ASFK-V-KFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~--~----------v-------~~~~~~~~~---~~~~-~-~~~evSA~t~~gv~elf~~i~~  115 (238)
                      -+.|.|.|.||+||....  .          .       .....++++   ..++ . .|+.+|+.+++|+++++..+-+
T Consensus       155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~  234 (238)
T PF03029_consen  155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK  234 (238)
T ss_dssp             HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred             CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence            479999999999997622  0          0       000111222   2333 3 7999999999999999988765


Q ss_pred             HH
Q psy14042        116 QI  117 (238)
Q Consensus       116 ~l  117 (238)
                      .+
T Consensus       235 a~  236 (238)
T PF03029_consen  235 AN  236 (238)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG3886|consensus

Probab=93.75  E-value=0.12  Score=43.92  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=55.9

Q ss_pred             EEEEEEEe--------CCCcccccC----CceEEEEEEEC-Ccc---hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN--------EQYEKLTSS----DETGLIIVWML-YKP---SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD--------e~~~~l~~~----~ad~~IlV~dv-d~~---s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++.|.+||        |.|-+....    +.+++|+|||+ .++   .|...+.-++.+.++.  ++..++....|.||.
T Consensus        52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv  129 (295)
T KOG3886|consen   52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLV  129 (295)
T ss_pred             hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhc
Confidence            46789999        444333222    89999999999 443   3444445555566655  778899999999996


Q ss_pred             C--cccccHH----HHHHHHHhCCCeEEEEccCC
Q psy14042         75 R--ARAVSSQ----DAKNLAASFKVKFIEVSVGI  102 (238)
Q Consensus        75 ~--~~~v~~~----~~~~~~~~~~~~~~evSA~t  102 (238)
                      .  .++....    ..+.+....++.++.+|.-+
T Consensus       130 ~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD  163 (295)
T KOG3886|consen  130 QEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD  163 (295)
T ss_pred             ccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence            3  2333222    22333334456677777653

>PRK09602 translation-associated GTPase; Reviewed

Probab=93.71  E-value=0.094  Score=48.03  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHH-HHHHHHHHHHhh
Q psy14042         60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDE-LLVGILNQIRLK  120 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~e-lf~~i~~~l~~~  120 (238)
                      ...|+++|.||+|+.....    ....+.+..+..++.+||+.+.++++ +++.+++.++..
T Consensus       216 t~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~  273 (396)
T PRK09602        216 ISKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD  273 (396)
T ss_pred             cCCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence            3589999999999753221    12223322345689999999999999 777777666544

>KOG0282|consensus

Probab=93.63  E-value=0.11  Score=47.93  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042        156 RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRTS  225 (238)
Q Consensus       156 rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~  225 (238)
                      ++.|-.... .-.++++|||+..+.-|.++|-+.+||-.- ..+.+++.+      ..+++++.|+...+|
T Consensus       425 ~feGh~vaG-ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah------~~~ci~v~wHP~e~S  488 (503)
T KOG0282|consen  425 RFEGHSVAG-YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH------DQPCIGVDWHPVEPS  488 (503)
T ss_pred             hhcceeccC-ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC------CcceEEEEecCCCcc
Confidence            555555554 667889999999999999999999999974 447777776      678999999998876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.54  E-value=0.17  Score=29.48  Aligned_cols=27  Identities=22%  Similarity=0.539  Sum_probs=25.8

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEe
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYD  192 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d  192 (238)
                      .+....|+|++..+.-|..+|.|++||
T Consensus        13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   13 SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEEecccccceeeCCCCEEEEEC
Confidence            788999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=93.48  E-value=0.54  Score=41.34  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH--HH----Hh--CCCeEEEEc
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN--LA----AS--FKVKFIEVS   99 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~--~~----~~--~~~~~~evS   99 (238)
                      -+|.+++|--.  ..=+.++-+...+..      +-=|+|.||.|....+....+....  +.    .+  +.-+++.+|
T Consensus       164 ~aDt~~~v~~p--g~GD~~Q~iK~GimE------iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~  235 (323)
T COG1703         164 MADTFLVVMIP--GAGDDLQGIKAGIME------IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTS  235 (323)
T ss_pred             hcceEEEEecC--CCCcHHHHHHhhhhh------hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEee
Confidence            45666666543  222333333333333      3346788999965432211111111  11    11  234699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042        100 VGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus       100 A~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      |.+|+|+++++..|.+........
T Consensus       236 A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         236 ALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             eccCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999877665544

>KOG3905|consensus

Probab=93.41  E-value=0.18  Score=44.91  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=47.7

Q ss_pred             CCCEEEEEEeccCC----Cccc-------ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         61 TRPAIIVANKIDLA----RARA-------VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        61 ~~piilVgNK~DL~----~~~~-------v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .+|+++|.+|||+.    ...+       .....++.|+-.+|...+.+|++...|++-+...|+..+...
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            58999999999982    1111       122467889999999999999999999999999998776543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=93.36  E-value=0.13  Score=44.20  Aligned_cols=58  Identities=21%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             CCEEEEEEeccCCCcccccHHHHHHHH---Hh----CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         62 RPAIIVANKIDLARARAVSSQDAKNLA---AS----FKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        62 ~piilVgNK~DL~~~~~v~~~~~~~~~---~~----~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ++=++|.||+|++..+.... +.+...   ..    +..|++.|||.++.|+++++..|.+.-...
T Consensus       168 iaDi~vVNKaD~~gA~~~~~-~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  168 IADIFVVNKADRPGADRTVR-DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             H-SEEEEE--SHHHHHHHHH-HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hccEEEEeCCChHHHHHHHH-HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            45578889999653322211 222222   11    235899999999999999999998765443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG4640|consensus

Probab=92.68  E-value=0.39  Score=45.81  Aligned_cols=73  Identities=18%  Similarity=0.307  Sum_probs=53.4

Q ss_pred             ecceEEeecccCceeeecccceeeeE-EEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEee
Q psy14042        143 RASAVIVGSVDGNRIWGKEFKKTSML-GVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYY  220 (238)
Q Consensus       143 ~~~~~~~~~~~g~rv~g~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~  220 (238)
                      ..|-.++.+..=+|+|.=.+....+. .++|.|||+++-+|.+||+|.++|.. |.-+..-     +-+....|-.+.|-
T Consensus        40 ~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~-----~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   40 EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF-----LFSVETDISKGIWD  114 (665)
T ss_pred             cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc-----ccccccchheeecc
Confidence            44555555566679998664444555 99999999999999999999999996 4444432     22346688899996

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=92.64  E-value=1.4  Score=40.12  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             EEEEEEEe---C-CCcccccC---CceEEEEEEEC-C--c--------chHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042         11 KVRAIIWN---E-QYEKLTSS---DETGLIIVWML-Y--K--------PSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus        11 ~v~l~iWD---e-~~~~l~~~---~ad~~IlV~dv-d--~--------~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      ...+.++|   . .-|+=|..   +++++|+|.++ +  .        ..+.+.-.....+.....-.+.|++|+.||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            36778999   1 12333333   99999999997 2  2        33555555666665544337899999999999


Q ss_pred             CCC------c----------cc--ccHHHHHHHHH--------h----CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         73 LAR------A----------RA--VSSQDAKNLAA--------S----FKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        73 L~~------~----------~~--v~~~~~~~~~~--------~----~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      +-.      .          ..  -..+.+..+..        .    ..+-+..|+|....++..+|..+.+.|
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            721      0          11  12233333221        1    122456888988899999988887543

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=92.61  E-value=1.3  Score=36.02  Aligned_cols=92  Identities=16%  Similarity=0.141  Sum_probs=57.1

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCccccc------HHHHHHHHHhCCCeEEEEc-
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVS------SQDAKNLAASFKVKFIEVS-   99 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~------~~~~~~~~~~~~~~~~evS-   99 (238)
                      +.|++|+|.++++.+ ......++.+++..+. .-.++++|.|+.|-.....+.      ....+.+.+..+-.|+..+ 
T Consensus        83 g~~~illVi~~~~~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~  161 (196)
T cd01852          83 GPHAFLLVVPLGRFT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNN  161 (196)
T ss_pred             CCEEEEEEEECCCcC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeC
Confidence            789999999984322 2223344445443221 236788999999865432221      1345556666665554444 


Q ss_pred             ----cCCCCCHHHHHHHHHHHHHhh
Q psy14042        100 ----VGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus       100 ----A~t~~gv~elf~~i~~~l~~~  120 (238)
                          +..+.++++|+..|-+.+.++
T Consensus       162 ~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         162 KAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhc
Confidence                456788999999998888764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=92.30  E-value=0.88  Score=42.09  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=54.5

Q ss_pred             CceEEEEEE-EC-----CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEcc
Q psy14042         28 DETGLIIVW-ML-----YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV  100 (238)
Q Consensus        28 ~ad~~IlV~-dv-----d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA  100 (238)
                      +++..|+|. |-     .++.+... ..++++|++    .+.|+++|.||+|-....  ..+...++.+.++.+++.+|+
T Consensus       144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c  217 (492)
T TIGR02836       144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDV  217 (492)
T ss_pred             cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEH
Confidence            788888887 43     24455444 679999987    789999999999932221  233345666778899888877


Q ss_pred             CC--CCCHHHHHHHHHH
Q psy14042        101 GI--HHNVDELLVGILN  115 (238)
Q Consensus       101 ~t--~~gv~elf~~i~~  115 (238)
                      ..  .+.|..++..+..
T Consensus       218 ~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       218 ESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHcCHHHHHHHHHHHHh
Confidence            53  3445555555543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=92.19  E-value=1.2  Score=35.61  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             eEEEEEEEe--CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH
Q psy14042         10 GKVRAIIWN--EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA   84 (238)
Q Consensus        10 ~~v~l~iWD--e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~   84 (238)
                      ..+.+.|.|  ..+.... ..  .+|.++++...+..+...+..+++.+.+    .+.|+.+|.||.|....   ...+.
T Consensus        91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~---~~~~~  163 (179)
T cd03110          91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRH----FGIPVGVVINKYDLNDE---IAEEI  163 (179)
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc---hHHHH
Confidence            346677888  2222211 11  8999999988877788888888887765    35678999999997532   23456


Q ss_pred             HHHHHhCCCeEEE
Q psy14042         85 KNLAASFKVKFIE   97 (238)
Q Consensus        85 ~~~~~~~~~~~~e   97 (238)
                      +++.++.+++++.
T Consensus       164 ~~~~~~~~~~vl~  176 (179)
T cd03110         164 EDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHcCCCeEE
Confidence            6677777887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1424|consensus

Probab=92.14  E-value=0.11  Score=48.48  Aligned_cols=77  Identities=12%  Similarity=0.088  Sum_probs=49.4

Q ss_pred             CCCcccccC--CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042         19 EQYEKLTSS--DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV   93 (238)
Q Consensus        19 e~~~~l~~~--~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~   93 (238)
                      |-.|.||.-  .+|.+|.+.|+ ++--|.  ++..++.++   .  .....+|+.||.||....++.  .........++
T Consensus       163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~---d--~~K~~~LLvNKaDLl~~~qr~--aWa~YF~~~ni  235 (562)
T KOG1424|consen  163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEV---D--PSKANVLLVNKADLLPPEQRV--AWAEYFRQNNI  235 (562)
T ss_pred             HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcc---c--cccceEEEEehhhcCCHHHHH--HHHHHHHhcCc
Confidence            445777776  89999999999 654443  222333322   1  456789999999997543321  12223344569


Q ss_pred             eEEEEccCC
Q psy14042         94 KFIEVSVGI  102 (238)
Q Consensus        94 ~~~evSA~t  102 (238)
                      +++.-||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            999999986

>KOG0458|consensus

Probab=91.93  E-value=0.99  Score=42.94  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             EEECCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHH------HHHHHHHhcCCCCCCEEEEEEec
Q psy14042          5 LQGHSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQ------DVIRLHEEGYLRTRPAIIVANKI   71 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~------~~~~l~~~~~~~~~piilVgNK~   71 (238)
                      ..++.....+.|.|    ..|-+ +...  .||++|||.|.....|+.--.      -...+.+.-  .-.-++++.||.
T Consensus       248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKm  325 (603)
T KOG0458|consen  248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKM  325 (603)
T ss_pred             EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecc
Confidence            34456667788999    33322 2222  899999999997766664321      122222222  345688999999


Q ss_pred             cCCCccccc----HHHHHHHH-HhCC-----CeEEEEccCCCCCHHHH
Q psy14042         72 DLARARAVS----SQDAKNLA-ASFK-----VKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        72 DL~~~~~v~----~~~~~~~~-~~~~-----~~~~evSA~t~~gv~el  109 (238)
                      |+.+=.+--    ...+..+. +..|     +.|++||+.+|+|+-..
T Consensus       326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            996321111    12233344 3344     46999999999997544

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=91.21  E-value=1.4  Score=40.16  Aligned_cols=81  Identities=15%  Similarity=0.018  Sum_probs=44.5

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HHHHHH-------------------
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQDAKN-------------------   86 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~-------------------   86 (238)
                      ..|..+++...|...-.-.++-+.-+..    -+.|+++|.+|+|+..+..+.  .+++.+                   
T Consensus       226 k~dYglLvVaAddG~~~~tkEHLgi~~a----~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v  301 (527)
T COG5258         226 KVDYGLLVVAADDGVTKMTKEHLGIALA----MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVV  301 (527)
T ss_pred             ccceEEEEEEccCCcchhhhHhhhhhhh----hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhH
Confidence            5566666655533322222222222221    479999999999996442221  111111                   


Q ss_pred             ---HHHhCC---CeEEEEccCCCCCHHHHHHH
Q psy14042         87 ---LAASFK---VKFIEVSVGIHHNVDELLVG  112 (238)
Q Consensus        87 ---~~~~~~---~~~~evSA~t~~gv~elf~~  112 (238)
                         .+-..+   .|+|.+|+.||+|++-|...
T Consensus       302 ~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~  333 (527)
T COG5258         302 LAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF  333 (527)
T ss_pred             HhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence               111112   58999999999998755443

>KOG0468|consensus

Probab=91.15  E-value=0.29  Score=47.31  Aligned_cols=61  Identities=18%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .++++.++|.|    -.|.. ++..  -+|++++|+|+ .--.++ ....+...-+    .+.|+++|.||.|.
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHH
Confidence            46778888999    33332 2222  79999999999 444444 3444444433    67999999999996

>KOG0090|consensus

Probab=91.10  E-value=1  Score=37.79  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             CceEEEEEEEC--CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML--YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~  103 (238)
                      .+-++|+|.|.  ......++..++-.+.-...  .+.+|++++-||.|+                        .-|++.
T Consensus       108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl------------------------~tAkt~  163 (238)
T KOG0090|consen  108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL------------------------FTAKTA  163 (238)
T ss_pred             cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh------------------------hhcCcH
Confidence            67788888877  45555666555555544442  378899999999998                        567777


Q ss_pred             CCHHHHHHHHHHHHHhhhc
Q psy14042        104 HNVDELLVGILNQIRLKRS  122 (238)
Q Consensus       104 ~gv~elf~~i~~~l~~~~~  122 (238)
                      +-|...++.=+..+++.+.
T Consensus       164 ~~Ir~~LEkEi~~lr~sRs  182 (238)
T KOG0090|consen  164 EKIRQQLEKEIHKLRESRS  182 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            7777777777777766654

>KOG0273|consensus

Probab=91.04  E-value=0.95  Score=41.82  Aligned_cols=80  Identities=25%  Similarity=0.446  Sum_probs=62.5

Q ss_pred             ceEEeecccCc-eeeeccc--------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        145 SAVIVGSVDGN-RIWGKEF--------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      .+...|+.+|. |+|-+.=        .+..+....|+-.+..++-|..+|.+.+||.+ |....+..+++.+      =
T Consensus       248 ~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~------~  321 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP------A  321 (524)
T ss_pred             CeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC------c
Confidence            45568888998 9997752        12388999999999999999999999999995 8888899998544      3


Q ss_pred             EEEEeecCCCcccccc
Q psy14042        215 AALKYYLNRTSARSLN  230 (238)
Q Consensus       215 ~~~~w~~~~~~~~~~~  230 (238)
                      ..++|-.+.+=..+.+
T Consensus       322 lDVdW~~~~~F~ts~t  337 (524)
T KOG0273|consen  322 LDVDWQSNDEFATSST  337 (524)
T ss_pred             cceEEecCceEeecCC
Confidence            5678887766444333

>smart00320 WD40 WD40 repeats

Probab=90.79  E-value=0.52  Score=25.33  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=24.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEe
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYD  192 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d  192 (238)
                      .+....|.+.+..+..|..+|.+++||
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            677889999999999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1538|consensus

Probab=90.76  E-value=0.77  Score=44.37  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      .+.+..|++|++.+.+|..||+|.+-+..|..--++.-+-++   +++|-+|.|..+++
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~---Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS---NSPIWSICWNPSSG  189 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC---CCCceEEEecCCCC
Confidence            577889999999999999999999999999987777765444   45788888877655

>KOG0082|consensus

Probab=90.63  E-value=1.7  Score=39.17  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             EEEEEEe---CCC-cccccC---CceEEEEEEEC---Ccch--------HHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042         12 VRAIIWN---EQY-EKLTSS---DETGLIIVWML---YKPS--------YHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus        12 v~l~iWD---e~~-~~l~~~---~ad~~IlV~dv---d~~s--------~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      ..+.+.|   .|- |.=|.+   +++++|+|.++   |.-.        ......+.+.+....--.+.++||..||.||
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            6778888   111 222222   99999999988   3222        2222334444444332368999999999998


Q ss_pred             CCc--------------ccc-cHHHHHHH--------HHhC--CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARA--------------RAV-SSQDAKNL--------AASF--KVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~--------------~~v-~~~~~~~~--------~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      -.+              ... ..+++..+        .+..  .+-+..+.|..-.+|+.+|..+...+....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            221              111 12222222        1111  233567788899999999999998887654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=90.41  E-value=0.65  Score=43.53  Aligned_cols=61  Identities=21%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             CCCEEEEEEeccCCC----ccc-------ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         61 TRPAIIVANKIDLAR----ARA-------VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        61 ~~piilVgNK~DL~~----~~~-------v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .+|++||.+|+|.-.    +..       .....++.++-.+|+..|.||++...+++-++..|...+....
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~  267 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP  267 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence            379999999999731    111       1223477888999999999999999999999988887775543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0466|consensus

Probab=89.91  E-value=0.32  Score=42.96  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=45.0

Q ss_pred             CCEEEEEEeccCCCccccc--HHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         62 RPAIIVANKIDLARARAVS--SQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        62 ~piilVgNK~DL~~~~~v~--~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..++++-||+||..+.+..  .+++..|.+-   .+.|.+.+||+.+.|++-+.+.|++.++.-
T Consensus       180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            4689999999997544332  2455566553   367999999999999999999999877543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=89.90  E-value=2  Score=34.79  Aligned_cols=52  Identities=15%  Similarity=0.339  Sum_probs=39.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .+....|+|++..+..|..+|.|++||.. |..+..+..+      ..+|.++.|....
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~  189 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH------TGEVNSVAFSPDG  189 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC------ccccceEEECCCc
Confidence            57788999998888888889999999986 6656555533      3467777776653

>KOG2106|consensus

Probab=89.80  E-value=1.3  Score=41.51  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             ceEEeecccCc-eeeeccc--------ceeeeEEEEeCCCCCeEEEEeeCceEEEEe--CCCCeeeeeeeecCCCCCcee
Q psy14042        145 SAVIVGSVDGN-RIWGKEF--------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYD--YEGNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d--~~g~~~~~~~~~~~~~~~~~~  213 (238)
                      +..++|...|. -|...+-        +..++..+.++|+++.+-.|+.++-|+||-  .+|+.+.++....+     ++
T Consensus       419 g~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-----s~  493 (626)
T KOG2106|consen  419 GVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-----SP  493 (626)
T ss_pred             ceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-----ce
Confidence            56667777765 3322221        123678889999999999999999999985  47888999998854     79


Q ss_pred             EEEEEeecCCCc
Q psy14042        214 IAALKYYLNRTS  225 (238)
Q Consensus       214 i~~~~w~~~~~~  225 (238)
                      |..++|-.+..=
T Consensus       494 ithLDwS~Ds~~  505 (626)
T KOG2106|consen  494 ITHLDWSSDSQF  505 (626)
T ss_pred             eEEeeecCCCce
Confidence            999999876553

>KOG1274|consensus

Probab=89.68  E-value=1.1  Score=44.33  Aligned_cols=73  Identities=8%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             ecceEEeecccCc---eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEe
Q psy14042        143 RASAVIVGSVDGN---RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKY  219 (238)
Q Consensus       143 ~~~~~~~~~~~g~---rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w  219 (238)
                      +..+++.......   .+.++.... .+..+.|+|.++.+--|+.+|+|.|||.+-...     +    .....|.++.|
T Consensus       209 d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~----~~~~~Vc~~aw  278 (933)
T KOG1274|consen  209 DNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----H----EFKRAVCCEAW  278 (933)
T ss_pred             CCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----c----cccceeEEEec
Confidence            3344444443332   455666664 688999999999999999999999999986111     1    22557899999


Q ss_pred             ecCCCc
Q psy14042        220 YLNRTS  225 (238)
Q Consensus       220 ~~~~~~  225 (238)
                      ..+..+
T Consensus       279 ~p~~n~  284 (933)
T KOG1274|consen  279 KPNANA  284 (933)
T ss_pred             CCCCCe
Confidence            887776

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=89.64  E-value=4.4  Score=32.83  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ..|.++++.|+ ..-|++.++.=+..+...-  ---.+.++++-..-.+...+..++..+++..+.+|++.+--.+.++.
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f--flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~  141 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF--FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR  141 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhh--hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence            78999999999 8889998876555442211  12345566666666666778889999999999999999988888888


Q ss_pred             HHHHHHHHHHHHh
Q psy14042        107 DELLVGILNQIRL  119 (238)
Q Consensus       107 ~elf~~i~~~l~~  119 (238)
                      ..+-++|.+.+.-
T Consensus       142 ~~lAqRLL~~lqi  154 (176)
T PF11111_consen  142 TSLAQRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777653

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG0305|consensus

Probab=89.58  E-value=0.7  Score=43.29  Aligned_cols=53  Identities=15%  Similarity=0.337  Sum_probs=42.6

Q ss_pred             eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        165 TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       165 ~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      ..+..+.|++++..+-+|+.+|.|.|||.. -+.+..+..+     ....|.+|.|...
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----h~~rvg~laW~~~  271 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----HASRVGSLAWNSS  271 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----cCceeEEEeccCc
Confidence            377889999999999999999999999974 3445555552     3778999999843

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=89.18  E-value=2.9  Score=39.60  Aligned_cols=81  Identities=10%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             ceEEeecccCc-eeeecccce-------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecC--CC------
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKK-------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSG--PG------  208 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~-------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~--~~------  208 (238)
                      ...++|-.||. .++...-.-       +......|.|+++++..|...||+++||.-=+.+.---+.-.  |.      
T Consensus       272 ~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls  351 (545)
T PF11768_consen  272 DKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLS  351 (545)
T ss_pred             ceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeee
Confidence            34456777776 666543221       234556899999999999999999999985444321111111  11      


Q ss_pred             ---CCceeEEEEEeecCCCc
Q psy14042        209 ---SEMGEIAALKYYLNRTS  225 (238)
Q Consensus       209 ---~~~~~i~~~~w~~~~~~  225 (238)
                         .....++.|+|......
T Consensus       352 ~yf~~~~~L~~iqW~~~~~~  371 (545)
T PF11768_consen  352 KYFRVSSSLVHIQWAPAPQL  371 (545)
T ss_pred             hhccCcchhheeEeccCCCc
Confidence               12668999999955443

>PTZ00416 elongation factor 2; Provisional

Probab=89.13  E-value=0.46  Score=47.74  Aligned_cols=60  Identities=13%  Similarity=0.149  Sum_probs=38.4

Q ss_pred             EEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ...+.+.|    .+|.. +...  .+|++|+|.|.....-...+..+..+.+    .+.|++++.||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            56788899    33322 2222  8999999999832222222333444443    468999999999996

>KOG0284|consensus

Probab=88.22  E-value=0.58  Score=42.51  Aligned_cols=57  Identities=23%  Similarity=0.393  Sum_probs=44.1

Q ss_pred             ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      +.+ ..+..+.|+|+++.++.|+.+||+-+|+-.+ +|-..+.-|      +.+|-+|+|-.+.+
T Consensus        94 Kvk-c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaH------Ds~Vr~m~ws~~g~  151 (464)
T KOG0284|consen   94 KVK-CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAH------DSPVRTMKWSHNGT  151 (464)
T ss_pred             ccc-cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhh------cccceeEEEccCCC
Confidence            345 4889999999999999999999999999842 222233333      77899999987654

>KOG1446|consensus

Probab=88.16  E-value=1.4  Score=38.57  Aligned_cols=43  Identities=16%  Similarity=0.392  Sum_probs=36.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPG  208 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~  208 (238)
                      .....+|||+++.++++|..|.+++.|+ .|..+..+..+...+
T Consensus       189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence            4456789999999999999999999999 799888888776544

>PTZ00421 coronin; Provisional

Probab=87.75  E-value=4.3  Score=38.33  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=46.4

Q ss_pred             eEEeecccCc-eeeecc-----------------cceeeeEEEEeCCCC-CeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042        146 AVIVGSVDGN-RIWGKE-----------------FKKTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYE-GNFMNKVSMWS  205 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~-----------------~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~  205 (238)
                      ..+.++.||. ++|.-.                 -.+ .+..+.|+|++ .++..|..+|.|+|||.. |..+..+.-+ 
T Consensus        90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h-  167 (493)
T PTZ00421         90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH-  167 (493)
T ss_pred             EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-
Confidence            4556777887 888532                 122 56778999986 678889999999999975 5544444322 


Q ss_pred             CCCCCceeEEEEEeec
Q psy14042        206 GPGSEMGEIAALKYYL  221 (238)
Q Consensus       206 ~~~~~~~~i~~~~w~~  221 (238)
                           ...|-++.|..
T Consensus       168 -----~~~V~sla~sp  178 (493)
T PTZ00421        168 -----SDQITSLEWNL  178 (493)
T ss_pred             -----CCceEEEEEEC
Confidence                 23566777754

>KOG4273|consensus

Probab=87.58  E-value=1.9  Score=37.12  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             EEeCCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccHHHHHHHHH
Q psy14042         16 IWNEQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSSQDAKNLAA   89 (238)
Q Consensus        16 iWDe~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~~~   89 (238)
                      |.||+|-.-...  -..++++|||+ ....+..++.|+..-    +.+..- .+.+|||.|.....-...+..+++++
T Consensus        64 icde~~lpn~~~a~pl~a~vmvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvphhlahdeyrrrl~k  137 (418)
T KOG4273|consen   64 ICDEKFLPNAEIAEPLQAFVMVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVPHHLAHDEYRRRLAK  137 (418)
T ss_pred             ccchhccCCcccccceeeEEEEEeccchhhhHHHHhhcccc----ccccchhheecccccccccchhhhhHHHHHHHh
Confidence            445777655444  77899999999 788899999998742    123333 56789999976444334444444444

>KOG0288|consensus

Probab=87.55  E-value=1.3  Score=40.34  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=42.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLNRTS  225 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~  225 (238)
                      -..++.|||++..+.-|+.+|.|+||+.. |+...++..+   ++ ..-|-++.|.....+
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s---~s-~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS---TS-NAAITSLSWNPSGSG  445 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC---CC-CcceEEEEEcCCCch
Confidence            35678999999999999999999999997 4555566554   22 236999999875443

>KOG2484|consensus

Probab=87.53  E-value=1.3  Score=40.35  Aligned_cols=71  Identities=20%  Similarity=0.105  Sum_probs=45.2

Q ss_pred             CceEEEEEEEC-CcchHHH--HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHR--VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~--~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      -+|++|-|.|. |+.+-..  ++.|+   .+.  ..+...|||.||+||... ++-..+...|.+++..-.|-+|.....
T Consensus       146 ~sDVVleVlDARDPlgtR~~~vE~~V---~~~--~gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv~fkast~~~~  219 (435)
T KOG2484|consen  146 ASDVVLEVLDARDPLGTRCPEVEEAV---LQA--HGNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTVAFKASTQMQN  219 (435)
T ss_pred             hhheEEEeeeccCCCCCCChhHHHHH---Hhc--cCCceEEEEeehhccCCH-HHHHHHHHHHHhhCCcceeeccccccc
Confidence            78999999999 8755432  22222   111  255889999999999653 334456666666665555555555443

>KOG0266|consensus

Probab=87.52  E-value=2.8  Score=39.03  Aligned_cols=61  Identities=26%  Similarity=0.441  Sum_probs=46.9

Q ss_pred             eEEeecccCc-eeeecccc-e---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecC
Q psy14042        146 AVIVGSVDGN-RIWGKEFK-K---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSG  206 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~-~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~  206 (238)
                      ..+.++.|++ |+|.-.-. +         ..+..+.|+|++.++..|..+|.|+|||.. |..+.++..+..
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence            4555677777 88877222 1         145677999999999999999999999997 677888887754

>KOG0286|consensus

Probab=87.48  E-value=1.1  Score=39.24  Aligned_cols=40  Identities=20%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWS  205 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~  205 (238)
                      .+...+|++|.+.+.-++.+|.+.|||+. +|.++-+.|+|
T Consensus        57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s   97 (343)
T KOG0286|consen   57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS   97 (343)
T ss_pred             ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc
Confidence            67889999999999999999999999995 77788777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=87.13  E-value=2.5  Score=34.21  Aligned_cols=52  Identities=13%  Similarity=0.264  Sum_probs=37.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .+....|+|++..+.+|..+|.+.+||.... ....+..+      ..++..+.|....
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------~~~i~~~~~~~~~   63 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------TGPVRDVAASADG   63 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC------CcceeEEEECCCC
Confidence            7888999999999999999999999998644 33333322      3345566666543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=86.82  E-value=0.84  Score=45.92  Aligned_cols=59  Identities=12%  Similarity=0.115  Sum_probs=38.6

Q ss_pred             EEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+.+.|    ..|.. +...  .+|++|+|.|. .--.... +..+..+..    .+.|++++.||+|+.
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            57788999    44432 2222  89999999998 4322222 222333333    678999999999986

>KOG1143|consensus

Probab=86.80  E-value=4.9  Score=36.71  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             EEEEe----CCCcccccC-----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-----
Q psy14042         14 AIIWN----EQYEKLTSS-----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-----   79 (238)
Q Consensus        14 l~iWD----e~~~~l~~~-----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-----   79 (238)
                      +.+.|    .+|.+.+-.     -.+.+++|.+.++.--...++-+..+..    -++|++++.+|.||.....+     
T Consensus       251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~  326 (591)
T KOG1143|consen  251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVK  326 (591)
T ss_pred             EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHH
Confidence            45666    566554433     6788888888765444444444555544    67999999999999654211     


Q ss_pred             -------------------cHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHH
Q psy14042         80 -------------------SSQDAKNLAAS----FKVKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        80 -------------------~~~~~~~~~~~----~~~~~~evSA~t~~gv~elf~  111 (238)
                                         ..+++-..+++    .-.|+|.+|+.+|+|++-+..
T Consensus       327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence                               12233333333    225899999999999875433

>PTZ00421 coronin; Provisional

Probab=86.53  E-value=4.4  Score=38.27  Aligned_cols=59  Identities=17%  Similarity=0.344  Sum_probs=43.8

Q ss_pred             eEEeecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMW  204 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~  204 (238)
                      ..+.++.||. ++|.-+-.         ...+..+.|+|++..+..|..+|.|++||. .|..+..+..+
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            4556677887 88864311         114778899999999999999999999997 47766655544

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=86.41  E-value=1.9  Score=37.26  Aligned_cols=94  Identities=15%  Similarity=0.051  Sum_probs=52.8

Q ss_pred             CceEEEEEEEC-C---c---ch--HHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCc-ccccH-HHHHHHHHhCCCe
Q psy14042         28 DETGLIIVWML-Y---K---PS--YHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARA-RAVSS-QDAKNLAASFKVK   94 (238)
Q Consensus        28 ~ad~~IlV~dv-d---~---~s--~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~-~~v~~-~~~~~~~~~~~~~   94 (238)
                      ..+|+|++.++ +   .   +.  -...+.+...|.+...  .-..|+.||.+|+|+... .+... -..+...+-+|+.
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t  104 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT  104 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence            56999999988 3   1   11  2223444444443322  268999999999998532 11100 0112222345655


Q ss_pred             EEEEccCCCCC---HHHHHHHHHHHHHhhh
Q psy14042         95 FIEVSVGIHHN---VDELLVGILNQIRLKR  121 (238)
Q Consensus        95 ~~evSA~t~~g---v~elf~~i~~~l~~~~  121 (238)
                      +-.........   +++.|..+...+....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  134 (266)
T PF14331_consen  105 FPYDEDADGDAWAWFDEEFDELVARLNARV  134 (266)
T ss_pred             cCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            44344444444   7788888877776554

>KOG1523|consensus

Probab=86.19  E-value=2.1  Score=37.90  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe----eeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF----MNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      .+.+..|++|...+-++..+.|||||...|+-    .+.+++|      ...+.+|+|-....
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H------d~~vtgvdWap~sn   68 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH------DKIVTGVDWAPKSN   68 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh------CcceeEEeecCCCC
Confidence            78899999999999999999999999998887    4566666      56788999986553

>KOG1273|consensus

Probab=86.12  E-value=2  Score=38.06  Aligned_cols=52  Identities=13%  Similarity=0.373  Sum_probs=45.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      .+.+..||+|+..++-++.+-.|.+||- .|..+.++.+.       +||-+..|+....
T Consensus        67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~-------spv~~~q~hp~k~  119 (405)
T KOG1273|consen   67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-------SPVWGAQWHPRKR  119 (405)
T ss_pred             ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc-------CccceeeeccccC
Confidence            7889999999999999999999999998 69999999886       5788888887544

>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []

Probab=84.73  E-value=0.086  Score=36.04  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=27.4

Q ss_pred             EEeecccCc-eeeecccceeeeEEEEeCCCCCeEEEE
Q psy14042        147 VIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFA  182 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g  182 (238)
                      .|....+|. +|.|+.+++ .+.+++|+.++++.+|.
T Consensus         2 ~I~~~~~g~~~V~g~~ie~-~~~~~~~~~~e~~~rf~   37 (69)
T PF09269_consen    2 EIEREDEGVFVVEGPKIER-LVAMTNFDDEESLRRFQ   37 (69)
T ss_dssp             EEEEEETTEEEEE-HHHHH-HHTTEEE-TGGGHHHHH
T ss_pred             EEEEcCCceEEEEChHHHH-HHHhcCCCCHHHHHHHH
Confidence            455566787 999999998 99999999999987763

OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=83.48  E-value=3.6  Score=33.59  Aligned_cols=51  Identities=14%  Similarity=0.329  Sum_probs=35.4

Q ss_pred             eeEEEEeCCCCCeEEEEe---eCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAI---KGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~---~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      ....+.|+|+++.+.+|.   .+|++.+||..- ..+.+.        +......++|.....
T Consensus       102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------~~~~~t~~~WsPdGr  156 (194)
T PF08662_consen  102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--------EHSDATDVEWSPDGR  156 (194)
T ss_pred             CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--------ccCcEEEEEEcCCCC
Confidence            566789999999999864   468999999972 222222        123467888976543

>KOG1486|consensus

Probab=83.25  E-value=6.9  Score=33.92  Aligned_cols=57  Identities=30%  Similarity=0.367  Sum_probs=44.5

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      -++++-|-||+|     +++.++..++|.+-+  .+-+|+....|++.+++.+.+.+...+.-.
T Consensus       238 Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~L~rvYt  294 (364)
T KOG1486|consen  238 YIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELNLVRVYT  294 (364)
T ss_pred             EEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhceEEEEe
Confidence            468899999998     466777777776543  344789999999999999999987666443

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=83.21  E-value=14  Score=29.81  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q psy14042         41 PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI  113 (238)
Q Consensus        41 ~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i  113 (238)
                      +-...+..|++++++.-  ...-++||-|-.-...  .....+++.+++.+|++++.-+++..-+.+++...+
T Consensus        59 ~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen   59 EIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF  127 (168)
T ss_pred             cCCHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence            44567888999998743  2235899999763322  234568888999999999999998886666555544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=82.76  E-value=12  Score=32.06  Aligned_cols=75  Identities=19%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             EEEEEEe-----CCCcccccCCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCC-CCEEEEEEeccCCCcccccHHHHH
Q psy14042         12 VRAIIWN-----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRT-RPAIIVANKIDLARARAVSSQDAK   85 (238)
Q Consensus        12 v~l~iWD-----e~~~~l~~~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~-~piilVgNK~DL~~~~~v~~~~~~   85 (238)
                      ..+.|.|     |+|-.=+..++|.+|+|.|....|+...+...+...+    -+ .++.+|.||.|-.      .....
T Consensus       134 ~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~e----lg~k~i~~V~NKv~e~------e~~~~  203 (255)
T COG3640         134 YEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEE----LGIKRIFVVLNKVDEE------EELLR  203 (255)
T ss_pred             CcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHH----hCCceEEEEEeeccch------hHHHH
Confidence            4567788     7775544449999999999877788777665554433    34 7899999999843      23445


Q ss_pred             HHHHhCCCeEE
Q psy14042         86 NLAASFKVKFI   96 (238)
Q Consensus        86 ~~~~~~~~~~~   96 (238)
                      ..+...+.++.
T Consensus       204 ~~~~~~~~~vl  214 (255)
T COG3640         204 ELAEELGLEVL  214 (255)
T ss_pred             hhhhccCCeEE
Confidence            55556665443

>KOG0272|consensus

Probab=82.68  E-value=3.8  Score=37.51  Aligned_cols=52  Identities=15%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .+..+.++.++..+.-|+=+|.+.||.. +++.+.++.=|      ...+.++.||...
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH------~~~v~~~~fhP~~  229 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH------TSRVGAAVFHPVD  229 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc------ccceeeEEEccCC
Confidence            7788899999999999999999999999 57777766655      6789999999885

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=82.12  E-value=4.2  Score=29.70  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEe
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANK   70 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK   70 (238)
                      .+|++++|++.+...-+....++.+++     .+.|+++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~-----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPITEDDKNILRELK-----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSHHHHHHHHHHHH-----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCCHHHHHHHHHHh-----cCCCEEEEEcC
Confidence            899999999983321133344445552     67999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>smart00053 DYNc Dynamin, GTPase

Probab=81.33  E-value=4.5  Score=34.51  Aligned_cols=43  Identities=16%  Similarity=0.046  Sum_probs=25.8

Q ss_pred             ceEEEEEEEC--CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042         29 ETGLIIVWML--YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus        29 ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      .+.+++|.|.  +.... +...+...+..    ...|+++|.||+|....
T Consensus       163 ~~IIL~Vvda~~d~~~~-d~l~ia~~ld~----~~~rti~ViTK~D~~~~  207 (240)
T smart00053      163 ECLILAVTPANVDLANS-DALKLAKEVDP----QGERTIGVITKLDLMDE  207 (240)
T ss_pred             cCeEEEEEECCCCCCch-hHHHHHHHHHH----cCCcEEEEEECCCCCCc
Confidence            3466777766  22222 22233333333    67899999999998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-13
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		9e-13
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-12
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-11
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-11
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		4e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-06
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-05
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-05
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-05
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-05
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-05
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-05
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-05
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-05
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-05
4q21_A	189	Molecular Switch For Signal Transduction: Structura		6e-05
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-05
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-05
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-05
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-05
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-05
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-05
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-05
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-05
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-05
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-05
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-05
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-05
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		8e-05
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-05
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		8e-05
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-05
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-05
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-05
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-05
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-05
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-05
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		8e-05
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		9e-05
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		9e-05
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-05
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-05
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-05
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-04
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-04
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-04
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-04
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-04
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-04
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-04
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-04
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-04
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-04
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-04
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-04
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-04
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-04
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-04
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-04
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-04
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-04
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-04
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-04
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-04
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-04
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-04
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-04
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-04
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-04
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-04
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-04
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-04
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-04
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-04
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-04
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-04
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-04
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		7e-04
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-04

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             K IE S  +HHN  EL  G + QIRL+R
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVRQIRLRR 190

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             K IE S  +HHN  EL  G + QIRL+R
Sbjct: 150 SCKHIETSAALHHNTRELFEGAVRQIRLRR 179

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +V + ++RL         P I+V NK DLAR+R VS ++ ++LA + 
Sbjct: 80  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             K IE S  +HHN  EL  G + QIRL+R
Sbjct: 140 SCKHIETSAALHHNTRELFEGAVRQIRLRR 169

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             KFIE S  + HNV EL  GI+ Q+RL+R
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQVRLRR 205

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             KFIE S  + HNV EL  GI+ Q+RL+R
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRR 174

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           +I+  +  K S+ +  +  ++L         P I+V NK DL R+R VS  + +  A  F
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
             KFIE S  +HHNV  L  G++ QIRL+R 
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRD 172

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
             KFIE S  + HNV EL  GI+ Q+RL+R 
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRRD 175

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           +I+  +  K S+ +  +  ++L         P I+V NK DL R+R VS  + +  A  F
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
             KFIE S  +HHNV  L  G++ QIRL+R 
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRD 172

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           +I+  +  K S+ +  +  ++L         P I+V NK DL R+R VS  + +  A  F
Sbjct: 77  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 136
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             KFIE S  +HHNV  L  G++ QIRL+R
Sbjct: 137 DCKFIETSAALHHNVQALFEGVVRQIRLRR 166

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
             KFIE S  + HNV EL  GI+ Q+RL+R 
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQVRLRRD 175

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           R H+  ++   P I+V NK DLAR R VS ++ +  A  F  KFIE S  + HNV EL  
Sbjct: 105 RTHQADHV---PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
Query: 112 G 112
           G
Sbjct: 162 G 162

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 40  KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
           KP Y ++         +G + + P ++V NK D + +R V S +A+ LA ++K  F+E S
Sbjct: 94  KPIYEQI------CEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147
Query: 100 VGIHHNVDELLVGILN 115
             ++HNV EL   +LN
Sbjct: 148 AKLNHNVKELFQELLN 163

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48  QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
           + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V ++E S     NVD
Sbjct: 113 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169
Query: 108 ELLVGILNQIRLKR 121
           ++   ++ +IR ++
Sbjct: 170 KVFFDLMREIRARK 183

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48  QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
           + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V ++E S     NVD
Sbjct: 101 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
Query: 108 ELLVGILNQIRLKR 121
           ++   ++ +IR ++
Sbjct: 158 KVFFDLMREIRARK 171

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48  QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
           + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V ++E S     NVD
Sbjct: 109 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165
Query: 108 ELLVGILNQIRLKR 121
           ++   ++ +IR ++
Sbjct: 166 KVFFDLMREIRARK 179

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48  QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
           + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V ++E S     NVD
Sbjct: 101 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
Query: 108 ELLVGILNQIRLKR 121
           ++   ++ +IR ++
Sbjct: 158 KVFFDLMREIRARK 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y ++TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 45  RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 102
Query: 59  LRTRPA-----IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
           LR         ++V NK DL   RAV + +A+  A    + FIE S     NV+E    I
Sbjct: 103 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
Query: 114 LNQI 117
           L +I
Sbjct: 163 LTEI 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 3   QSLQGHSGKVRAI---IWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVI 51
           Q   G SGK   +   +W+    E++  LT++   D  G ++++ L  + S+  V   + 
Sbjct: 58  QGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 117
Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           +L    Y      +++ NK DL   R V+ + A+ LA  + + + E S     NV++ + 
Sbjct: 118 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 112 GILNQI--RLKRSLVQT 126
            +L+ I  R+++ + +T
Sbjct: 178 TLLDLIMKRMEKCVEKT 194

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 48  QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
           + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V ++E S     NVD
Sbjct: 99  EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155
Query: 108 ELLVGILNQIRLK 120
           ++   ++ +IR +
Sbjct: 156 KVFFDLMREIRAR 168

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 7   GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
           G + KV   +W+    E++  LT++   D  G ++++ L  + S+  V   + +L    Y
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
                 +++ NK DL   R V+ + A+ LA  + + + E S     NV++ +  +L+ I 
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 118 -RLKRSLVQT 126
            R+++ + +T
Sbjct: 199 KRMEQCVEKT 208

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS-YHRVEQDVIRLH 54
           ++++  + K++A IW+    E+Y  +TS+      G +IV+ + K S Y      +  L 
Sbjct: 50  RTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR 109
Query: 55  EEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD----ELL 110
           E         +I  NK DLA  RAV + +AKN A   ++ F E S     NVD    EL+
Sbjct: 110 ENADDNVAVGLI-GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168
Query: 111 VGILNQI 117
           V I   +
Sbjct: 169 VAIFQMV 175

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 7   GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
           G + KV   +W+    E++  LT++   D  G ++++ L  + S+  V   + +L    Y
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
                 +++ NK DL   R V+ + A+ LA  + + + E S     NV++ +  +L+ I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 118 -RLKRSLVQT 126
            R+++ + +T
Sbjct: 185 KRMEKCVEKT 194

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 117 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 116 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR
Sbjct: 128 PMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK DL   R V  ++A++ A  + V+++E S     NVD++   ++ +IR K+
Sbjct: 115 PLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 173

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS-YHRVEQDVIRLH 54
           ++L+    +++A IW+    E+Y  +TS+      G +IV+ + K S Y      +  L 
Sbjct: 53  RTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112
Query: 55  EEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114
           E         +I  NK DLA  RAV ++++K  A   ++ F E S     NVD+    ++
Sbjct: 113 ENADDNVAVGLI-GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
Query: 115 NQIRLKRSLVQTGGAQAAAPWKSN 138
           N I  K S  Q     ++A   +N
Sbjct: 172 NTIYQKVSKHQMDLGDSSANGNAN 195

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P I++ NK DL   R V+ ++ + LA   KV ++E S  I  NVD+    ++  IR
Sbjct: 112 PMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK DL   R V  ++A++ A  + V+++E S     NVD++   ++ +IR K+
Sbjct: 111 PLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 169

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR
Sbjct: 111 PMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V N+ DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 69  RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 126
Query: 59  LRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
           LR         ++V NK DL   RAV + +A+  A    + FIE S     NV+     I
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 114 LNQI 117
           L +I
Sbjct: 187 LTEI 190

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 69  RSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 126
Query: 59  LRTRPA-----IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
           LR         ++V NK DL   RAV + +A+  A    + FIE S     NV+     I
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 114 LNQI 117
           L +I
Sbjct: 187 LTEI 190

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 3   QSLQGHSGKVRAI---IWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVI 51
           Q   G SGK   +   +W+    E++  LT++   D  G ++ + L  + S+  V     
Sbjct: 58  QGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXS 117
Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           +L    Y      +++ NK DL   R V+ + A+ LA  + + + E S     NV++ + 
Sbjct: 118 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 112 GILNQI 117
            +L+ I
Sbjct: 178 TLLDLI 183

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 2   NQSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEG 57
            +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E 
Sbjct: 59  TRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 117
Query: 58  YLRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVG 112
            LR         ++V NK DL   RAV + +A+  A    + FIE S     NV+     
Sbjct: 118 -LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 176
Query: 113 ILNQI 117
           IL +I
Sbjct: 177 ILTEI 181

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 7   GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
           G + KV   +W+    E++  LT++   D  G ++ + L  + S+  V     +L    Y
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
                 +++ NK DL   R V+ + A+ LA  + + + E S     NV++ +  +L+ I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 9   SGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
           +  V+A IW+    E+Y  +TS+   G +   +++  + H+    V R  +E Y      
Sbjct: 71  TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130
Query: 65  IIV---ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           I+V    NK DL++AR V +++A+  A +  + F+E S     NV+     +L +I  K 
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
Query: 122 S 122
           S
Sbjct: 191 S 191

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA AR V S+ A++LA S+ + +IE S      V++    ++ + R
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 9   SGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
           +  V+A IW+    E+Y  +TS+   G +   +++  + H+    V R  +E Y      
Sbjct: 56  TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 115
Query: 65  IIV---ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           I+V    NK DL++AR V +++A+  A +  + F+E S     NV+     +L +I  K 
Sbjct: 116 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
Query: 122 S 122
           S
Sbjct: 176 S 176

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA  R V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 48  RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 105
Query: 59  LRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
           LR         ++V NK DL   RAV + +A+  A    + FIE S     NV+     I
Sbjct: 106 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
Query: 114 LNQI 117
           L +I
Sbjct: 166 LTEI 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 74  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 72  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 131
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F+E S     NV+E+ + I  ++
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 12  VRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTRP 63
           V+  IW+    E++  +TSS      G+IIV+ +  + S+  V+Q +  +     +    
Sbjct: 58  VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVN 116
Query: 64  AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
            ++V NK DL   R V+S + + LA S  +KFIE S    +NV++    +  +I+
Sbjct: 117 KLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 51  RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 110
Query: 59  LRTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
                 I+   V NK DL   RAV + +A+  A    + FIE S     NV+     IL 
Sbjct: 111 DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
Query: 116 QI 117
           +I
Sbjct: 171 EI 172

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 7   GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
           G   ++   +W+    E++  LT++   D  G ++++ L  + S+  V   + +L    Y
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
                 ++  NK DL   RAV  ++A+ LA  + + + E S     N+   +  +L+ I 
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 118 -RLKRSL 123
            R++RS+
Sbjct: 185 KRMERSV 191

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
           +S+Q     ++A IW+    E+Y  +TS+   G +   ++Y  + H   ++V R  +E  
Sbjct: 45  RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
Query: 59  LRTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
                 I+   V NK DL   RAV + +A+  A    + FIE S     NV+     IL 
Sbjct: 105 DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164
Query: 116 QI 117
           +I
Sbjct: 165 EI 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 41  PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
           P Y+R  Q  I ++    EE + R +           P I++A   NK DLA  RAV  Q
Sbjct: 74  PXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 83  DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
           +A++ A    + F E S     NV+E+   I  ++
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK DL   R V ++ A  LA S+ + FIE S      V++    ++ +IR  R
Sbjct: 128 PMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	8e-18
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-17
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-17
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-16
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-14
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-14
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-14
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-13
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-13
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-13
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-13
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-13
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-12
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-12
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-11
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-11
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-10
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-10
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-10
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-10
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-10
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-10
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-10
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-10
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-10
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-10
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	9e-10
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-09
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-09
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-09
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-09
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-09
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-09
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-09
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-09
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-09
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-09
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-09
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-08
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-08
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-08
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-08
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-08
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-08
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-08
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	7e-08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-07
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-07
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-07
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-07
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-06
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-05
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-05
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-05
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-05
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	6e-04
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	8e-04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	8e-04

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 48  QDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102
           +    L  +   R R     P I+V NK DL R R VS  + +  A  F  KFIE S  +
Sbjct: 128 EKASELRIQ-LRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186

Query: 103 HHNVDELLVGILNQIRLKRS 122
            HNV EL  GI+ Q+RL+R 
Sbjct: 187 QHNVKELFEGIVRQVRLRRD 206

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 76.4 bits (189), Expect = 1e-17
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 22/127 (17%)

Query: 11  KVRAIIWN----EQYEKLTSSDE-----TGLIIVWMLY----KPSYHRVE---QDVIRLH 54
               ++ +    E+ +K  S +      +  +IV   Y    + S+         + R H
Sbjct: 51  DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIV---YSIADRGSFESASELRIQLRRTH 107

Query: 55  EEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114
           +  ++   P I+V NK DLAR R VS ++ +  A  F  KFIE S  + HNV EL  G++
Sbjct: 108 QADHV---PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

Query: 115 NQIRLKR 121
            Q+RL+R
Sbjct: 165 RQLRLRR 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P I+V NK DL R+R VS  + +  A  F  KFIE S  +HHNV  L  G++ QIRL+R
Sbjct: 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 166

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P I+V NK DLAR+R VS ++ ++LA +   K IE S  +HHN  EL  G + QIRL+R
Sbjct: 111 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 169

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P I+V NK DLAR+R VS ++ ++LA +   K IE S  +HHN  EL  G + QIRL+R 
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRG 191

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 31  GLIIVWMLY----KPSYHRVEQ--DVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA 84
             ++V   Y    + S+       +++ LH +   R+ PA+++ NK+D+A+ R V+  + 
Sbjct: 94  AFLVV---YSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150

Query: 85  KNLAASFKVKFIEVSVGIH-HNVDELLVGILNQIR 118
             LA  F   F EVS  +   +V  +    + + R
Sbjct: 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 48  QDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102
           +    L  +   R R     P I+V NK DL R R VS  + +  A  F  KFIE S  +
Sbjct: 97  EKASELRIQ-LRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAV 155

Query: 103 HHNVDELLVGILNQIRLKRSLVQTGGAQAA 132
            HNV EL  GI+ Q+RL+R   +    + A
Sbjct: 156 QHNVKELFEGIVRQVRLRRDSKEKNERRLA 185

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 66.8 bits (164), Expect = 6e-14
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK D + +R V S +A+ LA ++K  F+E S  ++HNV EL   +LN  + + 
Sbjct: 111 PIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV-GIHHNVDELLVGILNQIRLKR 121
             I+V NK DL  +R VS+++ + LA      F E S      N+ E+   +  ++R +R
Sbjct: 134 TLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P ++V NK DL   R VS ++AKN A  + V ++E S     NVD++   ++ +IR  R 
Sbjct: 121 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR-ARK 179

Query: 123 LVQTGGAQAAAPWKSNTTLVRASAVIV 149
           +  +         KS    +R    I+
Sbjct: 180 MEDSKEKNGKKKRKSLAKRIRERCCIL 206

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 65.2 bits (160), Expect = 2e-13
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
           P ++V NK DL   R VS ++AKN A  + V ++E S     NVD++   ++ +IR +
Sbjct: 111 PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK DL   R VS ++AKN A  + V ++E S     NVD++   ++ +IR ++
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P ++V NK D  + R V +++A+ +A  +K  F+E S  +++NV EL   +L     +  
Sbjct: 116 PVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNM 174

Query: 123 LVQTGGAQAAAPWKSN 138
            +   G ++    +++
Sbjct: 175 SLNIDGKRSGKQKRTD 190

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 63.3 bits (155), Expect = 9e-13
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P I+V NK+DL   R VSS + + LA  +   F+E S      VDEL   I+ Q+ 
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P ++V NK DL   R +S ++ K LA S+   F+E S   +    ++   I+ +      
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDG 172

Query: 123 LVQTG 127
               G
Sbjct: 173 ACSQG 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 16  IWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEEGYLRT 61
           I +    E++  +         G ++V   +    + S++ V      ++R+ +      
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLV---FAINDRQSFNEVGKLFTQILRVKDRDDF-- 115

Query: 62  RPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
            P ++V NK DL   R V   +A    AS  V + E S  +  NVDE    ++  +R  +
Sbjct: 116 -PVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 122 S 122
            
Sbjct: 175 E 175

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DL+  R V + + K LA S+   F+E S   +     +   ++ +I 
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV-GIHHNVDELLVGILNQIR 118
           P I+VANK+DL   R V+    K +A  + + +IE S      NVD+    ++  IR
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           P ++V NK DL  +R V ++ A++LA S+ + FIE S      VD+    ++ +IR  + 
Sbjct: 111 PMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169

Query: 123 LVQTGGAQAAAPWKSN 138
            +   G +     K+ 
Sbjct: 170 KMSKDGKKKKKKSKTK 185

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
           P ++V NK DL   R V ++ A  LA S+ + FIE S      V++    ++ +IR  R
Sbjct: 128 PMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 58.7 bits (143), Expect = 5e-11
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V NK DLA  R V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 110 PMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIR 118
           P I+V NK DL   R V  +  +NLA  +    F+E S     NV+E+   ++ QI 
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 21/134 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
            VR  +W+    E++  L  S   D T  ++V   Y      S+ +  + +  +  E   
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVV---YDITNVNSFQQTTKWIDDVRTER-- 118

Query: 60  RTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                +I   V NK DLA  R VS ++ +  A    V FIE S    +NV +L   +   
Sbjct: 119 --GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176

Query: 117 IRLKRSLVQTGGAQ 130
           +    S        
Sbjct: 177 LPGMESTQDRSRED 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
            VR  +W+    E++  L  S   D T  ++V   Y      S+H+  + +  +  E   
Sbjct: 62  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV---YDITNTNSFHQTSKWIDDVRTER-- 116

Query: 60  RTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                +I   V NK DL+  R VS+++ +  A    V FIE S    +NV +L   +   
Sbjct: 117 --GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174

Query: 117 I 117
           +
Sbjct: 175 L 175

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
            V+  IW+    E++  +TSS      G+IIV   Y    + S++ V+    ++ R    
Sbjct: 56  TVKLQIWDTAGQERFRTITSSYYRGSHGIIIV---YDVTDQESFNGVKMWLQEIDRYATS 112

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             L+    ++V NK DL   R V    AK  A + K+ F+E S     NV++  + +  Q
Sbjct: 113 TVLK----LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168

Query: 117 IRLKRSLVQTGGAQAAAPWKSNTTLVRASA 146
           I+   S             K N  L   S 
Sbjct: 169 IKESMSQQNLNETTQKKEDKGNVNLKGQSL 198

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
           +++A IW+    E+Y  +TS+      G +IV   Y      SY        ++    ++
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIV---YDISKSSSYENCNHWLSELRENADD 117

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                    ++ NK DLA  RAV ++++K  A   ++ F E S     NVD+    ++N 
Sbjct: 118 NVAV----GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173

Query: 117 IRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGN 155
           I  K S  Q     ++A   +N         I  +   N
Sbjct: 174 IYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPN 212

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 21/150 (14%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           +++  IW+    E+Y  +T++      G I++   Y    + S++ V+     I+ +  +
Sbjct: 56  RIKLQIWDTAGLERYRTITTAYYRGAMGFILM---YDITNEESFNAVQDWSTQIKTYSWD 112

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   ++V NK D+   R VSS+  + LA     +F E S   + NV +    +++ 
Sbjct: 113 NAQV----LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168

Query: 117 IRLKRSLVQTGGAQAAAPWKSNTTLVRASA 146
           I  K S        A    K    L    A
Sbjct: 169 ICEKMSESLDTADPAVTGAKQGPQLTDQQA 198

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
             + +IW+    E++  L           +IV   Y    + S++ ++   +++     E
Sbjct: 71  LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIV---YDITKQDSFYTLKKWVKELKEHGPE 127

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +      I  NK DL+  R V  +DAK  A S     +E S     N++EL  GI  Q
Sbjct: 128 NIVM----AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183

Query: 117 I 117
           I
Sbjct: 184 I 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V+  IW+    E+Y  L           IIV   +    + S+ R +   Q++      
Sbjct: 60  TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV---FDVTNQASFERAKKWVQELQAQGNP 116

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +      +  NK DL  AR V+++DA+  A    + F+E S     NV E+   I  +
Sbjct: 117 NMVM----ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172

Query: 117 I 117
           +
Sbjct: 173 L 173

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V+  IW+    E+Y  L           I+V   Y    + S+ R +   +++ R    
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV---YDITNEESFARAKNWVKELQRQASP 110

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +      +  NK DLA  RAV  Q+A++ A    + F+E S     NV+E+ + I  +
Sbjct: 111 NIVI----ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

Query: 117 I 117
           +
Sbjct: 167 L 167

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
           +V   IW+    E++  L      D  G I+V   Y    + S+ +V+   +++ ++   
Sbjct: 54  RVNLAIWDTAGQERFHALGPIYYRDSNGAILV---YDITDEDSFQKVKNWVKELRKMLGN 110

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                    IV NKIDL + R VS Q+A++ A S   K    S   +  ++EL + +  +
Sbjct: 111 EICL----CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 166

Query: 117 I 117
           +
Sbjct: 167 M 167

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHEEG 57
            VR ++W+    E+++ +T +        ++V   +    + S+  +    + +      
Sbjct: 53  DVRLMLWDTAGQEEFDAITKAYYRGAQACVLV---FSTTDRESFEAISSWREKVVAEVGD 109

Query: 58  YLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
                   +V NKIDL     + +++A+ LA   K++F   SV    NV E+   +  + 
Sbjct: 110 IPT----ALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

Query: 118 RLK 120
             K
Sbjct: 166 LQK 168

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
             + +IW+    E++  L           IIV   Y    + ++  ++  V  L + G  
Sbjct: 54  LHKFLIWDTAGLERFRALAPMYYRGSAAAIIV---YDITKEETFSTLKNWVRELRQHG-- 108

Query: 60  RTRPAIIVA---NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
              P+I+VA   NK DL   R V  +DAK+ A S    F+E S     N++EL + I  +
Sbjct: 109 --PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 166

Query: 117 I 117
           I
Sbjct: 167 I 167

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHEEG 57
           KV+  IW+    E++  +TS+      G+I+V   Y      S+  V++    I  + + 
Sbjct: 57  KVKLQIWDTAGQERFRTITSTYYRGTHGVIVV---YDVTSAESFVNVKRWLHEINQNCDD 113

Query: 58  YLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
             R    I+V NK D    + V ++DA   A    ++  E S   + NV+E+   I   +
Sbjct: 114 VCR----ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

Query: 118 RLKRS 122
              + 
Sbjct: 170 LRAKK 174

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 16/120 (13%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHEEG 57
            V   IW+        K+         G+++V   Y      S+  +E    V++   E 
Sbjct: 55  NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLV---YDITNYQSFENLEDWYTVVKKVSEE 111

Query: 58  YLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
                   +V NKIDL   R +  +               VS     +V      +  +I
Sbjct: 112 SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 48  QDVIRLHEEGYLRTR-----PAIIVANKIDL--ARARAVSSQDAKNLAASFK-VKFIEVS 99
           Q V           R     P ++V  +  +  A  R +    A+ L+   K   + E  
Sbjct: 102 QTVYNYFLR-LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160

Query: 100 VGIHHNVDELLVGILNQIRLKR 121
                NV+ +   +  ++   R
Sbjct: 161 ATYGLNVERVFQDVAQKVVALR 182

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 23/135 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           +++  IW+    E++  +T++      G+++V   Y    + S+  +      I  H   
Sbjct: 56  RIKLQIWDTAGQERFRTITTAYYRGAMGIMLV---YDITNEKSFDNIRNWIRNIEEHASA 112

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
              +    +I+ NK D+   R VS +  + LA  + +KF+E S   + NV+     +   
Sbjct: 113 DVEK----MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168

Query: 117 I--RLKRSLVQTGGA 129
           I  ++ ++   T   
Sbjct: 169 IKAKMDKNWKATAAG 183

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 14/131 (10%)

Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVI 51
               G + KV   +W+    E++  LT++   D  G +++   +    + S+  V   + 
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLM---FDLTSQQSFLNVRNWMS 131

Query: 52  RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
           +L    Y      +++ NK DL   R V+ + A+ LA  + + + E S     NV++ + 
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191

Query: 112 GILNQIRLKRS 122
            +L+ I  +  
Sbjct: 192 TLLDLIMKRME 202

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           +++  IW+    E+Y  +T++      G +++   Y    + S+  V+     I+ +  +
Sbjct: 70  RIKLQIWDTAGQERYRTITTAYYRGAMGFLLM---YDIANQESFAAVQDWATQIKTYSWD 126

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   I+V NK DL   R V ++D + LA     +F E S   + NV ++   +++ 
Sbjct: 127 NAQV----ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182

Query: 117 IRLKRS 122
           I  K +
Sbjct: 183 ICEKMN 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
            ++  IW+    E++  +TSS      G+I+V   Y    + S++ V+Q   ++ R   E
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVV---YDVTDQESFNNVKQWLQEIDRYASE 120

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
              +    ++V NK DL   + V    AK  A S  + F+E S     NV++  + +  +
Sbjct: 121 NVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176

Query: 117 IRLKRSLVQTGGAQAAA 133
           I+ +     T G    +
Sbjct: 177 IKKRMGPGATAGGAEKS 193

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 15/125 (12%)

Query: 11  KVRAIIW----NEQYEKLTS---SDETGLIIVWMLYKPSYHRVEQ--DVIRLHEEGYLRT 61
           +     W     E          +  +  +++      +          I  +       
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR--TDSNKHYWLRHIEKYGGK---- 150

Query: 62  RPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
            P I+V NKID   +  +  +       + + +F  +S      V+ +   + + +    
Sbjct: 151 SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210

Query: 122 SLVQT 126
           S+  T
Sbjct: 211 SIYGT 215

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 21/124 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
            ++  IW+    E++  +TSS      G+I+V   Y    + S++ V+Q    I  +  E
Sbjct: 81  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVV---YDVTDQESFNNVKQWLQEIDRYASE 137

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
              +    ++V NK DL   + V    AK  A S  + F+E S     NV++  + +  +
Sbjct: 138 NVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 193

Query: 117 IRLK 120
           I+ +
Sbjct: 194 IKKR 197

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 23/147 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
            ++A IW+    E+Y ++TS+      G ++V   Y      +Y  VE+   ++    + 
Sbjct: 53  TIKAQIWDTAGQERYRRITSAYYRGAVGALLV---YDIAKHLTYENVERWLKELRDHADS 109

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     ++V NK DL   RAV + +A+  A    + FIE S     NV+E    IL +
Sbjct: 110 NIVI----MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165

Query: 117 I--RLKRSLVQTGGAQAAAPWKSNTTL 141
           I   + +  +    A   +P  +   +
Sbjct: 166 IYRIVSQKQIADRAAHDESPGNNVVDI 192

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           KV+  +W+    E++  +T +   D   L+++   Y    K S+  ++     I  + + 
Sbjct: 59  KVKLQMWDTAGQERFRSVTHAYYRDAHALLLL---YDVTNKASFDNIQAWLTEIHEYAQH 115

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   +++ NK+D A  R V  +D + LA  + + F+E S     NVD     I  +
Sbjct: 116 DVAL----MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171

Query: 117 IRLKRS 122
           ++ +  
Sbjct: 172 LKRRSM 177

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
            ++A IW+    E+Y  +TS+      G ++V   Y      +Y  VE+   ++    + 
Sbjct: 77  TIKAQIWDTAGLERYRAITSAYYRGAVGALLV---YDIAKHLTYENVERWLKELRDHADS 133

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     ++V NK DL   RAV + +A+  A    + FIE S     NV+     IL +
Sbjct: 134 NIVI----MLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189

Query: 117 I 117
           I
Sbjct: 190 I 190

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
           ++   +W+    E++  LT++   D  G +++   +    + S+  V   + +L    Y 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLL---FDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 60  RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI-- 117
                ++  NK DL   RAV  ++A+ LA  + + + E S     N+   +  +L+ I  
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

Query: 118 RLKRSL 123
           R++RS+
Sbjct: 186 RMERSV 191

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 52.6 bits (127), Expect = 9e-09
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
            V+A IW+    E+Y  +TS+      G ++V   +      +Y  VE+   ++    E 
Sbjct: 73  AVKAQIWDTAGLERYRAITSAYYRGAVGALLV---FDLTKHQTYAVVERWLKELYDHAEA 129

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     ++V NK DL++AR V +++A+  A +  + F+E S     NV+     +L +
Sbjct: 130 TIVV----MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185

Query: 117 IRLKRS 122
           I  K S
Sbjct: 186 IFAKVS 191

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 21/124 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           +V+  IW+    E+Y  +T++      G I++   Y    + S++ V+     I+ +  +
Sbjct: 71  RVKLQIWDTAGQERYRTITTAYYRGAMGFILM---YDITNEESFNAVQDWATQIKTYSWD 127

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   I+V NK D+   R V ++  + LA      F E S   + +V +    +++ 
Sbjct: 128 NAQV----ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183

Query: 117 IRLK 120
           I  K
Sbjct: 184 ICDK 187

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
           K++  IW+    E++  +T S      G ++V   Y    + +Y+ +     D   L   
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMV---YDITRRSTYNHLSSWLTDARNLTNP 119

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     I++ NK DL   R V+ ++AK  A    + F+E S     NV++  +    +
Sbjct: 120 NTVI----ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175

Query: 117 I 117
           I
Sbjct: 176 I 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V+  IW+    E++  +T S      G ++V   Y    + +Y+ +     D   L   
Sbjct: 73  TVKLQIWDTAGQERFRSVTRSYYRGAAGALLV---YDITSRETYNSLAAWLTDARTLASP 129

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     I+  NK DL   R V+  +A   A   ++ F+E S     NV+E  +     
Sbjct: 130 NIVV----ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185

Query: 117 IRLKRS 122
           I  K  
Sbjct: 186 ILNKID 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           KV+  IW+    E++  +T S       LI+    Y    + S+  + +    I  +   
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILT---YDITCEESFRCLPEWLREIEQYASN 130

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     ++V NKIDLA  R VS Q A+  + +  + ++E S     NV++L + +  +
Sbjct: 131 KVIT----VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACR 186

Query: 117 IRLKRS 122
           +  +  
Sbjct: 187 LISEAR 192

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 21/126 (16%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V+  IW+    E++  +T S      G ++V   Y    + +Y+ +     D   L  +
Sbjct: 58  YVKLQIWDTAGQERFRSVTRSYYRGAAGALLV---YDITSRETYNALTNWLTDARMLASQ 114

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
             +     I+  NK DL   R V+  +A   A   ++ F+E S     NV+E  V    +
Sbjct: 115 NIVI----ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170

Query: 117 IRLKRS 122
           I  K  
Sbjct: 171 ILNKIE 176

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
           +++ NK DL   R V  ++ +  A    + F+E S     NV+E  +    +I  K  
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 24/130 (18%)

Query: 2   NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDV 50
           + +   +   ++  IW+    E+Y  +        T  I+V   +      +  R +   
Sbjct: 83  HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV---FDISNSNTLDRAKT-- 137

Query: 51  IRLHEEGYLRTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
             +++   L+     I   VANKID  +   V   + +  A    + FI+ S     N+ 
Sbjct: 138 -WVNQ---LKISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIK 192

Query: 108 ELLVGILNQI 117
            +   +  +I
Sbjct: 193 NIFYMLAEEI 202

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 22/124 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           KV+  IW+    E++  +T++      G+I+V   Y    + ++  ++Q    +  H  +
Sbjct: 51  KVKLQIWDTAGQERFRTITTAYYRGAMGIILV---YDITDERTFTNIKQWFKTVNEHAND 107

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   ++V NK D+   R V++   + LA    + FIE S     NV+E+   +   
Sbjct: 108 EAQL----LLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162

Query: 117 IRLK 120
           I+ K
Sbjct: 163 IQEK 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 65  IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS---VGIHHNVDELLVGILNQI 117
           I+V NK DL  A  V +  A+  A +  +   E S      + +V+ + + + +++
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
           K +  IW+    E++  LT S      G+I+V   Y    + ++ +++  +  L      
Sbjct: 63  KAKLAIWDTAGQERFRTLTPSYYRGAQGVILV---YDVTRRDTFVKLDNWLNELETYCTR 119

Query: 60  RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119
                ++V NKID    R V   +    A    + FIE S      V      ++ +I  
Sbjct: 120 NDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178

Query: 120 KRSLVQTG 127
              L ++ 
Sbjct: 179 TPGLWESE 186

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 21/138 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            ++  +W+    E+   L        +G I+    +    + +   +    ++   +   
Sbjct: 60  VIKFNVWDTAGQEKKAVLKDVYYIGASGAILF---FDVTSRITCQNLARWVKEFQAVVGN 116

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                 P ++ ANKID+   + +S +    +      ++ E+S    HN     + +   
Sbjct: 117 EA----PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172

Query: 117 IRLKRSLVQTGGAQAAAP 134
              +  L+          
Sbjct: 173 FTGRPDLIFVSNVNLEPT 190

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 22/125 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ---DVIRLHEE 56
           +V+  IW+    E++  +T S      G I+    Y    + S+  V     DV +    
Sbjct: 77  RVKLQIWDTAGQERFRTITQSYYRSANGAILA---YDITKRSSFLSVPHWIEDVRKYAGS 133

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILN 115
             ++    +++ NK DL+  R VS  +A++LA  + +   IE S     NV+E  + +  
Sbjct: 134 NIVQ----LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

Query: 116 QIRLK 120
           ++ ++
Sbjct: 190 ELIMR 194

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 25/129 (19%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHEEG 57
           +    +W+    E++  +  S      G++++   Y    + S+  + +  D+I      
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLL---YDVTCEKSFLNIREWVDMIEDAAH- 131

Query: 58  YLRTRPAIIVANKIDLARA------RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
              T P ++V NK D+         + V     + LA ++   F E S     N+ E ++
Sbjct: 132 --ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189

Query: 112 GILNQIRLK 120
            +  +++ +
Sbjct: 190 HLAREVKKR 198

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 20/124 (16%)

Query: 11  KVRAIIWN------EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHE 55
            V   ++       + Y++  S         I+V   +      S+   +   ++++   
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILV---FDVSSMESFESCKAWFELLKSAR 126

Query: 56  EGYLRTRPAIIVANKIDLARAR-AVSSQDAKNLAASFKVKFIEVSVGIH-HNVDELLVGI 113
               R   A++VANK DL   R  V    A++ A +  + F +VS      + D   + I
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186

Query: 114 LNQI 117
               
Sbjct: 187 ATTF 190

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           K+R  IW+    E++  +TS+      G+I+V   Y    K ++  + +   +I  +  E
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILV---YDITKKETFDDLPKWMKMIDKYASE 130

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILN 115
                   ++V NK+D    R ++ Q  +  A     ++F E S   + NVDE+ + +++
Sbjct: 131 DAEL----LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186

Query: 116 QIRLK 120
            I  K
Sbjct: 187 DILKK 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           P ++V  K D    R +       L +   ++ +E S   + NVD     ++  I 
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFAL-SKKNLQVVETSARSNVNVDLAFSTLVQLID 254

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 22/138 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLH-EE 56
           KV+  +W+    E++  +T++      G+I+V   Y    + ++  ++Q    +  H  +
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILV---YDVTDERTFTNIKQWFKTVNEHAND 124

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                   ++V NK D+   R V++   + LA    + FIE S     NV+E+   +   
Sbjct: 125 EAQL----LLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179

Query: 117 IRLKRSLVQTGGAQAAAP 134
           I+ K    +  G      
Sbjct: 180 IQEKIDSNKLVGVGNGKE 197

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             +   ++I  +  R V    A+ L A   +  + E       NVD +   +  ++   R
Sbjct: 112 ALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 19/118 (16%)

Query: 16  IWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEEGYLRT 61
           +W+    E+++ L  +        ++V   Y      S+  ++    + +         T
Sbjct: 62  VWDTAGQERFQSLGVAFYRGADCCVLV---YDVTNASSFENIKSWRDEFLVHANVNSPET 118

Query: 62  RPAIIVANKIDLARA-RAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQI 117
            P +I+ NKID   + + VS + A+ LA S   +     S     NVD     I    
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 48  QDVIRLHEE--GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105
           ++ I L EE  G  +  P ++V NKID+A    +  +  +       +  I++S      
Sbjct: 265 EEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTG 322

Query: 106 VDELLVGILNQIR 118
           +D +   I+  +R
Sbjct: 323 IDLVKEEIIKTLR 335

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 11  KVRAIIWN----EQYEKLTS---SDETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTR 62
            V+  IW+    E++  L      +    ++V+ +    S+ +    V  LHE+   +  
Sbjct: 51  TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDI 109

Query: 63  PAIIVANKIDLARA---RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119
              +V NKID  +    R V+ ++ + LA    + F E S     NV+++ +GI  +I L
Sbjct: 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

Query: 120 K 120
           K
Sbjct: 170 K 170

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V   IW+    E++  L +         ++    +      S+  +    ++ I   + 
Sbjct: 55  FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT---FSVDDSQSFQNLSNWKKEFIYYADV 111

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILN 115
               + P +I+ NKID++  R VS+++A+          + E S     NV       + 
Sbjct: 112 KEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170

Query: 116 QI 117
           ++
Sbjct: 171 RV 172

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 17/134 (12%)

Query: 11  KVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVE---QDVIRLHEE 56
            V   IW+    E+++ L  +        ++V   +      ++  ++    + +     
Sbjct: 56  LVTMQIWDTAGQERFQSLGVAFYRGADCCVLV---FDVTAPNTFKTLDSWRDEFLIQASP 112

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                 P +++ NKIDL   +  + +      +   + + E S     NV++    I   
Sbjct: 113 RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

Query: 117 IRLKRSLVQTGGAQ 130
              + + V+     
Sbjct: 173 ALKQETEVELYNEF 186

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/138 (13%), Positives = 50/138 (36%), Gaps = 22/138 (15%)

Query: 10  GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQ--DVIRLHEE 56
           G ++  +W+    E++  L           II+   +    + +Y  V      +    E
Sbjct: 62  GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM---FDVTSRVTYKNVPNWHRDLVRVCE 118

Query: 57  GYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116
                 P ++  NK+D+   +  +   +        +++ ++S   ++N ++  + +  +
Sbjct: 119 NI----PIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 172

Query: 117 IRLKRSLVQTGGAQAAAP 134
           +    +L        A P
Sbjct: 173 LIGDPNLEFVAMPALAPP 190

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLVGI 113
              +  +I  NKID     ++S  +   +          +KF   S      V++  +  
Sbjct: 140 FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199

Query: 114 LNQIRLKR 121
              ++  +
Sbjct: 200 CELLKNDQ 207

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           L  RP IIVANK+D+  A        + L   + V    +S      + ELL  + NQ+ 
Sbjct: 272 LTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPV--FPISAVTREGLRELLFEVANQLE 329

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 59  LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
           L  RP+++  NK+DL    AV  +   +  A   +  + VS      +  L   +   +R
Sbjct: 267 LLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALVR 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.83
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.83
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.82
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.82
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.82
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.81
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.81
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.8
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.8
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.8
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.8
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.8
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.8
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.8
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.8
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.79
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.79
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.79
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.79
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.79
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.79
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.78
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.78
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.78
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.78
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.78
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.78
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.78
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.78
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.78
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.78
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.78
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.77
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.77
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.77
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.77
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.77
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.77
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.77
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.77
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.76
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.76
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.76
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.76
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.76
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.76
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.75
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.75
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.75
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.75
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.75
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.75
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.75
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.74
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.74
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.73
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.73
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.73
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.73
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.72
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.72
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.72
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.71
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.71
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.7
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.7
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.7
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.69
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.69
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.68
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.68
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.68
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.66
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.65
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.65
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.65
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.45
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.64
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.63
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.61
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.6
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.6
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.59
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.57
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.56
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.56
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.56
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.52
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.51
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.5
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.49
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.49
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.45
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.44
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.44
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.39
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.38
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.37
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.33
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.31
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.28
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.27
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.25
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.25
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.25
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.23
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.21
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.18
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.17
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.15
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.13
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.09
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.05
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.05
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.02
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.01
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.0
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.99
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.97
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.82
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.78
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.77
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.77
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.77
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.76
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.76
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.75
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.73
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.72
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.69
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.65
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.64
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.63
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.63
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.61
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.6
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.6
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.58
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.57
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.5
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.4
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.33
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.32
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.29
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.27
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.24
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.23
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.22
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.22
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.21
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.2
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.16
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.13
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.1
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.05
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.0
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.98
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.94
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.91
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.86
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.66
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.5
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.43
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.31
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.21
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.17
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.1
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.85
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.74
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.45
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.35
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	95.72
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.58
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.89
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	94.89
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.65
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	94.56
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.55
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.26
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.24
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	94.09
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.91
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.83
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.78
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	93.72
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.58
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.53
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.46
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	93.36
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.29
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.28
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.27
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.26
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.17
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	93.16
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.1
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.03
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.88
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.83
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.77
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.77
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.73
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	92.47
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.36
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	92.28
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.1
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.02
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	91.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.91
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	91.89
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	91.8
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.77
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.73
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	91.6
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.56
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	91.49
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.42
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	91.42
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	90.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	90.86
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.74
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	90.65
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	90.56
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.49
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	90.37
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.26
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	90.0
2pm7_B	297	Protein transport protein SEC13, protein transport	89.99
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.98
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	89.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	89.85
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	89.62
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	89.56
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	89.5
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	89.47
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	89.46
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	89.43
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	89.38
2pm7_B	297	Protein transport protein SEC13, protein transport	89.26
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	89.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	88.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	88.66
3jro_A	753	Fusion protein of protein transport protein SEC13	88.28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	87.98
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	87.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	87.71
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	87.69
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	87.38
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	87.13
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	87.13
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.79
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	86.76
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	86.74
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	86.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	85.63
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	85.56
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	85.51
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	85.3
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	85.24
3jro_A	753	Fusion protein of protein transport protein SEC13	84.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	84.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	84.18
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	84.14
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	84.01
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	83.26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	83.14
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	82.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	82.62
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	82.37
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	80.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	80.79
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	80.7
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	80.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	80.41
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	80.03

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.91  E-value=4.6e-24  Score=177.65  Aligned_cols=119  Identities=23%  Similarity=0.347  Sum_probs=108.0

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..|+++|||    |+|+.+++.   +++++|+|||+ +++||+.+..|+..+..+.. .++|++|||||+||
T Consensus        52 ~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl  130 (216)
T 4dkx_A           52 SKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL  130 (216)
T ss_dssp             EEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTC
T ss_pred             EEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccch
Confidence            35778899999999999    999999877   99999999999 99999999999999987753 68999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .+.++++.+++++++++++++|+||||++|.||+++|..|++.+....
T Consensus       131 ~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred             HhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999998886543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.83  E-value=8.3e-20  Score=143.14  Aligned_cols=118  Identities=30%  Similarity=0.483  Sum_probs=97.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  119 (166)
T 3q72_A           40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  119 (166)
T ss_dssp             EEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred             EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence            4677899999999999    778777766   99999999999 999999999999999876545789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..+.+..+++..++...+++++++||++|.|++++|..|++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.83  E-value=1e-19  Score=143.02  Aligned_cols=118  Identities=31%  Similarity=0.523  Sum_probs=101.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcc-cccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+.+||    ++|+. ++..   ++|++++|||+ ++++|+.+..|+.++.......+.|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  121 (169)
T 3q85_A           42 RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL  121 (169)
T ss_dssp             EEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred             EEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcch
Confidence            5677899999999999    66665 4443   89999999999 99999999999999988765568999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ...+.+..+++..+++..+++|+++||++|.|++++|..+++.+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            98889999999999999999999999999999999999999988654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.83  E-value=8.4e-20  Score=148.58  Aligned_cols=119  Identities=31%  Similarity=0.528  Sum_probs=104.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcc-cccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+. ++..   ++|++|+|||+ ++.+|+.+..|+.++.......+.|++|||||+||
T Consensus        63 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  142 (195)
T 3cbq_A           63 RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL  142 (195)
T ss_dssp             EEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred             EEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence            4677899999999999    55554 4443   89999999999 99999999999999987764468999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..+++..+++..+++|+++||++|.|++++|..|++.+...+
T Consensus       143 ~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred             cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence            988888889999999999999999999999999999999999886543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=4.3e-20  Score=153.00  Aligned_cols=119  Identities=32%  Similarity=0.496  Sum_probs=102.0

Q ss_pred             cEEEECCeEEEEEEEe----CC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+++..+.+.+||    +. ++.+...   .++++|+|||+ ++.+|+.+..|...+.+.....++|++|||||+||
T Consensus        78 ~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL  157 (211)
T 2g3y_A           78 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  157 (211)
T ss_dssp             EEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred             EEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence            5678899999999999    33 3444433   89999999999 99999999999998876433357999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..++++.++..++++|++|||++|.||+++|..|++.+...+
T Consensus       158 ~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          158 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             hcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            888888888888899999999999999999999999999999886543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.82  E-value=1.5e-19  Score=144.17  Aligned_cols=120  Identities=21%  Similarity=0.444  Sum_probs=97.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus        48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  126 (183)
T 2fu5_C           48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVN  126 (183)
T ss_dssp             EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CC
T ss_pred             EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCC
Confidence            4567889999999999    788887765   99999999999 9999999999999998764 2679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|++.+.+....
T Consensus       127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            8888888999999999999999999999999999999999999876543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.82  E-value=1.9e-19  Score=143.34  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=105.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.+.....+.|++||+||+|+.
T Consensus        45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  124 (181)
T 3t5g_A           45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH  124 (181)
T ss_dssp             EEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred             EEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence            4677889999999999    788877765   89999999999 999999999999999877655689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..+++..+++..+++|+++||++|.|++++|..|++.+....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999987654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.82  E-value=2.1e-19  Score=141.83  Aligned_cols=120  Identities=31%  Similarity=0.479  Sum_probs=100.5

Q ss_pred             cEEEECCeEEEEEEEe----CC--CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          3 QSLQGHSGKVRAIIWN----EQ--YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~--~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      +.+.+++..+.+++||    ++  ++.+...   ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|
T Consensus        43 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D  122 (175)
T 2nzj_A           43 RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD  122 (175)
T ss_dssp             EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred             EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence            5678889999999999    44  4444433   89999999999 9999999999999998764346899999999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +...+++..++++.++...+++++++||++|.|++++|..|++.+...+.
T Consensus       123 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             CTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             hccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            99888888888999999999999999999999999999999999876543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.81  E-value=5.4e-19  Score=143.41  Aligned_cols=119  Identities=32%  Similarity=0.497  Sum_probs=102.0

Q ss_pred             cEEEECCeEEEEEEEe----CC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+++..+.+.+||    +. ++.+...   .+|++++|||+ ++.||+.+..|...+.+.....+.|++||+||+||
T Consensus        47 ~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  126 (192)
T 2cjw_A           47 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  126 (192)
T ss_dssp             EEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred             EEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence            5678899999999999    33 4555554   79999999999 99999999999998877643467999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..+++..++..++++|++|||++|.||+++|..+++.+....
T Consensus       127 ~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          127 VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            887888888888899999999999999999999999999999886544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.81  E-value=3e-19  Score=143.89  Aligned_cols=117  Identities=15%  Similarity=0.245  Sum_probs=102.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--C
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--R   75 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~   75 (238)
                      +++.+++..+.++|||    ++|+  ...++|++++|||+ ++.+|+.+..|+.++..+....+.|++|||||+||.  .
T Consensus        58 ~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (184)
T 3ihw_A           58 KEIVVDGQSYLLLIRDEGGPPELQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN  135 (184)
T ss_dssp             EEEEETTEEEEEEEEECSSSCCHH--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred             EEEEECCEEEEEEEEECCCChhhh--eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            5788999999999999    6665  12289999999999 999999999999999886544689999999999994  5


Q ss_pred             cccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         76 ARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .+.+..+++..+++..+ ++|++|||++|.|++++|..|++.+.+.+
T Consensus       136 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          136 PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            67888999999999997 89999999999999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.80  E-value=4.5e-19  Score=141.42  Aligned_cols=117  Identities=23%  Similarity=0.350  Sum_probs=106.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus        57 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  136 (183)
T 3kkq_A           57 KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM  136 (183)
T ss_dssp             EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred             EEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence            4567889999999999    778877765   89999999999 999999999999999876555789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVG-IHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~-t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..+++..+++.++++|+++||+ ++.|++++|..|++.+.+
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          137 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            888999999999999999999999999 999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.80  E-value=4e-19  Score=145.00  Aligned_cols=118  Identities=23%  Similarity=0.407  Sum_probs=106.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.++. ..+.|++||+||+|+.
T Consensus        69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~  147 (201)
T 2hup_A           69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLS  147 (201)
T ss_dssp             EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccc
Confidence            4677888899999999    778777655   99999999999 8999999999999998765 3679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..++++++++..++ +++++||++|.|++++|..|++.+.+..
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8888889999999999999 9999999999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.80  E-value=1e-18  Score=138.41  Aligned_cols=120  Identities=22%  Similarity=0.339  Sum_probs=106.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus        48 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (181)
T 2fn4_A           48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE  127 (181)
T ss_dssp             EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            4567888899999999    778877765   89999999999 999999999999998665545789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..+++..++...+++++++||++|.|++++|..|++.+.+...
T Consensus       128 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            888888889999999999999999999999999999999999876553

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=140.73  Aligned_cols=120  Identities=23%  Similarity=0.417  Sum_probs=107.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+.. .+.|++||+||+|+.
T Consensus        56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~  134 (196)
T 3tkl_A           56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLT  134 (196)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCT
T ss_pred             EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccc
Confidence            4567888999999999    778777765   99999999999 99999999999999987752 689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+....
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            8888999999999999999999999999999999999999999876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=138.42  Aligned_cols=119  Identities=23%  Similarity=0.370  Sum_probs=107.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+....  .+.|+++|+||+|+.
T Consensus        49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~  126 (181)
T 3tw8_B           49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDP  126 (181)
T ss_dssp             EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCc
Confidence            4567889999999999    778777765   89999999999 9999999999999998765  689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..++...+++++++||++|.|++++|..|.+.+.+.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            8888888999999999999999999999999999999999999876644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.80  E-value=3.5e-19  Score=146.95  Aligned_cols=118  Identities=12%  Similarity=0.207  Sum_probs=102.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+. +..|+..+....  .+.|++|||||+||
T Consensus        66 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  143 (214)
T 3q3j_B           66 ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDL  143 (214)
T ss_dssp             EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            4567788899999999    788888876   99999999999 9999999 699999998875  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHHHhhhc
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQIRLKRS  122 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l~~~~~  122 (238)
                      ...            +.+..+++..+++..++ +|++|||++|.| |+++|..|++.+.....
T Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            763            67889999999999999 999999999998 99999999998876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.80  E-value=1.1e-18  Score=140.66  Aligned_cols=118  Identities=19%  Similarity=0.360  Sum_probs=106.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|++||+||+|+.
T Consensus        61 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A           61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC
Confidence            4577888999999999    788887765   99999999999 9999999999999998764 3689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..++++.+++..+++++++||+++.|++++|..|++.+.+..
T Consensus       140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999999999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=6.3e-19  Score=144.36  Aligned_cols=118  Identities=23%  Similarity=0.410  Sum_probs=105.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.... ..+.|++||+||+|+.
T Consensus        66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~  144 (201)
T 2ew1_A           66 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLA  144 (201)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence            4677889999999999    778776655   99999999999 9999999999999998765 3678999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+++..++++.+++..+++|+++||++|.|++++|..|++.+.+..
T Consensus       145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999999999999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.79  E-value=4.1e-19  Score=143.18  Aligned_cols=117  Identities=19%  Similarity=0.251  Sum_probs=101.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.+...  ++|++|+|||+ ++.+|+.+..|+.++.++..  ..+.|++||+||+|+
T Consensus        60 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  139 (187)
T 3c5c_A           60 SEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM  139 (187)
T ss_dssp             EEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence            4567889999999999    778776333  89999999999 99999999999999987631  258999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEcc-CCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSV-GIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA-~t~~gv~elf~~i~~~l~~  119 (238)
                      ...+.+..+++.++++..+++|+++|| ++|.|++++|..|++.+.+
T Consensus       140 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence            888889999999999999999999999 8999999999999988753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=139.87  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+..+.  .+.|++||+||+|+
T Consensus        59 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl  136 (201)
T 2q3h_A           59 AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDL  136 (201)
T ss_dssp             EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence            4567889999999999    888888766   99999999999 999999997 7999998865  58999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..            .+.+..+++..+++..++ +|++|||++|.|++++|..|++.+.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             hhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            75            356778889999998887 99999999999999999999999876653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.79  E-value=1.3e-18  Score=136.66  Aligned_cols=116  Identities=28%  Similarity=0.384  Sum_probs=98.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus        46 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  124 (170)
T 1z08_A           46 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLE  124 (170)
T ss_dssp             EEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence            4567788899999999    777777765   99999999999 9999999999999987754 2579999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            888888889999999999999999999999999999999988753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.79  E-value=5.2e-19  Score=143.88  Aligned_cols=120  Identities=22%  Similarity=0.321  Sum_probs=100.1

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++..+.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+..
T Consensus        64 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           64 IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP  143 (201)
T ss_dssp             EEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred             EEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence            445567789999999    788887766   99999999999 9999999999999998765456899999999999998


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      .+.+..+++..+++..+++|+++||++|.|++++|..|++.+.+....
T Consensus       144 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred             ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            889999999999999999999999999999999999999998776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.79  E-value=1.5e-18  Score=138.09  Aligned_cols=119  Identities=24%  Similarity=0.375  Sum_probs=107.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.......+.|+++|+||+|+.
T Consensus        57 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  136 (187)
T 2a9k_A           57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  136 (187)
T ss_dssp             EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            4567788899999999    777777665   89999999999 999999999999999887755689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..+++..+++..+++++++||+++.|++++|..|++.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            88888888999999999999999999999999999999999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.79  E-value=1.1e-18  Score=136.25  Aligned_cols=117  Identities=24%  Similarity=0.365  Sum_probs=103.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.......+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  122 (168)
T 1u8z_A           43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  122 (168)
T ss_dssp             EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence            3567788899999999    777777665   89999999999 999999999999999887755689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+++..+++..+++..+++++++||++|.|++++|..|++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            888888889999999999999999999999999999999988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.79  E-value=1.1e-18  Score=136.47  Aligned_cols=115  Identities=22%  Similarity=0.379  Sum_probs=102.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus        42 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence            3456778899999999    778877765   89999999999 999999999999999877545789999999999999


Q ss_pred             CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+++..+++.. +++++++||++|.|++++|..|++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            88888888999999987 79999999999999999999999876

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=2.4e-18  Score=136.48  Aligned_cols=116  Identities=24%  Similarity=0.459  Sum_probs=97.8

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus        52 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~  130 (180)
T 2g6b_A           52 VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAH  130 (180)
T ss_dssp             EEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTS
T ss_pred             EEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCc
Confidence            457788899999999    778877765   99999999999 99999999999999987653 6899999999999998


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .+.+..+++..+++..+++++++||+++.|++++|..|.+.+.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            888888899999999999999999999999999999999988654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.78  E-value=3.6e-18  Score=137.31  Aligned_cols=117  Identities=23%  Similarity=0.461  Sum_probs=104.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus        62 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  140 (189)
T 2gf9_A           62 KTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLE  140 (189)
T ss_dssp             EEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc
Confidence            4566788899999999    788887765   99999999999 9999999999999998764 3689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..+.+..++++++++..+++++++||++|.|++++|..|++.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999999999988754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.78  E-value=4.5e-18  Score=138.57  Aligned_cols=120  Identities=28%  Similarity=0.390  Sum_probs=107.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus        48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  126 (206)
T 2bcg_Y           48 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLK  126 (206)
T ss_dssp             EEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence            4577889999999999    788887765   99999999999 9999999999999998765 3679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|++.+.+....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ  175 (206)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            8888888899999999999999999999999999999999999876543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.78  E-value=1.9e-18  Score=139.52  Aligned_cols=117  Identities=16%  Similarity=0.321  Sum_probs=104.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+ ..|+..+....  .+.|++||+||+|+
T Consensus        62 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl  139 (194)
T 3reg_A           62 HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL  139 (194)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            4567889999999999    788887765   99999999999 99999997 78999988765  68999999999999


Q ss_pred             CCc--ccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARA--RAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~--~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...  +.+..+++..+++..+++ |+++||++|.|++++|..|++.+...+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            753  778889999999999988 999999999999999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=140.11  Aligned_cols=120  Identities=23%  Similarity=0.368  Sum_probs=107.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.......+.|++||+||+|+.
T Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (206)
T 2bov_A           53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  132 (206)
T ss_dssp             EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence            4567788899999999    777777655   89999999999 999999999999999887655689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+++..+++..+++..+++++++||++|.|++++|..|++.+.+.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  180 (206)
T 2bov_A          133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM  180 (206)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence            888888889999999999999999999999999999999999987643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.78  E-value=2e-18  Score=137.78  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=106.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..... .+.|++||+||+|+.
T Consensus        50 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~  128 (186)
T 2bme_A           50 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLD  128 (186)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccc
Confidence            4567788889999999    777776655   89999999999 99999999999999887643 689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..+++.+.+....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            8788888899999999999999999999999999999999998876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=2.5e-18  Score=138.64  Aligned_cols=114  Identities=17%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+.++.  .+.|++||+||+|+
T Consensus        57 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  134 (194)
T 2atx_A           57 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDL  134 (194)
T ss_dssp             EEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTS
T ss_pred             EEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            4567788899999999    788887765   89999999999 999999997 8999998865  58999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...            +.+..+++..+++..++ +|+++||++|.|++++|..|++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            754            46788899999999887 8999999999999999999998775

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=6.9e-19  Score=141.92  Aligned_cols=118  Identities=22%  Similarity=0.415  Sum_probs=106.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus        63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A           63 KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDME  141 (191)
T ss_dssp             EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence            4566777889999999    788877765   99999999999 9999999999999998765 3689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999999999887654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.78  E-value=1.9e-18  Score=136.89  Aligned_cols=118  Identities=18%  Similarity=0.189  Sum_probs=102.0

Q ss_pred             cEEEECC-eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCC-EEEEEEec
Q psy14042          3 QSLQGHS-GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRP-AIIVANKI   71 (238)
Q Consensus         3 k~i~~~~-~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~p-iilVgNK~   71 (238)
                      +.+.+++ ..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+... ...| ++||+||+
T Consensus        46 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~  125 (178)
T 2hxs_A           46 RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI  125 (178)
T ss_dssp             EEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred             EEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence            4566766 689999999    788877765   99999999999 999999999999998775321 2455 89999999


Q ss_pred             cCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         72 DLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      |+...+.+..+++..+++..+++++++||++|.|++++|..|++.+.+.
T Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             GGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            9988888888899999999999999999999999999999999888654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.7e-18  Score=142.09  Aligned_cols=120  Identities=29%  Similarity=0.430  Sum_probs=103.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus        53 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~  131 (223)
T 3cpj_B           53 RTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLA  131 (223)
T ss_dssp             EEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGG
T ss_pred             EEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence            4577888899999999    888888766   99999999999 9999999999999998764 3678999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++|+++||+++.|++++|..|++.+.+....
T Consensus       132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC--
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            8888888899999999999999999999999999999999998765543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.78  E-value=3.9e-18  Score=136.09  Aligned_cols=121  Identities=21%  Similarity=0.383  Sum_probs=104.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP  122 (189)
T ss_dssp             EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred             EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence            4567889999999999    778887766   89999999999 999999999999999887656789999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                       .+.+..+++..+++..+++++++||++|.|++++|..|++.+...+...
T Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM  171 (189)
T ss_dssp             -SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence             4556778899999999999999999999999999999999998776543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.78  E-value=1.4e-18  Score=142.19  Aligned_cols=118  Identities=19%  Similarity=0.331  Sum_probs=101.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+..+.  .+.|++||+||+||
T Consensus        48 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  125 (212)
T 2j0v_A           48 ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDL  125 (212)
T ss_dssp             EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHH
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHh
Confidence            4567788899999999    888888765   99999999999 999999996 8999998875  58999999999999


Q ss_pred             CCccc--------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         74 ARARA--------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        74 ~~~~~--------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ...+.        +..+++..+++..++ +|+++||++|.|++++|..|++.+.+...
T Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             HTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred             hhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence            76654        377888999999886 99999999999999999999999876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.78  E-value=1.7e-18  Score=135.54  Aligned_cols=114  Identities=27%  Similarity=0.402  Sum_probs=101.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus        46 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~  124 (170)
T 1r2q_A           46 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLA  124 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc
Confidence            4567788899999999    777777655   89999999999 9999999999999998764 2689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            8788888899999999999999999999999999999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.78  E-value=2.8e-18  Score=139.72  Aligned_cols=120  Identities=22%  Similarity=0.306  Sum_probs=106.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..... .+.|++||+||+|+.
T Consensus        65 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~  143 (200)
T 2o52_A           65 RVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLD  143 (200)
T ss_dssp             EEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGG
T ss_pred             EEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcc
Confidence            4567788899999999    677777665   89999999999 99999999999999887642 689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|++.+......
T Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            8888888899999999999999999999999999999999998876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.78  E-value=1.6e-18  Score=135.10  Aligned_cols=117  Identities=26%  Similarity=0.417  Sum_probs=104.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|..++.+.....+.|+++|+||+|+.
T Consensus        42 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1kao_A           42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE  121 (167)
T ss_dssp             EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence            4677889999999999    677777665   89999999999 999999999999999877645689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+++..+++..+++..+++++++||++|.|++++|..|++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            888888889999999999999999999999999999999987753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.77  E-value=3e-18  Score=136.02  Aligned_cols=116  Identities=28%  Similarity=0.414  Sum_probs=103.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus        52 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~  130 (181)
T 2efe_B           52 QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLL  130 (181)
T ss_dssp             EEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred             EEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc
Confidence            4567788899999999    777777665   89999999999 9999999999999998764 2589999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            888888899999999999999999999999999999999976644

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.77  E-value=2.9e-18  Score=135.56  Aligned_cols=115  Identities=22%  Similarity=0.397  Sum_probs=102.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+.
T Consensus        55 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~  133 (179)
T 1z0f_A           55 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLE  133 (179)
T ss_dssp             EEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCG
T ss_pred             EEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccc
Confidence            4567788899999999    777776655   99999999999 99999999999999987652 678999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..++++++++..+++++++||++|.|++++|..|++.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            88888888999999999999999999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.77  E-value=5.4e-18  Score=139.54  Aligned_cols=117  Identities=21%  Similarity=0.356  Sum_probs=96.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+....  .+.|++||+||+|+
T Consensus        73 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  150 (214)
T 2j1l_A           73 VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDL  150 (214)
T ss_dssp             EEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            4567889999999999    788887765   99999999999 999999996 7999998765  68999999999999


Q ss_pred             CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+            .+..+++..+++..++ +|+++||++|.|++++|..|++.+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             hccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            7653            6777889999999997 9999999999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.77  E-value=3.4e-18  Score=133.79  Aligned_cols=115  Identities=23%  Similarity=0.395  Sum_probs=103.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+....  .+.|+++|+||+|+.
T Consensus        45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~  122 (168)
T 1z2a_A           45 RQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL  122 (168)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccC
Confidence            4567788899999999    677777765   99999999999 9999999999999998776  789999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..++++.+++..+++++++||+++.|++++|..|.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            888888889999999999999999999999999999999988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.77  E-value=7.2e-18  Score=135.83  Aligned_cols=118  Identities=29%  Similarity=0.409  Sum_probs=105.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+||.
T Consensus        65 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~  143 (193)
T 2oil_A           65 RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLS  143 (193)
T ss_dssp             EEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcc
Confidence            4567788899999999    788877765   99999999999 9999999999999987654 3689999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            87888888999999999999999999999999999999999887653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=5.7e-18  Score=135.98  Aligned_cols=118  Identities=21%  Similarity=0.355  Sum_probs=103.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++..+....+.|++||+||+|+.
T Consensus        55 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           55 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred             EEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence            4567788899999999    777777765   99999999999 999999999999999776544689999999999995


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                       .+.+..+++..+++..+++++++||+++.|++++|..|++.+.+.+
T Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          135 -NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             -SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             -ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence             4567778889999999999999999999999999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=4e-18  Score=137.97  Aligned_cols=118  Identities=23%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++ +.++..   ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+.
T Consensus        67 ~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  145 (196)
T 2atv_A           67 HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  145 (196)
T ss_dssp             EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence            4567889999999999    33 334333   89999999999 999999999999999887655789999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..+++..+++..+++++++||++|. |++++|..|++.+.+.+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            888888899999999999999999999999 99999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.77  E-value=4.4e-18  Score=135.45  Aligned_cols=116  Identities=16%  Similarity=0.293  Sum_probs=101.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+....  .+.|+++|+||+|+
T Consensus        44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  121 (186)
T 1mh1_A           44 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  121 (186)
T ss_dssp             EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHH
T ss_pred             EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccc
Confidence            4567889999999999    778877765   99999999999 999999997 7999998765  58999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ...            +.+..+++..+++..++ +++++||++|.|++++|..|++.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence            654            46778888999999997 999999999999999999999888543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.77  E-value=3.7e-18  Score=138.01  Aligned_cols=116  Identities=22%  Similarity=0.453  Sum_probs=102.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ +..+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus        66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~  144 (192)
T 2il1_A           66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCE  144 (192)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc
Confidence            4567788899999999    777776655   89999999999 9999999999999988764 3579999999999998


Q ss_pred             CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+++..++++.+++.. +++++++||++|.|++++|..|++.+.+
T Consensus       145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            88888888999999885 8899999999999999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.77  E-value=5.3e-18  Score=134.57  Aligned_cols=119  Identities=16%  Similarity=0.154  Sum_probs=98.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCC-
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLA-   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~-   74 (238)
                      +.+.+++..+.+++||    +++  ....++|++|+|||+ ++.+|+.+..|+..+.....  ..+.|++|||||+|+. 
T Consensus        45 ~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (178)
T 2iwr_A           45 KEMLVDGQTHLVLIREEAGAPDA--KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  122 (178)
T ss_dssp             EEEEETTEEEEEEEEECSSSCCH--HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred             EEEEECCEEEEEEEEECCCCchh--HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            5678899999999999    331  111289999999999 99999999998777765532  2578999999999994 


Q ss_pred             -CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 -RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 -~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                       ..+.+..+++.++++.. +++|+++||++|.|++++|..|++.+...+..
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          123 SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence             56778888999998875 78999999999999999999999998776543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.76  E-value=6.5e-18  Score=132.41  Aligned_cols=116  Identities=24%  Similarity=0.457  Sum_probs=101.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+ 
T Consensus        43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-  120 (170)
T 1g16_A           43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-  120 (170)
T ss_dssp             EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC-
T ss_pred             EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC-
Confidence            3566778889999999    777777665   99999999999 9999999999999998765 257899999999999 


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|.+.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          121 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            4556778888999999999999999999999999999999988754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.76  E-value=2.9e-18  Score=137.40  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=100.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+ ..|+..+.++.  .+.|++||+||+|+
T Consensus        46 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  123 (184)
T 1m7b_A           46 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL  123 (184)
T ss_dssp             EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchh
Confidence            4567788899999999    778877765   99999999999 99999999 78999998765  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCC-CeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042         74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVG-IHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~-t~~gv~elf~~i~~~l~~  119 (238)
                      ...            +.+..+++..+++.++ ++|++|||+ ++.|++++|..+++.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            742            5678889999999887 799999999 689999999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.76  E-value=3.7e-18  Score=136.56  Aligned_cols=112  Identities=23%  Similarity=0.470  Sum_probs=100.5

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+++||    ++|+.++..   ++|++|+|||+ ++.+++.+..|+..+.......+.|+++|+||+|+...+.+..+
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  148 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE  148 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence            79999999    677766544   99999999999 99999999999999988764468999999999999888888888


Q ss_pred             HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        83 ~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +++.+++..+++++++||+++.|++++|..|.+.+.+...
T Consensus       149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.76  E-value=3e-18  Score=137.77  Aligned_cols=116  Identities=16%  Similarity=0.361  Sum_probs=100.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCc-ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYE-KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~-~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+.|||    ++|+ .++..   ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|++||+||+|+
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  139 (189)
T 1z06_A           60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL  139 (189)
T ss_dssp             EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            4567888899999999    6666 55544   99999999999 99999999999999988754578999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCC---CCHHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIH---HNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~---~gv~elf~~i~~~l~  118 (238)
                      ...+++..++++.+++..+++++++||+++   .|++++|..|++.+.
T Consensus       140 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             cccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            888888889999999999999999999999   999999999987764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.76  E-value=5.5e-18  Score=137.56  Aligned_cols=119  Identities=23%  Similarity=0.424  Sum_probs=105.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus        48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  126 (203)
T 1zbd_A           48 KTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDME  126 (203)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCT
T ss_pred             EEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC
Confidence            4567788899999999    777776655   89999999999 9999999999999998764 3678999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  174 (203)
T 1zbd_A          127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS  174 (203)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            888888889999999999999999999999999999999999877643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.76  E-value=6.6e-18  Score=132.37  Aligned_cols=114  Identities=27%  Similarity=0.432  Sum_probs=101.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ....|+++|+||+|+.
T Consensus        46 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~  124 (170)
T 1z0j_A           46 KTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLT  124 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCG
T ss_pred             EEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccc
Confidence            4567788889999999    777777655   99999999999 9999999999999998764 3688999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+++..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999999998765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=3.8e-18  Score=137.80  Aligned_cols=116  Identities=28%  Similarity=0.390  Sum_probs=102.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus        63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~  141 (192)
T 2fg5_A           63 KTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLS  141 (192)
T ss_dssp             EEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence            3456677889999999    778777765   99999999999 9999999999999998765 3679999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.+..++++++++..+++++++||+++.|++++|..|.+.+.+
T Consensus       142 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            878888899999999999999999999999999999999976643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.75  E-value=4.7e-18  Score=133.06  Aligned_cols=114  Identities=25%  Similarity=0.425  Sum_probs=100.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  121 (170)
T 1ek0_A           43 QRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXL  121 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcc
Confidence            4567788999999999    677777655   89999999999 9999999999999998765 3689999999999997


Q ss_pred             Cc---ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RA---RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~---~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..   +++..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus       122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            55   67888889999999999999999999999999999998654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.75  E-value=2.1e-17  Score=132.55  Aligned_cols=118  Identities=22%  Similarity=0.366  Sum_probs=98.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ +..+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~  139 (190)
T 3con_A           60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP  139 (190)
T ss_dssp             EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred             EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence            4577888899999999    677777655   89999999999 999999999999999887644689999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      . +.+..++++++++..+++++++||+++.|++++|..|++.+.+.+
T Consensus       140 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             C-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             c-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            6 566788899999999999999999999999999999999887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.75  E-value=4.8e-18  Score=137.95  Aligned_cols=115  Identities=18%  Similarity=0.379  Sum_probs=99.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus        68 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           68 KTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGH
T ss_pred             EEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc
Confidence            4677889999999999    778777655   89999999999 9999999999999988754 2579999999999996


Q ss_pred             ------CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 ------RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ------~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                            ..+.+..++++.+++..+++|+++||++|.|++++|..|++.+.
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                  45677888899999999999999999999999999999998774

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.75  E-value=3e-18  Score=136.14  Aligned_cols=113  Identities=20%  Similarity=0.366  Sum_probs=92.8

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+++..+.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+. .|+..+..+.  .+.|+++|+||+|+.
T Consensus        48 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~  125 (182)
T 3bwd_D           48 NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLR  125 (182)
T ss_dssp             CCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHH
T ss_pred             EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhh
Confidence            345677789999999    888887765   89999999999 999999997 7999998875  589999999999997


Q ss_pred             Cccc----------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARA----------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~----------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.          +..+++.++++..++ +|+++||++|.|++++|..|++.+.
T Consensus       126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            6554          477888999999886 9999999999999999999998763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.75  E-value=6.3e-18  Score=133.56  Aligned_cols=114  Identities=25%  Similarity=0.398  Sum_probs=101.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus        54 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~  132 (179)
T 2y8e_A           54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLS  132 (179)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGG
T ss_pred             EEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc
Confidence            4567788899999999    777777765   99999999999 9999999999999988765 2679999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999999998755

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.75  E-value=2.5e-17  Score=134.05  Aligned_cols=114  Identities=19%  Similarity=0.338  Sum_probs=100.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+ ..|+..+....  .+.|+++|+||+|+
T Consensus        64 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  141 (201)
T 2gco_A           64 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL  141 (201)
T ss_dssp             EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHh
Confidence            4567889999999999    778877765   99999999999 99999999 68998888765  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...            +.+..+++..+++..++ +++++||++|.|++++|..|++.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            765            45778889999999988 8999999999999999999998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.75  E-value=2.7e-18  Score=140.95  Aligned_cols=112  Identities=25%  Similarity=0.502  Sum_probs=99.4

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+...+.+..+
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~  162 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  162 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence            78999999    777776655   99999999999 99999999999988765543368999999999999888888889


Q ss_pred             HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        83 ~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +++.+++..+++++++||+++.|++++|..|++.+.+...
T Consensus       163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999877543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.75  E-value=5e-18  Score=137.67  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=93.6

Q ss_pred             cEEEECCe--EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEe
Q psy14042          3 QSLQGHSG--KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANK   70 (238)
Q Consensus         3 k~i~~~~~--~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK   70 (238)
                      +.+.+++.  .+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..+..  ..+.|++||+||
T Consensus        62 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  141 (208)
T 2yc2_C           62 APVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK  141 (208)
T ss_dssp             EEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred             EEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence            45667776  89999999    667666655   89999999999 99999999999999988763  258999999999


Q ss_pred             ccCCC-cccccHHHHHHHHHhCCCeEEEEccCC-CCCHHHHHHHHHHHHHhhh
Q psy14042         71 IDLAR-ARAVSSQDAKNLAASFKVKFIEVSVGI-HHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        71 ~DL~~-~~~v~~~~~~~~~~~~~~~~~evSA~t-~~gv~elf~~i~~~l~~~~  121 (238)
                      +|+.. .+.+..+++..+++..+++++++||++ +.|++++|..|++.+.+..
T Consensus       142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            99988 788888999999999999999999999 9999999999999887654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.75  E-value=6e-18  Score=138.80  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=100.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+ ..|+..+.++.  .+.|++||+||+|+
T Consensus        67 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  144 (205)
T 1gwn_A           67 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL  144 (205)
T ss_dssp             EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhh
Confidence            3566788899999999    778887765   99999999999 99999999 78999998765  68999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCC-CeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042         74 AR------------ARAVSSQDAKNLAASFK-VKFIEVSVG-IHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~-~~~~evSA~-t~~gv~elf~~i~~~l~~  119 (238)
                      ..            .+.+..+++..+++..+ ++|++|||+ ++.|++++|..|++.+..
T Consensus       145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            74            25678888999999887 799999999 689999999999988754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.75  E-value=2.2e-17  Score=128.32  Aligned_cols=116  Identities=23%  Similarity=0.383  Sum_probs=102.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus        42 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~  121 (166)
T 2ce2_X           42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA  121 (166)
T ss_dssp             EEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred             EEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence            4567788899999999    677777665   89999999999 999999999999999887654689999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      . +.+..+++.++++..+++++++||++|.|++++|..|++.+.+
T Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             C-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             h-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            6 5567788899999999999999999999999999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.74  E-value=2.3e-17  Score=130.46  Aligned_cols=116  Identities=18%  Similarity=0.283  Sum_probs=100.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgNK~   71 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++++|||+ +..+|+.+..|+.++......   .+.|+++|+||+
T Consensus        47 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~  126 (177)
T 1wms_A           47 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI  126 (177)
T ss_dssp             EEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred             EEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence            4567788899999999    777776655   89999999999 999999999999998876532   678999999999


Q ss_pred             cCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         72 DLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      |+. .+.+..+++..+++ ..+++++++||++|.|++++|..|++.+.+
T Consensus       127 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          127 DIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            998 56677888888888 567899999999999999999999998865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=4.6e-17  Score=133.05  Aligned_cols=115  Identities=22%  Similarity=0.370  Sum_probs=100.7

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+++..+.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+ ..|+..+....  .+.|+++|+||+|+.
T Consensus        65 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~  142 (207)
T 2fv8_A           65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLR  142 (207)
T ss_dssp             EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGG
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhh
Confidence            467788899999999    778877765   89999999999 89999999 78999888765  689999999999997


Q ss_pred             Cc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..            +.+..+++..+++..++ +++++||++|.|++++|..|++.+...
T Consensus       143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             ccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            54            45777888899999887 899999999999999999999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.73  E-value=3.9e-17  Score=129.32  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=93.6

Q ss_pred             EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042          4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI   71 (238)
Q Consensus         4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~   71 (238)
                      .+.++ +..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.....   ..+.|+++|+||+
T Consensus        49 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  128 (182)
T 1ky3_A           49 EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI  128 (182)
T ss_dssp             EECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred             EEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence            34455 5678999999    778877665   99999999999 99999999999999887643   2678999999999


Q ss_pred             cCC-CcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         72 DLA-RARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        72 DL~-~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      |+. ..+.+..+++..+++ ..+++++++||++|.|++++|..|++.+.+..
T Consensus       129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            995 445677888888888 56789999999999999999999999887653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.73  E-value=4.4e-17  Score=132.85  Aligned_cols=118  Identities=23%  Similarity=0.443  Sum_probs=103.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+ 
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl-  137 (213)
T 3cph_A           60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM-  137 (213)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTC-
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC-
Confidence            4567788899999999    778777655   99999999999 99999999999999987652 57899999999999 


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ..+.+..+++..+++..+++++++||+++.|++++|..|.+.+.+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  185 (213)
T 3cph_A          138 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID  185 (213)
T ss_dssp             SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            456677788889999999999999999999999999999999877643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.73  E-value=6.5e-18  Score=135.61  Aligned_cols=113  Identities=16%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C------cchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y------KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI   71 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d------~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~   71 (238)
                      .+++..+.++|||    ++|+.++..   ++|++|+|||+ +      .++|..+..|+.++..  ...+.|++||+||+
T Consensus        68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~  145 (198)
T 3t1o_A           68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKR  145 (198)
T ss_dssp             CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECT
T ss_pred             cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEch
Confidence            4567789999999    788888775   99999999999 3      4677777888888732  23789999999999


Q ss_pred             cCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         72 DLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ||...  +..++++++++..++ +++++||++|.|++++|..|++.+.+...
T Consensus       146 Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          146 DLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             TSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             hcccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99764  778889999999999 99999999999999999999999877653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=1.2e-17  Score=131.00  Aligned_cols=115  Identities=25%  Similarity=0.351  Sum_probs=99.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL   73 (238)
                      +.+..++..+.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+..+.+.... .+.|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl  121 (172)
T 2erx_A           42 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE  121 (172)
T ss_dssp             EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence            3456788889999999    777776655   89999999999 999999999999888776432 57999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...+++..+++..+++..+++++++||++|.|++++|..|++.+
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            88888888888999999999999999999999999999998654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.72  E-value=2.2e-17  Score=134.85  Aligned_cols=113  Identities=17%  Similarity=0.332  Sum_probs=97.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+....  .+.|++||+||+|+
T Consensus        69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  146 (204)
T 4gzl_A           69 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  146 (204)
T ss_dssp             EEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHH
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhh
Confidence            4567788899999999    788887765   99999999999 999999997 8999998865  78999999999999


Q ss_pred             CCccc------------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARARA------------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~------------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...+.            +..+++..+++..++ +++++||++|.|++++|..|++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             ccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            76543            777888999999886 699999999999999999998643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.72  E-value=1.3e-18  Score=141.29  Aligned_cols=115  Identities=24%  Similarity=0.443  Sum_probs=94.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus        73 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~  151 (199)
T 3l0i_B           73 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT  151 (199)
T ss_dssp             EEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC
T ss_pred             EEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCC
Confidence            4677889999999999    788887766   99999999999 9999999999999997654 2589999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..++++.+++..+++++++||++|.|++++|..|++.+.
T Consensus       152 ~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             --CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            88878777888999999999999999999999999999986653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.72  E-value=6.8e-17  Score=131.17  Aligned_cols=119  Identities=17%  Similarity=0.269  Sum_probs=101.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgNK~   71 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++......   .+.|+++|+||+
T Consensus        48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  127 (207)
T 1vg8_A           48 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI  127 (207)
T ss_dssp             EEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence            3556778889999999    778777665   99999999999 999999999999998776421   478999999999


Q ss_pred             cCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         72 DLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      |+. .+.+..+++..++. ..+++++++||++|.|++++|..|++.+.+...
T Consensus       128 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          128 DLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             TSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            998 55667778888887 678899999999999999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.72  E-value=4.8e-17  Score=132.38  Aligned_cols=110  Identities=14%  Similarity=0.144  Sum_probs=89.5

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++  +.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus        62 ~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A           62 EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP  139 (198)
T ss_dssp             EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred             EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence            4566777  8899999    788888765   99999999999 999999999999998765434689999999999997


Q ss_pred             CcccccHHHHHHHHHh-----------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAAS-----------------FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~-----------------~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      .  .+..+++.+++..                 .++++++|||++|+|++++|.+|++.
T Consensus       140 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          140 E--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             T--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             c--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            5  4666777776652                 34689999999999999999999853

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.71  E-value=1.7e-16  Score=127.54  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=93.6

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD   83 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~   83 (238)
                      +.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++....   +.|+++|+||+| ...+.+..++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~  168 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILE  168 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHH
Confidence            8999999    777777665   99999999999 9999999999999998764   399999999999 5556778889


Q ss_pred             HHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         84 AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        84 ~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +..+++..+++++++||++|.|++++|..|++.+.+.
T Consensus       169 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          169 VQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.71  E-value=5.5e-17  Score=133.20  Aligned_cols=114  Identities=16%  Similarity=0.271  Sum_probs=97.8

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      +..+.+.+||    ++|+.++..   ++|++|+|||+ +..+|+.+..|+..+..... .+.|++||+||+|+...+.+.
T Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~  136 (218)
T 4djt_A           58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKIS  136 (218)
T ss_dssp             SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CC
T ss_pred             CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccC
Confidence            4458999999    777777765   89999999999 99999999999999987652 568999999999999888888


Q ss_pred             HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      .+++..+++..+++++++||++|.|++++|..|++.+......
T Consensus       137 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          137 KKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            9899999999999999999999999999999999998766543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.70  E-value=8.3e-17  Score=130.02  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=90.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++  +.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus        60 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B           60 EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP  137 (190)
T ss_dssp             EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence            3566676  8899999    778877755   99999999999 999999999999998765434689999999999997


Q ss_pred             CcccccHHHHHHHHHh------------CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAAS------------FKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~------------~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      .  .+..+++.+.+..            .+++|++|||++|.|++++|..|++
T Consensus       138 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          138 N--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             T--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             C--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence            6  4556666665442            4578999999999999999999974

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=5e-17  Score=130.98  Aligned_cols=118  Identities=21%  Similarity=0.287  Sum_probs=100.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+...... .+.|+++|+||+|+
T Consensus        47 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl  126 (199)
T 2gf0_A           47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE  126 (199)
T ss_dssp             EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred             EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence            3456788899999999    777776655   89999999999 899999999998888775432 57899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      .. +.+..+++..++..++++++++||++|.|++++|..|++.+....
T Consensus       127 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          127 TQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN  173 (199)
T ss_dssp             SS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred             Cc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence            75 566778888899999999999999999999999999998775543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.70  E-value=5.7e-17  Score=133.63  Aligned_cols=116  Identities=13%  Similarity=0.271  Sum_probs=100.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+..  .+.|++||+||+|+.
T Consensus        55 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~  132 (221)
T 3gj0_A           55 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK  132 (221)
T ss_dssp             EEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSS
T ss_pred             EEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccc
Confidence            3566788899999999    788887765   99999999999 9999999999999998875  689999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ......  +...+++..+++|+++||++|.|++++|..|++.+.....
T Consensus       133 ~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          133 DRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             SCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             cccccH--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            654322  5556777889999999999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.69  E-value=4.5e-17  Score=131.29  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-------CCCCEEEEEEecc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-------RTRPAIIVANKID   72 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-------~~~piilVgNK~D   72 (238)
                      ++..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+..+.+....       .+.|++||+||+|
T Consensus        59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D  138 (199)
T 4bas_A           59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD  138 (199)
T ss_dssp             EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred             EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence            34458899999    788887766   99999999999 999999999999998764211       2899999999999


Q ss_pred             CCCccc---ccHHHHH-HHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         73 LARARA---VSSQDAK-NLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        73 L~~~~~---v~~~~~~-~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +.....   +...... .+++..++++++|||++|.||+++|..|++.+.+..
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          139 AAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             STTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            976532   2222222 222557889999999999999999999999987664

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.69  E-value=2.6e-16  Score=136.72  Aligned_cols=115  Identities=17%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+....  .+.|+++|+||+|+
T Consensus       194 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl  271 (332)
T 2wkq_A          194 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDL  271 (332)
T ss_dssp             EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHH
T ss_pred             EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhc
Confidence            4567889999999999    778777765   99999999999 999999997 7999988765  58999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ...            +.+..+++..+++..++ +|++|||++|.|++++|..|++.+..
T Consensus       272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            653            56788899999999997 99999999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.68  E-value=9.6e-17  Score=136.19  Aligned_cols=89  Identities=20%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh-CCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-~~~~~~evSA~t~  103 (238)
                      ++|++|+|||+ ++  .+|+.+..|+.++.+.....+.|++||+||+||...+.+  +++..+++. .+++|+++||++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN  239 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence            48999999999 87  999999999999877532367999999999999876655  567778876 4899999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy14042        104 HNVDELLVGILNQIR  118 (238)
Q Consensus       104 ~gv~elf~~i~~~l~  118 (238)
                      .|++++|..|++.+.
T Consensus       240 ~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          240 VNVDLAFSTLVQLID  254 (255)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999998763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.68  E-value=1.7e-17  Score=129.60  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=83.8

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+.+++||    ++|+.++..   ++|++++|||+ ++++|+.+..|+.++.......+.|+++|+||+|+.....  .
T Consensus        42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~  119 (164)
T 1r8s_A           42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A  119 (164)
T ss_dssp             SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--H
Confidence            348899999    677776654   99999999999 9999999999999987643336899999999999976421  2


Q ss_pred             HHHHH-----HHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         82 QDAKN-----LAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        82 ~~~~~-----~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ++...     .+...+++++++||++|.|++++|..|++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            22211     122346789999999999999999999987643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.68  E-value=2.3e-16  Score=126.54  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++.++  .+.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.......+.|+++|+||+|+..
T Consensus        60 ~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  137 (189)
T 2x77_A           60 TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD  137 (189)
T ss_dssp             EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred             EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence            44555  37899999    788888765   99999999999 9999999999999887654446899999999999976


Q ss_pred             ccc---ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         76 ARA---VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        76 ~~~---v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ...   +........++..+++++++||+++.|++++|..|.+.+.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          138 AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            422   111111112233467899999999999999999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.68  E-value=1.3e-16  Score=129.24  Aligned_cols=106  Identities=18%  Similarity=0.213  Sum_probs=88.7

Q ss_pred             CeEEEEEEEe----CCCcccc---cC---CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          9 SGKVRAIIWN----EQYEKLT---SS---DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~---~~---~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      +..+.++|||    ++|+.+.   ..   ++|++|+|||+ ++  +++..+..|+.++....  .+.|++|||||+||..
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~  143 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLS  143 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSC
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCc
Confidence            6678999999    8887775   33   99999999999 76  67777788888876544  6899999999999864


Q ss_pred             -------cccccHHHHHHHHH----hCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         76 -------ARAVSSQDAKNLAA----SFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        76 -------~~~v~~~~~~~~~~----~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                             .+.+..+++..+++    ..+++|++|||++ .||+++|..|++.+
T Consensus       144 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          144 DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                   45666777888888    6789999999999 99999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.68  E-value=1.3e-16  Score=125.21  Aligned_cols=114  Identities=14%  Similarity=0.189  Sum_probs=88.7

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.++  .+.+++||    ++|+.++..   ++|++|+|||+ ++.+|..+..|+..+.+.....+.|+++|+||+|+..
T Consensus        45 ~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           45 TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence            44555  47899999    778877755   99999999999 8999999999998887654336899999999999976


Q ss_pred             ccc---ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         76 ARA---VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        76 ~~~---v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ...   +........++..+++++++||++|.|++++|..|++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          123 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            532   11111112233457789999999999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.67  E-value=1.1e-16  Score=129.60  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+.....  .+
T Consensus        72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~  149 (192)
T 2b6h_A           72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VS  149 (192)
T ss_dssp             TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HH
Confidence            38899999    788888765   99999999999 9999999999999987654346899999999999975422  22


Q ss_pred             HHHH-----HHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         83 DAKN-----LAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        83 ~~~~-----~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +...     .+...++++++|||++|.|++++|..|++.+.
T Consensus       150 ~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          150 ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            2211     12234568999999999999999999997763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=6.8e-16  Score=123.67  Aligned_cols=114  Identities=11%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++  +.+++||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus        53 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           53 EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  130 (187)
T ss_dssp             EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred             EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence            3556655  8899999    788887765   99999999999 999999999999998775333689999999999997


Q ss_pred             CcccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..  ...++.....     +..+++++++||++|.|++++|++|++.+...
T Consensus       131 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          131 EC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             TC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred             CC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence            53  2333443332     23467899999999999999999999877443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=122.64  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC--CCCCEEEEEEeccC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL--RTRPAIIVANKIDL   73 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~--~~~piilVgNK~DL   73 (238)
                      .+.+++  +.+.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.+....  .+.|+++|+||+|+
T Consensus        61 ~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  138 (190)
T 2h57_A           61 KFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL  138 (190)
T ss_dssp             EEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred             EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence            445554  7899999    788887765   99999999999 999999999999998876433  57999999999999


Q ss_pred             CCcccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ...  ...+++...+.     ..+++++++||++|.|++++|+.|.+.+.+
T Consensus       139 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          139 RDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            753  33445555543     246789999999999999999999987643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.65  E-value=7.8e-17  Score=129.10  Aligned_cols=112  Identities=20%  Similarity=0.211  Sum_probs=86.0

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++.+++  +.+++||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus        54 ~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  131 (181)
T 1fzq_A           54 SVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT  131 (181)
T ss_dssp             EEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence            455553  7899999    677776654   99999999999 9999999999998876543336899999999999976


Q ss_pred             cccccHHHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         76 ARAVSSQDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        76 ~~~v~~~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ....  ++..+.     +...++++++|||++|.|++++|.+|++.+.+
T Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          132 AAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             CCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            5432  222222     12345789999999999999999999977644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.65  E-value=5.7e-16  Score=123.13  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.+++  +.+.+||    ++|+.++..   ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus        56 ~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  133 (183)
T 1moz_A           56 TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG  133 (183)
T ss_dssp             EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence            455554  8899999    778777765   99999999999 9999999999999987654347899999999999975


Q ss_pred             cccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         76 ARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        76 ~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..  ..++......     ..+++++++||++|.|++++|..|++.+.++
T Consensus       134 ~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          134 AL--SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             CC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            32  2333333322     2346899999999999999999999988654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.65  E-value=2.2e-16  Score=126.10  Aligned_cols=110  Identities=12%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++  +.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+||.
T Consensus        58 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           58 EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  135 (181)
T ss_dssp             EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence            3566665  8899999    778877765   99999999999 899999999999998765323789999999999997


Q ss_pred             CcccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        75 ~~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..  ...++.....     +..+++++++||++|.|++++|..|++.
T Consensus       136 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          136 EC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             cC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            53  2233333332     2346789999999999999999999853

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.65  E-value=1.3e-16  Score=127.96  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      +..+.+++||    ++|+.+++.   +++++++|||+ ++ .+|+.+..|+.++....  .+.|++|||||+|+...+.+
T Consensus        53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~  130 (184)
T 2zej_A           53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQR  130 (184)
T ss_dssp             ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHH
T ss_pred             CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhh
Confidence            4678999999    778877765   89999999999 66 58999999999988764  57999999999999876654


Q ss_pred             c---HHHHHHHHHhCCCe----EEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042         80 S---SQDAKNLAASFKVK----FIEVSVGIHH-NVDELLVGILNQIRLKR  121 (238)
Q Consensus        80 ~---~~~~~~~~~~~~~~----~~evSA~t~~-gv~elf~~i~~~l~~~~  121 (238)
                      .   .+.+..+++..+++    |+++||+++. |+++++..|.+.+...+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             HHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence            3   34556677777886    9999999997 99999999998887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.45  E-value=1.2e-17  Score=135.97  Aligned_cols=113  Identities=17%  Similarity=0.334  Sum_probs=96.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+. .|+..+....  .+.|+++|+||+|+
T Consensus        69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl  146 (204)
T 3th5_A           69 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  146 (204)
Confidence            3456778889999999    788877765   89999999999 999999997 8988887654  48999999999999


Q ss_pred             CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...+            .+..+++..+++..++ +++++||++|.|++++|..|++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            7543            5566778888888887 899999999999999999998654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.64  E-value=5.2e-15  Score=120.00  Aligned_cols=118  Identities=30%  Similarity=0.449  Sum_probs=104.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   +++++++|||+ +..+|+.+..|+.++.... ..+.|+++|+||+||.
T Consensus        45 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~  123 (199)
T 2f9l_A           45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLR  123 (199)
T ss_dssp             EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence            4678899999999999    677776655   89999999999 8999999999998887653 2578999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+.+..++++.++...++.++++||+++.|++++|..|.+.+.+..
T Consensus       124 ~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999987654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.63  E-value=2e-15  Score=120.57  Aligned_cols=113  Identities=19%  Similarity=0.203  Sum_probs=88.8

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++.+++  +.+++||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus        56 ~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A           56 TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG  133 (186)
T ss_dssp             EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence            455554  7899999    667776655   99999999999 9999999999999987654336899999999999976


Q ss_pred             cccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         76 ARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        76 ~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ...  .++..+..     +..+++++++||++|.|++++|..|.+.+.+.
T Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          134 ALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            433  22332222     23467899999999999999999999888653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.61  E-value=1.7e-15  Score=131.69  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             EEEEEe--CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042         13 RAIIWN--EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK   85 (238)
Q Consensus        13 ~l~iWD--e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~   85 (238)
                      +++|||  |+|+++++.   ++|++|+|||+ ++. +|+.+..|+.++..    .++|++||+||+||...+.+  +++.
T Consensus        64 ~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~  137 (301)
T 1u0l_A           64 SGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVR  137 (301)
T ss_dssp             SEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHH
T ss_pred             eEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHH
Confidence            689999  999999987   99999999999 776 79999999998865    57999999999999876544  4566


Q ss_pred             HHHHhCC--CeEEEEccCCCCCHHHHHHHHH
Q psy14042         86 NLAASFK--VKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        86 ~~~~~~~--~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ++++.++  ++|++|||++|.|++++|..+.
T Consensus       138 ~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          138 ELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            6777666  8999999999999999998775

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.60  E-value=1.9e-14  Score=116.29  Aligned_cols=114  Identities=30%  Similarity=0.460  Sum_probs=100.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.+++||    ++|+.++..   +++++++|||+ +..+|+++..|+.++.... ..+.|+++|+||+||.
T Consensus        69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~  147 (191)
T 1oix_A           69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLR  147 (191)
T ss_dssp             EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc
Confidence            4678899999999999    677777655   78999999999 8999999999998887653 2578999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..++++.++...++.++++||+++.|++++|+.|.+.+
T Consensus       148 ~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            8778888889999999999999999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.60  E-value=3.8e-16  Score=125.55  Aligned_cols=106  Identities=13%  Similarity=0.236  Sum_probs=83.0

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.++|||    ++|+.++..   ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+....  ..+
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~  143 (188)
T 1zd9_A           66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEK  143 (188)
T ss_dssp             TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHH
Confidence            47899999    667776655   89999999999 999999999999988765333689999999999997542  122


Q ss_pred             HHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         83 DAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        83 ~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +....     +...+++++++||++|.|++++|..|++.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          144 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             HHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22211     1234578999999999999999999997653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.59  E-value=2.9e-15  Score=133.05  Aligned_cols=115  Identities=12%  Similarity=0.079  Sum_probs=95.6

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      ++.++  .+.++|||    ++|+++|..   +++++|+|||+ +          ..+|.....|+..+.......+.|+|
T Consensus       187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence            34444  48899999    899999987   99999999999 7          57899999999998775433689999


Q ss_pred             EEEEeccCCCcc---------------cccHHHHHHHHH-----------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         66 IVANKIDLARAR---------------AVSSQDAKNLAA-----------SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        66 lVgNK~DL~~~~---------------~v~~~~~~~~~~-----------~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      |||||+||..++               .+..+++..++.           ..++.+++|||+++.||+++|.++++.+..
T Consensus       265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            999999996433               356778888776           356789999999999999999999998865


Q ss_pred             h
Q psy14042        120 K  120 (238)
Q Consensus       120 ~  120 (238)
                      .
T Consensus       345 ~  345 (353)
T 1cip_A          345 N  345 (353)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.57  E-value=4.9e-15  Score=131.64  Aligned_cols=112  Identities=10%  Similarity=0.062  Sum_probs=87.4

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-----------CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-----------YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI   71 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-----------d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~   71 (238)
                      +.++++|||    ++|++++..   +++++|+|||+           +..+|+....|+..+.......++|++|||||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            689999999    999999987   99999999998           468899999999998765433689999999999


Q ss_pred             cCCCccc--c-------------------cHHHHHHHHHh----------------CCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         72 DLARARA--V-------------------SSQDAKNLAAS----------------FKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        72 DL~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ||..++.  +                   ..+++..++..                ..+.+++|||+++.||+++|..++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9954322  1                   24566666432                234579999999999999999999


Q ss_pred             HHHHhhh
Q psy14042        115 NQIRLKR  121 (238)
Q Consensus       115 ~~l~~~~  121 (238)
                      +.+....
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9886543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.56  E-value=7.6e-16  Score=135.15  Aligned_cols=109  Identities=12%  Similarity=0.084  Sum_probs=85.3

Q ss_pred             eEEEEEEEe----CCCcc---cccC---CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042         10 GKVRAIIWN----EQYEK---LTSS---DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA   76 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~---l~~~---~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~   76 (238)
                      ..++|+|||    |+|+.   ++..   +++++|+|||+ ++  +++..+..|+.++.+..  +++|++|||||+||..+
T Consensus        44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSSCS
T ss_pred             cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccCch
Confidence            348999999    89974   2333   99999999999 77  33344444566555544  68999999999999753


Q ss_pred             -------ccccHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         77 -------RAVSSQDAKNLAAS----FKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        77 -------~~v~~~~~~~~~~~----~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                             +++..++++++++.    .+++||+|||++ .+|+++|..+++.+..+.
T Consensus       122 ~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          122 DFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             hhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence                   56778888888886    689999999998 699999999998776543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.56  E-value=3e-15  Score=131.71  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=83.6

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+.++|||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++.......++|++||+||+|+.....  .
T Consensus       207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~  284 (329)
T 3o47_A          207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A  284 (329)
T ss_dssp             TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred             CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--H
Confidence            347899999    888888765   99999999999 9999999999888876654346899999999999976432  2


Q ss_pred             HHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         82 QDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        82 ~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ++....     +...+++|+++||++|.||+++|..|++.+.+
T Consensus       285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            222221     22345789999999999999999999988754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.56  E-value=1.1e-14  Score=131.15  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=93.1

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      ++.+++  ++++|||    ++|+++|..   +++++|+|||+ +          ..+|+.+..|+..+.......++|++
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            455655  8999999    899999987   99999999999 8          89999999999999875434789999


Q ss_pred             EEEEeccCCCccc---c---------------------------cHHHHHHHH-----Hh--------CCCeEEEEccCC
Q psy14042         66 IVANKIDLARARA---V---------------------------SSQDAKNLA-----AS--------FKVKFIEVSVGI  102 (238)
Q Consensus        66 lVgNK~DL~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~evSA~t  102 (238)
                      |||||+||...+.   +                           ..+++..++     +.        .++.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999965433   2                           134555543     22        246788999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy14042        103 HHNVDELLVGILNQIRLKR  121 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~~~  121 (238)
                      +.||+++|..+.+.+....
T Consensus       369 ~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999998886553

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.52  E-value=3e-14  Score=126.94  Aligned_cols=116  Identities=9%  Similarity=0.023  Sum_probs=88.4

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      ++.+++  +.++|||    ++|+++|..   +++++|+|||+ +          ..+|.....|+..+.......++|+|
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence            345554  8899999    889999987   99999999999 7          78999999999998765433689999


Q ss_pred             EEEEeccCCCcc----------------cccHHHHHHHH--------H---hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         66 IVANKIDLARAR----------------AVSSQDAKNLA--------A---SFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        66 lVgNK~DL~~~~----------------~v~~~~~~~~~--------~---~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      |++||+||..++                .+..+++..++        +   ..++.+++|||+++.||+++|..+.+.+.
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999999996433                25667777665        1   34578999999999999999999999886


Q ss_pred             hhh
Q psy14042        119 LKR  121 (238)
Q Consensus       119 ~~~  121 (238)
                      ...
T Consensus       353 ~~~  355 (362)
T 1zcb_A          353 HDN  355 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.50  E-value=1e-13  Score=114.91  Aligned_cols=93  Identities=13%  Similarity=0.096  Sum_probs=73.3

Q ss_pred             CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH---HHHHHHHhCC--CeEEEEc
Q psy14042         28 DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ---DAKNLAASFK--VKFIEVS   99 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~---~~~~~~~~~~--~~~~evS   99 (238)
                      .+|++|+|||+ ++.+|+  ....|+..+....  .+.|+++|+||+|+...+.+..+   .+..+++..+  +++++||
T Consensus       108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  185 (228)
T 2qu8_A          108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS  185 (228)
T ss_dssp             SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred             cccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            78999999999 887775  2345666665432  58999999999999877777654   4566777777  8999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhc
Q psy14042        100 VGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus       100 A~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      |++|.|++++|..|++.+...+.
T Consensus       186 A~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          186 TLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.49  E-value=7.8e-14  Score=121.43  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             EECCeEEEEEEEe----CCC-----cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEec
Q psy14042          6 QGHSGKVRAIIWN----EQY-----EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKI   71 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~-----~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~   71 (238)
                      .+++ .+.++|||    ++|     +.++..   ++|++|+|||+ ++.+|+++..|...+..... ..+.|++||+||+
T Consensus        47 ~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~  125 (307)
T 3r7w_A           47 RFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM  125 (307)
T ss_dssp             EETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred             EeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence            3434 58899999    556     555544   89999999999 99999999777554433211 2689999999999


Q ss_pred             cCCC--ccc----ccHHHHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         72 DLAR--ARA----VSSQDAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        72 DL~~--~~~----v~~~~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      |+..  .+.    +..+++.++++.+|   ++|+++||++ .|+.++|..+++.+.
T Consensus       126 Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          126 DLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence            9987  554    66788899999987   7899999999 899999999987553

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.49  E-value=1.6e-14  Score=126.92  Aligned_cols=111  Identities=10%  Similarity=0.056  Sum_probs=92.3

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEE----------C-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWM----------L-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~d----------v-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      .++++|||    ++||++|..   +++++|+|||          . +..+|.....|+..+.......+.|++|+|||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            48999999    899999987   9999999995          4 5788888888888887654347899999999999


Q ss_pred             CCCcc----------------cccHHHHHHHH----------HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         73 LARAR----------------AVSSQDAKNLA----------ASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        73 L~~~~----------------~v~~~~~~~~~----------~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      |..++                .+..+++.++.          +..++.+++|||+++.||+++|..+.+.+....
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            96544                46677777773          345678899999999999999999999987643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.49  E-value=7.2e-14  Score=109.93  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=79.7

Q ss_pred             EEEECCeEEEEEEEe----CCCccc------ccC-----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKL------TSS-----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV   67 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l------~~~-----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV   67 (238)
                      .+.+++  +.+++||    ++|+..      ...     +++++++|+|. +.   +....|+.++.+    .+.|+++|
T Consensus        44 ~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv  114 (165)
T 2wji_A           44 EFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLA  114 (165)
T ss_dssp             EEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEE
T ss_pred             EEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEE
Confidence            344555  6799999    556422      111     78999999999 64   344568877765    47999999


Q ss_pred             EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      +||+|+...+.+.. +++.+++.++++++++||++|.|++++|..|++.+
T Consensus       115 ~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          115 LNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            99999976555543 46778888899999999999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.45  E-value=4.4e-13  Score=116.54  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CeEEEEEEEe----------CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          9 SGKVRAIIWN----------EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         9 ~~~v~l~iWD----------e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      |..|.+++||          ++|+.+.+.   ++|++++|||+ ++. +++.+..|+..+..    .++|++||+||+||
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL  122 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL  122 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence            4457777776          788888877   99999999999 775 89999999998765    67999999999999


Q ss_pred             CCccccc-HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042         74 ARARAVS-SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL  114 (238)
Q Consensus        74 ~~~~~v~-~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~  114 (238)
                      ..++++. .++...+++..+++++++||++|.|++++|..+.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            8665433 4456667777899999999999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.44  E-value=2.6e-14  Score=116.73  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=74.3

Q ss_pred             EEECCe-EEEEEEEe----CCCcc-cccC---CceEEEEEEEC-Cc-chHHHHHH-HHHHHHHhc-CCCCCCEEEEEEec
Q psy14042          5 LQGHSG-KVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YK-PSYHRVEQ-DVIRLHEEG-YLRTRPAIIVANKI   71 (238)
Q Consensus         5 i~~~~~-~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~-~s~~~~~~-~~~~l~~~~-~~~~~piilVgNK~   71 (238)
                      +.+++. .+.++|||    ++|+. ++..   ++|++|+|||+ +. .++..+.. |...+.... ...+.|++||+||+
T Consensus        46 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  125 (214)
T 2fh5_B           46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ  125 (214)
T ss_dssp             EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred             EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence            455544 68999999    66766 5543   99999999999 63 35666655 444444322 12579999999999


Q ss_pred             cCCCcccccH--HHHHHHHH---------------------------------hC--CCeEEEEccCCC------CCHHH
Q psy14042         72 DLARARAVSS--QDAKNLAA---------------------------------SF--KVKFIEVSVGIH------HNVDE  108 (238)
Q Consensus        72 DL~~~~~v~~--~~~~~~~~---------------------------------~~--~~~~~evSA~t~------~gv~e  108 (238)
                      ||...+....  +.+.....                                 ..  +++|++|||++|      .||++
T Consensus       126 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~  205 (214)
T 2fh5_B          126 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQD  205 (214)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHH
Confidence            9976543211  11111111                                 11  678999999999      99999


Q ss_pred             HHHHHHHH
Q psy14042        109 LLVGILNQ  116 (238)
Q Consensus       109 lf~~i~~~  116 (238)
                      +|.+|++.
T Consensus       206 lf~~l~~~  213 (214)
T 2fh5_B          206 LEKWLAKI  213 (214)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.44  E-value=1.5e-12  Score=102.64  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=76.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++.  .+.+||    ++|+.++..   ++|++|+|||+ +....+.. .++..+..    .+.|+++|+||+|+.
T Consensus        48 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~  120 (178)
T 2lkc_A           48 YQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKP  120 (178)
T ss_dssp             CEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSS
T ss_pred             EEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCC
Confidence            45667774  567999    788887765   89999999999 63222221 22222222    578999999999997


Q ss_pred             CcccccHHHHHHHHHh-------CC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAAS-------FK--VKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~-------~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      ...   .++.....+.       ++  ++++++||++|.|++++|..|++.+...+.
T Consensus       121 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          121 EAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             CSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            531   2222222222       22  589999999999999999999998876543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=5.8e-13  Score=106.17  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=82.9

Q ss_pred             EEECCeEEEEEEEe----CCCcc------cccC-----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042          5 LQGHSGKVRAIIWN----EQYEK------LTSS-----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN   69 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~------l~~~-----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgN   69 (238)
                      +.+++  +.+++||    ++|+.      ++..     +++++++|+|.  .+++....|+.++..    .+.|+++|+|
T Consensus        49 ~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~--~~~~~~~~~~~~~~~----~~~piilv~n  120 (188)
T 2wjg_A           49 FEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA--TALERNLYLTLQLME----MGANLLLALN  120 (188)
T ss_dssp             EEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEG--GGHHHHHHHHHHHHT----TTCCEEEEEE
T ss_pred             EEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecc--hhHHHHHHHHHHHHh----cCCCEEEEEE
Confidence            44444  7789999    55542      2222     58999998887  236777788888765    5789999999


Q ss_pred             eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      |+|+...+.+. .+++.+++..+++++++||+++.|++++|..+++.+...
T Consensus       121 K~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          121 KMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             hhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            99997655554 356778888899999999999999999999999887543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.38  E-value=3.6e-13  Score=125.56  Aligned_cols=109  Identities=12%  Similarity=0.145  Sum_probs=89.3

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      +..+.+.+||    +.|+.+...   ++|++|+|||+.  +++.+..|+.++..+.  .++|++||+||+|+...+.+..
T Consensus        95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s--~~~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~  170 (535)
T 3dpu_A           95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR--TDSNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQ  170 (535)
T ss_dssp             TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGG--GGGGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCH
T ss_pred             CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCC--CchhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCH
Confidence            3468899999    788887765   999999999982  2356678999998876  5799999999999998888888


Q ss_pred             HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         82 QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ++++.++...+++++++||++|.|++++|..|++.+....
T Consensus       171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999999999999886543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.37  E-value=2.7e-13  Score=108.04  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=71.0

Q ss_pred             ceEEEEEEEC-CcchHHHH-HHHHHH--------HHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe----
Q psy14042         29 ETGLIIVWML-YKPSYHRV-EQDVIR--------LHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK----   94 (238)
Q Consensus        29 ad~~IlV~dv-d~~s~~~~-~~~~~~--------l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~----   94 (238)
                      ++++++||++ |..+|..+ ..|...        +.......+.|+++|+||+|+...+   .++++.+++.++++    
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~  156 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEI  156 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhcc
Confidence            8888888988 89999887 667653        2222112679999999999998655   55677888887764    


Q ss_pred             ---EEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         95 ---FIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        95 ---~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                         ++++||++|.|++++|..|++.+.+.+
T Consensus       157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          157 DKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence               799999999999999999999887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.33  E-value=7.8e-13  Score=104.94  Aligned_cols=105  Identities=10%  Similarity=0.025  Sum_probs=76.2

Q ss_pred             cEEEECCeEEEEEEEe----CCCcc---------ccc-C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEK---------LTS-S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~---------l~~-~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      +.+.+++.  .+++||    +++..         .+. . ++|++++|||+ ++.+++. ..|+.++.+.. ..++|+++
T Consensus        45 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~il  120 (172)
T 2gj8_A           45 EHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITV  120 (172)
T ss_dssp             EEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEE
T ss_pred             EEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEE
Confidence            45677774  478999    32211         111 2 89999999999 8888774 56777777654 25799999


Q ss_pred             EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      |+||+||.....       .+++..+.+++++||++|.|++++|..|.+.+.
T Consensus       121 v~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          121 VRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             EEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             EEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            999999954211       112235678999999999999999999997764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.32  E-value=7.9e-13  Score=116.64  Aligned_cols=110  Identities=15%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEECC-----------cchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-----------KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI   71 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd-----------~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~   71 (238)
                      ..++++|||    ++||++|..   +++++|+|||+.           ..+|.....|+..+.......++|++|+|||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            458899999    899999987   999999999993           68899999999998776544789999999999


Q ss_pred             cCCCccc---------------ccHHHHHHHHH-hC--------------------------CCeEEEEccCCCCCHHHH
Q psy14042         72 DLARARA---------------VSSQDAKNLAA-SF--------------------------KVKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        72 DL~~~~~---------------v~~~~~~~~~~-~~--------------------------~~~~~evSA~t~~gv~el  109 (238)
                      ||..++.               ...+++.+++. .+                          ++.+++|||++..||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            9954221               12444433322 22                          367899999999999999


Q ss_pred             HHHHHHHHHh
Q psy14042        110 LVGILNQIRL  119 (238)
Q Consensus       110 f~~i~~~l~~  119 (238)
                      |..+.+.+..
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.31  E-value=2.2e-12  Score=99.80  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=70.1

Q ss_pred             EEEECCeEEEEEEEe----CCCc-------cccc---CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYE-------KLTS---SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA   68 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~-------~l~~---~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg   68 (238)
                      .+..++.  .+.+||    +++.       ..+.   .++|++|+|+|. +..+...  .++.++.+.   .+.|+++|+
T Consensus        43 ~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~  115 (161)
T 2dyk_A           43 VVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVA  115 (161)
T ss_dssp             EEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEE
T ss_pred             EEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEE
Confidence            3445553  688999    4421       1221   189999999999 6544432  333333222   468999999


Q ss_pred             EeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         69 NKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        69 NK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ||+|+...+    +++.+++ ..++ +++++||++|.|++++|..|++.+
T Consensus       116 nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          116 TKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            999997652    2334444 5677 799999999999999999998754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.28  E-value=6.2e-12  Score=111.16  Aligned_cols=106  Identities=21%  Similarity=0.229  Sum_probs=86.2

Q ss_pred             EEEEEEe--------CCCcccccC------CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEecc
Q psy14042         12 VRAIIWN--------EQYEKLTSS------DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKID   72 (238)
Q Consensus        12 v~l~iWD--------e~~~~l~~~------~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~D   72 (238)
                      ..+.|||        ++++.+...      .++++|+|+|+ +   +++++.+..|+.++..+... .++|++||+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            4689999        345445433      59999999999 7   89999999999999987642 6899999999999


Q ss_pred             CCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         73 LARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +...+    +..+++++.++  .+++++||+++.|++++|..|.+.+.+.+
T Consensus       286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence            97543    34566777766  78999999999999999999998886543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.27  E-value=7.5e-12  Score=114.48  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=83.6

Q ss_pred             cEEEECCeEEEEEEEe--------------CCCcccccC----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE
Q psy14042          3 QSLQGHSGKVRAIIWN--------------EQYEKLTSS----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA   64 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD--------------e~~~~l~~~----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi   64 (238)
                      +.+..++.  .++|||              |+|+.+...    ++|++|+|+|......+....|...+..    .++|+
T Consensus       236 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~----~~~~~  309 (456)
T 4dcu_A          236 TSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----AGKAV  309 (456)
T ss_dssp             EEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----TTCEE
T ss_pred             EEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH----cCCCE
Confidence            45666665  789999              223333221    7899999999933333444556666654    67999


Q ss_pred             EEEEEeccCCCcccccHHHHHHHHHhC-----CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         65 IIVANKIDLARARAVSSQDAKNLAASF-----KVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        65 ilVgNK~DL~~~~~v~~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +||+||+|+...+.+..+++.+.++..     +++++++||++|.|++++|..+.+.+....
T Consensus       310 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          310 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            999999999887777766666665543     589999999999999999999998886654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.25  E-value=1.5e-11  Score=107.00  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             EEEEEEEe----CCCc----------ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042         11 KVRAIIWN----EQYE----------KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus        11 ~v~l~iWD----e~~~----------~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      .+.+.+||    .++.          .....   ++|++++|+|. +..++.+...|+..+..    .+.|+++|+||+|
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~D  133 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKID  133 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGG
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECcc
Confidence            47889999    3333          11112   89999999999 88889988888888765    5789999999999


Q ss_pred             CCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         73 LARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +...+....+....+.+.++  .+++++||++|.|++++|..|.+.+.+.
T Consensus       134 l~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          134 KIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             GSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            98555666677788888876  7899999999999999999999887543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.25  E-value=1.2e-11  Score=99.10  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHH-HHHhCCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKN-LAASFKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~-~~~~~~~~~~evSA~t~  103 (238)
                      .+|++++|+|+ +..++.... +...+..    .+.|+++|+||+|+...+++..  +++.+ ++...+++++++||++|
T Consensus       105 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  179 (195)
T 1svi_A          105 ELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK  179 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred             cCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCC
Confidence            44999999999 777777643 2233333    6789999999999987665543  33333 33345789999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy14042        104 HNVDELLVGILNQIR  118 (238)
Q Consensus       104 ~gv~elf~~i~~~l~  118 (238)
                      .|++++|..|.+.+.
T Consensus       180 ~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          180 KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999997763

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.25  E-value=1.1e-11  Score=105.25  Aligned_cols=100  Identities=14%  Similarity=0.094  Sum_probs=78.3

Q ss_pred             EEEEEEEe----CCCcccc------c-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEKLT------S-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~------~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.+.+||    +.|+..+      .     .++|++|+|+|. +.++.   ..|..++..    .+.|+++|+||+|+.
T Consensus        51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEA  123 (258)
T ss_dssp             TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHH
T ss_pred             CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCC
Confidence            37899999    5555422      1     279999999999 65443   346666654    579999999999997


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+.. +...+++.++++++++||++|.|++++|..+.+.+.
T Consensus       124 ~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          124 KKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            6555543 467888889999999999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.23  E-value=7.7e-12  Score=107.18  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=78.8

Q ss_pred             EECCeEEEEEEEe----CCCcc------cccC-----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042          6 QGHSGKVRAIIWN----EQYEK------LTSS-----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN   69 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~------l~~~-----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgN   69 (238)
                      .++. .+.+++||    ++|..      +...     ++|++|+|+|. +.++   ...|..++..    .+.|+++|+|
T Consensus        44 ~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~N  115 (272)
T 3b1v_A           44 LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALN  115 (272)
T ss_dssp             ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEE
T ss_pred             EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEE
Confidence            3444 56799999    55542      2221     69999999999 6443   3456666665    5799999999


Q ss_pred             eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      |+|+...+.+. .+...+++.++++++++||++|.|++++|..|++.+
T Consensus       116 K~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          116 MIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             CHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             ChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            99997655554 356778888899999999999999999999998654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.21  E-value=2.6e-11  Score=109.74  Aligned_cols=144  Identities=13%  Similarity=0.078  Sum_probs=108.5

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .++.++.++|+.+.++..+..|..++..+... ...|.+||+||+|+...  ...+++.+.++..+++++.+||++++|+
T Consensus       235 ra~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          235 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            68999999999767888888888888776421 46899999999999765  2233455556667889999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEEE
Q psy14042        107 DELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFA  182 (238)
Q Consensus       107 ~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g  182 (238)
                      ++++..|.+.+.+.+..... .    ....   ......+.+....+|. ++.|+.+++ ++.+++|+.++++.+|.
T Consensus       313 ~eL~~~i~~~l~~~~~~~~~-~----~~~~---~~~~~~~~i~~~~~~~~~v~g~~~~~-~~~~~~~~~~~~~~~~~  380 (416)
T 1udx_A          313 PALKEALHALVRSTPPPEMP-K----PVPR---KEVQAGVEVVPVAEGVYEVRAPEVER-YLARIKGDLMEAAGYLQ  380 (416)
T ss_dssp             HHHHHHHHHHHHTSCCCCCC-C----CCC-------CCCCEEEEEETTEEEEECHHHHH-HHTTEEECTGGGHHHHH
T ss_pred             HHHHHHHHHHHHhccccccc-c----cccc---cccCCCcEEEEcCCCeEEEeChHHHH-HHHhcCCCCHHHHHHHH
Confidence            99999999999876543211 0    0111   1122356666666777 999999999 99999999999986664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.18  E-value=4.8e-11  Score=108.54  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=81.8

Q ss_pred             cEEEECCeEEEEEEEe----C----------CCccccc---C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC
Q psy14042          3 QSLQGHSGKVRAIIWN----E----------QYEKLTS---S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP   63 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e----------~~~~l~~---~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p   63 (238)
                      +.+..++.  .++|||    .          +|+.+..   . ++|++|+|+|+ +..++++. .|...+..    .++|
T Consensus       216 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~  288 (436)
T 2hjg_A          216 TSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKA  288 (436)
T ss_dssp             EEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCE
T ss_pred             EEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCc
Confidence            35566665  488999    2          2222222   1 89999999999 87888776 47777654    6799


Q ss_pred             EEEEEEeccCCCcccccHHHHH-HHHH----hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         64 AIIVANKIDLARARAVSSQDAK-NLAA----SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        64 iilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +++|+||+|+...+.+..++.. .+.+    ..+++++++||++|.|++++|..+.+.+....
T Consensus       289 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          289 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             EEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            9999999999876655443332 2222    34689999999999999999999998876543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.17  E-value=8.2e-11  Score=93.70  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--cccHHHHHHHHHhC-CCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--AVSSQDAKNLAASF-KVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~v~~~~~~~~~~~~-~~~~~evSA~t~  103 (238)
                      +++++++|+|. +..+.... .+...+..    .+.|+++|+||+|+....  ....+++..++... +++++++||++|
T Consensus       104 ~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  178 (195)
T 3pqc_A          104 SLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG  178 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred             CceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence            56999999998 54333322 22222322    369999999999997543  34455667777764 479999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy14042        104 HNVDELLVGILNQIR  118 (238)
Q Consensus       104 ~gv~elf~~i~~~l~  118 (238)
                      .|++++|+.|.+.+.
T Consensus       179 ~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          179 EGISELLDLISTLLK  193 (195)
T ss_dssp             TTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998774

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.15  E-value=1.7e-10  Score=102.14  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             CceEEEEEEEC-Ccc--hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKP--SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~--s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      .+|++++|+|+ +..  +++....|+.++....  .+.|+++|+||+|+.....+  +++..+++..+++++++||++|+
T Consensus       246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~  321 (357)
T 2e87_A          246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGT  321 (357)
T ss_dssp             TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTB
T ss_pred             cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCc
Confidence            69999999998 666  7888889999988764  38999999999999865543  44566677788999999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy14042        105 NVDELLVGILNQIRLK  120 (238)
Q Consensus       105 gv~elf~~i~~~l~~~  120 (238)
                      |++++|..|.+.+...
T Consensus       322 gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          322 GIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.13  E-value=4.1e-11  Score=108.73  Aligned_cols=108  Identities=18%  Similarity=0.116  Sum_probs=83.1

Q ss_pred             EEEECCeEEEEEEEe----CCCccccc--------C--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTS--------S--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN   69 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~--------~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgN   69 (238)
                      .++.++. ..+.+||    +.|..+..        .  ++|++|+|+|.  ........|+..+.+    .+.|+++|+|
T Consensus        76 ~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~----~~~piIvV~N  148 (423)
T 3qq5_A           76 SMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE----MEIPFVVVVN  148 (423)
T ss_dssp             EEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH----TTCCEEEECC
T ss_pred             EEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh----cCCCEEEEEe
Confidence            4445443 2789999    66665522        1  89999999998  222344678888776    4799999999


Q ss_pred             eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      |+|+...+..  +..+.+++.++++++++||++|.|++++|..|.+.+.+.
T Consensus       149 K~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          149 KIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             CcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            9999876554  556667777899999999999999999999999988554

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.09  E-value=6.8e-11  Score=100.28  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=73.6

Q ss_pred             EEECCeEEEEEEEe----CCCccc----------cc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKL----------TS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA   64 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l----------~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi   64 (238)
                      +..++.  .+.+||    ..+...          ..     .++|++|+|+|. +.+++..+   ...+..    .+.|+
T Consensus        43 ~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~~----~~~pv  113 (256)
T 3iby_A           43 FLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLFE----LGKPV  113 (256)
T ss_dssp             EEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHTT----SCSCE
T ss_pred             EEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHHH----cCCCE
Confidence            445553  789999    444431          11     279999999999 75554433   333332    47999


Q ss_pred             EEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        65 ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ++|+||+|+...+.+.. ....+++.++++++++||++|.|++++|..|.+.
T Consensus       114 ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          114 VVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             EEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            99999999975544332 2455777889999999999999999999999865

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.07  E-value=5.9e-10  Score=102.54  Aligned_cols=108  Identities=11%  Similarity=0.041  Sum_probs=74.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCccc----------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKL----------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l----------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      +.+.+++  +.+.+||    ++++.+          ... ++|++|+|+|. +..+++.+..+..-+...   .+.|+++
T Consensus       274 ~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIv  348 (476)
T 3gee_A          274 ECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLT  348 (476)
T ss_dssp             EEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEE
T ss_pred             EEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEE
Confidence            3456666  5789999    334322          122 89999999999 887776433333323222   3799999


Q ss_pred             EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      |+||+|+........   +.+.+....+++++||++|.|++++|..|.+.+.
T Consensus       349 V~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          349 VANKLDRAANADALI---RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECcCCCCccchhH---HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999986654422   3344432378999999999999999999998886

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.05  E-value=4.6e-11  Score=97.55  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=68.8

Q ss_pred             EEEEEEEe----CCCcccccC---C----ceEEEEEEEC--CcchHHHHHHHHHHHHHhc---CCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---D----ETGLIIVWML--YKPSYHRVEQDVIRLHEEG---YLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~----ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~   74 (238)
                      .+.+.+||    ++|+.++..   +    ++++|+|||+  ++++|..+..|+.++....   ...+.|+++|+||+|+.
T Consensus        54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  133 (218)
T 1nrj_B           54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  133 (218)
T ss_dssp             GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence            35789999    677665544   4    8999999999  5689999999998887653   23689999999999998


Q ss_pred             Cccccc------HHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         75 RARAVS------SQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        75 ~~~~v~------~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ..+.+.      .+++..++...+++|+++||++|.+
T Consensus       134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          134 TARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            766554      4566777777788999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.05  E-value=4.5e-10  Score=95.59  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             EEECCeEEEEEEEe----CCCcc------ccc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042          5 LQGHSGKVRAIIWN----EQYEK------LTS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA   68 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~------l~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg   68 (238)
                      +..++  ..+.+||    +.|..      +..     .++|++++|+|. +.   +....|..++...   ...|+++|+
T Consensus        45 ~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~  116 (271)
T 3k53_A           45 MEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVL  116 (271)
T ss_dssp             EEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEE
T ss_pred             EEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEE
Confidence            34445  3589999    44444      121     279999999998 53   3334455555542   339999999


Q ss_pred             EeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        69 NK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ||+|+...+.+... ...+++.++++++++||++|.|++++|..+.+.+...
T Consensus       117 NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          117 NKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             ECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            99999755544432 6778888899999999999999999999999887544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.04  E-value=8e-10  Score=90.32  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=62.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHH-HHHh------CCCeEEE
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKN-LAAS------FKVKFIE   97 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~-~~~~------~~~~~~e   97 (238)
                      .+|++|+|+|. +..+ .....|+..+..    .+.|+++|+||+|+...+.+..  ++..+ +...      .+.++++
T Consensus       115 ~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  189 (223)
T 4dhe_A          115 QLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL  189 (223)
T ss_dssp             TEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEE
Confidence            58999999999 5433 223445555544    5789999999999976544322  22222 2332      5678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhh
Q psy14042         98 VSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        98 vSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +||++|.|++++|..|.+.+...
T Consensus       190 ~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          190 FSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHC--
T ss_pred             eecCCCcCHHHHHHHHHHhcCcc
Confidence            99999999999999999887543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.02  E-value=2.8e-10  Score=97.33  Aligned_cols=83  Identities=19%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++|+|+|. +.+++   ..|...+..    .+.|+++|+||+|+...+.+.. ....+++.++++++++||++|.|+
T Consensus        85 ~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi  156 (274)
T 3i8s_A           85 DADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGI  156 (274)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHH
T ss_pred             CCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCH
Confidence            89999999999 64443   445555554    3699999999999975444322 346677888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      +++|..|.+.+.
T Consensus       157 ~el~~~i~~~~~  168 (274)
T 3i8s_A          157 EALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHh
Confidence            999999986543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.01  E-value=3.9e-09  Score=97.25  Aligned_cols=105  Identities=12%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             cEEEECCeEEEEEEEe----C-CCccc---------cc-C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          3 QSLQGHSGKVRAIIWN----E-QYEKL---------TS-S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e-~~~~l---------~~-~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      +.+.+++  +.+.+||    + ++...         .. . ++|++|+|+|. +..++++..- ++.+      .+.|++
T Consensus       284 ~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------~~~pii  354 (482)
T 1xzp_A          284 EEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI------KNKRYL  354 (482)
T ss_dssp             EEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEE
T ss_pred             EEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh------cCCCEE
Confidence            4567776  4689999    4 44321         11 1 89999999999 7778876432 2222      468999


Q ss_pred             EEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         66 IVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        66 lVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      +|+||+||...  +..+++..++. .+++++++||++|.|++++|..|.+.+..
T Consensus       355 vV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          355 VVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             EEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             EEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            99999999753  33444444432 45789999999999999999999987663

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.00  E-value=1.2e-09  Score=103.17  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+.++|||    ++|......   .+|++|+|+|. +..+++....|...+.     .+.|+++|+||+|+...+  
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--  139 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--  139 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--
Confidence            56678999999    666554433   89999999999 7777777777765542     468999999999997643  


Q ss_pred             cHHHHHHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+...++.+.+++.   ++++||++|.|++++|+.|++.++.
T Consensus       140 ~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          140 PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            233455666667764   9999999999999999999987643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.99  E-value=9.9e-10  Score=98.85  Aligned_cols=105  Identities=23%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--   80 (238)
                      ...+.+||    ++|......   ++|++|+|+|. +..++.....|+..+...   ...|+++|+||+|+.......  
T Consensus        74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~  150 (403)
T 3sjy_A           74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQ  150 (403)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHH
Confidence            37899999    667655443   99999999999 666688888888776653   336899999999997654322  


Q ss_pred             HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         81 SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        81 ~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .++..++.+..   +++++++||++|.|++++|+.|.+.+.
T Consensus       151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            23344444333   578999999999999999999987664

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.97  E-value=1.5e-09  Score=102.31  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++..+.++|||    ++|......   .+|++|+|+|. +..+++....|...+.     .+.|+++|+||+|+...+  
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--  141 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--  141 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--
Confidence            45678999999    666544433   89999999999 7777887777765432     578999999999997643  


Q ss_pred             cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+...++++.+++   +++++||++|.|++++|+.|++.++.
T Consensus       142 ~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          142 VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            23345566666776   49999999999999999999987643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.91  E-value=9.3e-10  Score=95.45  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             EEEEEEEe----CCC--------cccccC---CceEEEEEEEC-CcchHHHHHHHH-HHHHHhcCCCCCCEEEEEEeccC
Q psy14042         11 KVRAIIWN----EQY--------EKLTSS---DETGLIIVWML-YKPSYHRVEQDV-IRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus        11 ~v~l~iWD----e~~--------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~-~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+||    .++        ......   ++|++++|+|. +..+..  ..|+ ..+.+..  .+.|+++|+||+|+
T Consensus        54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl  129 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDA  129 (301)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGG
T ss_pred             CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECccc
Confidence            47899999    332        222211   89999999999 654444  3444 4454432  47999999999999


Q ss_pred             CCcccccHHHHHHHHHh-CC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAAS-FK-VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~-~~-~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...+..    ....++. .+ .+++++||++|.|++++|..|.+.+.
T Consensus       130 ~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          130 AKYPEE----AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             CSSHHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             CCchHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence            754330    1222222 23 57999999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.89  E-value=1.1e-08  Score=92.88  Aligned_cols=88  Identities=16%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH-HHHH----hCCCeEEEEccC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK-NLAA----SFKVKFIEVSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~evSA~  101 (238)
                      .+|++++|+|. +..++++. .+...+..    .++|+++|+||+|+...+....++.. .+.+    ..+.+++++||+
T Consensus       263 ~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  337 (439)
T 1mky_A          263 KADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD  337 (439)
T ss_dssp             HCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred             hCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence            68999999999 66666642 23333333    57999999999999865554433332 2222    335789999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy14042        102 IHHNVDELLVGILNQIRLK  120 (238)
Q Consensus       102 t~~gv~elf~~i~~~l~~~  120 (238)
                      +|.|++++|..+.+.+...
T Consensus       338 ~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          338 KGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999877654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=1.4e-09  Score=96.90  Aligned_cols=94  Identities=13%  Similarity=0.090  Sum_probs=71.2

Q ss_pred             EeCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---ccHHHHHHHHH
Q psy14042         17 WNEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNLAA   89 (238)
Q Consensus        17 WDe~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~   89 (238)
                      -+|+|+++...   .++++++|+|+ |..     ..|..++.++.  .+.|+++|+||+||.....   ...+....+++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence            33788887766   78899999999 642     56777777765  5899999999999965432   11223344567


Q ss_pred             hCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         90 SFKV---KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        90 ~~~~---~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..|+   +++++||++|+|+++++..+.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            7787   799999999999999999987654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.88  E-value=4.1e-09  Score=93.99  Aligned_cols=104  Identities=13%  Similarity=-0.003  Sum_probs=78.8

Q ss_pred             EEEEEEEe----CCCccccc-C--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE-EEEEE-eccCCCcccccH
Q psy14042         11 KVRAIIWN----EQYEKLTS-S--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA-IIVAN-KIDLARARAVSS   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~-~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgN-K~DL~~~~~v~~   81 (238)
                      ..++.|||    ++|..... .  .+|++|+|+| +...+...+.++..+..    .+.|. +++.| |+|+ ..+.+..
T Consensus        59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~  132 (370)
T 2elf_A           59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDE  132 (370)
T ss_dssp             SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHH
Confidence            35699999    66643332 2  9999999999 87777777777777655    45787 89999 9999 5433322


Q ss_pred             --HHHHHHHHhCC---CeEEE--EccCC---CCCHHHHHHHHHHHHHhh
Q psy14042         82 --QDAKNLAASFK---VKFIE--VSVGI---HHNVDELLVGILNQIRLK  120 (238)
Q Consensus        82 --~~~~~~~~~~~---~~~~e--vSA~t---~~gv~elf~~i~~~l~~~  120 (238)
                        ++++++++..+   +++++  +||++   +.|+++++..|.+.+...
T Consensus       133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence              45666665543   68999  99999   999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.88  E-value=4.9e-09  Score=94.43  Aligned_cols=101  Identities=24%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA   78 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~   78 (238)
                      ...+.+||    ++|......   .+|++|+|+|. +.    ++++.+.    .+...   ...|+++|+||+|+.....
T Consensus        80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l---~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL---GIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT---TCCCEEEEEECTTSSCTTT
T ss_pred             ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc---CCCeEEEEEEccCCCCHHH
Confidence            37899999    666544333   78999999999 43    2333332    22221   3358999999999976543


Q ss_pred             --ccHHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         79 --VSSQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        79 --v~~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                        ...+++.++++.   .+++++++||++|.|++++++.|.+.+.
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence              234566677665   3678999999999999999999987654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.87  E-value=4.6e-09  Score=96.77  Aligned_cols=99  Identities=20%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--   78 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--   78 (238)
                      ..+.+||    ++|......   .+|++|+|+|. +   +++++.+    ..+..    .++|+++|+||+|+.....  
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~----~~ip~IvviNK~Dl~~~~~~~  144 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH----FNIPIIVVITKSDNAGTEEIK  144 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH----TTCCBCEEEECTTSSCHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH----cCCCEEEEEECCCcccchhHH
Confidence            6799999    566443322   89999999999 5   3444433    23333    4688899999999976422  


Q ss_pred             ccHHHHHHHHHhC----CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         79 VSSQDAKNLAASF----KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        79 v~~~~~~~~~~~~----~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...+++..+++..    +++++++||++|.|++++++.|.+.+.
T Consensus       145 ~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          145 RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            2234556666655    578999999999999999999999876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.87  E-value=4.9e-09  Score=95.30  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=72.3

Q ss_pred             cEEEECCeEEEEEEEe----CCC---------cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQY---------EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~---------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      +.+++++.  .+++||    +.+         +..+..   ++|++|+|+|. +..++.+  .++.++.+.   .+.|++
T Consensus        42 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~i  114 (439)
T 1mky_A           42 DTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTI  114 (439)
T ss_dssp             EEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEE
T ss_pred             EEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEE
Confidence            34566664  568999    332         112222   99999999999 6555443  233333222   468999


Q ss_pred             EEEEeccCCCcccccHHHH-HHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         66 IVANKIDLARARAVSSQDA-KNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        66 lVgNK~DL~~~~~v~~~~~-~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ||+||+|+...  . ..+. .++. ..++ +++++||++|.|++++|+.+++.+.+.
T Consensus       115 lv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          115 LVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             EEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            99999998532  1 1222 3333 4566 689999999999999999999988754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.85  E-value=8.1e-09  Score=94.62  Aligned_cols=105  Identities=13%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcc----------cccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEK----------LTSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~----------l~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      +.+.+++  +.+.+||    ..+..          .... ++|++|+|+|. +..++.. ..|+..+      .+.|+++
T Consensus       265 ~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piiv  335 (462)
T 3geh_A          265 SQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLIL  335 (462)
T ss_dssp             HEEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEE
T ss_pred             EEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEE
Confidence            4567777  4568999    22221          1112 89999999999 7666554 4454444      3379999


Q ss_pred             EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      |+||+|+.....+.  ....+  ..+.+++++||++|.|++++|..|.+.+...
T Consensus       336 V~NK~Dl~~~~~~~--~~~~~--~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          336 VMNKIDLVEKQLIT--SLEYP--ENITQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             EEECTTSSCGGGST--TCCCC--TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             EEECCCCCcchhhH--HHHHh--ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            99999998665443  11111  1356899999999999999999999887543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.85  E-value=1.2e-08  Score=90.73  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             cEEEECCeEEEEEEEe-CC------------CcccccC--CceEEEEEEEC-Ccc--hHHHHHHHHHHHHHhcCCCCCCE
Q psy14042          3 QSLQGHSGKVRAIIWN-EQ------------YEKLTSS--DETGLIIVWML-YKP--SYHRVEQDVIRLHEEGYLRTRPA   64 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD-e~------------~~~l~~~--~ad~~IlV~dv-d~~--s~~~~~~~~~~l~~~~~~~~~pi   64 (238)
                      +.+.+++  ..+.+|| --            |+.....  .+|++++|+|+ ++.  +++.+..|...+.... ..+.|+
T Consensus       219 ~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~  295 (364)
T 2qtf_A          219 YAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPI  295 (364)
T ss_dssp             EEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCE
T ss_pred             EEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCE
Confidence            4677777  4578999 22            2222222  89999999999 665  5666666666555442 367899


Q ss_pred             EEEEEeccCCCccccc-HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         65 IIVANKIDLARARAVS-SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        65 ilVgNK~DL~~~~~v~-~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ++|+||+|+....... .+.+..++...   +.+++++||+++.|+++++..|.+.+....
T Consensus       296 ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          296 LVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             EEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            9999999997543111 12233334444   347899999999999999999998776544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.83  E-value=5.7e-10  Score=99.17  Aligned_cols=110  Identities=10%  Similarity=0.099  Sum_probs=67.8

Q ss_pred             EECCeEEEEEEEe-----------CCCccccc-------C---Cc-----------eEEEEEEEC-C-cchHHHHH-HHH
Q psy14042          6 QGHSGKVRAIIWN-----------EQYEKLTS-------S---DE-----------TGLIIVWML-Y-KPSYHRVE-QDV   50 (238)
Q Consensus         6 ~~~~~~v~l~iWD-----------e~~~~l~~-------~---~a-----------d~~IlV~dv-d-~~s~~~~~-~~~   50 (238)
                      ..++..+.+.|||           ++|+.+..       .   ++           ++-+++|++ + ..++..+. .|+
T Consensus        89 ~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~  168 (361)
T 2qag_A           89 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM  168 (361)
T ss_dssp             ---CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHH
T ss_pred             ecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHH
Confidence            3456678999999           34666654       1   22           233467777 4 56776665 344


Q ss_pred             HHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         51 IRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        51 ~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+   .  .++|+|+|+||+|+...+++..  +++..+++..++++|++||+++.| ++.|..+.+.+....
T Consensus       169 ~~l---~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          169 KAI---H--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHT---C--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHh---c--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            433   2  6799999999999988776655  577788888899999999999999 999999998887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.83  E-value=2.2e-09  Score=96.56  Aligned_cols=108  Identities=18%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcc
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARAR   77 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~   77 (238)
                      .++.....+.|||    ++|......   .+|++|+|+|.....+.....++..+..    .++| +++|+||+|+....
T Consensus        69 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~  144 (405)
T 2c78_A           69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFMNKVDMVDDP  144 (405)
T ss_dssp             EEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCH
T ss_pred             EeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEECccccCcH
Confidence            3444457789999    667554433   8999999999933334445666666654    4678 89999999997532


Q ss_pred             cc---cHHHHHHHHHhCC-----CeEEEEccCCCCC------------------HHHHHHHHHHHH
Q psy14042         78 AV---SSQDAKNLAASFK-----VKFIEVSVGIHHN------------------VDELLVGILNQI  117 (238)
Q Consensus        78 ~v---~~~~~~~~~~~~~-----~~~~evSA~t~~g------------------v~elf~~i~~~l  117 (238)
                      +.   ..++++.+++..+     ++++++||++|.|                  ++++++.|.+.+
T Consensus       145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence            21   2335666777665     6899999999987                  667776666544

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.82  E-value=4.9e-08  Score=92.05  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=70.9

Q ss_pred             EEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-
Q psy14042         13 RAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-   80 (238)
Q Consensus        13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-   80 (238)
                      .+.+||    +.|..++..   .+|++|+|+|. +   +++++.+..    +..    .++|+++|+||+|+....... 
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~  142 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHE  142 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEeccccccccccccc
Confidence            589999    888887765   79999999999 6   667765542    332    578999999999996421100 


Q ss_pred             ------------H---H-------HHHHHHHhC---------------CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         81 ------------S---Q-------DAKNLAASF---------------KVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        81 ------------~---~-------~~~~~~~~~---------------~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                                  .   +       +......+.               .++++++||++|.|+++++..|...+..
T Consensus       143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                        0   0       111111111               2379999999999999999999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.78  E-value=8.2e-08  Score=87.33  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcch----HH---HHHHHHHHHHHhcCCCCCC-EEEEEEeccCCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS----YH---RVEQDVIRLHEEGYLRTRP-AIIVANKIDLAR   75 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s----~~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~   75 (238)
                      ...+.|||    ++|......   ++|++|+|+|.+...    |+   ..+..+..+..    .++| +++|+||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence            35899999    777655443   899999999993322    22   22222222222    4566 999999999953


Q ss_pred             c------ccccHHHHHHHHHhCC------CeEEEEccCCCCCHHHHHH
Q psy14042         76 A------RAVSSQDAKNLAASFK------VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        76 ~------~~v~~~~~~~~~~~~~------~~~~evSA~t~~gv~elf~  111 (238)
                      .      .+...+++..+++..+      ++++++||++|.|+++++.
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2      1112234555555554      4799999999999999765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.77  E-value=1.1e-08  Score=92.85  Aligned_cols=98  Identities=18%  Similarity=0.111  Sum_probs=68.2

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-c-c--
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-A-V--   79 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-~-v--   79 (238)
                      ...+.|||    ++|......   .+|++|+|+|.....+.....++..+...   .-.|+++|+||+|+.... + +  
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHH
Confidence            46789999    677554433   99999999999333333444455444432   223699999999997521 1 1  


Q ss_pred             cHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042         80 SSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        80 ~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~  111 (238)
                      ..++...+++..+     ++++++||++|.|++++|.
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            2345667777777     6899999999999998543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.77  E-value=1.2e-08  Score=91.90  Aligned_cols=101  Identities=20%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA   78 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~   78 (238)
                      ...+.+||    ++|......   .+|++|+|+|. +.    ++++.+.    .+...   ...|+++|+||+|+.....
T Consensus        82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~---~~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII---GQKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred             ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc---CCCcEEEEEECccCCCHHH
Confidence            37899999    556443322   77999999999 43    2333333    22222   3368999999999986543


Q ss_pred             --ccHHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         79 --VSSQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        79 --v~~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                        ...+++..+++.   .+++++++||++|.|++++++.|.+.+.
T Consensus       155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence              223455566554   3678999999999999999999987654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.77  E-value=4.6e-09  Score=94.29  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccc-
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARA-   78 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~-   78 (238)
                      .....+.|||    ++|......   .+|++|+|+|. +....+.. .++..+..    .++| +++|+||+|+....+ 
T Consensus        63 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~  137 (397)
T 1d2e_A           63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEM  137 (397)
T ss_dssp             CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHH
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHH
Confidence            3346789999    566543322   89999999999 54333333 33344443    4688 789999999975322 


Q ss_pred             --ccHHHHHHHHHhCC-----CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q psy14042         79 --VSSQDAKNLAASFK-----VKFIEVSVGIHHN----------VDELLVGILNQIR  118 (238)
Q Consensus        79 --v~~~~~~~~~~~~~-----~~~~evSA~t~~g----------v~elf~~i~~~l~  118 (238)
                        ...++++++++..+     ++++++||++|.|          ++++++.|.+.+.
T Consensus       138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence              12346667777765     5899999999764          8888888876653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.76  E-value=8.4e-09  Score=94.91  Aligned_cols=99  Identities=9%  Similarity=-0.006  Sum_probs=61.6

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHH------HHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHR------VEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~------~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      ++...+.+.|||    ++|......   ++|++|+|+|. +..++..      .......+.. .  ...|+|||+||+|
T Consensus       106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~--~~~~iIvviNK~D  182 (483)
T 3p26_A          106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L--GIHNLIIAMNKMD  182 (483)
T ss_dssp             EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T--TCCCEEEEEECGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c--CCCcEEEEEECcC
Confidence            344457899999    677655443   99999999999 5443322      1222222222 1  3357999999999


Q ss_pred             CCCcccccHH----HHHHHHHhC-----CCeEEEEccCCCCCHHH
Q psy14042         73 LARARAVSSQ----DAKNLAASF-----KVKFIEVSVGIHHNVDE  108 (238)
Q Consensus        73 L~~~~~v~~~----~~~~~~~~~-----~~~~~evSA~t~~gv~e  108 (238)
                      +...++...+    ++..+.+..     +++++++||++|.|+++
T Consensus       183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            9764333322    333333333     46899999999999985

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.76  E-value=2.2e-08  Score=93.14  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ..+.+.|||    ++|...+..   .+|++|+|+|. +..+.+....|. .+..    .++|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence            347899999    677665543   89999999999 766666665553 3333    5789999999999964

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.76  E-value=4.4e-09  Score=93.70  Aligned_cols=96  Identities=11%  Similarity=0.080  Sum_probs=69.9

Q ss_pred             EEEeCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---ccHHHHHHH
Q psy14042         15 IIWNEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNL   87 (238)
Q Consensus        15 ~iWDe~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~   87 (238)
                      .+-+|+|+++...   +++++++|+|+ |..+     .|..++.++.  .+.|+++|+||+||.....   ...+.....
T Consensus        55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~  127 (369)
T 3ec1_A           55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM  127 (369)
T ss_dssp             ----CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence            3444888887766   78899999999 7653     4666666664  5899999999999975422   122334445


Q ss_pred             HHhCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         88 AASFKV---KFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        88 ~~~~~~---~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ++..|.   +++.+||++|+|+++++..+.+..
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            667776   799999999999999999987654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.75  E-value=1.7e-09  Score=98.36  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=71.7

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcC---CCC-CCEEEEEEeccCCCcc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGY---LRT-RPAIIVANKIDLARAR   77 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~---~~~-~piilVgNK~DL~~~~   77 (238)
                      ...+.+.|||    ++|......   .+|++|+|+|....+|+....|..+.+++..   ..+ .|+++|+||+|+....
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            3446799999    777654433   9999999999944889876554433332210   124 4699999999997621


Q ss_pred             ------cccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042         78 ------AVSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        78 ------~v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~  111 (238)
                            ....++++.+++..+     ++++++||++|.|+.+++.
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  223456777777765     6899999999999986654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.73  E-value=3.6e-08  Score=85.31  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv  106 (238)
                      .+|++++|+|...  +.....|+.+...   ..+.|+++|+||+|+...+....+.+..+++.+++ .++++||+++.|+
T Consensus        88 ~~D~vl~Vvd~~~--~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A           88 DVELVIFVVEGTR--WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             CEEEEEEEEETTC--CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             cCCEEEEEEeCCC--CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence            8999999999932  4444445554333   15799999999999986333344556667777776 7999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      +++++.+.+.+.
T Consensus       163 ~~l~~~i~~~l~  174 (301)
T 1ega_A          163 DTIAAIVRKHLP  174 (301)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.72  E-value=2.9e-09  Score=99.14  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             EEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-cHHH
Q psy14042         13 RAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-SSQD   83 (238)
Q Consensus        13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-~~~~   83 (238)
                      .+.+||    +.|..++..   .+|++|+|+|. +....+... .+..+..    .+.|+++|+||+|+...... ...+
T Consensus        53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~  127 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKE  127 (537)
T ss_dssp             CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHH
Confidence            688999    788887765   89999999999 544444333 3333332    57899999999999743211 1112


Q ss_pred             HHHH---HHhC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         84 AKNL---AASF--KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        84 ~~~~---~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...+   +..+  .++++++||++|.|++++|..|...+.
T Consensus       128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            2211   1222  358999999999999999999987764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.69  E-value=1.5e-08  Score=83.39  Aligned_cols=97  Identities=7%  Similarity=-0.010  Sum_probs=66.0

Q ss_pred             CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHH---hcC-CCCCCEEEEEEec-cCCCcccccHHHHHHHHH
Q psy14042         19 EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHE---EGY-LRTRPAIIVANKI-DLARARAVSSQDAKNLAA   89 (238)
Q Consensus        19 e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~---~~~-~~~~piilVgNK~-DL~~~~~v~~~~~~~~~~   89 (238)
                      +++|.+|..   ++|++|+|.|. |++.++ .+..+.++..   ... ..++|++|++||. |++.  ..+..++.....
T Consensus       113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~  189 (227)
T 3l82_B          113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELH  189 (227)
T ss_dssp             ----CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcC
Confidence            577888877   99999999999 886655 4444433322   221 2689999999996 7753  344444433221


Q ss_pred             ----hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         90 ----SFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        90 ----~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                          ...+.++.|||.+|+|+.+.++||++.+.
T Consensus       190 L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          190 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence                24567899999999999999999986653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.65  E-value=3e-10  Score=93.33  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=47.2

Q ss_pred             CCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         62 RPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        62 ~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .|.++|+||+|+...+.+..+++..+++..  +++++++||++|.|++++|..|.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            566999999999765545666677766653  6799999999999999999999987754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.64  E-value=1.5e-08  Score=101.19  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=74.6

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccc
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARA   78 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~   78 (238)
                      ++.....+.|||    ++|......   .+|++|+|+|.+...+.....++..+..    .++| +|+|+||+|+....+
T Consensus       354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e  429 (1289)
T 3avx_A          354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEE  429 (1289)
T ss_dssp             EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHH
T ss_pred             EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH----cCCCeEEEEEeecccccchh
Confidence            344457889999    667544332   8999999999932223334445555544    4678 799999999985332


Q ss_pred             c---cHHHHHHHHHhCC-----CeEEEEccCCC--------CCHHHHHHHHHHHH
Q psy14042         79 V---SSQDAKNLAASFK-----VKFIEVSVGIH--------HNVDELLVGILNQI  117 (238)
Q Consensus        79 v---~~~~~~~~~~~~~-----~~~~evSA~t~--------~gv~elf~~i~~~l  117 (238)
                      .   ..+++..+++..+     ++++++||++|        .|++++++.|.+.+
T Consensus       430 ~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          430 LLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            2   2346677777765     68999999999        46888888887654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.63  E-value=9.7e-09  Score=88.98  Aligned_cols=82  Identities=7%  Similarity=0.039  Sum_probs=52.0

Q ss_pred             EEEECC--cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q psy14042         34 IVWMLY--KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASFKVKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        34 lV~dvd--~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~~~~evSA~t~~gv~el  109 (238)
                      ++|+..  ..+|+....  ..+++..  .+.|+++|+||.|+...+++  ..+++.++++.++++||++||+++ |++++
T Consensus       130 ll~ldePt~~~Ld~~~~--~~l~~l~--~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~  204 (301)
T 2qnr_A          130 CFYFISPFGHGLKPLDV--AFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDED  204 (301)
T ss_dssp             EEEEECSSSSSCCHHHH--HHHHHHT--TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------
T ss_pred             eeeeecCcccCCCHHHH--HHHHHHH--hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHH
Confidence            444442  334665542  3333333  56899999999999876554  356788889999999999999999 99999


Q ss_pred             HHHHHHHHHhh
Q psy14042        110 LVGILNQIRLK  120 (238)
Q Consensus       110 f~~i~~~l~~~  120 (238)
                      |..+++.+...
T Consensus       205 f~~l~~~i~~~  215 (301)
T 2qnr_A          205 FKEQTRLLKAS  215 (301)
T ss_dssp             CHHHHHHHHTT
T ss_pred             HHHHHHHhhcC
Confidence            99999888643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.63  E-value=4.4e-09  Score=97.19  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc--cc
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA--RA   78 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--~~   78 (238)
                      ..+.+||    +.|..++..   .+|++|+|+|. +   +++++.+    ..+..    .+.|+++++||+|+...  +.
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~  122 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDR  122 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHH
Confidence            3678999    888877765   89999999999 5   3444432    23332    57899999999999642  11


Q ss_pred             ccHH--HHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHH
Q psy14042         79 VSSQ--DAKNLAASFK--VKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        79 v~~~--~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      +..+  +...+++.++  ++++++||++|.|++++|+.|..
T Consensus       123 v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            1110  0001122333  78999999999999999999873

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.61  E-value=1.3e-08  Score=92.34  Aligned_cols=98  Identities=13%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             EEEEEEe----C--------CCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         12 VRAIIWN----E--------QYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        12 v~l~iWD----e--------~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ..+.+||    +        +++.++..   ++|++|+|+|. +..++.+  .++.++.+   ..+.|++||+||+|+..
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC--
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCcc
Confidence            4689999    2        33443333   89999999999 7666553  34444332   26789999999999965


Q ss_pred             cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         76 ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .+..    ..++. ..++ +++++||++|.|++++|+.+.+.+.+
T Consensus       126 ~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          126 MRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ---C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             chhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence            3211    11122 3455 78999999999999999999987754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.60  E-value=9.3e-09  Score=94.31  Aligned_cols=98  Identities=15%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCc---
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARA---   76 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~---   76 (238)
                      ..+.|||    ++|......   .+|++|+|+|. +.   .+|+...+|...+.... ..++| +|+|+||+|+...   
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCSSC
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCcccc
Confidence            5789999    778665543   89999999999 43   34443333333332211 15677 9999999999641   


Q ss_pred             c---cccHHHHHHHHHhC-------CCeEEEEccCCCCCHHHHH
Q psy14042         77 R---AVSSQDAKNLAASF-------KVKFIEVSVGIHHNVDELL  110 (238)
Q Consensus        77 ~---~v~~~~~~~~~~~~-------~~~~~evSA~t~~gv~elf  110 (238)
                      .   ....+++..+++..       +++++++||++|.|++++|
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1   12233566666655       4679999999999998866

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.60  E-value=7.6e-08  Score=91.92  Aligned_cols=65  Identities=9%  Similarity=0.035  Sum_probs=45.7

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..+....+.++|||    ++|......   .+|++++|+|. +..... ...++..+..    .+.|+++|+||+|+.
T Consensus        67 ~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           67 APLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             eEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            34444458899999    566554433   89999999999 543333 3355555554    579999999999987

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.58  E-value=3.5e-08  Score=90.29  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcc----hHH---HHHHHHHHHHHhcCCCCCC-EEEEEEeccC
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKP----SYH---RVEQDVIRLHEEGYLRTRP-AIIVANKIDL   73 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~----s~~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL   73 (238)
                      .....+.|||    ++|......   .+|++|+|+|....    +|+   .....+..+..    .++| +++|+||+|+
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl  157 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGG
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccc
Confidence            3447899999    666554332   99999999999433    231   23333333332    4565 9999999999


Q ss_pred             CCc-cc---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHH
Q psy14042         74 ARA-RA---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDEL  109 (238)
Q Consensus        74 ~~~-~~---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~el  109 (238)
                      ... .+   ...+++..+++..+     ++++++||++|.|++++
T Consensus       158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            731 11   22345666666655     68999999999999755

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.57  E-value=6.1e-08  Score=82.47  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             CceEEEEEEECCcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWMLYKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t~~  104 (238)
                      .+|+++++.+.....+.. -..++..+.     .++|+++|+||+|+....+...  +.+.+.....+++++++||++++
T Consensus       115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~-----~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~  189 (274)
T 3t5d_A          115 RVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE  189 (274)
T ss_dssp             CCCEEEEEECSCCSSCCHHHHHHHHHHT-----TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC------
T ss_pred             ceeEEEEEecCCCCCCCHHHHHHHHHHh-----ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCCh
Confidence            467888877652222222 233444442     2799999999999975444322  34555666789999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy14042        105 NVDELLVGILNQ  116 (238)
Q Consensus       105 gv~elf~~i~~~  116 (238)
                      |+++++..|.+.
T Consensus       190 ~~~~l~~~l~~~  201 (274)
T 3t5d_A          190 EENKLVKKIKDR  201 (274)
T ss_dssp             -----CHHHHHT
T ss_pred             hHHHHHHHHhcC
Confidence            999999988754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.50  E-value=3.1e-08  Score=93.75  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=63.1

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHH----HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYH----RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA   78 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~----~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~   78 (238)
                      ..+++.|||    ++|......   ++|++|+|+|.....|+    ...++...+.........|+|||+||+|+...++
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            346889999    777654433   99999999999443222    1122222222111113345999999999976332


Q ss_pred             cc----HHHHHHHHHhC-----CCeEEEEccCCCCCHHHHH
Q psy14042         79 VS----SQDAKNLAASF-----KVKFIEVSVGIHHNVDELL  110 (238)
Q Consensus        79 v~----~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf  110 (238)
                      ..    .+++..+++..     +++++++||++|.|++++.
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            22    22344444444     3589999999999998763

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.46  E-value=1e-07  Score=81.88  Aligned_cols=97  Identities=7%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHH---HHHhcC-CCCCCEEEEEEe-ccCCCcccccHHHHHHHHH
Q psy14042         19 EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIR---LHEEGY-LRTRPAIIVANK-IDLARARAVSSQDAKNLAA   89 (238)
Q Consensus        19 e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~---l~~~~~-~~~~piilVgNK-~DL~~~~~v~~~~~~~~~~   89 (238)
                      +++|.+|..   ++|++|+|.|. |++.++ .+..+.+   +..... ..++|++|.+|| .|++.  ..+..++.+...
T Consensus       198 ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~L~  274 (312)
T 3l2o_B          198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELH  274 (312)
T ss_dssp             CCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHHcC
Confidence            567888877   99999999999 887665 3333332   222221 368999999998 48853  334444433221


Q ss_pred             ----hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         90 ----SFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        90 ----~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                          ...+.+..|||.||+|+.+.+++|++.+.
T Consensus       275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence                23567899999999999999999997763

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.40  E-value=7.5e-07  Score=74.71  Aligned_cols=91  Identities=21%  Similarity=0.175  Sum_probs=58.3

Q ss_pred             CceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEEEE-eccCCCcccccH-------HHHHHHHHhCCCe---
Q psy14042         28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIVAN-KIDLARARAVSS-------QDAKNLAASFKVK---   94 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilVgN-K~DL~~~~~v~~-------~~~~~~~~~~~~~---   94 (238)
                      ++|++|+|+|+.+  |... ..+...+.+.... ...|.++|.| |+|+... .+..       .++..+++..+..   
T Consensus       105 ~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~  181 (260)
T 2xtp_A          105 GPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICA  181 (260)
T ss_dssp             CCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred             CCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEE
Confidence            8999999999932  2222 2222333333211 2456666555 9999743 2222       3355566666532   


Q ss_pred             E--EEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         95 F--IEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        95 ~--~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      +  +++||+++.|++++|..|.+.+....
T Consensus       182 ~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          182 FNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            3  78999999999999999999887643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.38  E-value=4.9e-08  Score=83.35  Aligned_cols=86  Identities=13%  Similarity=0.028  Sum_probs=55.6

Q ss_pred             CceEEE-EEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh--CC-CeEEEEccCC
Q psy14042         28 DETGLI-IVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS--FK-VKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~I-lV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~--~~-~~~~evSA~t  102 (238)
                      +++++| +|+|. +..+......+...+.    ..+.|+++|+||+|+...+....+..+.....  .+ .+++++||++
T Consensus       161 ~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~  236 (299)
T 2aka_B          161 KENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKD  236 (299)
T ss_dssp             STTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBC
T ss_pred             CCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhh
Confidence            566565 68888 5444443334444442    25789999999999976544323222211011  13 3688999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy14042        103 HHNVDELLVGILNQI  117 (238)
Q Consensus       103 ~~gv~elf~~i~~~l  117 (238)
                      |.|++++|..+.+..
T Consensus       237 ~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          237 IDGKKDITAALAAER  251 (299)
T ss_dssp             TTSCBCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHH
Confidence            999999999998743

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.33  E-value=3.6e-07  Score=72.53  Aligned_cols=68  Identities=15%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             EEEEEEEe----CCCcccccC---C----ceEEEEEEEC--CcchHHHHHHHHHHHHHhc---CCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---D----ETGLIIVWML--YKPSYHRVEQDVIRLHEEG---YLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~----ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~   74 (238)
                      .+.+.+||    ++|+..+..   +    +|++|+|||+  +..+|..+..|+.++....   ...+.|+++|+||+|+.
T Consensus        90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  169 (193)
T ss_dssp             CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence            45688999    667665544   3    8999999999  5789999999988876543   22589999999999997


Q ss_pred             Cccc
Q psy14042         75 RARA   78 (238)
Q Consensus        75 ~~~~   78 (238)
                      ..+.
T Consensus       170 ~~~~  173 (193)
T 2ged_A          170 TARP  173 (193)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            6443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.32  E-value=5.7e-07  Score=74.57  Aligned_cols=91  Identities=13%  Similarity=0.094  Sum_probs=59.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEeccCCCccccc------HHHHHHHHHhCCCeEEEEc
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKIDLARARAVS------SQDAKNLAASFKVKFIEVS   99 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~~~v~------~~~~~~~~~~~~~~~~evS   99 (238)
                      ++|++|+|+|+ +...  ....|+..+.+... ....|++||+||+|+...+.+.      .+.++.+++..+..|+.++
T Consensus       112 ~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~  189 (239)
T 3lxx_A          112 GPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALN  189 (239)
T ss_dssp             CCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECC
T ss_pred             CCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEE
Confidence            78999999998 4322  12233333332211 1346999999999997654443      2457778888888888787


Q ss_pred             cCCC-----CCHHHHHHHHHHHHHhh
Q psy14042        100 VGIH-----HNVDELLVGILNQIRLK  120 (238)
Q Consensus       100 A~t~-----~gv~elf~~i~~~l~~~  120 (238)
                      +..+     .++.++|..+.+.+.+.
T Consensus       190 ~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          190 NKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHHc
Confidence            7654     68999999988877654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.29  E-value=1.3e-07  Score=86.37  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g  105 (238)
                      ++|++|+|+|. +..+  ....|+.++.+.   .+.|++||+||+|+...+.    ...++. ..++ +++++||++|.|
T Consensus       102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          102 EADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence            89999999998 4332  333444444332   6899999999999864321    111111 2233 467999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14042        106 VDELLVGILNQIR  118 (238)
Q Consensus       106 v~elf~~i~~~l~  118 (238)
                      +++++..+.+.+.
T Consensus       172 v~~L~~~i~~~l~  184 (456)
T 4dcu_A          172 LGDLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHHHTTGG
T ss_pred             hHHHHHHHHhhcc
Confidence            9999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.27  E-value=6.9e-07  Score=72.69  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~  104 (238)
                      .++.+++|+|. .....  ...+.   ..    .+.|.++|+||+|+........++....++..  +++++++||++|.
T Consensus       129 ~~~~~i~vvd~~~~~~~--~~~~~---~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  199 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDDV--VEKHP---EI----FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGK  199 (221)
T ss_dssp             SCSEEEEEEEGGGCTTH--HHHCH---HH----HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTB
T ss_pred             ccCcEEEEEeCCCcchh--hhhhh---hh----hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCC
Confidence            56788999998 43211  11111   11    24789999999999754434455555555543  5789999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy14042        105 NVDELLVGILNQIRL  119 (238)
Q Consensus       105 gv~elf~~i~~~l~~  119 (238)
                      |++++|..|.+.+..
T Consensus       200 gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          200 GFEEWIDFLRGILNV  214 (221)
T ss_dssp             THHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987744

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.24  E-value=2.5e-06  Score=81.75  Aligned_cols=60  Identities=18%  Similarity=0.079  Sum_probs=46.7

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+.++|||    ++|...+..   .+|++|+|+|. +..+++....|.. +.+    .+.|+++|+||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            37899999    566655544   89999999999 7777777766653 433    5799999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.23  E-value=1.7e-06  Score=82.96  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=71.2

Q ss_pred             EEEEEe-C------CCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         13 RAIIWN-E------QYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        13 ~l~iWD-e------~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      .+.||| .      ....++..   ++|++|+|+|. +..+..+...|...+..    .+.|+++|+||+|+.....+.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~  250 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDP  250 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSST
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccCh
Confidence            589999 1      12222222   89999999999 77788777666554432    4678999999999975432211


Q ss_pred             H----------HHH-----HHHHhC--------CCeEEEEccC--------------CCCCHHHHHHHHHHHHHhhh
Q psy14042         82 Q----------DAK-----NLAASF--------KVKFIEVSVG--------------IHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        82 ~----------~~~-----~~~~~~--------~~~~~evSA~--------------t~~gv~elf~~i~~~l~~~~  121 (238)
                      +          ...     .+....        ..+++++||+              ++.|+++++..+.+.+...+
T Consensus       251 ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          251 DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence            1          111     111111        2469999999              99999999999998776543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.22  E-value=2.3e-06  Score=73.35  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .+|+++.|.|. ++.+..+     ..+.++.  .+.|.++|+||+||.....  .+....+.++.+++++.+||+++.|+
T Consensus        23 ~aDvVl~VvDAr~p~~~~~-----~~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~gi   93 (282)
T 1puj_A           23 LIDIVYELVDARIPMSSRN-----PMIEDIL--KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGL   93 (282)
T ss_dssp             GCSEEEEEEETTSTTTTSC-----HHHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred             hCCEEEEEEeCCCCCccCC-----HHHHHHH--CCCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcccH
Confidence            89999999999 7666542     1122222  5799999999999976321  12223334456789999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14042        107 DELLVGILNQIRLK  120 (238)
Q Consensus       107 ~elf~~i~~~l~~~  120 (238)
                      ++++..+.+.+...
T Consensus        94 ~~L~~~i~~~l~~~  107 (282)
T 1puj_A           94 NQIVPASKEILQEK  107 (282)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988877644

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.22  E-value=3.2e-07  Score=83.01  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             CceEEEEEEEC-Cc-chHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCC
Q psy14042         28 DETGLIIVWML-YK-PSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~-~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t  102 (238)
                      ++++.+++|+. .. .+|.... .|+..+.     .++|+|+|+||+|+...+++..  +++...+...++++|++||++
T Consensus       136 d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~  210 (418)
T 2qag_C          136 DNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD  210 (418)
T ss_dssp             CC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---
T ss_pred             CCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCC
Confidence            67777777777 43 4676664 5666653     4689999999999987776665  677888888899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy14042        103 HHNVDELLVGILNQI  117 (238)
Q Consensus       103 ~~gv~elf~~i~~~l  117 (238)
                      +.+++++|..+...+
T Consensus       211 ~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          211 DEEENKLVKKIKDRL  225 (418)
T ss_dssp             --------------C
T ss_pred             CcCHHHHHHHHHhhC
Confidence            999999888887554

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.21  E-value=2.8e-07  Score=86.88  Aligned_cols=93  Identities=12%  Similarity=0.055  Sum_probs=52.5

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc---hH---HHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCC
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP---SY---HRVEQDVIRLHEEGYLRTRP-AIIVANKIDLAR   75 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~---s~---~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~   75 (238)
                      ...+.|||    ++|......   .+|++|+|+|. +..   .|   ......+..+..    .++| +|+|+||+|+..
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence            36789999    777655444   89999999999 421   11   111222222222    4565 999999999975


Q ss_pred             c-ccc---cHHHHHHHH-HhCCC-----eEEEEccCCCCCHH
Q psy14042         76 A-RAV---SSQDAKNLA-ASFKV-----KFIEVSVGIHHNVD  107 (238)
Q Consensus        76 ~-~~v---~~~~~~~~~-~~~~~-----~~~evSA~t~~gv~  107 (238)
                      . ...   ...++..+. +..++     +++++||++|.|++
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            2 111   123444555 55554     79999999999998

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.20  E-value=3.2e-06  Score=78.66  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=41.4

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ..+.+.|||    ++|...+..   .+|++|+|+|. +..... ...+..    .....++|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~----~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME----VTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH----HHTTTTCCEEEEEECTTSCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH----HHHHcCCCEEEEEcCcCCcc
Confidence            347899999    667654333   99999999999 543222 122222    22236799999999999964

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.16  E-value=6.4e-06  Score=79.09  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=44.8

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ..+.++|||    ++|...+..   .+|++|+|+|. +....+....|. .+..    .+.|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence            448899999    667655544   89999999999 655555544443 3332    5799999999999853

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.11  E-value=1.6e-05  Score=63.79  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=61.0

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCC--CeEEEEccCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFK--VKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~--~~~~evSA~t  102 (238)
                      .++++++++|+ +..++... .....+..    .+.|+++|+||+|+....+  ...+.++.++...+  +.++++||++
T Consensus       108 ~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~  182 (210)
T 1pui_A          108 SLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK  182 (210)
T ss_dssp             TEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred             cccEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecC
Confidence            68999999999 65555421 11222222    5689999999999875432  22345566665554  5789999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy14042        103 HHNVDELLVGILNQIRL  119 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~  119 (238)
                      +.|+++++..|.+.+.+
T Consensus       183 ~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          183 KQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             TBSHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999876543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.10  E-value=3.4e-06  Score=74.39  Aligned_cols=99  Identities=9%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             EEEEEEe-CCCccccc---CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHH
Q psy14042         12 VRAIIWN-EQYEKLTS---SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDA   84 (238)
Q Consensus        12 v~l~iWD-e~~~~l~~---~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~   84 (238)
                      +.+.||| .-+.....   ..+|++|+|+|. ..+.+..+.         ....+.|.++|+||+|+........  .+.
T Consensus       172 ~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l  242 (355)
T 3p32_A          172 FDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARLAAREL  242 (355)
T ss_dssp             CCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence            5688999 32222111   289999999998 444333211         0113469999999999975433211  122


Q ss_pred             HHHHH-------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         85 KNLAA-------SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        85 ~~~~~-------~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      .....       .++.+++++||++|.|+++++..|.+.+..
T Consensus       243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            22211       125789999999999999999999988865

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.05  E-value=1.4e-06  Score=76.97  Aligned_cols=87  Identities=11%  Similarity=0.036  Sum_probs=60.4

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++|+|++. +.+...  ..|+..+.... ..+.|+++|+||+|+...+....+.+..++...+.+|+++|+.++.++
T Consensus       172 ~~d~iilvv~~~~~~~~~--~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i  248 (360)
T 3t34_A          172 KPNCIILAISPANQDLAT--SDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADI  248 (360)
T ss_dssp             SSSEEEEEEEETTSCGGG--CHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHH
T ss_pred             cCCeEEEEeecccCCcCC--HHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHh
Confidence            89999999876 443332  33444443333 357899999999999876655555555555567889999999999998


Q ss_pred             HHHHHHHHHHH
Q psy14042        107 DELLVGILNQI  117 (238)
Q Consensus       107 ~elf~~i~~~l  117 (238)
                      ++.+..+....
T Consensus       249 ~~~~~~~~~~~  259 (360)
T 3t34_A          249 NKNVDMIAARK  259 (360)
T ss_dssp             HTTCCHHHHHH
T ss_pred             ccCCCHHHHHH
Confidence            87766544433

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.00  E-value=2.2e-05  Score=75.22  Aligned_cols=59  Identities=15%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      +.+.|||    .+|...+..   .+|++|+|+|. +..+++....|. .+.+    .+.|+++|+||+|+..
T Consensus        75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred             eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence            6789999    566554443   89999999999 777777766654 3444    5789999999999964

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.98  E-value=7.5e-06  Score=73.47  Aligned_cols=49  Identities=18%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q psy14042         61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~  111 (238)
                      ..|+++|+||+|+...  ...+...+.....+.+++.+||+.+.|+.+++.
T Consensus       214 ~kP~i~v~NK~D~~~~--~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAASD--EQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSCH--HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccch--HHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            4899999999998721  111223333333478999999999999887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=8e-06  Score=70.86  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=60.3

Q ss_pred             CCCcccccC---CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhC
Q psy14042         19 EQYEKLTSS---DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASF   91 (238)
Q Consensus        19 e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~   91 (238)
                      +|-..+...   ++|.+++|.|. ++ .+...+..++..+..    .++|.+||.||+||......  ..+......+..
T Consensus        74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence            444444443   99999999999 44 344444444433322    67999999999999765321  122333444456


Q ss_pred             CCeEEEEccCCCCCHHHHHHH
Q psy14042         92 KVKFIEVSVGIHHNVDELLVG  112 (238)
Q Consensus        92 ~~~~~evSA~t~~gv~elf~~  112 (238)
                      |.+++.+||.++.|+++++..
T Consensus       150 g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          150 GYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             TCCEEECCHHHHTTCTTTGGG
T ss_pred             CCeEEEEecCCCCCHHHHHhh
Confidence            889999999999998877653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.91  E-value=2.1e-05  Score=65.48  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             CCCCEEEEEEeccCCCcccccH--H---HHH----H-----------------HHHhCC--CeEEEEccCCCCCHHHHHH
Q psy14042         60 RTRPAIIVANKIDLARARAVSS--Q---DAK----N-----------------LAASFK--VKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~--~---~~~----~-----------------~~~~~~--~~~~evSA~t~~gv~elf~  111 (238)
                      .+.|+++|+||+|+....++..  +   +..    .                 ++++++  .+++++||+++.|+++++.
T Consensus       170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  249 (262)
T 1yrb_A          170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  249 (262)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence            4689999999999976442210  0   000    1                 123333  4899999999999999999


Q ss_pred             HHHHHHHh
Q psy14042        112 GILNQIRL  119 (238)
Q Consensus       112 ~i~~~l~~  119 (238)
                      .|.+.+..
T Consensus       250 ~i~~~~~~  257 (262)
T 1yrb_A          250 LAYEHYCT  257 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99987754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.86  E-value=8.9e-06  Score=69.85  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=54.6

Q ss_pred             CceEEEEEEEC-CcchH-HHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccC---C
Q psy14042         28 DETGLIIVWML-YKPSY-HRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVG---I  102 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~-~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~---t  102 (238)
                      ++|++++|+|. +.+.. .....+...+.    ..+.|+++|+||+|+........+.++......+.+|+++|+.   +
T Consensus       167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~  242 (315)
T 1jwy_B          167 KQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQED  242 (315)
T ss_dssp             STTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHH
T ss_pred             CCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhh
Confidence            89999999997 43311 11112333322    2678999999999997554422222221111223566666654   4


Q ss_pred             ---CCCHHHHHHHHHHHHHhh
Q psy14042        103 ---HHNVDELLVGILNQIRLK  120 (238)
Q Consensus       103 ---~~gv~elf~~i~~~l~~~  120 (238)
                         +.|+++++..+.+.+...
T Consensus       243 ~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          243 IIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             HSSSCCHHHHHHHHHHHHHTC
T ss_pred             hccCCCHHHHHHHHHHHHhCC
Confidence               789999999998887654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.79  E-value=7.7e-05  Score=65.98  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-HHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-SQDAKNLAASFKVKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-~~~~~~~~~~~~~~~~evSA~t~~g  105 (238)
                      ++|.+++|... ...+...+..++.....    .++|.+||.||+||....... .+.........|++++.+||.++.|
T Consensus       130 nvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g  205 (358)
T 2rcn_A          130 NIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG  205 (358)
T ss_dssp             CCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred             cCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence            89999999777 34444555555544433    568889999999997653210 1122233446789999999999999


Q ss_pred             HHHHHHH
Q psy14042        106 VDELLVG  112 (238)
Q Consensus       106 v~elf~~  112 (238)
                      ++++...
T Consensus       206 l~~L~~~  212 (358)
T 2rcn_A          206 LKPLEEA  212 (358)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.66  E-value=5.9e-05  Score=63.62  Aligned_cols=70  Identities=9%  Similarity=-0.058  Sum_probs=46.9

Q ss_pred             eEEEEEEEe----CCCccccc------------CCceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEEEEec
Q psy14042         10 GKVRAIIWN----EQYEKLTS------------SDETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIVANKI   71 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~------------~~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilVgNK~   71 (238)
                      ..+.+.|||    +++..+..            .++|++|+|+|++..++... ..|+..+...... ...|+++|+||+
T Consensus        85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~  164 (270)
T 1h65_A           85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA  164 (270)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred             CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence            346899999    34432221            16999999999954445543 4788777665321 227999999999


Q ss_pred             cCCCcccc
Q psy14042         72 DLARARAV   79 (238)
Q Consensus        72 DL~~~~~v   79 (238)
                      |+...+..
T Consensus       165 Dl~~~~~~  172 (270)
T 1h65_A          165 QFSPPDGL  172 (270)
T ss_dssp             SCCCGGGC
T ss_pred             ccCCcCCC
Confidence            99755443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.65  E-value=3.4e-05  Score=67.59  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             EEEEEEe-CC---CcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHH
Q psy14042         12 VRAIIWN-EQ---YEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDA   84 (238)
Q Consensus        12 v~l~iWD-e~---~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~   84 (238)
                      +.+.||| .-   +.......+|++++|+|. ..+.++.+..   ..      .+.|.++|+||+|+.....+..  ++.
T Consensus       149 ~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l  219 (341)
T 2p67_A          149 YDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHMY  219 (341)
T ss_dssp             CSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHHH
Confidence            5688999 22   222222389999999998 4332211110   00      1468899999999975432221  122


Q ss_pred             HHHHHhC-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         85 KNLAASF-------KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        85 ~~~~~~~-------~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +......       ..+++++||++|.|+++++..|.+.+.
T Consensus       220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            2222222       457899999999999999999998765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.64  E-value=2.8e-05  Score=65.78  Aligned_cols=75  Identities=11%  Similarity=-0.047  Sum_probs=53.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|+++.|.|. ++.+..+..     +. .  . +.|.++|.||+||.....  .+....+.+..|.++ .+||+++.|+
T Consensus        21 ~~D~vl~VvDar~P~~~~~~~-----l~-l--l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi   88 (262)
T 3cnl_A           21 LVNTVVEVRDARAPFATSAYG-----VD-F--S-RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRK   88 (262)
T ss_dssp             TCSEEEEEEETTSTTTTSCTT-----SC-C--T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred             hCCEEEEEeeCCCCCcCcChH-----HH-h--c-CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCH
Confidence            89999999999 665544210     00 1  1 789999999999976422  112233444567888 9999999999


Q ss_pred             HHHHHHHH
Q psy14042        107 DELLVGIL  114 (238)
Q Consensus       107 ~elf~~i~  114 (238)
                      ++++..+.
T Consensus        89 ~~L~~~l~   96 (262)
T 3cnl_A           89 VLLKKLSF   96 (262)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHH
Confidence            99887764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.50  E-value=5e-06  Score=73.19  Aligned_cols=56  Identities=13%  Similarity=0.081  Sum_probs=38.6

Q ss_pred             CCCCEEEEEEeccCCCcccccHHHHHHH--HHhCC-CeEEEEccCCCCCHHHHHHHHHH
Q psy14042         60 RTRPAIIVANKIDLARARAVSSQDAKNL--AASFK-VKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~~~~~~~--~~~~~-~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      .+.|+++|+||+|+........+..+..  ....+ .+++++||+++.|+++++..+.+
T Consensus       196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          196 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            6789999999999975443222111110  01123 35788999999999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.43  E-value=0.00012  Score=61.50  Aligned_cols=72  Identities=11%  Similarity=-0.026  Sum_probs=47.6

Q ss_pred             EECCeEEEEEEEe----CCCccccc------------CCceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEE
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTS------------SDETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIV   67 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~------------~~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilV   67 (238)
                      ..++  ..+.|||    ++|..+..            .++|++|+|++++...+... ..|+..+...... ...|+++|
T Consensus        80 ~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  157 (262)
T 3def_A           80 TMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLV  157 (262)
T ss_dssp             EETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             EECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEE
Confidence            4444  5889999    44433221            17899999999954335544 4788887765422 23599999


Q ss_pred             EEeccCCCcccc
Q psy14042         68 ANKIDLARARAV   79 (238)
Q Consensus        68 gNK~DL~~~~~v   79 (238)
                      +||+|+...+..
T Consensus       158 ~nK~Dl~~~~~~  169 (262)
T 3def_A          158 LTHAQFSPPDEL  169 (262)
T ss_dssp             EECTTCCCSTTC
T ss_pred             EeCcccCCCCCc
Confidence            999999644333

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.31  E-value=0.00042  Score=67.77  Aligned_cols=62  Identities=11%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++..+.++|||    ++|...+..   .+|++|+|+|. +..+++....|... ..    .+.|+++|+||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH----TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----cCCCeEEEEECCCcc
Confidence            44578999999    777766554   99999999999 87788877666533 22    578999999999985

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.21  E-value=0.00058  Score=59.98  Aligned_cols=98  Identities=9%  Similarity=0.056  Sum_probs=56.2

Q ss_pred             EEEEEEe-CCCc--ccc-cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042         12 VRAIIWN-EQYE--KLT-SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN   86 (238)
Q Consensus        12 v~l~iWD-e~~~--~l~-~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~   86 (238)
                      +.+.++| --+.  ... ...+|++++|+|. .....+.+.   ..      .-+.|.++|.||+|+........ ....
T Consensus       167 ~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~------il~~~~ivVlNK~Dl~~~~~~~~-~~~~  236 (349)
T 2www_A          167 YDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIK---RG------IIEMADLVAVTKSDGDLIVPARR-IQAE  236 (349)
T ss_dssp             CSEEEEECCCC--CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH-HHHH
T ss_pred             CCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhH---HH------HHhcCCEEEEeeecCCCchhHHH-HHHH
Confidence            3567888 2222  111 1189999999998 433222111   11      13468899999999964321110 1111


Q ss_pred             HHH----------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         87 LAA----------SFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        87 ~~~----------~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      +..          .++.+++.+||++|.|+++++..|.+.+..
T Consensus       237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            211          124578999999999999999999887643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.17  E-value=0.004  Score=55.07  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=43.2

Q ss_pred             CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC----------------------CCCHHHHHHHHHHHH
Q psy14042         60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI----------------------HHNVDELLVGILNQI  117 (238)
Q Consensus        60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t----------------------~~gv~elf~~i~~~l  117 (238)
                      ...|+++++||.|..-........++.+++..+.+++.+||+.                      ..|++.+...+.+.+
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L  277 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL  277 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence            3589999999999753223345677788888899999999764                      367777777766554


Q ss_pred             H
Q psy14042        118 R  118 (238)
Q Consensus       118 ~  118 (238)
                      -
T Consensus       278 ~  278 (363)
T 1jal_A          278 N  278 (363)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.10  E-value=0.0023  Score=56.70  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             CCCEEEEEEeccCC--Cc-ccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042         61 TRPAIIVANKIDLA--RA-RAVSSQDAKNLAASFKVKFIEVSVGIHHNVD  107 (238)
Q Consensus        61 ~~piilVgNK~DL~--~~-~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~  107 (238)
                      ..|+++++||.|..  +. +....+.++.+++..+.+++++||++..++.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~  250 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELA  250 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHH
Confidence            47999999999843  22 1344567788888889999999998844433

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.85  E-value=0.003  Score=58.79  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=38.8

Q ss_pred             EEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042         12 VRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus        12 v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ++++|.|    ..|..-. ..  -+|++|+|.|....--...+.....+.+    .++|.+++.||+|.+.
T Consensus       100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchh
Confidence            6788999    4443222 22  7999999999932222222333344444    6799999999999853

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.74  E-value=0.0021  Score=56.10  Aligned_cols=98  Identities=12%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             EEEEEEe-CCCcc--cc-cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042         12 VRAIIWN-EQYEK--LT-SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN   86 (238)
Q Consensus        12 v~l~iWD-e~~~~--l~-~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~   86 (238)
                      +.+.++| --++.  .. ...+|.+++|+|. ..+..+.+..   .+      .+.|.++|.||+|+......+....+.
T Consensus       148 ~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i------~~~~~ivvlNK~Dl~~~~~~s~~~~~~  218 (337)
T 2qm8_A          148 FDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK---GI------FELADMIAVNKADDGDGERRASAAASE  218 (337)
T ss_dssp             CCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT---TH------HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH---HH------hccccEEEEEchhccCchhHHHHHHHH
Confidence            4567777 22211  11 1289999999987 3322211110   01      124667778999975433222222333


Q ss_pred             HHHh----------CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         87 LAAS----------FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        87 ~~~~----------~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      +...          +..+++.+||+++.|+++++..|.+...
T Consensus       219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3221          1357899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.45  E-value=0.0012  Score=63.79  Aligned_cols=83  Identities=8%  Similarity=0.011  Sum_probs=54.1

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh----CC-CeEEEEccC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS----FK-VKFIEVSVG  101 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~~-~~~~evSA~  101 (238)
                      .+|.+++|.|. ....-.+...++..+..    .+.|+++|.||+|+............  .+.    .+ .+++.+||+
T Consensus       187 ~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~  260 (772)
T 3zvr_A          187 ENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQK  260 (772)
T ss_dssp             TTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCE
T ss_pred             CCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHH--HHhhhhhccCCceEEeccc
Confidence            78999999988 43222222233444332    67899999999999765443322111  111    13 357789999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy14042        102 IHHNVDELLVGILNQ  116 (238)
Q Consensus       102 t~~gv~elf~~i~~~  116 (238)
                      +|.|+++++..+.+.
T Consensus       261 ~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          261 DIDGKKDITAALAAE  275 (772)
T ss_dssp             ESSSSEEHHHHHHHH
T ss_pred             ccccchhHHHHHHHH
Confidence            999999999998864

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.35  E-value=0.0011  Score=61.71  Aligned_cols=48  Identities=13%  Similarity=0.139  Sum_probs=37.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      ++|++|+|+|. +.........|+..+.+    .+.|+++|+||+|+...+++
T Consensus       188 ~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          188 RVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             HCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCHHHH
T ss_pred             hCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCHHHH
Confidence            79999999999 55566667777776643    46899999999999765443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.86  E-value=0.051  Score=48.48  Aligned_cols=78  Identities=14%  Similarity=0.082  Sum_probs=56.1

Q ss_pred             ceEEeecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCC-CCcee
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPG-SEMGE  213 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~-~~~~~  213 (238)
                      .....++.+|. ++|..+-.         ...+..+.|+|++..+..|..+|.|++||..|.....+..+.... .....
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEE
T ss_pred             CEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCcee
Confidence            34556778887 88864321         125778899999999999999999999999987665555443221 12358


Q ss_pred             EEEEEeecC
Q psy14042        214 IAALKYYLN  222 (238)
Q Consensus       214 i~~~~w~~~  222 (238)
                      +.++.|..+
T Consensus       243 v~~v~w~~~  251 (434)
T 2oit_A          243 VLDVLWIGT  251 (434)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEecC
Confidence            999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.055  Score=50.64  Aligned_cols=75  Identities=12%  Similarity=0.297  Sum_probs=53.1

Q ss_pred             eEEeecccCc-eeeecc-----c-cee-----eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCee--------eeeeeec
Q psy14042        146 AVIVGSVDGN-RIWGKE-----F-KKT-----SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFM--------NKVSMWS  205 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~-----~-~~~-----~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~--------~~~~~~~  205 (238)
                      ...+.+.+|+ ++|..+     + ...     .+..+.||||++.+..|+.+|+|++||.++..+        ..+..+.
T Consensus        99 ~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~  178 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD  178 (588)
T ss_dssp             CEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC
T ss_pred             EEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc
Confidence            3456778888 999621     1 211     388899999999999999999999999987642        3232221


Q ss_pred             CCCCCceeEEEEEeecC
Q psy14042        206 GPGSEMGEIAALKYYLN  222 (238)
Q Consensus       206 ~~~~~~~~i~~~~w~~~  222 (238)
                        ......|.++.|..+
T Consensus       179 --~gh~~~V~sVawSPd  193 (588)
T 2j04_A          179 --AGSKDWVTHIVWYED  193 (588)
T ss_dssp             --TTCCCCEEEEEEETT
T ss_pred             --ccccccEEEEEEcCC
Confidence              123467999988854

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.06  Score=45.91  Aligned_cols=51  Identities=16%  Similarity=0.502  Sum_probs=43.0

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||..|..+..+.-+      ..+|.++.|...
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~v~~~~~~~~  160 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH------RAPIVSVKWNKD  160 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC------CSCEEEEEECTT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC------CccEEEEEECCC
Confidence            678889999999999999999999999989888776644      456888888654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.00  E-value=0.1  Score=47.05  Aligned_cols=69  Identities=17%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             EEeecccCc-eeeecccc--------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEE
Q psy14042        147 VIVGSVDGN-RIWGKEFK--------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAAL  217 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~--------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~  217 (238)
                      .+.++.+|. ++|...-+        ...+..+.|+|+++.+..|..+|.|+|||..|..+..+.-+      ..+|.++
T Consensus        31 las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~------~~~v~~~  104 (577)
T 2ymu_A           31 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------SSSVRGV  104 (577)
T ss_dssp             EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC------SSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECC------CCCEEEE
Confidence            445666776 77753211        12567789999999999999999999999999887766544      3456677


Q ss_pred             Eeec
Q psy14042        218 KYYL  221 (238)
Q Consensus       218 ~w~~  221 (238)
                      .|..
T Consensus       105 ~~s~  108 (577)
T 2ymu_A          105 AFSP  108 (577)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            7654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.95  E-value=0.098  Score=43.59  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             EEeecccCc-eeeeccccee------------------------eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeee
Q psy14042        147 VIVGSVDGN-RIWGKEFKKT------------------------SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNK  200 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~~------------------------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~  200 (238)
                      .+.++.+|. ++|.-.....                        .+..+.|+|++..+..|..+|.|++||.. |..+..
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence            566777887 8886543210                        37889999999999999999999999986 555555


Q ss_pred             eeeecCCCCCceeEEEEEeecCC
Q psy14042        201 VSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       201 ~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      +.-+      ..+|.++.|....
T Consensus       311 ~~~~------~~~v~~~~~s~~g  327 (368)
T 3mmy_A          311 SEQL------DQPISACCFNHNG  327 (368)
T ss_dssp             CCCC------SSCEEEEEECTTS
T ss_pred             ecCC------CCCceEEEECCCC
Confidence            5433      4578888887643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.91  E-value=0.14  Score=43.66  Aligned_cols=73  Identities=14%  Similarity=0.114  Sum_probs=54.3

Q ss_pred             ceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~  212 (238)
                      ...+.++.+|. ++|...-..           ..+..+.|+|++..+..|..+|.|++||..|..+..+.-+      ..
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h------~~  205 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH------KA  205 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS------SS
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC------CC
Confidence            34456677777 888643110           1477889999999999999999999999998887776654      45


Q ss_pred             eEEEEEeecCC
Q psy14042        213 EIAALKYYLNR  223 (238)
Q Consensus       213 ~i~~~~w~~~~  223 (238)
                      .|.++.|....
T Consensus       206 ~v~~~~~~~~~  216 (383)
T 3ei3_B          206 KVTHAEFNPRC  216 (383)
T ss_dssp             CEEEEEECSSC
T ss_pred             cEEEEEECCCC
Confidence            67788886543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.89  E-value=0.18  Score=41.86  Aligned_cols=69  Identities=17%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             eEEeecccCc-eeeeccc------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKEF------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~  212 (238)
                      ..+.++.+|. ++|...-            .. .+..+.|+|++..+..|..+|.|++||........+.-+      ..
T Consensus        56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~  128 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH------DA  128 (368)
T ss_dssp             EEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SS
T ss_pred             EEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc------cC
Confidence            4556777777 8885432            21 467789999999999999999999999976665544333      45


Q ss_pred             eEEEEEeec
Q psy14042        213 EIAALKYYL  221 (238)
Q Consensus       213 ~i~~~~w~~  221 (238)
                      +|.++.|..
T Consensus       129 ~v~~~~~~~  137 (368)
T 3mmy_A          129 PVKTIHWIK  137 (368)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            788888843

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=94.89  E-value=0.021  Score=53.99  Aligned_cols=59  Identities=17%  Similarity=0.102  Sum_probs=36.3

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+++|.|    ..|..-...   -+|++|+|.|....--...+.....+.+    .++|.+++.||.|..
T Consensus        67 ~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           67 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSS
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccc
Confidence            5567788    444332222   7899999999922111112333334444    468999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.88  E-value=0.07  Score=46.90  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=52.5

Q ss_pred             ceEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~  212 (238)
                      ...+.++.||. ++|.-+-.           ...+..+.|+|++..+..|..+|.|++||..|..+..+..+      ..
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h------~~  251 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH------KK  251 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCC------SS
T ss_pred             CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecc------cc
Confidence            35566778887 88853211           01345678999999999999999999999999887766655      44


Q ss_pred             eEEEEEeec
Q psy14042        213 EIAALKYYL  221 (238)
Q Consensus       213 ~i~~~~w~~  221 (238)
                      +|.++.|..
T Consensus       252 ~v~~v~~~p  260 (435)
T 4e54_B          252 KVTHVALNP  260 (435)
T ss_dssp             CEEEEEECT
T ss_pred             eEEeeeecC
Confidence            677777764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.65  E-value=0.15  Score=43.69  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             cceEEeecccCc-eeeeccc--------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        144 ASAVIVGSVDGN-RIWGKEF--------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~--------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ++..+.++.+|. ++|.-+-              .. .+..+.|+|+++.+..|..+|.|++||.. |..+..+.-|   
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~-~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h---  168 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDD-IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH---  168 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc---
Confidence            355667888888 9995321              11 46788999999999999999999999975 6656555433   


Q ss_pred             CCCceeEEEEEeec
Q psy14042        208 GSEMGEIAALKYYL  221 (238)
Q Consensus       208 ~~~~~~i~~~~w~~  221 (238)
                         ..+|.++.|..
T Consensus       169 ---~~~V~~~~~~~  179 (344)
T 4gqb_B          169 ---AAQVTCVAASP  179 (344)
T ss_dssp             ---SSCEEEEEECS
T ss_pred             ---CCceEEEEecC
Confidence               33566666654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=94.56  E-value=0.077  Score=50.77  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=38.8

Q ss_pred             EEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         11 KVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .+.++|.|    -.|..-. ..  -+|++|+|.|.-..--...+..+..+.+    .+.|.+++.||+|..
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            57889999    3443221 22  6899999999932222223334444444    469999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.55  E-value=0.21  Score=42.81  Aligned_cols=70  Identities=9%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCcee
Q psy14042        146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~  213 (238)
                      ..+.++.+|. ++|...          ... .+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..+
T Consensus       111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------~~~  183 (420)
T 3vl1_A          111 RFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH------RAT  183 (420)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC------SSC
T ss_pred             EEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------CCc
Confidence            4556677776 777632          222 57788999999999999999999999984 6666665533      456


Q ss_pred             EEEEEeecC
Q psy14042        214 IAALKYYLN  222 (238)
Q Consensus       214 i~~~~w~~~  222 (238)
                      |.++.|...
T Consensus       184 v~~~~~~~~  192 (420)
T 3vl1_A          184 VTDIAIIDR  192 (420)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEcCC
Confidence            777877653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.26  E-value=0.33  Score=39.98  Aligned_cols=70  Identities=21%  Similarity=0.332  Sum_probs=49.0

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|...-.+         ..+....|+|++..+..|..+|.|++||.. |..+..+.-+      ...|
T Consensus        37 ~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v  110 (312)
T 4ery_A           37 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH------SNYV  110 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred             EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC------CCCE
Confidence            4456677787 888643111         146788999999999999999999999985 6656655533      3345


Q ss_pred             EEEEeec
Q psy14042        215 AALKYYL  221 (238)
Q Consensus       215 ~~~~w~~  221 (238)
                      .++.|..
T Consensus       111 ~~~~~~~  117 (312)
T 4ery_A          111 FCCNFNP  117 (312)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            6666654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.24  E-value=0.37  Score=40.62  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             ceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCc
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~  211 (238)
                      ...+.++.+|. ++|...-.+           ..+..+.|+|++..+..|..+|.|++||. .|..+..+.-|      .
T Consensus       239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h------~  312 (340)
T 1got_B          239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH------D  312 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------S
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC------C
Confidence            34567788887 899754221           13567899999999999999999999997 46666555433      4


Q ss_pred             eeEEEEEeecCC
Q psy14042        212 GEIAALKYYLNR  223 (238)
Q Consensus       212 ~~i~~~~w~~~~  223 (238)
                      .+|.++.|..+.
T Consensus       313 ~~v~~~~~s~dg  324 (340)
T 1got_B          313 NRVSCLGVTDDG  324 (340)
T ss_dssp             SCEEEEEECTTS
T ss_pred             CcEEEEEEcCCC
Confidence            578889887543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=94.09  E-value=0.24  Score=41.49  Aligned_cols=57  Identities=11%  Similarity=0.312  Sum_probs=42.7

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS  202 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~  202 (238)
                      ..+.++.||. ++|.-.-.+         ..+..+.|+|++..+..|..+|.|++||..|..+..+.
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~  145 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL  145 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455677776 787643211         25677899999999999999999999999987665543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.04  E-value=0.18  Score=42.55  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             eEEeecccCc-eeeecccce----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCee-eeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFM-NKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~-~~~~~~~~~~~~~~  212 (238)
                      ..+.++.+|. ++|.-+-.+          ..+..+.|+|++..+..|..+|.|++||.. |..+ ..+..     ....
T Consensus       141 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~  215 (343)
T 3lrv_A          141 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEA  215 (343)
T ss_dssp             EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTS
T ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCC
Confidence            4455677777 777633211          146678999999999999999999999986 4433 34433     1145


Q ss_pred             eEEEEEeecC
Q psy14042        213 EIAALKYYLN  222 (238)
Q Consensus       213 ~i~~~~w~~~  222 (238)
                      +|.++.|..+
T Consensus       216 ~v~~l~fs~~  225 (343)
T 3lrv_A          216 KIKEVKFADN  225 (343)
T ss_dssp             CEEEEEECTT
T ss_pred             CEEEEEEeCC
Confidence            7778887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.93  E-value=0.38  Score=41.02  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             eEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~  212 (238)
                      ..+.++.||. |+|.-.-.+           ..+..+.|+|++..+..|..+|.|++||. .|..+..+.-|      ..
T Consensus       254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h------~~  327 (354)
T 2pbi_B          254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH------EN  327 (354)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC------SS
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC------CC
Confidence            4567788888 999743221           13457899999999999999999999997 57766554433      45


Q ss_pred             eEEEEEeecCC
Q psy14042        213 EIAALKYYLNR  223 (238)
Q Consensus       213 ~i~~~~w~~~~  223 (238)
                      +|.++.|....
T Consensus       328 ~v~~l~~spdg  338 (354)
T 2pbi_B          328 RVSTLRVSPDG  338 (354)
T ss_dssp             CEEEEEECTTS
T ss_pred             cEEEEEECCCC
Confidence            78899987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.91  E-value=0.14  Score=46.17  Aligned_cols=50  Identities=18%  Similarity=0.341  Sum_probs=41.8

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+||++.+..|..+|.|+|||..|..+..+.-|      ..+|.+|.|..
T Consensus        18 ~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh------~~~V~~l~fsp   67 (577)
T 2ymu_A           18 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------SSSVWGVAFSP   67 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECC------SSCEEEEEECT
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCC------CCCEEEEEECC
Confidence            788999999999999999999999999999888776654      34567777654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.83  E-value=0.4  Score=40.43  Aligned_cols=72  Identities=14%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      .+..+.++.+|. ++|..+-.+         ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..
T Consensus       154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------~~  227 (340)
T 1got_B          154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH------ES  227 (340)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC------SS
T ss_pred             CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------cC
Confidence            344566777887 888643211         156778999999999999999999999974 5555544433      33


Q ss_pred             eEEEEEeec
Q psy14042        213 EIAALKYYL  221 (238)
Q Consensus       213 ~i~~~~w~~  221 (238)
                      +|.++.|..
T Consensus       228 ~v~~v~~~p  236 (340)
T 1got_B          228 DINAICFFP  236 (340)
T ss_dssp             CEEEEEECT
T ss_pred             CEEEEEEcC
Confidence            566666654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.78  E-value=0.31  Score=42.47  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=54.1

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      +.+.++.+|. ++|...-..         ..+..+.|+|++..+.-|..+|.|++||.. |..+..+.-|      ...|
T Consensus       310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h------~~~v  383 (410)
T 1vyh_C          310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------EHFV  383 (410)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC------SSCE
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcE
Confidence            5667888887 888643211         146788999999999999999999999985 5556665544      4578


Q ss_pred             EEEEeecCC
Q psy14042        215 AALKYYLNR  223 (238)
Q Consensus       215 ~~~~w~~~~  223 (238)
                      .++.|....
T Consensus       384 ~~l~~~~~~  392 (410)
T 1vyh_C          384 TSLDFHKTA  392 (410)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEcCCC
Confidence            999997654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=93.72  E-value=0.42  Score=40.28  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             eEEeecccCc-eeeeccc-----------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecC
Q psy14042        146 AVIVGSVDGN-RIWGKEF-----------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSG  206 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~-----------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~  206 (238)
                      ..+.++.||. ++|...-                 .. .+..+.|+|++..+.-|..+|.|++||.. |..+..+.-+  
T Consensus        41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--  117 (343)
T 2xzm_R           41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--  117 (343)
T ss_dssp             EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC--
T ss_pred             EEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--
Confidence            4567788887 8886421                 11 46788999999999999999999999974 6666555433  


Q ss_pred             CCCCceeEEEEEeec
Q psy14042        207 PGSEMGEIAALKYYL  221 (238)
Q Consensus       207 ~~~~~~~i~~~~w~~  221 (238)
                          ..+|.++.|..
T Consensus       118 ----~~~v~~v~~sp  128 (343)
T 2xzm_R          118 ----QSEVYSVAFSP  128 (343)
T ss_dssp             ----CSCEEEEEECS
T ss_pred             ----CCcEEEEEECC
Confidence                34566666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.66  E-value=0.37  Score=40.49  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|...-..         ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..+|
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h------~~~v  293 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH------QDQV  293 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCE
T ss_pred             EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC------CCcE
Confidence            4567788887 888643211         146788999999999999999999999985 5555544333      4578


Q ss_pred             EEEEeecCC
Q psy14042        215 AALKYYLNR  223 (238)
Q Consensus       215 ~~~~w~~~~  223 (238)
                      .++.|..+.
T Consensus       294 ~~v~~s~~g  302 (321)
T 3ow8_A          294 WGVKYNGNG  302 (321)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            899997643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.58  E-value=0.38  Score=40.83  Aligned_cols=73  Identities=18%  Similarity=0.323  Sum_probs=53.0

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCc
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~  211 (238)
                      ..+.++.+|. ++|...            ... .+..+.|+| ++..+..|..+|.|++||..|..+..+..+.   ...
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~  163 (383)
T 3ei3_B           88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD-AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD---SWD  163 (383)
T ss_dssp             EEEEEEBTSCEEEEETTSTTCEEEECCCSTTC-BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC---CSS
T ss_pred             EEEEEcCCCeEEEEeCCCcccceeeecCCcCC-ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC---CCC
Confidence            5667777887 888654            232 677889999 7799999999999999999986665554331   123


Q ss_pred             eeEEEEEeecC
Q psy14042        212 GEIAALKYYLN  222 (238)
Q Consensus       212 ~~i~~~~w~~~  222 (238)
                      ..|.++.|...
T Consensus       164 ~~v~~~~~~~~  174 (383)
T 3ei3_B          164 YWYCCVDVSVS  174 (383)
T ss_dssp             CCEEEEEEETT
T ss_pred             CCeEEEEECCC
Confidence            56777777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.53  E-value=0.21  Score=41.57  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=41.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||. .|..+..+.-+      ..+|.++.|...
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~   85 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH------TGTIWSIDVDCF   85 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc------CCcEEEEEEcCC
Confidence            7888999999999999999999999996 56666665543      456888888753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.46  E-value=0.46  Score=39.71  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             ceEEeecccCc-eeeecc---------c------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        145 SAVIVGSVDGN-RIWGKE---------F------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~---------~------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ...+.++.||. ++|...         +      .. .+..+.|+|++..+.-|..+|.|++||.. |..+..+.-+   
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h---  106 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH---  106 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC---
Confidence            35567788887 888432         1      22 56678999999999999999999999974 6666555433   


Q ss_pred             CCCceeEEEEEeec
Q psy14042        208 GSEMGEIAALKYYL  221 (238)
Q Consensus       208 ~~~~~~i~~~~w~~  221 (238)
                         ..+|.++.|..
T Consensus       107 ---~~~v~~~~~~~  117 (319)
T 3frx_A          107 ---KSDVMSVDIDK  117 (319)
T ss_dssp             ---SSCEEEEEECT
T ss_pred             ---CCcEEEEEEcC
Confidence               33566666644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=93.36  E-value=0.55  Score=38.03  Aligned_cols=73  Identities=11%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCce
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~  212 (238)
                      .+..+.+..+|. ++|...-.+         ..+....|+|++ .+..|..+|.|++||. .|..+..+..+      ..
T Consensus       195 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~  267 (313)
T 3odt_A          195 DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP------AI  267 (313)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS------SS
T ss_pred             CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc------Cc
Confidence            344566777777 787644211         146678899998 6889999999999996 57767666654      34


Q ss_pred             eEEEEEeecCC
Q psy14042        213 EIAALKYYLNR  223 (238)
Q Consensus       213 ~i~~~~w~~~~  223 (238)
                      +|.++.|....
T Consensus       268 ~i~~~~~~~~~  278 (313)
T 3odt_A          268 SIWSVDCMSNG  278 (313)
T ss_dssp             CEEEEEECTTS
T ss_pred             eEEEEEEccCC
Confidence            68888886643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.29  E-value=0.36  Score=41.62  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=48.9

Q ss_pred             eEEeecccCc-eeeeccc-----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKEF-----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~-----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      ..+.+..+|. ++|...-           . ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..
T Consensus       105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~  177 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSGSVSALAETDES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH------QA  177 (401)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SS
T ss_pred             CEEEEECCCeEEEeeCCCCcEeEeeecCCC-CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC------CC
Confidence            3445566666 7775431           2 257788999999999999999999999975 6656655433      45


Q ss_pred             eEEEEEe
Q psy14042        213 EIAALKY  219 (238)
Q Consensus       213 ~i~~~~w  219 (238)
                      +|.++.|
T Consensus       178 ~v~~~~~  184 (401)
T 4aez_A          178 RVGCLSW  184 (401)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEE
Confidence            6888888

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.28  E-value=0.42  Score=40.46  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             eEEeecccCc-eeeecccc------------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCc
Q psy14042        146 AVIVGSVDGN-RIWGKEFK------------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEM  211 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~------------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~  211 (238)
                      ..+.++.||. ++|..+-.            ...+..+.|+|++..+..|..+|.|.+||.... +.....+.   + ..
T Consensus        30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---~-h~  105 (345)
T 3fm0_A           30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE---G-HE  105 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC---C-CS
T ss_pred             EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc---C-CC
Confidence            4456677887 88854311            015778899999999999999999999997543 22111111   1 13


Q ss_pred             eeEEEEEeecC
Q psy14042        212 GEIAALKYYLN  222 (238)
Q Consensus       212 ~~i~~~~w~~~  222 (238)
                      .+|.++.|...
T Consensus       106 ~~v~~v~~sp~  116 (345)
T 3fm0_A          106 NEVKSVAWAPS  116 (345)
T ss_dssp             SCEEEEEECTT
T ss_pred             CCceEEEEeCC
Confidence            46777777653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.27  E-value=0.21  Score=42.28  Aligned_cols=50  Identities=12%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-e----eeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-F----MNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~----~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|..+|.|++||.... .    +..+.-+      ..+|.++.|..
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~s~  261 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS------QLPLRSLLWAN  261 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS------SSCEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC------CCceEEEEEcC
Confidence            4778899999999999999999999998643 3    3333332      33566666654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.26  E-value=0.66  Score=43.26  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=50.1

Q ss_pred             ceEEeecccCc-eeeecc---------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        145 SAVIVGSVDGN-RIWGKE---------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~---------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ...+.++.||. ++|.-.               ... .+..+.|+|++..+..|..+|.|+|||.. |..+..+.-|   
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h---  471 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH---  471 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC---
Confidence            35667888998 999532               112 46788999999999999999999999975 5555544433   


Q ss_pred             CCCceeEEEEEeec
Q psy14042        208 GSEMGEIAALKYYL  221 (238)
Q Consensus       208 ~~~~~~i~~~~w~~  221 (238)
                         ..+|.++.|..
T Consensus       472 ---~~~v~~~~~s~  482 (694)
T 3dm0_A          472 ---TKDVLSVAFSL  482 (694)
T ss_dssp             ---SSCEEEEEECT
T ss_pred             ---CCCEEEEEEeC
Confidence               33566666654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.17  E-value=0.47  Score=40.18  Aligned_cols=58  Identities=10%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCC---------------ceeEEEEEeecCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSE---------------MGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~---------------~~~i~~~~w~~~~  223 (238)
                      .+..+.|+|++..+..|..+|.|++||.. |..+..+..++.....               ..+|.++.|....
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            57788999999999999999999999984 6667776643322122               5689999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=93.16  E-value=0.31  Score=40.33  Aligned_cols=71  Identities=13%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             eEEeecccCc-eeeeccc-------------ceeeeEEEEeCCCCC-eEEEEeeCceEEEEeC-CCCeeeeeeeecCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKEF-------------KKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGS  209 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~-------------~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~  209 (238)
                      ..++++.+|. ++|...-             .. .+..+.|+|++. .+..|..+|.|++||. .+.....+.-.    .
T Consensus        25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~   99 (342)
T 1yfq_A           25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN----E   99 (342)
T ss_dssp             EEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC----C
T ss_pred             EEEEEcCCCeEEEEEeCCCCccccceeeeecCC-ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc----C
Confidence            3445566665 6665321             22 567889999999 9999999999999998 76655444330    0


Q ss_pred             CceeEEEEEeec
Q psy14042        210 EMGEIAALKYYL  221 (238)
Q Consensus       210 ~~~~i~~~~w~~  221 (238)
                      ...+|.++.|..
T Consensus       100 ~~~~v~~l~~~~  111 (342)
T 1yfq_A          100 ANLGICRICKYG  111 (342)
T ss_dssp             CCSCEEEEEEET
T ss_pred             CCCceEEEEeCC
Confidence            245788888876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.14  E-value=0.48  Score=39.80  Aligned_cols=47  Identities=28%  Similarity=0.577  Sum_probs=35.8

Q ss_pred             eEEeecccCc-eeeecc-----------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC
Q psy14042        146 AVIVGSVDGN-RIWGKE-----------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY  193 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~-----------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~  193 (238)
                      ..+.++.+|. ++|..+                 -.. .+..+.|+|++..+..|..+|.|++||.
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            3456667776 888541                 122 5778899999999999999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.10  E-value=0.53  Score=39.27  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=41.6

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+....|+|++..+..|..+|.|++||. .|..+..+..+      ..+|.++.|...
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~  255 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE------TLPLLAVTFITE  255 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS------SCCEEEEEEEET
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC------CCCeEEEEEecC
Confidence            5778899999999999999999999999 57777666544      446888888754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.03  E-value=0.45  Score=39.43  Aligned_cols=70  Identities=11%  Similarity=0.224  Sum_probs=49.4

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|.-+-..         ..+....|+|+++.+..|..+|.|++||.. |..+..+.-+      ...|
T Consensus        27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h------~~~v  100 (304)
T 2ynn_A           27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYI  100 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred             EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC------CCcE
Confidence            4456677887 888643211         146678899999999999999999999975 6666655544      3345


Q ss_pred             EEEEeec
Q psy14042        215 AALKYYL  221 (238)
Q Consensus       215 ~~~~w~~  221 (238)
                      -++.|..
T Consensus       101 ~~~~~~~  107 (304)
T 2ynn_A          101 RSIAVHP  107 (304)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            5666654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.00  E-value=0.5  Score=40.40  Aligned_cols=69  Identities=9%  Similarity=0.116  Sum_probs=48.9

Q ss_pred             eEEeecccCc-eeeecc----c------ceeeeEEEEeCCCC-CeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCcee
Q psy14042        146 AVIVGSVDGN-RIWGKE----F------KKTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~----~------~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~  213 (238)
                      +.+.++.+|. ++|..+    +      .. .+..+.|+|++ .++.-|..+|.|+|||.....+.++.-|      ...
T Consensus       229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H------~~~  301 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH------RDF  301 (344)
T ss_dssp             EEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC------SSC
T ss_pred             ceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC------CCC
Confidence            4456778887 888532    1      22 57788999998 4677899999999999976655444322      446


Q ss_pred             EEEEEeec
Q psy14042        214 IAALKYYL  221 (238)
Q Consensus       214 i~~~~w~~  221 (238)
                      |.++.|..
T Consensus       302 V~~v~~sp  309 (344)
T 4gqb_B          302 VRDATWSP  309 (344)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            88888864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.94  E-value=0.38  Score=39.26  Aligned_cols=70  Identities=16%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             eEEeecccCc-eeeecc--------------cceeeeEEEEeCC--CCCeEEEEeeCceEEEEeCCCC----------ee
Q psy14042        146 AVIVGSVDGN-RIWGKE--------------FKKTSMLGVQWTS--DSQNLLFAIKGGQVHLYDYEGN----------FM  198 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~--------------~~~~~~~~~~~~~--~~~~~~~g~~~g~~~~~d~~g~----------~~  198 (238)
                      ..+.++.+|. ++|.-.              .. ..+..+.|+|  ++..+..|..+|.|++||....          .+
T Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~  103 (351)
T 3f3f_A           25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL  103 (351)
T ss_dssp             EEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred             EEEEeeCCCeEEEEECCCCCCcceecceeccCC-CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence            4456677776 888532              12 2578889999  5899999999999999998653          22


Q ss_pred             eeeeeecCCCCCceeEEEEEeecC
Q psy14042        199 NKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       199 ~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      ..+.-+      ..+|.++.|...
T Consensus       104 ~~~~~~------~~~v~~~~~~~~  121 (351)
T 3f3f_A          104 CTLNDS------KGSLYSVKFAPA  121 (351)
T ss_dssp             EEECCC------SSCEEEEEECCG
T ss_pred             eeeccc------CCceeEEEEcCC
Confidence            222222      456777877764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.88  E-value=0.55  Score=38.85  Aligned_cols=71  Identities=10%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|.-+-.+         ..+....|+|++..+..|..+|.|++||.. |..+..+..+      ...+
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~~~  273 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG------LERS  273 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS------SSSE
T ss_pred             EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC------CccE
Confidence            4567788888 999644221         145677899999999999999999999985 6666665543      3456


Q ss_pred             EEEEeecC
Q psy14042        215 AALKYYLN  222 (238)
Q Consensus       215 ~~~~w~~~  222 (238)
                      .++.|+..
T Consensus       274 ~~~~~~~~  281 (304)
T 2ynn_A          274 WCIATHPT  281 (304)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            77777654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.88  E-value=0.42  Score=40.19  Aligned_cols=70  Identities=20%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|.-+-.+         ..+..+.|+|+++.+..|..+|.|++||.. |..+..+.-+      ..+|
T Consensus       136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h------~~~v  209 (321)
T 3ow8_A          136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH------AMPI  209 (321)
T ss_dssp             EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCC
T ss_pred             EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc------CCce
Confidence            3445566666 666543211         146778999999999999999999999975 6555555433      3345


Q ss_pred             EEEEeec
Q psy14042        215 AALKYYL  221 (238)
Q Consensus       215 ~~~~w~~  221 (238)
                      -++.|..
T Consensus       210 ~~l~~sp  216 (321)
T 3ow8_A          210 RSLTFSP  216 (321)
T ss_dssp             CEEEECT
T ss_pred             eEEEEcC
Confidence            5566644

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.83  E-value=0.47  Score=40.53  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             cceEEeecccCc-eeeeccc--------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        144 ASAVIVGSVDGN-RIWGKEF--------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~--------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ++..++++.+|. ++|.-.-              .. .+..+.|+|++..+..|..+|.|++||.. |..+..+..+   
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h---  180 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH---  180 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---
Confidence            344556777787 8884211              22 57788999999999999999999999985 5556555443   


Q ss_pred             CCCceeEEEEEeec
Q psy14042        208 GSEMGEIAALKYYL  221 (238)
Q Consensus       208 ~~~~~~i~~~~w~~  221 (238)
                         ...|-++.|..
T Consensus       181 ---~~~v~~v~~s~  191 (357)
T 4g56_B          181 ---SSEVNCVAACP  191 (357)
T ss_dssp             ---SSCEEEEEECT
T ss_pred             ---CCCEEEEEEcc
Confidence               33455566543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.77  E-value=0.24  Score=43.12  Aligned_cols=69  Identities=14%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             ceEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~  211 (238)
                      .+..++. ++. ++|...-.           ...+..+.|+|++..+..|+.+|.|++||.. |..+..+.-+      .
T Consensus       117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h------~  189 (420)
T 4gga_A          117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH------S  189 (420)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------S
T ss_pred             CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC------C
Confidence            3445554 555 88864311           1147889999999999999999999999985 6656555443      3


Q ss_pred             eeEEEEEee
Q psy14042        212 GEIAALKYY  220 (238)
Q Consensus       212 ~~i~~~~w~  220 (238)
                      ..+.++.|.
T Consensus       190 ~~v~~~s~~  198 (420)
T 4gga_A          190 ARVGSLSWN  198 (420)
T ss_dssp             SCEEEEEEE
T ss_pred             CceEEEeeC
Confidence            456666664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.77  E-value=0.47  Score=40.92  Aligned_cols=71  Identities=21%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             eEEeecccCc-eeeeccc----------------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEF----------------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV  201 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~----------------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~  201 (238)
                      ..+.++.+|. ++|.-.-                      .. .+..+.|++++..+..|..+|.|++||.. |..+..+
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence            4566778887 8885321                      11 36678999999999999999999999974 7666655


Q ss_pred             eeecCCCCCceeEEEEEeecCC
Q psy14042        202 SMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       202 ~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .-|      ...|.++.|..+.
T Consensus       349 ~~h------~~~v~~v~~~~~~  364 (393)
T 1erj_A          349 QGH------RNSVISVAVANGS  364 (393)
T ss_dssp             ECC------SSCEEEEEECSSC
T ss_pred             CCC------CCCEEEEEecCCc
Confidence            544      4568888887643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.73  E-value=0.61  Score=39.14  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             eEEeecccCc-eeeeccc-------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042        146 AVIVGSVDGN-RIWGKEF-------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE  194 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~-------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~  194 (238)
                      ..+.++.||. ++|...-             ....+..+.|+|++..+..|..+|.|++||..
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            5566777877 7774321             01157788999999999999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=92.47  E-value=0.39  Score=41.27  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             eEEeecccCc-eeeecccce----------------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK----------------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~----------------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ..+.++.||. ++|...-..                ..+..+.|+|++..+..|..+|.|++||.. |..+..+..  ..
T Consensus       263 ~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~  340 (380)
T 3iz6_a          263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--LQ  340 (380)
T ss_dssp             EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC--SC
T ss_pred             eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec--cc
Confidence            4567788888 999754321                015678999999999999999999999974 555544421  11


Q ss_pred             CCCceeEEEEEeecC
Q psy14042        208 GSEMGEIAALKYYLN  222 (238)
Q Consensus       208 ~~~~~~i~~~~w~~~  222 (238)
                      ......|.++.|...
T Consensus       341 ~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          341 NSHEGRISCLGLSSD  355 (380)
T ss_dssp             SSCCCCCCEEEECSS
T ss_pred             CCCCCceEEEEECCC
Confidence            222456777877654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.36  E-value=0.75  Score=37.57  Aligned_cols=71  Identities=11%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             eEEeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAA  216 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~  216 (238)
                      ..+.++.+|. ++|..+-.+        ..+....|+|++..+..|+.+|.|++||..+.....+.-+      ..+|.+
T Consensus       197 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~------~~~v~~  270 (337)
T 1gxr_A          197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH------ESCVLS  270 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC------SSCEEE
T ss_pred             EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC------ccceeE
Confidence            3445566666 676543211        1467789999999999999999999999987654433322      446777


Q ss_pred             EEeecC
Q psy14042        217 LKYYLN  222 (238)
Q Consensus       217 ~~w~~~  222 (238)
                      +.|...
T Consensus       271 ~~~~~~  276 (337)
T 1gxr_A          271 LKFAYC  276 (337)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            777653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=92.28  E-value=0.86  Score=38.36  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=39.0

Q ss_pred             eEEeecccCc-eeeecc--------------------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042        146 AVIVGSVDGN-RIWGKE--------------------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE  194 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~--------------------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~  194 (238)
                      +.+.+..+|. ++|...                          .. ..+....|+|++..+..|..+|.|++||..
T Consensus       201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN-GKVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc-CceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            4567778887 888642                          23 268889999999999999999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.10  E-value=0.99  Score=37.90  Aligned_cols=69  Identities=6%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCCCC----------CeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDS----------QNLLFAIKGGQVHLYDYEGNFMNKVS  202 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~d~~g~~~~~~~  202 (238)
                      ..+.++.+|. ++|.-.            ... .+..+.|+|++          ..+..|..+|.|++||..+.....+.
T Consensus       132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  210 (343)
T 2xzm_R          132 QILSAGAEREIKLWNILGECKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK  210 (343)
T ss_dssp             EEEEEETTSCEEEEESSSCEEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE
T ss_pred             EEEEEcCCCEEEEEeccCCceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc
Confidence            4456677887 888642            222 57788999987          67889999999999997766554443


Q ss_pred             eecCCCCCceeEEEEEeec
Q psy14042        203 MWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       203 ~~~~~~~~~~~i~~~~w~~  221 (238)
                      -+      ..+|.++.|..
T Consensus       211 ~h------~~~v~~~~~s~  223 (343)
T 2xzm_R          211 AH------ESNVNHLSISP  223 (343)
T ss_dssp             CC------SSCEEEEEECT
T ss_pred             Cc------cccceEEEECC
Confidence            33      23455666644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.05  E-value=0.3  Score=45.95  Aligned_cols=51  Identities=14%  Similarity=0.289  Sum_probs=42.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|+|||. .|..+..+..+      ..+|.++.|...
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~   66 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT------ETPVRAGKFIAR   66 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGG
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC------CCcEEEEEEeCC
Confidence            7888999999999999999999999995 57677766644      456888888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.02  E-value=0.53  Score=44.23  Aligned_cols=71  Identities=13%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCcee
Q psy14042        146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~  213 (238)
                      ..+++..+|. ++|.-.          .. ..+....|+|++..+..|..+|.|++||. .|..+..+.-+      ..+
T Consensus        27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~   99 (814)
T 3mkq_A           27 WVLTTLYSGRVEIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDY   99 (814)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSC
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCC
Confidence            3445556665 666532          12 25778899999999999999999999996 47666666544      446


Q ss_pred             EEEEEeecCC
Q psy14042        214 IAALKYYLNR  223 (238)
Q Consensus       214 i~~~~w~~~~  223 (238)
                      |.++.|....
T Consensus       100 v~~~~~s~~~  109 (814)
T 3mkq_A          100 IRSIAVHPTK  109 (814)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEeCCC
Confidence            7888886543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=91.95  E-value=0.45  Score=39.16  Aligned_cols=51  Identities=12%  Similarity=0.201  Sum_probs=40.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||.. |.+...+.-+      ..+|.++.|...
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~   76 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSD   76 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC------CCceEEEEEcCC
Confidence            67889999999999999999999999984 6666555433      446777777653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.92  E-value=0.41  Score=39.05  Aligned_cols=50  Identities=6%  Similarity=0.131  Sum_probs=38.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-----eeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-----FMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-----~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|..+|.|++||....     .+..+.-+      ..+|.++.|..
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~   67 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH------DSSIVAIDWAS   67 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC------SSCEEEEEECC
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC------CCcEEEEEEcC
Confidence            7889999999999999999999999998743     22222222      45788888875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.91  E-value=0.32  Score=40.70  Aligned_cols=51  Identities=16%  Similarity=0.424  Sum_probs=40.0

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC---eeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN---FMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~---~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+....|+|++..+..|..+|.|++||..+.   .+..+.-+      ..+|.++.|...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~   63 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------NGQVTGVDWAPD   63 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC------SSCEEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC------CCcccEEEEeCC
Confidence            6788899999999999999999999999766   44444322      446888888753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.91  E-value=0.93  Score=38.28  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             eEEeecccCc-eeeeccc----------------ceeeeEEEEeCCCCCeEEEEeeC---ceEEEEeC-CCCeeeeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEF----------------KKTSMLGVQWTSDSQNLLFAIKG---GQVHLYDY-EGNFMNKVSMW  204 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~----------------~~~~~~~~~~~~~~~~~~~g~~~---g~~~~~d~-~g~~~~~~~~~  204 (238)
                      ..+++..+|. ++|...-                . ..+....|+|++..+..|..+   |.|++||. .|..+..+.-.
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~-~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             eEEEEeCCCcEEEEECCCCceeEEEeccccccccC-CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence            5556677776 7776431                2 256778999999999999999   99999997 56666665541


Q ss_pred             cCCC-------CCceeEEEEEeecC
Q psy14042        205 SGPG-------SEMGEIAALKYYLN  222 (238)
Q Consensus       205 ~~~~-------~~~~~i~~~~w~~~  222 (238)
                      ..+.       ....+|.++.|...
T Consensus       278 ~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          278 THSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             --------CCBSBSSCEEEEEECSS
T ss_pred             cccccccccccccCCcEEEEEECCC
Confidence            0000       02457888888753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.89  E-value=0.23  Score=44.07  Aligned_cols=72  Identities=7%  Similarity=0.060  Sum_probs=52.1

Q ss_pred             EeecccCc-eeeec------ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee-eeeeecCCC-----CCceeE
Q psy14042        148 IVGSVDGN-RIWGK------EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN-KVSMWSGPG-----SEMGEI  214 (238)
Q Consensus       148 ~~~~~~g~-rv~g~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~-~~~~~~~~~-----~~~~~i  214 (238)
                      .+...+|. .+|.-      .+.. .+.++.|+|++  +.+|..+|.+++|+..|..+. +-.+++.+.     .+...+
T Consensus       140 av~~~dG~L~v~dl~~~~~~~~~~-~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V  216 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKSTKQLAQ-NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSP  216 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE-SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEE
T ss_pred             EEEECCCCEEEEEccCCccccccC-CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeE
Confidence            33455666 66522      2333 78899999999  789999999999999998865 445655432     136889


Q ss_pred             EEEEeecC
Q psy14042        215 AALKYYLN  222 (238)
Q Consensus       215 ~~~~w~~~  222 (238)
                      .+|.|-.+
T Consensus       217 ~sI~wl~~  224 (388)
T 1xip_A          217 LSVTILSP  224 (388)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEecC
Confidence            99999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=91.89  E-value=1  Score=39.28  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             ecceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042        143 RASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       143 ~~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~  211 (238)
                      .....+.++.+|. ++|...-.+         ..+..+.|++++ .+..|..+|.|++||.. |..+..+.-+      .
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h------~  203 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH------N  203 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC------S
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC------C
Confidence            4466778888998 999743211         256778899887 89999999999999985 5555544433      4


Q ss_pred             eeEEEEEeec
Q psy14042        212 GEIAALKYYL  221 (238)
Q Consensus       212 ~~i~~~~w~~  221 (238)
                      .+|.++.|..
T Consensus       204 ~~v~~l~~~~  213 (464)
T 3v7d_B          204 STVRCLDIVE  213 (464)
T ss_dssp             SCEEEEEEEE
T ss_pred             CccEEEEEec
Confidence            4677777764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=91.80  E-value=0.34  Score=41.60  Aligned_cols=51  Identities=6%  Similarity=0.023  Sum_probs=39.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee-eeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV-SMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~-~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|+++.+..|..+|.|+|||.. |..+..+ .-|      ..+|.++.|...
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH------~~~V~~v~fSpd  323 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH------SFAITEVTISPD  323 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS------SSCEEEEEECTT
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc------cCCEEEEEECCC
Confidence            46788999999999999999999999985 6655543 333      457888888654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.77  E-value=0.9  Score=37.80  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             ceEEeecccCc-eeeecccc-------------eeeeEEEEeCCC---CCeEEEEeeCceEEEEeCCCCe-eeeeeeecC
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK-------------KTSMLGVQWTSD---SQNLLFAIKGGQVHLYDYEGNF-MNKVSMWSG  206 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~-------------~~~~~~~~~~~~---~~~~~~g~~~g~~~~~d~~g~~-~~~~~~~~~  206 (238)
                      ...+.++.+|. ++|...-.             ...+....|+|+   +..+..|..+|.|++||..... .....+...
T Consensus       173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  252 (379)
T 3jrp_A          173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  252 (379)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence            45567778887 88842210             125678899999   8999999999999999986432 111222211


Q ss_pred             CCCCceeEEEEEeecC
Q psy14042        207 PGSEMGEIAALKYYLN  222 (238)
Q Consensus       207 ~~~~~~~i~~~~w~~~  222 (238)
                      . ....+|.++.|...
T Consensus       253 ~-~~~~~v~~~~~s~~  267 (379)
T 3jrp_A          253 E-KFPDVLWRASWSLS  267 (379)
T ss_dssp             S-CCSSCEEEEEECSS
T ss_pred             c-cCCCcEEEEEEcCC
Confidence            1 12456778888654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.73  E-value=0.79  Score=37.94  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             eEEeecccCc-eeeecc----------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      ..+.+..+|. ++|...          ... .+..+.|+| ++..+..|..+|.|++||.. |..+..+...   .....
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~  162 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---EGHRD  162 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST---TSCSS
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc---ccccC
Confidence            3445556665 666532          122 567789999 89999999999999999986 5544443210   11245


Q ss_pred             eEEEEEeecC
Q psy14042        213 EIAALKYYLN  222 (238)
Q Consensus       213 ~i~~~~w~~~  222 (238)
                      .|.++.|...
T Consensus       163 ~v~~~~~~~~  172 (366)
T 3k26_A          163 EVLSADYDLL  172 (366)
T ss_dssp             CEEEEEECTT
T ss_pred             ceeEEEECCC
Confidence            7888888754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=91.60  E-value=0.76  Score=39.51  Aligned_cols=71  Identities=15%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             ceEEeecccCc-eeeecccce----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKK----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      ...+.++.+|. ++|.-....          ..+....|+|++..+..|..+|.|++||.. |..+..+.-+      ..
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~  260 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH------NA  260 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC------SS
T ss_pred             CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC------cc
Confidence            45566777777 777654211          256778999999999999999999999986 4444444322      33


Q ss_pred             eEEEEEeec
Q psy14042        213 EIAALKYYL  221 (238)
Q Consensus       213 ~i~~~~w~~  221 (238)
                      +|.++.|..
T Consensus       261 ~v~~~~~~p  269 (401)
T 4aez_A          261 AVKAVAWCP  269 (401)
T ss_dssp             CCCEEEECT
T ss_pred             eEEEEEECC
Confidence            455666654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.56  E-value=0.65  Score=38.68  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=48.2

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSE  210 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~  210 (238)
                      ..+.+..+|. ++|.-.            ... .+..+.|+++  +..+..|..+|.|++||........+.....   .
T Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~  100 (379)
T 3jrp_A           25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV---H  100 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC---C
T ss_pred             EEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC---C
Confidence            4455666776 777543            122 5677899988  8999999999999999997553222222211   1


Q ss_pred             ceeEEEEEeecC
Q psy14042        211 MGEIAALKYYLN  222 (238)
Q Consensus       211 ~~~i~~~~w~~~  222 (238)
                      ..+|.++.|...
T Consensus       101 ~~~v~~~~~~~~  112 (379)
T 3jrp_A          101 SASVNSVQWAPH  112 (379)
T ss_dssp             SSCEEEEEECCG
T ss_pred             CcceEEEEeCCC
Confidence            346777777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=91.49  E-value=0.77  Score=37.98  Aligned_cols=51  Identities=12%  Similarity=0.418  Sum_probs=39.9

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCC--CeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG--NFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g--~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+....|+|++..+..|..+|.|++||...  ..+..+..+      ..+|.++.|...
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~  229 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------EKSISDMQFSPD  229 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC------SSCEEEEEECTT
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------CCceeEEEECCC
Confidence            677889999999999999999999999974  445544443      456788888653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.42  E-value=0.97  Score=36.51  Aligned_cols=70  Identities=14%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             ceEEeecccCc-eeeecc---------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCcee
Q psy14042        145 SAVIVGSVDGN-RIWGKE---------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~---------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~  213 (238)
                      ...+.++.+|. ++|...         .. ..+....|+|++. +..|..+|.|++||.. |..+..+..+      ..+
T Consensus       156 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~  227 (313)
T 3odt_A          156 NKFLTASADKTIKLWQNDKVIKTFSGIHN-DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH------ESF  227 (313)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEECSSCS-SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC------SSC
T ss_pred             CEEEEEECCCCEEEEecCceEEEEeccCc-ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC------Cce
Confidence            45566677777 777532         22 2567789999988 8899999999999986 7777766544      456


Q ss_pred             EEEEEeecC
Q psy14042        214 IAALKYYLN  222 (238)
Q Consensus       214 i~~~~w~~~  222 (238)
                      |.++.|...
T Consensus       228 i~~~~~~~~  236 (313)
T 3odt_A          228 VYCIKLLPN  236 (313)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEecC
Confidence            788888754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=91.42  E-value=0.63  Score=39.89  Aligned_cols=57  Identities=23%  Similarity=0.437  Sum_probs=43.0

Q ss_pred             ceEEeecccCc-eeeecccc----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV  201 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~  201 (238)
                      ...+.++.||. ++|.-+..          ...+..+.|+|++..+..|..+|.|++||.. |..+..+
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            45667888888 99974321          0146788999999999999999999999986 4444433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.06  E-value=0.64  Score=40.59  Aligned_cols=57  Identities=26%  Similarity=0.536  Sum_probs=43.3

Q ss_pred             ceEEeecccCc-eeeecccc-----------eeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCeeeee
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNFMNKV  201 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~~~~~  201 (238)
                      .+.+.|+.+|. ++|.-...           ...+..+.|+| ++..+.-|..+|.|++||..|..+..+
T Consensus       133 ~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~  202 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF  202 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence            46778999998 99953211           11567889997 678899999999999999988765433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=90.95  E-value=1.1  Score=37.12  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=39.3

Q ss_pred             eeEEEEeCCC----CCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSD----SQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~----~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+....|+|+    +..+..|..+|.|++||.. |..+..+.-+      ..+|.++.|..
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~  125 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH------GNAINELKFHP  125 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC------CSCEEEEEECS
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC------CCcEEEEEECC
Confidence            3677889999    6689999999999999975 6666655533      45788888875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=90.86  E-value=0.96  Score=38.73  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             ceEEeecccCc-eeeecccc----------------eeeeEEEEeCCCC-CeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK----------------KTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYE-GNFMNKVSMWS  205 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~----------------~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~  205 (238)
                      ...+.++.+|. ++|.-.-.                ...+..+.|+|++ ..+..|..+|.|++||.. |..+..+... 
T Consensus        95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-  173 (402)
T 2aq5_A           95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-  173 (402)
T ss_dssp             TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-
T ss_pred             CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-
Confidence            34556677776 77764321                0156778999998 689999999999999975 5445444101 


Q ss_pred             CCCCCceeEEEEEeec
Q psy14042        206 GPGSEMGEIAALKYYL  221 (238)
Q Consensus       206 ~~~~~~~~i~~~~w~~  221 (238)
                         .....|.++.|..
T Consensus       174 ---~~~~~v~~~~~~~  186 (402)
T 2aq5_A          174 ---VHPDTIYSVDWSR  186 (402)
T ss_dssp             ---TCCSCEEEEEECT
T ss_pred             ---CCCCceEEEEECC
Confidence               1144677888865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.74  E-value=0.76  Score=39.04  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=38.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCC-----CeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-----NFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-----~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|..+|.|++||...     ..+..+.-+      ..+|.++.|..
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~  123 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH------SSSVKTVKFNA  123 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS------SSCCCEEEECS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC------ccceEEEEEcC
Confidence            678899999999999999999999999976     234333322      34577777764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=90.65  E-value=1.1  Score=41.08  Aligned_cols=75  Identities=20%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             EEeecccCc-eeeeccc----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCC-CCcee
Q psy14042        147 VIVGSVDGN-RIWGKEF----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPG-SEMGE  213 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~-~~~~~  213 (238)
                      .+.++.||. ++|...-          .. .+..+.|+|++..+..|..+|.|++||. .|..+..+.-..... .....
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            566778887 8886321          22 5778999999999999999999999995 566655442110000 12346


Q ss_pred             EEEEEeecC
Q psy14042        214 IAALKYYLN  222 (238)
Q Consensus       214 i~~~~w~~~  222 (238)
                      |.++.|...
T Consensus       242 V~~v~~spd  250 (611)
T 1nr0_A          242 VFGLTWSPD  250 (611)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEECCC
Confidence            777777653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=90.56  E-value=0.61  Score=40.19  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|+++.+..|..+|.|++||.. |..+..+.-+      ..+|.++.|...
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~p~  176 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFPS  176 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC------CCCEEEEEEcCC
Confidence            47789999999999999999999999986 4444444333      345777777643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.49  E-value=0.77  Score=39.64  Aligned_cols=70  Identities=4%  Similarity=-0.057  Sum_probs=49.1

Q ss_pred             eEEeecccCc-eeeecccce--------------eeeEEEEeCC--------CCCeEEEEeeCceEEEEeC-CCCeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK--------------TSMLGVQWTS--------DSQNLLFAIKGGQVHLYDY-EGNFMNKV  201 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~--------------~~~~~~~~~~--------~~~~~~~g~~~g~~~~~d~-~g~~~~~~  201 (238)
                      +...++.|+. |+|..+-..              ..+..+.|+|        |+.++.-|..++.|+|||. .|..+..+
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence            4456677887 888643221              1578889987        8899999999999999996 45555444


Q ss_pred             eeecCCCCCceeEEEEEeec
Q psy14042        202 SMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       202 ~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .-+      ..++.++.|..
T Consensus       183 ~~~------~~~v~~v~~~p  196 (393)
T 4gq1_A          183 YPL------SSPGISVQFRP  196 (393)
T ss_dssp             EEC------SSCEEEEEEET
T ss_pred             cCC------CCCcEEEEECC
Confidence            433      34567777764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=90.37  E-value=1.4  Score=37.19  Aligned_cols=50  Identities=18%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             eEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC
Q psy14042        146 AVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG  195 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g  195 (238)
                      ..+.++.+|. ++|...-.           ...+..+.|+|++..+..|..+|.|++||...
T Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            3445666776 77743211           01577889999999999999999999999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.26  E-value=1.3  Score=37.35  Aligned_cols=72  Identities=13%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             cceEEeecccCc-eeeeccc----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042        144 ASAVIVGSVDGN-RIWGKEF----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~  211 (238)
                      .+..+++..+|. ++|...-          .. .+....|+|++..+..|..+|.|++||.. |..+..+.-+      .
T Consensus       217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~  289 (425)
T 1r5m_A          217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH------S  289 (425)
T ss_dssp             TTEEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC------S
T ss_pred             CCEEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC------C
Confidence            455666777776 6665332          22 57788999999999999999999999975 5555544322      4


Q ss_pred             eeEEEEEeecC
Q psy14042        212 GEIAALKYYLN  222 (238)
Q Consensus       212 ~~i~~~~w~~~  222 (238)
                      .+|.++.|...
T Consensus       290 ~~i~~~~~~~~  300 (425)
T 1r5m_A          290 QSIVSASWVGD  300 (425)
T ss_dssp             SCEEEEEEETT
T ss_pred             ccEEEEEECCC
Confidence            46778888653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=90.00  E-value=0.87  Score=38.72  Aligned_cols=53  Identities=13%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCce-EEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQ-VHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~-~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|. |++||.. |..+..+..    +....+|.++.|...
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~----g~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR----GLDRADVVDMKWSTD  251 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC----TTCCSCEEEEEECTT
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----CCCCCcEEEEEECCC
Confidence            6788999999999999999998 9999996 777766652    101346777777653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.99  E-value=0.67  Score=38.19  Aligned_cols=49  Identities=6%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC---eeeeeeeecCCCCCceeEEEEEee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN---FMNKVSMWSGPGSEMGEIAALKYY  220 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~---~~~~~~~~~~~~~~~~~i~~~~w~  220 (238)
                      .+..+.|+|+++.+..|..+|.|+|||..+.   .+..+.-|      ..+|-++.|.
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH------~~~V~~v~~s   62 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH------EGPVWRVDWA   62 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC------SSCEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc------cCCeEEEEec
Confidence            6778899999999999999999999998643   33333322      3456677774

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.98  E-value=2.3  Score=35.96  Aligned_cols=37  Identities=22%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVS  202 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~  202 (238)
                      .+....|+|++..+..|..+|.|++||.. |..+..+.
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~  193 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH  193 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence            46788999999999999999999999974 66665554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=89.94  E-value=0.76  Score=39.94  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=40.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+.++.|+|++..+..|..+|.|+|||.. |.+...+.-|      ..+|.++.|..
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h------~~~V~~v~~~~  160 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDH  160 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc------CCcEEEEEEcC
Confidence            78899999999999999999999999974 7777666544      34577777754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=89.85  E-value=1.5  Score=38.07  Aligned_cols=70  Identities=16%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             ceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCcee
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~  213 (238)
                      ...+.++.+|. ++|...-.+         ..+....|+|++..+..|..+|.|++||. .|..+..+.-+      ..+
T Consensus       281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~  354 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH------TAL  354 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC------SSC
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC------CCc
Confidence            45667777887 888643211         24667899999999999999999999997 57777666544      345


Q ss_pred             EEEEEee
Q psy14042        214 IAALKYY  220 (238)
Q Consensus       214 i~~~~w~  220 (238)
                      |.++.|.
T Consensus       355 v~~~~~~  361 (464)
T 3v7d_B          355 VGLLRLS  361 (464)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            7777765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=89.62  E-value=2.9  Score=33.95  Aligned_cols=70  Identities=10%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             eEEeecccCc-eeeecc---------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKE---------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~---------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+++..+|. ++|...         ... .+....|+|++..+..|..+|.|++||.. |..+....       ...+|
T Consensus       238 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------~~~~v  309 (337)
T 1gxr_A          238 WLAVGMESSNVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------ESSSV  309 (337)
T ss_dssp             EEEEEETTSCEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CSSCE
T ss_pred             EEEEEcCCCcEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-------CCCcE
Confidence            3445555665 666533         232 57788999999999999999999999975 44442221       14568


Q ss_pred             EEEEeecCC
Q psy14042        215 AALKYYLNR  223 (238)
Q Consensus       215 ~~~~w~~~~  223 (238)
                      .++.|....
T Consensus       310 ~~~~~s~~~  318 (337)
T 1gxr_A          310 LSCDISVDD  318 (337)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            888887643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=89.56  E-value=0.59  Score=38.56  Aligned_cols=51  Identities=10%  Similarity=0.174  Sum_probs=39.3

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe----eeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF----MNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||.....    ...+.-+      ..+|.++.|...
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~   67 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY------KHPLLCCNFIDN   67 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC------SSCEEEEEEEES
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec------CCceEEEEECCC
Confidence            78889999999999999999999999986443    3222222      457888888754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=89.50  E-value=1.2  Score=36.68  Aligned_cols=49  Identities=22%  Similarity=0.470  Sum_probs=37.4

Q ss_pred             ceEEeecccCc-eeeecc---------------cceeeeEEEEeCCCCC-eEEEEeeCceEEEEeCC
Q psy14042        145 SAVIVGSVDGN-RIWGKE---------------FKKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYE  194 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~---------------~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~  194 (238)
                      ...+++..+|. ++|...               .. ..+..+.|+|++. ++..|..+|.|++||..
T Consensus       225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            44556677776 777542               12 2567889999998 89999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=89.47  E-value=2.8  Score=35.09  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             ceEEeecccCc-eeeecc-----------------------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCe
Q psy14042        145 SAVIVGSVDGN-RIWGKE-----------------------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNF  197 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~-----------------------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~  197 (238)
                      ...+.++.+|. ++|...                       ... .+..+.|+| ++..+..|..+|.|++||.....
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  133 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY-SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ  133 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS-CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC-cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence            34556777887 888654                       332 688899999 77799999999999999986443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=89.46  E-value=0.56  Score=40.39  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN  196 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~  196 (238)
                      .+..+.|+|++..+..|..+|.|+|||....
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~   60 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQE   60 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCC
Confidence            8899999999999999999999999998643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=89.43  E-value=1.3  Score=39.66  Aligned_cols=71  Identities=8%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             eEEeecccCc-eeeecc-----------cceeeeEEEEeCC----------CCCeEEEEeeCceEEEEeCCC--Ceeeee
Q psy14042        146 AVIVGSVDGN-RIWGKE-----------FKKTSMLGVQWTS----------DSQNLLFAIKGGQVHLYDYEG--NFMNKV  201 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~-----------~~~~~~~~~~~~~----------~~~~~~~g~~~g~~~~~d~~g--~~~~~~  201 (238)
                      ..+.++.+|. ++|...           .. ..+..+.|+|          ++..+..|..+|.|++||...  ..+..+
T Consensus       502 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  580 (615)
T 1pgu_A          502 YIAAGDVMGKILLYDLQSREVKTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  580 (615)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             EEEEcCCCCeEEEeeCCCCcceeEeecCCC-CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence            4556677777 787653           22 2678889999          999999999999999999964  344443


Q ss_pred             eeecCCCCCceeEEEEEeecCC
Q psy14042        202 SMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       202 ~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .-+      ..+|.++.|....
T Consensus       581 ~~h------~~~v~~l~~s~~~  596 (615)
T 1pgu_A          581 NAH------KDGVNNLLWETPS  596 (615)
T ss_dssp             TSS------TTCEEEEEEEETT
T ss_pred             hcC------ccceEEEEEcCCC
Confidence            333      4578999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=89.38  E-value=1.8  Score=37.26  Aligned_cols=70  Identities=9%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~  211 (238)
                      ..+.++.+|. ++|..+            -.. .+..+.|+|++..+..|+.+|.|++||.. |..+..+.+.     ..
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~  257 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-----DH  257 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-----TC
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-----CC
Confidence            4456666776 777542            122 67788999999999999999999999975 5555544432     13


Q ss_pred             eeEEEEEeec
Q psy14042        212 GEIAALKYYL  221 (238)
Q Consensus       212 ~~i~~~~w~~  221 (238)
                      .+|.++.|..
T Consensus       258 ~~v~~~~~~~  267 (437)
T 3gre_A          258 APITHVEVCQ  267 (437)
T ss_dssp             EEEEEEEECT
T ss_pred             CceEEEEecc
Confidence            4677776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.26  E-value=1.9  Score=35.36  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGN  196 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~  196 (238)
                      ..+.++.||. ++|...            -.. .+..+.|+++  +..+.-|..+|.|++||....
T Consensus        23 ~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~   87 (297)
T 2pm7_B           23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVMIWKEENG   87 (297)
T ss_dssp             EEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred             EEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence            3456677887 888532            122 5678899874  789999999999999998643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=89.00  E-value=2.1  Score=39.83  Aligned_cols=75  Identities=20%  Similarity=0.388  Sum_probs=49.9

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIA  215 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~  215 (238)
                      ..+.++.+|. ++|.-.-.+         ..+..+.|+|++..+..|..+|.|++||..|.....+..  ........|.
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~  521 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS  521 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred             EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence            4456778888 999643211         146788999999999999999999999987764433221  1111234566


Q ss_pred             EEEeecC
Q psy14042        216 ALKYYLN  222 (238)
Q Consensus       216 ~~~w~~~  222 (238)
                      ++.|..+
T Consensus       522 ~~~~~~~  528 (694)
T 3dm0_A          522 CVRFSPN  528 (694)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            6666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=88.84  E-value=1.4  Score=36.62  Aligned_cols=53  Identities=25%  Similarity=0.480  Sum_probs=40.5

Q ss_pred             ceEEeecccCc-eeeecc--------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC--CCCee
Q psy14042        145 SAVIVGSVDGN-RIWGKE--------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY--EGNFM  198 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~--------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~--~g~~~  198 (238)
                      ...+.++.||. ++|..+              ... .+..+.|+|++..+..|..+|.|++||.  .|...
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~  298 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV  298 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE
Confidence            34567788888 999532              122 5778999999999999999999999996  35443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=88.66  E-value=1.3  Score=35.87  Aligned_cols=39  Identities=15%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW  204 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~  204 (238)
                      .+..+.|+|+++.+..|+.+|.|++||.. |..+..+.-+
T Consensus        69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h  108 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH  108 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence            47788999999999999999999999985 5556555433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=88.28  E-value=1.3  Score=41.93  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSE  210 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~  210 (238)
                      ..+.++.+|. ++|...            -.. .+..+.|+|+  +..+..|..+|.|++||..+.....+.....   .
T Consensus        23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~---h   98 (753)
T 3jro_A           23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV---H   98 (753)
T ss_dssp             CEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC---C
T ss_pred             eEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC---C
Confidence            4456667776 777543            122 5778899988  9999999999999999987653222222211   1


Q ss_pred             ceeEEEEEeecC
Q psy14042        211 MGEIAALKYYLN  222 (238)
Q Consensus       211 ~~~i~~~~w~~~  222 (238)
                      ..+|.++.|...
T Consensus        99 ~~~V~~v~~sp~  110 (753)
T 3jro_A           99 SASVNSVQWAPH  110 (753)
T ss_dssp             SSCEEEEEECCG
T ss_pred             CCCeEEEEECCC
Confidence            446777777654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.98  E-value=2.3  Score=35.01  Aligned_cols=70  Identities=16%  Similarity=0.366  Sum_probs=45.9

Q ss_pred             eEEeecccCc-eeeecccce-----e---------eeEEEE----eCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecC
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK-----T---------SMLGVQ----WTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSG  206 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~-----~---------~~~~~~----~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~  206 (238)
                      ..+.++.+|. ++|...-..     .         .+..+.    |+|++..+..|..+|.|++||..........-+  
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--  208 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI--  208 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC--
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC--
Confidence            4556677777 888644321     0         233344    889999999999999999999976554333222  


Q ss_pred             CCCCceeEEEEEeec
Q psy14042        207 PGSEMGEIAALKYYL  221 (238)
Q Consensus       207 ~~~~~~~i~~~~w~~  221 (238)
                          ..+|.++.|..
T Consensus       209 ----~~~v~~~~~~~  219 (357)
T 3i2n_A          209 ----KNGVCSLEFDR  219 (357)
T ss_dssp             ----SSCEEEEEESC
T ss_pred             ----CCceEEEEcCC
Confidence                34677777765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=87.98  E-value=2.8  Score=35.61  Aligned_cols=48  Identities=6%  Similarity=-0.009  Sum_probs=34.3

Q ss_pred             EEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        170 VQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       170 ~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      ..|+|++..+..|..+|.|++||.. |..+..+..     ....+|.++.|...
T Consensus       253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~  301 (420)
T 3vl1_A          253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGN  301 (420)
T ss_dssp             TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSS
T ss_pred             eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-----ccCCCceeEEEeCC
Confidence            4578999999999999999999985 443433321     12346777877654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=87.92  E-value=2.4  Score=36.01  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=46.7

Q ss_pred             eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCC-eEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCcee
Q psy14042        146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGE  213 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~  213 (238)
                      ..+.++.+|. ++|...          ... .+..+.|+|++. ++.-|..+|.|+|||.+...+.+..-|      ..+
T Consensus       241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H------~~~  313 (357)
T 4g56_B          241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH------RDF  313 (357)
T ss_dssp             EEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC------SSC
T ss_pred             eEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC------CCC
Confidence            4556777776 777532          122 567889999874 677899999999999975443322212      346


Q ss_pred             EEEEEeec
Q psy14042        214 IAALKYYL  221 (238)
Q Consensus       214 i~~~~w~~  221 (238)
                      |.+|.|..
T Consensus       314 V~~vafsP  321 (357)
T 4g56_B          314 VTGVAWSP  321 (357)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            88888863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=87.71  E-value=2.7  Score=41.68  Aligned_cols=70  Identities=11%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI  214 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i  214 (238)
                      ..+.++.+|. ++|...-..         ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..+|
T Consensus       629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v  702 (1249)
T 3sfz_A          629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQV  702 (1249)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcE
Confidence            4456677887 888643211         256788999999999999999999999985 6666655533      3456


Q ss_pred             EEEEeec
Q psy14042        215 AALKYYL  221 (238)
Q Consensus       215 ~~~~w~~  221 (238)
                      .++.|..
T Consensus       703 ~~~~~~~  709 (1249)
T 3sfz_A          703 NCCHFTN  709 (1249)
T ss_dssp             EEEEECS
T ss_pred             EEEEEec
Confidence            6666654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=87.69  E-value=3.2  Score=35.97  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=50.2

Q ss_pred             ceEEeecccCc-eeeecccc------------eeeeEEEEeCCCCC-eEEEEeeCceEEEEeCCC--CeeeeeeeecCCC
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK------------KTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEG--NFMNKVSMWSGPG  208 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~------------~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g--~~~~~~~~~~~~~  208 (238)
                      ...+.++.+|. ++|..+-.            ...+..+.|+|++. ++..|..+|.|++||...  ..+..+.-+    
T Consensus       245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h----  320 (430)
T 2xyi_A          245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH----  320 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC----
T ss_pred             CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC----
Confidence            34455666776 77764321            12467889999987 677999999999999863  334444433    


Q ss_pred             CCceeEEEEEeecCC
Q psy14042        209 SEMGEIAALKYYLNR  223 (238)
Q Consensus       209 ~~~~~i~~~~w~~~~  223 (238)
                        ..+|.++.|....
T Consensus       321 --~~~v~~i~~sp~~  333 (430)
T 2xyi_A          321 --KDEIFQVQWSPHN  333 (430)
T ss_dssp             --SSCEEEEEECSSC
T ss_pred             --CCCEEEEEECCCC
Confidence              4578899997644

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=87.38  E-value=1.2  Score=41.63  Aligned_cols=54  Identities=6%  Similarity=0.023  Sum_probs=38.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|||++..+-.++.+|+|++||.+| .+..+. +..+ -+...+-++.|...
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~-~~~~sv~svafSPD  140 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGN-LSSRTYHCFEWNPI  140 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSC-STTTCEEEEEECSS
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCc-cccccEEEEEEcCC
Confidence            799999999999999999999999999766 333333 2111 01224667777553

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=87.13  E-value=3.2  Score=36.49  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCC--------cccccHHHHHHHHHhCCCeEEE
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLAR--------ARAVSSQDAKNLAASFKVKFIE   97 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~--------~~~v~~~~~~~~~~~~~~~~~e   97 (238)
                      .+|++++|.|. +  +....+.+..+|..+... ...|.+++.||+|...        ......++.+.+...+.+.--.
T Consensus       149 ~ad~il~vvD~~~--p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNK--PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTS--HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCc--cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            89999999998 5  355556666666554322 5788899999999742        1234456666666666543222


Q ss_pred             EccCCCCCHHHHHH
Q psy14042         98 VSVGIHHNVDELLV  111 (238)
Q Consensus        98 vSA~t~~gv~elf~  111 (238)
                      +--..+...+++..
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            33333445555543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=87.13  E-value=1.6  Score=37.37  Aligned_cols=52  Identities=6%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             eeEEEEeCC-CCCeEEEEeeCceEEEEeCCCC--------eeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042        166 SMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGN--------FMNKVSMWSGPGSEMGEIAALKYYLNR  223 (238)
Q Consensus       166 ~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~--------~~~~~~~~~~~~~~~~~i~~~~w~~~~  223 (238)
                      .+..+.|+| ++..+..|..+|.|++||....        .+..+.-+      ..+|.++.|....
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~  143 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH------TKRVGIVAWHPTA  143 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC------SSCEEEEEECSSB
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC------CCeEEEEEECcCC
Confidence            678899999 9999999999999999998643        23333322      4568888887553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.79  E-value=2.4  Score=35.43  Aligned_cols=32  Identities=13%  Similarity=0.301  Sum_probs=27.0

Q ss_pred             eeEEEEeCC--CCCeEEEEeeCceEEEEeCCCCe
Q psy14042        166 SMLGVQWTS--DSQNLLFAIKGGQVHLYDYEGNF  197 (238)
Q Consensus       166 ~~~~~~~~~--~~~~~~~g~~~g~~~~~d~~g~~  197 (238)
                      .+..+.|+|  ++..+..|..+|.|++||.....
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~  160 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS  160 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc
Confidence            478889999  99999999999999999986433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=86.76  E-value=2.4  Score=36.42  Aligned_cols=56  Identities=16%  Similarity=0.297  Sum_probs=42.7

Q ss_pred             ceEEeecccCc-eeeeccc---------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeC----CCCeeeee
Q psy14042        145 SAVIVGSVDGN-RIWGKEF---------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY----EGNFMNKV  201 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~---------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~----~g~~~~~~  201 (238)
                      ...+.++.+|. ++|...-               . ..+..+.|+|++..+..|..+|.|++||.    .|..+..+
T Consensus        77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  152 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCS-STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL  152 (437)
T ss_dssp             CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECS-SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEecCCceEEEeECcccccCcccceeeeccCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc
Confidence            35667788887 8886422               2 25778999999999999999999999998    45554433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=86.74  E-value=1  Score=37.42  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=37.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCC-Ce--eeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NF--MNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~--~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|..+|.|+|||... ..  +..+.-|      ..+|-++.|..
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH------~~~V~~v~~~~   67 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH------EGPVWQVAWAH   67 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC------SSCEEEEEECC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC------CccEEEEEeCC
Confidence            788899999999999999999999999853 32  2333322      34677777753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=86.00  E-value=3.5  Score=35.64  Aligned_cols=69  Identities=20%  Similarity=0.450  Sum_probs=47.5

Q ss_pred             cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      ....+.++.+|. ++|...-.+         ..+..+.|  ++..+..|..+|.|++||.. |..+..+.-+      ..
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~  214 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH------CE  214 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC------CS
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC------CC
Confidence            345667788887 888643211         14555666  78899999999999999975 6666655533      34


Q ss_pred             eEEEEEee
Q psy14042        213 EIAALKYY  220 (238)
Q Consensus       213 ~i~~~~w~  220 (238)
                      +|.++.|.
T Consensus       215 ~v~~l~~~  222 (435)
T 1p22_A          215 AVLHLRFN  222 (435)
T ss_dssp             CEEEEECC
T ss_pred             cEEEEEEc
Confidence            57777764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.63  E-value=1.4  Score=36.94  Aligned_cols=29  Identities=10%  Similarity=0.225  Sum_probs=26.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE  194 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~  194 (238)
                      .+..+.|+|++..+..|..+|.|++||..
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            57788999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=85.56  E-value=1.3  Score=37.47  Aligned_cols=50  Identities=18%  Similarity=0.251  Sum_probs=36.8

Q ss_pred             eeEEEEeCC-CCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTS-DSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+| ++..+..|..+|.|++||.. |..+..+.-+      ..+|.++.|..
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~------~~~v~~~~~s~  315 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR------GNWCFKTKFAP  315 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS------SSCCCCEEECT
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC------CCceEEEEECC
Confidence            567889999 99999999999999999974 6666655543      23444555544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=85.51  E-value=3  Score=33.99  Aligned_cols=50  Identities=20%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             EEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042        147 VIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN  196 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~  196 (238)
                      .+.++.++. ++|...-.+         ..+..+.|+|++..+..|..+|.|++||....
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            344555665 666543211         14677899999999999999999999998643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=85.30  E-value=5.2  Score=34.64  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             eEEeecccCc-eeeeccc----------c------eeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCC----eeeeeee
Q psy14042        146 AVIVGSVDGN-RIWGKEF----------K------KTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGN----FMNKVSM  203 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~----------~------~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~----~~~~~~~  203 (238)
                      ..+.+..+|. ++|.-.-          .      ...+..+.|+| ++.++..|..+|.|++||....    .+..+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            5667777887 8886542          0      01467789999 6778888999999999998643    3333332


Q ss_pred             ecCCCCCceeEEEEEeecC
Q psy14042        204 WSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       204 ~~~~~~~~~~i~~~~w~~~  222 (238)
                      +      ..+|-+|.|...
T Consensus       276 ~------~~~v~~i~~~p~  288 (430)
T 2xyi_A          276 H------TAEVNCLSFNPY  288 (430)
T ss_dssp             C------SSCEEEEEECSS
T ss_pred             C------CCCeEEEEeCCC
Confidence            2      346777777653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=85.24  E-value=1.9  Score=35.20  Aligned_cols=56  Identities=7%  Similarity=0.022  Sum_probs=35.5

Q ss_pred             eeEEEEeCCC-CCeEEEEeeCceEEEEeCCCCe-eeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSD-SQNLLFAIKGGQVHLYDYEGNF-MNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~-~~~~~~g~~~g~~~~~d~~g~~-~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|+ +.++.-|..+|.|+|||..... ..........+. ..+|.++.|..+
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~d   97 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSD   97 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTT
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCC
Confidence            7888999998 4688889999999999965322 111111111221 345777777543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=84.94  E-value=3.7  Score=38.83  Aligned_cols=73  Identities=22%  Similarity=0.336  Sum_probs=48.5

Q ss_pred             eEEeecccCc-eeeecccc-----------eeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSE  210 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~  210 (238)
                      ..+.++.+|. ++|...-.           ...+..+.|+|+  +..+..|+.+|.|++||.... ......+.    ..
T Consensus        69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~----~~  144 (753)
T 3jro_A           69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID----AH  144 (753)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE----CC
T ss_pred             EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee----cC
Confidence            3445566665 66653221           126778899999  999999999999999998654 23333332    12


Q ss_pred             ceeEEEEEeecC
Q psy14042        211 MGEIAALKYYLN  222 (238)
Q Consensus       211 ~~~i~~~~w~~~  222 (238)
                      ..+|.++.|...
T Consensus       145 ~~~v~~l~~~p~  156 (753)
T 3jro_A          145 AIGVNSASWAPA  156 (753)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CCceEEEEecCc
Confidence            446888888763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=84.94  E-value=2.5  Score=36.17  Aligned_cols=59  Identities=12%  Similarity=0.203  Sum_probs=44.6

Q ss_pred             ceEEeecccCc-eeeeccccee-------------------------eeEEEEeCCCCCeEEEEeeCceEEEEeCC--CC
Q psy14042        145 SAVIVGSVDGN-RIWGKEFKKT-------------------------SMLGVQWTSDSQNLLFAIKGGQVHLYDYE--GN  196 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~--g~  196 (238)
                      ...+.++.+|. ++|.-.-.+.                         .+..+.|+|++..+..|.. |.|++||..  |.
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence            35667788887 8887543221                         5778899999999999998 999999985  66


Q ss_pred             eeeeeeee
Q psy14042        197 FMNKVSMW  204 (238)
Q Consensus       197 ~~~~~~~~  204 (238)
                      .+..+..+
T Consensus       319 ~~~~~~~~  326 (447)
T 3dw8_B          319 PVETYQVH  326 (447)
T ss_dssp             CSCCEESC
T ss_pred             ccceeecc
Confidence            66655543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=84.18  E-value=4.6  Score=35.09  Aligned_cols=69  Identities=12%  Similarity=0.084  Sum_probs=46.6

Q ss_pred             EeecccCc-eeeecc-----cce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeee----eeeeecCCC
Q psy14042        148 IVGSVDGN-RIWGKE-----FKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMN----KVSMWSGPG  208 (238)
Q Consensus       148 ~~~~~~g~-rv~g~~-----~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~----~~~~~~~~~  208 (238)
                      +.++.+|. ++|.-.     ..+        ..+..+.|+|++..+..|..+|.|++||.. |....    .+.-+    
T Consensus       119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h----  194 (450)
T 2vdu_B          119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH----  194 (450)
T ss_dssp             EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC----
T ss_pred             EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc----
Confidence            56667776 777644     111        145678999999999999999999999974 33322    22222    


Q ss_pred             CCceeEEEEEeecC
Q psy14042        209 SEMGEIAALKYYLN  222 (238)
Q Consensus       209 ~~~~~i~~~~w~~~  222 (238)
                        ...|.++.|...
T Consensus       195 --~~~v~~~~~sp~  206 (450)
T 2vdu_B          195 --VSMLTDVHLIKD  206 (450)
T ss_dssp             --SSCEEEEEEEEC
T ss_pred             --cCceEEEEEcCC
Confidence              346777777765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=84.14  E-value=5.7  Score=36.12  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             ceEEeecccCc-eeeecccc--------------------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042        145 SAVIVGSVDGN-RIWGKEFK--------------------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE  194 (238)
Q Consensus       145 ~~~~~~~~~g~-rv~g~~~~--------------------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~  194 (238)
                      .....++.||. ++|.-.-.                    ...+..+.|+++ ..+..|+.+|.|.+||..
T Consensus       226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~  295 (524)
T 2j04_B          226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLT  295 (524)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETT
T ss_pred             ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECC
Confidence            35566788887 88864211                    025778999986 479999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=84.01  E-value=4.3  Score=39.53  Aligned_cols=75  Identities=11%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             EEeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeec------CCCCCc
Q psy14042        147 VIVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWS------GPGSEM  211 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~------~~~~~~  211 (238)
                      .+.++.+|. ++|.-+-.+        ..+..+.|+|++..+..|+.+|.|++||..+..+....++.      ......
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            344556666 777543211        15678899999999999999999999999876543332210      011123


Q ss_pred             eeEEEEEeec
Q psy14042        212 GEIAALKYYL  221 (238)
Q Consensus       212 ~~i~~~~w~~  221 (238)
                      .+|.+|.|..
T Consensus       152 ~~V~sl~~sp  161 (902)
T 2oaj_A          152 SPIVSIQWNP  161 (902)
T ss_dssp             CCCCEEEEET
T ss_pred             CCeEEEEEcc
Confidence            4677777765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=83.26  E-value=7  Score=31.37  Aligned_cols=51  Identities=10%  Similarity=0.236  Sum_probs=39.8

Q ss_pred             eeEEEEeCCCCCeEEEEe--eCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAI--KGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~--~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+....|++++..+.+++  .+|.|++||.. |..+..+.-|      ..+|.+|.|...
T Consensus       242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH------~~~V~~l~~spd  295 (318)
T 4ggc_A          242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH------TSRVLSLTMSPD  295 (318)
T ss_dssp             CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred             eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC------CCCEEEEEEcCC
Confidence            456778999999998876  78999999984 7777666544      457999999754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=83.14  E-value=2.1  Score=38.29  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=37.6

Q ss_pred             eEEEEeCC--CCCeEEEEeeCceEEEEeCC-C--------CeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        167 MLGVQWTS--DSQNLLFAIKGGQVHLYDYE-G--------NFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       167 ~~~~~~~~--~~~~~~~g~~~g~~~~~d~~-g--------~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      +....|+|  ++..+..|..+|.|++||.. |        ..+..+.-+      ..+|.++.|...
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~  127 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPISDISWDFE  127 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEEEEEECTT
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEEEEEEeCC
Confidence            88999999  99999999999999999993 4        333333322      346777777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=82.90  E-value=2.9  Score=36.37  Aligned_cols=53  Identities=9%  Similarity=0.143  Sum_probs=42.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCc---eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGG---QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT  224 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g---~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~  224 (238)
                      .+....|+|+++.++++..++   .|++||.+|.....+.-+      ...|-++.|-.-.+
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~------~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT------DGQVKFPAWSPYLH  410 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS------SSEEEEEEECCCCC
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC------CCCCcCCccccccc
Confidence            356789999999999998887   899999999887766544      45788999976554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=82.62  E-value=3  Score=36.34  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             eeEEEEeCCCCCeE-EEEeeCceEEEEeCC---CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNL-LFAIKGGQVHLYDYE---GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~-~~g~~~g~~~~~d~~---g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+ ..|..+|.|++||..   |..+..+..+..    ...|.++.|..
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~sp  159 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF----SKRPNAISIAE  159 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC----SSCEEEEEECT
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC----CCCceEEEEcC
Confidence            68899999999996 788899999999976   556665553321    23455666654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=82.37  E-value=3.6  Score=37.67  Aligned_cols=52  Identities=10%  Similarity=0.051  Sum_probs=35.8

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+.-|..+|.|+|||. .|....+..+...    ..+|.++.|..
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~fs~  113 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDS  113 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECT
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc----CCceEEEEECC
Confidence            5788899999999999999999999997 3443322222211    23455565553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=80.93  E-value=3.2  Score=40.40  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=37.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|+.+|.|+|||..+...... +   .  ...+|.++.|..
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~---~--~~~~V~~l~fsp   68 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-L---E--DRSAIKEMRFVK   68 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-C---S--SCCCEEEEEEET
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-c---C--CCCCEEEEEEcC
Confidence            788999999999999999999999999876543211 1   1  134677777765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=80.79  E-value=8.4  Score=33.16  Aligned_cols=69  Identities=12%  Similarity=0.280  Sum_probs=46.1

Q ss_pred             cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~  212 (238)
                      ....+.++.+|. ++|...-.+         ..+....|+  +..+..|..+|.|++||.. |..+..+.-+      ..
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h------~~  200 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGH------TS  200 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCC------SS
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCC------CC
Confidence            345567788888 888754221         134556665  5689999999999999975 6555555433      34


Q ss_pred             eEEEEEee
Q psy14042        213 EIAALKYY  220 (238)
Q Consensus       213 ~i~~~~w~  220 (238)
                      +|.++.|.
T Consensus       201 ~v~~~~~~  208 (445)
T 2ovr_B          201 TVRCMHLH  208 (445)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            67777774

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=80.70  E-value=3.2  Score=36.24  Aligned_cols=47  Identities=23%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             EEeecccCc-eeeecccce---e------eeE-EEEeCCCCCeEEEEeeCceEEEEeC
Q psy14042        147 VIVGSVDGN-RIWGKEFKK---T------SML-GVQWTSDSQNLLFAIKGGQVHLYDY  193 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~---~------~~~-~~~~~~~~~~~~~g~~~g~~~~~d~  193 (238)
                      .+.++.||. ++|.-.-.+   +      .+. .+.|+|+++.+.-|..+|.|+|||.
T Consensus       298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            345677887 888654321   0      122 4689999999999999999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=80.62  E-value=8.2  Score=33.11  Aligned_cols=67  Identities=15%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             ecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEe--eCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEE
Q psy14042        150 GSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAI--KGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAAL  217 (238)
Q Consensus       150 ~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~--~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~  217 (238)
                      ++.||. ++|...-..        ..+....|++++..+..++  .+|.|+|||.. |..+..+.-|      ..+|.+|
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH------~~~V~~l  370 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH------TSRVLSL  370 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC------SSCEEEE
T ss_pred             ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC------CCCEEEE
Confidence            456776 777543211        2556778999999999876  68999999984 7767666544      4468888


Q ss_pred             EeecC
Q psy14042        218 KYYLN  222 (238)
Q Consensus       218 ~w~~~  222 (238)
                      .|...
T Consensus       371 ~~spd  375 (420)
T 4gga_A          371 TMSPD  375 (420)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            88653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=80.41  E-value=3.6  Score=40.79  Aligned_cols=51  Identities=10%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||.. |..+..+.-+      ..+|.++.|...
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h------~~~v~~~~~s~~  668 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH------EDEVLCCAFSSD  668 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC------CCCEEEEEEecC
Confidence            78889999999999999999999999984 6666665533      345667776543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=80.03  E-value=3.9  Score=34.55  Aligned_cols=49  Identities=20%  Similarity=0.446  Sum_probs=37.2

Q ss_pred             eEEeecccCc--eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC
Q psy14042        146 AVIVGSVDGN--RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG  195 (238)
Q Consensus       146 ~~~~~~~~g~--rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g  195 (238)
                      ..+.++.||.  ++|...            .. ..+..+.|+|++..+..|..+|.|++||...
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDR-ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCEEEEEECTTCC-SCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC-CcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            3456677773  777543            12 2567789999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-07
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	8e-07
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-06
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	8e-06
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-05
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	8e-05
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-04
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-04
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-04
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-04
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-04
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	0.001
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.002
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.002
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	0.002
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	0.003
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.003
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	0.004

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           +++  ++ + S+  ++    ++         P I+V NK+DL   R VSS + + LA  +
Sbjct: 79  ILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW 138

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQI 117
              F+E S      VDEL   I+ Q+
Sbjct: 139 GCPFMETSAKSKTMVDELFAEIVRQM 164

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 19  EQYEKLTSSD---ETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
           E+Y ++TS+      G ++V+ + K   +   +  ++   +        ++V NK DL  
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 123

Query: 76  ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
            RAV + +A+  A    + FIE S     NV+E    IL +I    S
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 17/92 (18%), Positives = 35/92 (38%)

Query: 31  GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS 90
           G ++V+ + +          +    +        +++ NK DL   R V  ++ +  A  
Sbjct: 78  GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 137

Query: 91  FKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
             + F+E S     NV+E  +    +I  K  
Sbjct: 138 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 169

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 8   HSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYH---RVEQDVIRLHEEGYLR 60
              KV+  +W+    E++  +T +       + +LY  +        Q  +    E    
Sbjct: 52  DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH 111

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
               +++ NK+D A  R V  +D + LA  + + F+E S     NVD     I  +++
Sbjct: 112 DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           L+      +               +G + + P ++V NK D + +R V S +A+ LA ++
Sbjct: 79  LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW 138

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123
           K  F+E S  ++HNV EL   +LN  + +R++
Sbjct: 139 KCAFMETSAKLNHNVKELFQELLNLEK-RRTV 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 19  EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74
           E++  LT++   D  G ++++ +  + S+  V   + +L    Y      +++ NK DL 
Sbjct: 75  ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 134

Query: 75  RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             R V+ + A+ LA  + + + E S     NV++ +  +L+ I  + 
Sbjct: 135 DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 32/88 (36%), Positives = 46/88 (52%)

Query: 34  IVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV 93
           +  +  + S+ +  +  I+L         P I+V NK DL R R VS  + +  A  F  
Sbjct: 84  VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC 143

Query: 94  KFIEVSVGIHHNVDELLVGILNQIRLKR 121
           KFIE S  + HNV EL  GI+ Q+RL+R
Sbjct: 144 KFIETSAAVQHNVKELFEGIVRQVRLRR 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 32/83 (38%), Positives = 45/83 (54%)

Query: 39  YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEV 98
            K S+ +  +  ++L         P I+V NK DL R+R VS  + +  A  F  KFIE 
Sbjct: 83  DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 142

Query: 99  SVGIHHNVDELLVGILNQIRLKR 121
           S  +HHNV  L  G++ QIRL+R
Sbjct: 143 SAALHHNVQALFEGVVRQIRLRR 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 36  WMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKF 95
            M    +     + ++R+ E+  +   P ++V NK DL   R VS ++AKN A  + V +
Sbjct: 87  EMESFAATADFREQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNY 143

Query: 96  IEVSVGIHHNVDELLVGILNQIRLK 120
           +E S     NVD++   ++ +IR +
Sbjct: 144 VETSAKTRANVDKVFFDLMREIRAR 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 19  EQYEKLTSSDETGLIIVWMLYKPSYHR---VEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
           E++  +T S   G     M+Y  +           +             I++ NK DL  
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123

Query: 76  ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
            R V+ ++AK  A    + F+E S     NV++  +    +I
Sbjct: 124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 22/87 (25%), Positives = 42/87 (48%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           L++  +  + S+  + +   ++         P I++ NK DL   R V+ ++ + LA   
Sbjct: 81  LLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQL 140

Query: 92  KVKFIEVSVGIHHNVDELLVGILNQIR 118
           KV ++E S  I  NVD+    ++  IR
Sbjct: 141 KVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 8e-06
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 19  EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
           E++  LT S      G+I+V+ + +        + +   E    R     ++        
Sbjct: 67  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126

Query: 76  ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQT 126
            R V   +    A    + FIE S      V      ++ +I     L ++
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES 177

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 11  KVRAIIW----NEQYEKLTSSDET---GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
           +++  IW     E++  +T++      G+++V+ +         ++ IR  EE       
Sbjct: 54  RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 113

Query: 64  AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
            +I+ NK D+   R VS +  + LA  + +KF+E S   + NV+     +   I+ K
Sbjct: 114 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 1   MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
               +   +G+       EQY +          I          ++   ++R+ +     
Sbjct: 54  ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 111

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
             P ++V NK DL   R V   +A    AS  V + E S  +  NVDE    ++  +R  
Sbjct: 112 -FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

Query: 121 R 121
           +
Sbjct: 171 Q 171

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 32  LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
           LI+  +  K S+  V++    +       + P I+VANK+DL   R V+    K +A  +
Sbjct: 80  LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY 139

Query: 92  KVKFIEVSV-GIHHNVDELLVGILNQIR 118
            + +IE S      NVD+    ++  IR
Sbjct: 140 NIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 33  IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK 92
           ++  +  + S+  V      L E    +    I+V NK DL  +R VS+++ + LA    
Sbjct: 78  LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA 137

Query: 93  VKFIEVSVGI-HHNVDELLVGILNQIRLKR 121
             F E S      N+ E+   +  ++R +R
Sbjct: 138 CAFYECSACTGEGNITEIFYELCREVRRRR 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 10  GKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR 62
            KV+  IW     E++  +T S       LI+ + +      R   + +R  E+      
Sbjct: 52  EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 111

Query: 63  PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
             ++V NKIDLA  R VS Q A+  + +  + ++E S     NV++L + +  ++  + 
Sbjct: 112 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 33  IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAA 89
           ++V+ + KP      +  ++   E   +     +V NKID+ +    R V+ ++ + LA 
Sbjct: 80  LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE 139

Query: 90  SFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
              + F E S     NV+++ +GI  +I LK
Sbjct: 140 EKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 9   SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVA 68
           +G+ R       Y +  +    G ++V+ +     +    + +        +    I+  
Sbjct: 62  AGQERFRSVTRSYYRGAA----GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 117

Query: 69  NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
           NK DL   R V+  +A   A   ++ F+E S     NV+E  V    +I  K
Sbjct: 118 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 3   QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHE 55
           ++++     V+  IW+    E++  +TSS      G+IIV+ +         +  ++  +
Sbjct: 46  KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 105

Query: 56  EGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
                T   ++V NK DL   R V    AK  A + K+ F+E S     NV++  + +  
Sbjct: 106 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165

Query: 116 QIRLKRSLVQTGGAQAAAPWKSNTTL 141
           QI+   S             K N  L
Sbjct: 166 QIKESMSQQNLNETTQKKEDKGNVNL 191

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 33  IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAA 89
           ++V    +       +++ ++     LR    +I ANK D+        +S         
Sbjct: 88  VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK 147

Query: 90  SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119
             +             + + L  +++++++
Sbjct: 148 DHQWHIQACCALTGEGLCQGLEWMMSRLKI 177

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 8   HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67
            +G+       +QY +          I       S+  + Q   ++         P ++V
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNT---KSFEDIHQYREQIKRVKDSDDVPMVLV 114

Query: 68  ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
            NK D   AR V S+ A++LA S+ + +IE S      V++    ++ +IR
Sbjct: 115 GNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 36  WMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAASFK 92
               +      + ++  L ++  L+  P +++ NK DL  A   + +  +   +     +
Sbjct: 79  DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDRE 138

Query: 93  VKFIEVSVGIHHNVDELLVGILNQIR 118
           +    +S     N+D  L  ++   +
Sbjct: 139 ICCYSISCKEKDNIDITLQWLIQHSK 164

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 1   MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
           +   L   +G+ R       Y +        +++  +    S+ +  + +  +  E    
Sbjct: 49  IRLQLWDTAGQERFRSLIPSYIR---DSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGS 104

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
               ++V NK DLA  R VS ++ +  A    V FIE S    +NV +L   +   +
Sbjct: 105 DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 8   HSGKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
           +  KV+  IW     E++  +T++      G+I+V+ +         +   +   E    
Sbjct: 47  NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 106

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
               ++V NK D+   R V++   + LA    + FIE S     NV+E+   +   I+ K
Sbjct: 107 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 14/125 (11%), Positives = 38/125 (30%)

Query: 1   MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
           +   +   +G+ R       + +          +       +      + +         
Sbjct: 51  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 110

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
             P +++ NKIDL   +  + +      +   + + E S     NV++    I      +
Sbjct: 111 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170

Query: 121 RSLVQ 125
            + V+
Sbjct: 171 ETEVE 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 1   MNQSLQGHSGKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRL 53
             +++  +  +++  IW     E+Y  +T++      G I+++ +         QD    
Sbjct: 43  KVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102

Query: 54  HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
            +         ++V NK D+   R VSS+  + LA     +F E S   + NV +    +
Sbjct: 103 IKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

Query: 114 LNQI 117
           ++ I
Sbjct: 163 VDVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 16/117 (13%)

Query: 17  WNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEE---GYLRTRPAIIVANKIDL 73
             E Y++L         +  + +        Q+V          Y    P +++  +IDL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 74  ------------ARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQI 117
                        + + +  +  + LA       ++E S      +  +    +  I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 1   MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
           +   +   +G+ R       + + +        +       +    +++ I   +     
Sbjct: 55  VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 114

Query: 61  TRPAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI 117
           + P +I+ NKID++  R VS+++A+          + E S     NV       + ++
Sbjct: 115 SFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 16/123 (13%)

Query: 11  KVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEE---GYLRTRPAIIV 67
            +      E Y++L         +  + +        ++V          +    P I+V
Sbjct: 56  GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115

Query: 68  ANKIDLARARAVSSQD------------AKNLAASFK-VKFIEVSVGIHHNVDELLVGIL 114
             K+DL   +    +                +A     VK++E S      +  +    +
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 115 NQI 117
             +
Sbjct: 176 RAV 178

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 33  IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR---ARAVSSQDAKNLAA 89
            +V    K       +++  + +E  L+    ++ ANK D      A  VS +       
Sbjct: 90  FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK 149

Query: 90  SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
                 +  S      + E L  +++ I+ ++
Sbjct: 150 DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.89
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.89
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.87
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.84
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.83
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.81
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.81
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.79
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.65
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.63
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.63
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.56
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.4
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.33
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.26
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.24
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.17
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.13
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.06
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.99
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.76
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.75
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.73
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.67
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.6
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.59
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.4
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.33
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.27
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.26
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.15
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.94
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.92
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.67
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.47
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.19
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.14
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.96
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.65
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.37
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.07
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.1
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.89
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.48
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.34
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.09
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	93.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.29
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.04
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	91.44
d1udxa3	76	Obg GTP-binding protein C-terminal domain {Thermus	91.42
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.07
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	91.07
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.04
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	90.59
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	90.36
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	88.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	88.49
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	88.46
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	88.21
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.11
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	87.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	87.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	87.19
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	85.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	81.06
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	80.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	80.51

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.8e-24  Score=167.73  Aligned_cols=120  Identities=30%  Similarity=0.494  Sum_probs=105.2

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.||+.+..|+.++........+|++|||||+||
T Consensus        38 ~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  117 (168)
T d2gjsa1          38 DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL  117 (168)
T ss_dssp             EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC
T ss_pred             cceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccch
Confidence            35788999999999999    889888876   99999999999 99999999999999988766678999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...++++..+++++++.++++|++|||++|.||+++|..|++.+...+
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         118 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR  165 (168)
T ss_dssp             GGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=162.83  Aligned_cols=120  Identities=22%  Similarity=0.339  Sum_probs=110.5

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+.+.+||    ++|..++..   +++++|+|||+ ++.||+.+..|+..+.+.....+.|++|||||+||
T Consensus        44 ~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  123 (173)
T d2fn4a1          44 TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  123 (173)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             eeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeech
Confidence            46788999999999999    788887765   99999999999 99999999999999987765688999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..+++..+++.++++|++|||++|.||+++|+.|++.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         124 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             hhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            998899999999999999999999999999999999999999987654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-23  Score=161.70  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=107.5

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+.+.+++..+.+++||    ++|..+...   ++|++|+|||+ +++||+.+..|+.++.+.....++|++|||||+||
T Consensus        42 ~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  121 (167)
T d1xtqa1          42 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  121 (167)
T ss_dssp             EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTC
T ss_pred             ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccc
Confidence            35788999999999999    777777655   99999999999 99999999999999988765678999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+++++.+++++++++++++|++|||++|.||+++|+.|++.+.
T Consensus       122 ~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.7e-23  Score=161.81  Aligned_cols=118  Identities=23%  Similarity=0.338  Sum_probs=108.3

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+.+.+++..+.+++||    +++..+++.   ++|++++|||+ +++||+++..|+.++.+.....+.|++|||||+||
T Consensus        42 ~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  121 (169)
T d1x1ra1          42 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL  121 (169)
T ss_dssp             EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccch
Confidence            36678899999999999    777777765   99999999999 99999999999999988765678999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHHh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~~  119 (238)
                      ...++++.+++.++++.++++|+||||+++. ||+++|..|++.+.+
T Consensus       122 ~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         122 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999986 999999999998865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.89  E-value=5.5e-23  Score=162.16  Aligned_cols=118  Identities=24%  Similarity=0.363  Sum_probs=106.5

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+.+++||    +++..++..   ++|++|+|||+ ++.||+.+..|+.++.+.....+.|++|||||+||
T Consensus        42 ~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl  121 (168)
T d1u8za_          42 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  121 (168)
T ss_dssp             EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred             ccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccc
Confidence            35678999999999999    667666655   99999999999 99999999999999988766688999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ...++++.++++.+++..+++|++|||++|.||+++|..|++.+..
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999988753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.8e-22  Score=157.06  Aligned_cols=114  Identities=23%  Similarity=0.403  Sum_probs=105.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++..++..+.+++||    ++|..+...   +++++++|||+ ++.||+++..|++++.++.  .+.|++|||||+|+.
T Consensus        42 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~  119 (164)
T d1z2aa1          42 RQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL  119 (164)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG
T ss_pred             eeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcc
Confidence            5677889999999999    777777765   99999999999 9999999999999998876  689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .++++..++++++++.++++|++|||++|.||+++|+.|++.+.
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             cceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-22  Score=158.77  Aligned_cols=120  Identities=30%  Similarity=0.484  Sum_probs=105.2

Q ss_pred             ccEEEECCeEEEEEEEe-------CCCcccccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042          2 NQSLQGHSGKVRAIIWN-------EQYEKLTSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID   72 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD-------e~~~~l~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D   72 (238)
                      .+++.+++..+.+.+||       ++|...... ++|++|+|||+ ++.||+.+..|..++.+.....++|++|||||+|
T Consensus        43 ~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D  122 (172)
T d2g3ya1          43 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD  122 (172)
T ss_dssp             EEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred             eeeeccCCceeeeeeeccccccccccccccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccc
Confidence            36788999999999999       344222222 99999999999 9999999999999998765557899999999999


Q ss_pred             CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      |...++++.++++++++.++++|++|||++|.||+++|..|++++...+
T Consensus       123 l~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             ccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999999986654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.3e-22  Score=156.07  Aligned_cols=119  Identities=22%  Similarity=0.341  Sum_probs=106.9

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+.+++||    ++|..+...   ++|++++|||+ +++||+.+..|+.++.+.......|++|||||+|+
T Consensus        43 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl  122 (171)
T d2erya1          43 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL  122 (171)
T ss_dssp             EEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccch
Confidence            46778899999999999    677776655   99999999999 99999999999999887765678999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ...+.+..++++++++.++++|++|||++|.||+++|..|++.+.+.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         123 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             TTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.4e-22  Score=154.76  Aligned_cols=117  Identities=27%  Similarity=0.382  Sum_probs=100.2

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+.+..++..+.+++||    ++++.++..   ++|++|+|||+ +++||+.+..|+..+.... ....|++|||||+|+
T Consensus        42 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl  120 (167)
T d1z08a1          42 TKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDL  120 (167)
T ss_dssp             EEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGG
T ss_pred             eeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc-ccccceeeecccccc
Confidence            35677889999999999    678877766   99999999999 9999999999998876654 267899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..++.++.+++++++++++++|+||||++|.||+++|..|++.+.+
T Consensus       121 ~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             ccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.1e-22  Score=155.96  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=102.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      +.+..++..++++|||    ++|......  +++++++|||+ +++||..+..|...+.......+.|++|||||+||..
T Consensus        41 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  120 (168)
T d2atva1          41 HQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH  120 (168)
T ss_dssp             EEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred             ccccccccceEEEEeecccccccccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhh
Confidence            4567789999999999    444322222  89999999999 9999999999887776665557899999999999999


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIRLKR  121 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~~~~  121 (238)
                      ++.++.+++++++++++++|+||||++|. ||+++|..|++.+.+++
T Consensus       121 ~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999998 59999999999887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-22  Score=157.84  Aligned_cols=115  Identities=25%  Similarity=0.351  Sum_probs=102.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.+...   ++|++|+|||+ +++||+.+..|...+.+.... .++|++|||||+|+
T Consensus        41 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  120 (171)
T d2erxa1          41 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE  120 (171)
T ss_dssp             EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred             cceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccc
Confidence            4567899999999999    777777665   99999999999 999999999999998776533 78999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ...++++.++++++++.++++|++|||++|.||+++|+.|++.+
T Consensus       121 ~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             cccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.5e-22  Score=154.34  Aligned_cols=116  Identities=27%  Similarity=0.420  Sum_probs=105.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    +.+..+...   +++++++|||+ ++.+|.++..|..++.......++|++|||||+||.
T Consensus        42 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  121 (167)
T d1kaoa_          42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE  121 (167)
T ss_dssp             EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             eeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh
Confidence            4677899999999999    666666655   89999999999 999999999999999877656789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++..+++.++++|++|||++|.||+++|..|++++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            98899999999999999999999999999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-21  Score=153.52  Aligned_cols=119  Identities=23%  Similarity=0.398  Sum_probs=107.9

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++.+++..+++++||    |+|+.+++.   +++++++|||+ ++.+|+.+..|...+.+.. ....|++|||||+|+
T Consensus        44 ~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          44 IKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDL  122 (171)
T ss_dssp             EEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGG
T ss_pred             EEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccc-cccccEEEEEeeccc
Confidence            46788999999999999    788888776   99999999999 9999999999999987654 367899999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...+.+..++++.+++..+++|++|||++|.||+++|..|++.+..+.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA  170 (171)
T ss_dssp             GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence            988899999999999999999999999999999999999998886653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.4e-21  Score=152.13  Aligned_cols=116  Identities=22%  Similarity=0.376  Sum_probs=104.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++|+|||+ ++.||+++..|+..+.+....+++|++|||||+|+.
T Consensus        42 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~  121 (167)
T d1c1ya_          42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             eeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc
Confidence            5677889999999999    777777765   89999999999 999999999999999877656789999999999999


Q ss_pred             CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++..++++. +++|++|||++|.||+++|..|++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             cccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            99999999999999884 789999999999999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3e-21  Score=150.84  Aligned_cols=115  Identities=23%  Similarity=0.372  Sum_probs=104.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+++.+||    ++|+.++..   +++++++|||+ ++.||+.+..|+.++.++.. .+.|++|||||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~  118 (164)
T d1yzqa1          40 KTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLA  118 (164)
T ss_dssp             EEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCG
T ss_pred             eeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchh
Confidence            4556678899999999    778777765   99999999999 99999999999999887653 689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.+..+++.+++++++++|+||||++|.||+++|..|++.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            88899999999999999999999999999999999999998763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.3e-21  Score=149.53  Aligned_cols=114  Identities=22%  Similarity=0.401  Sum_probs=104.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++++||    ++|+.++..   ++|++|+|||+ +++||+.+..|+..+.+.. ....|+++||||+|+.
T Consensus        44 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~  122 (166)
T d1z0fa1          44 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLE  122 (166)
T ss_dssp             EEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhc-cccceEEEEcccccch
Confidence            5678899999999999    788887766   99999999999 9999999999999987654 3788999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..++++.++++.+++|++|||++|.||+++|..|++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         123 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-20  Score=148.09  Aligned_cols=118  Identities=19%  Similarity=0.357  Sum_probs=106.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ....++..+.+.+||    +.|+.++..   ++|++|+|||+ ++.||+.+..|+..+.+.. ..++|++|||||+|+..
T Consensus        44 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~  122 (173)
T d2a5ja1          44 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLES  122 (173)
T ss_dssp             EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGG
T ss_pred             eeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhh
Confidence            456678899999999    777887776   99999999999 9999999999999988764 37899999999999999


Q ss_pred             cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      .+.+..+++..+++..+++|++|||++|.||+++|..|++.+.++.+
T Consensus       123 ~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         123 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  169 (173)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999876543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.3e-20  Score=147.86  Aligned_cols=114  Identities=27%  Similarity=0.432  Sum_probs=103.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .++..++..+.++|||    ++++.++..   +++++|+|||+ ++++|+.++.|...+.+.. ..+.|++|||||+|+.
T Consensus        44 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~  122 (167)
T d1z0ja1          44 KTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLT  122 (167)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCG
T ss_pred             ccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhc
Confidence            4566778899999999    778887766   99999999999 9999999999999887765 3789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..+.+..++++++++..+++|+||||++|.||+++|..|++++
T Consensus       123 ~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            9899999999999999999999999999999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-20  Score=149.94  Aligned_cols=114  Identities=17%  Similarity=0.278  Sum_probs=98.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHH-HHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQ-DVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~-~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+..++..+++++||    ++|+.++..   ++|++++|||+ +++||+++.. |...++...  .++|++|||||+||
T Consensus        48 ~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl  125 (185)
T d2atxa1          48 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDL  125 (185)
T ss_dssp             EEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTS
T ss_pred             EEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC--CCCCeeEeeecccc
Confidence            5677889999999999    888888766   99999999999 9999998765 555555544  78999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 AR------------ARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..            .+.++.+++.+++++++ ++|+||||++|.||+++|+.+++.+.
T Consensus       126 ~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            64            46788899999999887 78999999999999999999998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-20  Score=147.22  Aligned_cols=114  Identities=18%  Similarity=0.342  Sum_probs=98.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHH-HHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQD-VIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~-~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    +.|+.++..   ++|++|+|||+ +++||+++..| ...+.++.  .+.|++|||||+|+
T Consensus        41 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl  118 (177)
T d1kmqa_          41 ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL  118 (177)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECGGG
T ss_pred             ccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC--CCCceEEeeecccc
Confidence            4577889999999999    888888866   99999999999 99999998764 45555544  68999999999999


Q ss_pred             CCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...            +.++.+++..++++.+ .+|+||||++|.||+++|+.+++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             TTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            643            4578889999999988 58999999999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.5e-20  Score=147.82  Aligned_cols=116  Identities=22%  Similarity=0.424  Sum_probs=105.1

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+++++||    ++|+.++..   ++|++|+|||+ ++++|..+..|...+.... ....|+++||||+|+.
T Consensus        45 ~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~  123 (169)
T d3raba_          45 KTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDME  123 (169)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCG
T ss_pred             EEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeecccc
Confidence            4677788999999999    788877766   99999999999 9999999999998876654 4788999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..+.++.++++.+++..+++|++|||++|.||+++|+.|++.+.+
T Consensus       124 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             cccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=147.93  Aligned_cols=115  Identities=27%  Similarity=0.396  Sum_probs=103.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..+..++..+.+.+||    ++|+.++..   +++++|+|||+ ++++|+.+..|...+.+.. ..+.|++|||||+|+.
T Consensus        46 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~  124 (170)
T d1r2qa_          46 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLA  124 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             ceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhcc-CCCceEEeeccccccc
Confidence            3566788999999999    778887765   99999999999 9999999999999987654 3789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      .++.++.++++++++.++++|+||||++|.||+++|..|++.+.
T Consensus       125 ~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999997653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.6e-21  Score=151.23  Aligned_cols=115  Identities=13%  Similarity=0.270  Sum_probs=100.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+..++..+++.+||    ++|+.++..   +++++++|||+ +++||+.+..|+.++.+..  .++|++|||||+||.
T Consensus        43 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~  120 (170)
T d1i2ma_          43 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK  120 (170)
T ss_dssp             EEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCS
T ss_pred             cccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhh
Confidence            5667788999999999    677777765   99999999999 9999999999999998776  789999999999998


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+...  +...+++..+++|++|||++|.||+++|..|++.+...+
T Consensus       121 ~~~~~~--~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         121 DRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             CSCCTT--TSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHTCT
T ss_pred             hhhhhh--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHccCC
Confidence            665433  455778889999999999999999999999999987544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-20  Score=145.15  Aligned_cols=119  Identities=30%  Similarity=0.455  Sum_probs=107.8

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.+.+||    |+|+.++..   +++++|+|||+ +++||..+..|+.++.++.. .++|++|||||+|+.
T Consensus        44 ~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~  122 (175)
T d2f9la1          44 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR  122 (175)
T ss_dssp             EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCG
T ss_pred             EEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeeccc
Confidence            5678899999999999    788888776   99999999999 99999999999999988763 679999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +.+....+....+.+..+.+|++|||++|.|++++|..+++.+.+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         123 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            888888888889999999999999999999999999999999876543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=147.26  Aligned_cols=116  Identities=23%  Similarity=0.385  Sum_probs=102.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..+..++..+.+.+||    +.|..++..   +++++++|||+ ++.+|+.+..|+..+.+.....+.|+++||||+|+.
T Consensus        42 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (166)
T d1ctqa_          42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA  121 (166)
T ss_dssp             EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS
T ss_pred             cceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc
Confidence            3566788999999999    666665554   99999999999 999999999999999887766789999999999996


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      . +.+..++++.+++..+++|++|||++|.||+++|..|++.+.+
T Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             C-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             c-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            4 5677889999999999999999999999999999999998864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=8.3e-20  Score=144.09  Aligned_cols=118  Identities=21%  Similarity=0.456  Sum_probs=97.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+.+++||    ++|..++..   ++|++|+|||+ ++.||+.+..|...+.... ..+.|+++|+||+|+.
T Consensus        46 ~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~  124 (173)
T d2fu5c1          46 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVN  124 (173)
T ss_dssp             EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CC
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhc-cCCceEEEEEecccch
Confidence            5788999999999999    888888876   99999999999 9999999999999987544 4789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ..+....+++..+++..+++|++|||++|+||+++|.+|++.+.++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            88888888999999999999999999999999999999999987654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-21  Score=151.61  Aligned_cols=113  Identities=25%  Similarity=0.482  Sum_probs=102.9

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS   81 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~   81 (238)
                      ..+++.+||    ++|+.++..   ++|++|+|||+ ++.+|+.+..|+.++..+......|++|||||+||...++++.
T Consensus        62 ~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~  141 (186)
T d2f7sa1          62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE  141 (186)
T ss_dssp             EEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH
T ss_pred             ceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH
Confidence            458899999    888888876   99999999999 9999999999999887665557889999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042         82 QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~  122 (238)
                      +++.++++.++++|++|||++|.||+++|+.|++.+.++.+
T Consensus       142 ~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         142 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             HHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.6e-20  Score=145.45  Aligned_cols=112  Identities=17%  Similarity=0.359  Sum_probs=98.0

Q ss_pred             cEEEECCeEEEEEEEe----CCC-cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQY-EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~-~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++.+++..+.+.+||    +.+ ...+..   ++|++|+|||+ +++||+.+..|+.++.++....++|++|||||+||
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl  121 (165)
T d1z06a1          42 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL  121 (165)
T ss_dssp             EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             eeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccc
Confidence            5677889999999999    222 223332   99999999999 99999999999999988776688999999999999


Q ss_pred             CCcccccHHHHHHHHHhCCCeEEEEccCC---CCCHHHHHHHHH
Q psy14042         74 ARARAVSSQDAKNLAASFKVKFIEVSVGI---HHNVDELLVGIL  114 (238)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t---~~gv~elf~~i~  114 (238)
                      ..+++++.++++++++.++++|++|||++   +.||+++|+.|+
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             hhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            99999999999999999999999999997   469999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-19  Score=142.92  Aligned_cols=115  Identities=24%  Similarity=0.466  Sum_probs=98.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ..+..++..++++|||    ++|+.++..   ++|++++|||+ +++||..+..|...+.... ....|++||+||+|+.
T Consensus        47 ~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~  125 (170)
T d2g6ba1          47 KVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSA  125 (170)
T ss_dssp             EEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTT
T ss_pred             EEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechh
Confidence            4577899999999999    888888776   99999999999 9999999999998887655 3678999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ..+.++.+++..+++..+++|++|||++|.||+++|..|++.+.
T Consensus       126 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         126 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2e-19  Score=144.52  Aligned_cols=120  Identities=28%  Similarity=0.390  Sum_probs=109.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+.+.|||    |+|+.++..   +++++|+|||+ ++++|..+..|...+.+.. ..+.|++|||||+|+.
T Consensus        46 ~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~  124 (194)
T d2bcgy1          46 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLK  124 (194)
T ss_dssp             EEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred             EEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccc
Confidence            5678899999999999    899988877   99999999999 9999999999999887654 3789999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                      ....+..++...+++..+++|+++||++|.||+++|+.|++.+.+....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         125 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999998876543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=143.09  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=106.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .++..++..+.+++||    ++|..++..   +++++|+|||. ++++|..+..|+..+.... ..+.|+++||||+|+.
T Consensus        45 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~  123 (174)
T d2bmea1          45 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLD  123 (174)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred             EEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEeccccc
Confidence            4566788999999999    788877766   99999999999 9999999999999988765 3689999999999999


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      ...++..+++..+++..+++|++|||++|.||+++|..|++.+....
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~  170 (174)
T d2bmea1         124 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI  170 (174)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             chhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-19  Score=144.45  Aligned_cols=116  Identities=16%  Similarity=0.297  Sum_probs=98.9

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHH-HHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQD-VIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~-~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.+++||    ++|+.++..   ++|++++|||+ +++||+++..| ...+....  .+.|+++||||+||
T Consensus        42 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~i~lvgnK~Dl  119 (191)
T d2ngra_          42 VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL  119 (191)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECGGG
T ss_pred             eeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcC--CCCceEEEeccccc
Confidence            4567889999999999    888888876   99999999999 99999999764 44455443  78999999999999


Q ss_pred             CC------------cccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         74 AR------------ARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ..            .+.++.+++++++++. +++|+||||++|.||+++|+.+++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             cccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            63            3458889999999986 57999999999999999999999877554

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.8e-20  Score=144.38  Aligned_cols=115  Identities=25%  Similarity=0.427  Sum_probs=102.3

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      .+++..++..+.++|||    +++..++..   ++|++|+|||+ ++.||+++..|..++.... ....|+++|+||+|+
T Consensus        42 ~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~  120 (170)
T d1ek0a_          42 TQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDM  120 (170)
T ss_dssp             EEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGG
T ss_pred             ccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc-ccccceeeeeccccc
Confidence            36788899999999999    777777665   99999999999 9999999999998877654 367899999999998


Q ss_pred             CC---cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         74 AR---ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        74 ~~---~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..   .+.+..+++.++++..+++|++|||++|.||+++|..|+++|
T Consensus       121 ~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             ccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            53   478899999999999999999999999999999999998655

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=144.18  Aligned_cols=114  Identities=18%  Similarity=0.317  Sum_probs=96.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHH-HHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQ-DVIRLHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~-~~~~l~~~~~~~~~piilVgNK~DL   73 (238)
                      +++..++..+++++||    +.|..++..   ++|++++|||+ +++||+++.. |...+..+.  .+.|++|||||+|+
T Consensus        44 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~--~~~piilvgnK~Dl  121 (183)
T d1mh1a_          44 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  121 (183)
T ss_dssp             EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHH
T ss_pred             eeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC--CCCcEEEEeecccc
Confidence            5678899999999999    777777665   99999999999 9999999976 555565554  68999999999998


Q ss_pred             CCcc------------cccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         74 ARAR------------AVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        74 ~~~~------------~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ...+            .+...++..+++..+ ++|+||||++|.||+++|..|++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            6543            345668888898877 79999999999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=4.4e-19  Score=139.65  Aligned_cols=114  Identities=20%  Similarity=0.280  Sum_probs=92.3

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEeccCCCc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKIDLARA   76 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~   76 (238)
                      +...+.+.+||    +++..++..   +++++++|||+ ++.||+.+..|+.++..+..   ..++|++|||||+|+...
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             CcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            34568899999    666666655   99999999999 99999999999999877643   257899999999999865


Q ss_pred             c-cccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         77 R-AVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        77 ~-~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      + .++.++++++++.++ ++|++|||++|.||+++|++|++.+.+++
T Consensus       128 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         128 KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            4 478889999999986 78999999999999999999999887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=141.23  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=100.2

Q ss_pred             ccEEEECCeEEEEEEEe----CCCcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCC
Q psy14042          2 NQSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLA   74 (238)
Q Consensus         2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~   74 (238)
                      .+++.++++.+.++|||    ++++  ...++|++|+|||+ +++||+.+..|+.++.....  ...+|++|||||.|+.
T Consensus        42 ~~~i~v~~~~~~l~i~Dt~g~~~~~--~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          42 KKEMLVDGQTHLVLIREEAGAPDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             EEEEEETTEEEEEEEEECSSCCCHH--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             EEEeecCceEEEEEEeecccccccc--cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence            35788999999999999    3222  12289999999999 99999999999999876643  3678999999998885


Q ss_pred             --CcccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042         75 --RARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL  123 (238)
Q Consensus        75 --~~~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~  123 (238)
                        ..+.++.++++.++.+ .+++|+||||++|.||+++|..+++.+...+.+
T Consensus       120 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         120 ASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             SSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhh
Confidence              4567888899888655 578999999999999999999999999877654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.9e-19  Score=142.03  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHH-HHHhcCCCCCCEEEEEEeccC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIR-LHEEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~-l~~~~~~~~~piilVgNK~DL   73 (238)
                      +.+.+++..+.++|||    ++|+.++..   ++|++|+|||+ +++||+.+..|... +....  .+.|++|||||+|+
T Consensus        41 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl  118 (179)
T d1m7ba_          41 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL  118 (179)
T ss_dssp             EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred             ccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC--CcceEEEEEecccc
Confidence            5667889999999999    777777665   99999999999 99999999765544 54444  68999999999998


Q ss_pred             CC------------cccccHHHHHHHHHhCC-CeEEEEccCCCCC-HHHHHHHHHHHHHh
Q psy14042         74 AR------------ARAVSSQDAKNLAASFK-VKFIEVSVGIHHN-VDELLVGILNQIRL  119 (238)
Q Consensus        74 ~~------------~~~v~~~~~~~~~~~~~-~~~~evSA~t~~g-v~elf~~i~~~l~~  119 (238)
                      ..            .+.++.+++..++++.+ .+|+||||++|++ |+++|+.+++.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         119 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            53            45688999999999876 5899999999984 99999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-18  Score=137.37  Aligned_cols=116  Identities=18%  Similarity=0.278  Sum_probs=98.7

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~   71 (238)
                      +.+..++..+.+++||    ++++.+...   .+++++++||+ ++.||+.+..|++++.++..   ..+.|++|||||+
T Consensus        46 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~  125 (174)
T d1wmsa_          46 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI  125 (174)
T ss_dssp             EEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred             eeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEecccc
Confidence            5667889999999999    344444433   99999999999 99999999999999877642   2578999999999


Q ss_pred             cCCCcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         72 DLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ||.+ +.+..+++++++++. .++|+||||++|.||+++|+.|++.+..
T Consensus       126 Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         126 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             TCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             chhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            9964 678889999999886 5899999999999999999999988753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-18  Score=137.24  Aligned_cols=118  Identities=21%  Similarity=0.357  Sum_probs=106.6

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +.+.+++..+++.|||    ++++.++..   ++|++|+|||+ ++.+|+.+..|+.++.+.......|+++++||.|+.
T Consensus        47 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~  126 (177)
T d1x3sa1          47 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE  126 (177)
T ss_dssp             EEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred             EEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc
Confidence            5678899999999999    888888765   99999999999 999999999999999877656789999999999975


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR  121 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~  121 (238)
                      . +.+..+++..+++.++++|++|||++|+||+++|+.|++++.+.+
T Consensus       127 ~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         127 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             S-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             c-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccCc
Confidence            4 677888999999999999999999999999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=4.1e-18  Score=135.35  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=99.0

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEEec
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVANKI   71 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgNK~   71 (238)
                      +.+..++..+.+.+||    +.++.++..   +++++++|||. ++.+|+.+..|++++......   .+.|++|||||+
T Consensus        42 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~  121 (184)
T d1vg8a_          42 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI  121 (184)
T ss_dssp             EEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred             eeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEee
Confidence            4567788899999999    455555554   99999999999 999999999999998776432   468999999999


Q ss_pred             cCCCcccccHHHHHHHH-HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042         72 DLARARAVSSQDAKNLA-ASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV  124 (238)
Q Consensus        72 DL~~~~~v~~~~~~~~~-~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~  124 (238)
                      ||.+. .+..++...++ +..+++|++|||++|.||+++|++|++.+.+++...
T Consensus       122 Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         122 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             TSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccccc
Confidence            99764 45555666665 456899999999999999999999999988766543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.6e-17  Score=129.65  Aligned_cols=116  Identities=24%  Similarity=0.454  Sum_probs=102.4

Q ss_pred             cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+++..+++.+||    ++|+.++..   +++++|+|||. +++||+++..|...+.... ....|+++++||.|+.
T Consensus        42 ~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~  120 (166)
T d1g16a_          42 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME  120 (166)
T ss_dssp             EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhh
Confidence            5778899999999999    888888866   99999999999 9999999999988877654 3678899999999986


Q ss_pred             CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      . +....++++++++.++++|++|||++|+||+++|..|++.+.++
T Consensus       121 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         121 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             T-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             h-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            4 45667789999999999999999999999999999999888653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.71  E-value=6.6e-18  Score=133.82  Aligned_cols=111  Identities=16%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---   78 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---   78 (238)
                      ..+++.+||    ++|+.++..   +++++++|||+ ++.+|.....|+.++.+.....+.|++||+||+|+.....   
T Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~  138 (182)
T d1moza_          59 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASE  138 (182)
T ss_dssp             TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHH
T ss_pred             CCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHH
Confidence            458899999    888888876   99999999999 9999999999888876655457899999999999975322   


Q ss_pred             ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         79 VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        79 v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      +........++..+++|++|||++|+||+++|++|++.+.++
T Consensus       139 i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         139 VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            111111122344567899999999999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.65  E-value=1e-16  Score=125.75  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH-
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS-   81 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~-   81 (238)
                      .+.+++||    ++|+.++..   ++|++|+|||+ ++.+|..+..|..++.......+.|++||+||+||........ 
T Consensus        59 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~  138 (176)
T d1fzqa_          59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEI  138 (176)
T ss_dssp             TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred             CeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHH
Confidence            47899999    677776665   99999999999 9999999999888877655457899999999999975433211 


Q ss_pred             HH--HHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         82 QD--AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        82 ~~--~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      .+  ....++...+++++|||++|+||+++|++|+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         139 AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            11  112233446789999999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.63  E-value=4.7e-16  Score=120.79  Aligned_cols=112  Identities=18%  Similarity=0.154  Sum_probs=85.3

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV   79 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v   79 (238)
                      +...+.+.+||    ++|+.++..   +++++++|||+ |..+|.....++.++.......+.|++||+||+|+.+...+
T Consensus        42 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  121 (165)
T d1ksha_          42 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC  121 (165)
T ss_dssp             EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH
T ss_pred             cccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH
Confidence            33448899999    556666655   99999999999 99999999887777655444478999999999999765544


Q ss_pred             cHHHHHHH---HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNL---AASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~---~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ........   ++..++++++|||++|+||+++|++|++++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         122 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            33222111   12235689999999999999999999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.63  E-value=1.1e-16  Score=125.72  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--   78 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--   78 (238)
                      ...+.+.+||    +.++..+..   +++++|+|||+ +.++|..+..|+..+.+.....+.|++||+||+||+....  
T Consensus        53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~  132 (173)
T d1e0sa_          53 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH  132 (173)
T ss_dssp             ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred             ccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHH
Confidence            3458899999    666666655   99999999999 9999999999888876654457899999999999975322  


Q ss_pred             -ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         79 -VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        79 -v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                       +....+...++..++.+++|||++|+||+|+|++|.+++
T Consensus       133 ~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         133 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence             222222223344577899999999999999999998653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.62  E-value=7.3e-17  Score=125.67  Aligned_cols=107  Identities=14%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---
Q psy14042         10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---   78 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---   78 (238)
                      ..+.+.+||    +.|+..+..   +++++++|||+ ++++|.....|+..+.+....++.|++|||||+|+.....   
T Consensus        45 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~  124 (164)
T d1zd9a1          45 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE  124 (164)
T ss_dssp             TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH
T ss_pred             eeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHH
Confidence            358899999    566666654   99999999999 9999999999999887665457899999999999975322   


Q ss_pred             ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         79 VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        79 v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      +........++..+++++++||++|.||+++|++|++.
T Consensus       125 i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         125 LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            22222222334456789999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.56  E-value=1e-15  Score=117.25  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=89.5

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      ....+...+.+.+||    +.++.....   ++++++++||+ ++.++..+..|..++.........|+++++||+|+..
T Consensus        36 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~  115 (160)
T d1r8sa_          36 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN  115 (160)
T ss_dssp             EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccc
Confidence            445667789999999    444443333   99999999999 9999999999999987766557899999999999875


Q ss_pred             cc---cccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         76 AR---AVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        76 ~~---~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      ..   ++.......+++..++++++|||++|+||+++|++|++++
T Consensus       116 ~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            32   2333333445556688999999999999999999998753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.40  E-value=5.4e-13  Score=103.79  Aligned_cols=105  Identities=13%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ   82 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~   82 (238)
                      .+.+.+||    +.++..+..   .++++++++|. +..++.....+.............|++||+||+|+......  +
T Consensus        58 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~  135 (177)
T d1zj6a1          58 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--A  135 (177)
T ss_dssp             TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--H
T ss_pred             ceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH--H
Confidence            37788888    445554444   89999999999 99999988877776665554478999999999999754332  2


Q ss_pred             HHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         83 DAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        83 ~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      +....     +...++++++|||++|+||+++|++|++++
T Consensus       136 ~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         136 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            22222     233467899999999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.33  E-value=1.7e-12  Score=99.38  Aligned_cols=109  Identities=15%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---c
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---V   79 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v   79 (238)
                      .+.+.+||    +.++.....   ..+++++++|+ +..++.....+.............|+++|+||.|+.....   +
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i  127 (169)
T d1upta_          48 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEM  127 (169)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH
T ss_pred             ceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHH
Confidence            35666777    455554444   89999999999 8888888877766655544447899999999999975432   2


Q ss_pred             cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ....+..++...+++|++|||++|+||+++|+.|++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         128 ANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            2223333455567899999999999999999999988754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=4.9e-13  Score=105.24  Aligned_cols=115  Identities=11%  Similarity=0.006  Sum_probs=79.1

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHH-----------HHHHHHHHHHHhcCCCCCCE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYH-----------RVEQDVIRLHEEGYLRTRPA   64 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~-----------~~~~~~~~l~~~~~~~~~pi   64 (238)
                      +..++...++++|||    ++|+.++..   +++++++|||+ +.++|.           ....|...+. .......|+
T Consensus        34 ~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~-~~~~~~~~~  112 (195)
T d1svsa1          34 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN-NKWFTDTSI  112 (195)
T ss_dssp             EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-CGGGTTSEE
T ss_pred             EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhc-ccccCCCCE
Confidence            344555668999999    899999987   99999999999 777662           2233433333 333478899


Q ss_pred             EEEEEeccCCCcc---------------cccHHHH-----HHHHHh------CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042         65 IIVANKIDLARAR---------------AVSSQDA-----KNLAAS------FKVKFIEVSVGIHHNVDELLVGILNQIR  118 (238)
Q Consensus        65 ilVgNK~DL~~~~---------------~v~~~~~-----~~~~~~------~~~~~~evSA~t~~gv~elf~~i~~~l~  118 (238)
                      ++++||+|+...+               .....+.     ..+.+.      ..+.+++|||+++.||+++|..+.+.+.
T Consensus       113 ~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            9999999973211               1111111     112211      2456889999999999999999988775


Q ss_pred             h
Q psy14042        119 L  119 (238)
Q Consensus       119 ~  119 (238)
                      .
T Consensus       193 ~  193 (195)
T d1svsa1         193 K  193 (195)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=2.2e-11  Score=95.23  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .++.+++++|.....+.....+...+...... .++|+++|+||+|+...+.+  ++..+.....+.+++++||++|+|+
T Consensus        79 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gi  156 (180)
T d1udxa2          79 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGL  156 (180)
T ss_dssp             SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             hhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCH
Confidence            88999999998544555555555554433211 46899999999999765433  2344555667899999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14042        107 DELLVGILNQIRLKR  121 (238)
Q Consensus       107 ~elf~~i~~~l~~~~  121 (238)
                      +++++.|.+.+...+
T Consensus       157 d~L~~~i~~~l~~~~  171 (180)
T d1udxa2         157 PALKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhhcC
Confidence            999999998886544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=2.1e-11  Score=92.38  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042          9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS   80 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~   80 (238)
                      ...+...+||    ..+..+...   .++++++++|. +..++.....|...+.......+.|+++++||.|+....  .
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~  118 (166)
T d2qtvb1          41 IGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--S  118 (166)
T ss_dssp             CTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--C
T ss_pred             cCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--C
Confidence            3346678888    344444443   89999999999 999999998888888776666889999999999996532  2


Q ss_pred             HHHHHHH------------HHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042         81 SQDAKNL------------AASFKVKFIEVSVGIHHNVDELLVGILN  115 (238)
Q Consensus        81 ~~~~~~~------------~~~~~~~~~evSA~t~~gv~elf~~i~~  115 (238)
                      ..+....            ....++++++|||++|+||+|+|++|.+
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         119 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            2222221            1233467999999999999999999873

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.8e-11  Score=96.47  Aligned_cols=114  Identities=11%  Similarity=-0.006  Sum_probs=81.3

Q ss_pred             EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc-----------hHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042          6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP-----------SYHRVEQDVIRLHEEGYLRTRPAII   66 (238)
Q Consensus         6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~-----------s~~~~~~~~~~l~~~~~~~~~piil   66 (238)
                      .+....+.+++||    ++++.++..   ++++++++||. +..           .++....|...+.... ..+.|+++
T Consensus        39 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~  117 (200)
T d2bcjq2          39 PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-FQNSSVIL  117 (200)
T ss_dssp             EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-GSSSEEEE
T ss_pred             EEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh-ccCccEEE
Confidence            3445568899999    888888877   99999999999 643           4556666777665433 47899999


Q ss_pred             EEEeccCCCcccc----------------cHHHHHHHH-----H-----hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         67 VANKIDLARARAV----------------SSQDAKNLA-----A-----SFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        67 VgNK~DL~~~~~v----------------~~~~~~~~~-----~-----~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ++||+|+...+..                .......+.     .     ...+.+++|||++|.||+++|..|.+.+.+.
T Consensus       118 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             EEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            9999998432211                122222211     1     1235578999999999999999998888653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=2.3e-11  Score=95.03  Aligned_cols=85  Identities=21%  Similarity=0.161  Sum_probs=61.9

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCC
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHN  105 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~g  105 (238)
                      ++|++|+|+|. +..... ...|...+++..  .+.|+++|+||+|+....   .+..+.+.+..+ ..++++||++|.|
T Consensus        84 ~ad~il~v~D~~~~~~~~-~~~i~~~l~~~~--~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPE-DELVARALKPLV--GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SCSEEEEEEETTSCCCHH-HHHHHHHHGGGT--TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             cccceeeeechhhhhccc-ccchhhheeccc--cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCC
Confidence            79999999999 543333 244555554443  678999999999996543   223344455555 5789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14042        106 VDELLVGILNQIR  118 (238)
Q Consensus       106 v~elf~~i~~~l~  118 (238)
                      ++++++.|++.++
T Consensus       158 i~~L~~~i~~~lp  170 (178)
T d1wf3a1         158 VAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999997654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.7e-11  Score=91.86  Aligned_cols=80  Identities=14%  Similarity=0.025  Sum_probs=64.3

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++++++|. +..+++..+.|...+....  .+.|++||+||+||..+....       .+..+.+++++||++|.|+
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCH
Confidence            89999999999 7878887777776666544  679999999999986543211       1234678999999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        107 DELLVGILNQ  116 (238)
Q Consensus       107 ~elf~~i~~~  116 (238)
                      +++++.|++.
T Consensus       151 ~~L~~~l~~~  160 (161)
T d2gj8a1         151 DVLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999865

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.06  E-value=9.5e-10  Score=84.85  Aligned_cols=109  Identities=14%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR   75 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~   75 (238)
                      .+..++  ..+..||    ..+......   ..+++++++|+ +...+.....+...........+.|++|++||.|++.
T Consensus        51 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          51 ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             EEEecc--cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc
Confidence            344555  4566777    445544444   89999999999 9999998887766665544447899999999999865


Q ss_pred             cccccHHHHHHHHH-----------------hCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         76 ARAVSSQDAKNLAA-----------------SFKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        76 ~~~v~~~~~~~~~~-----------------~~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                      ..  ...+......                 ..++++++|||++|+||+|+|++|+++
T Consensus       129 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         129 AI--SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CC--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cC--CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            32  2333333221                 123579999999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=5.5e-10  Score=86.31  Aligned_cols=88  Identities=22%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD  107 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~  107 (238)
                      .+|+++++.+.+.........++..++.    .+.|+|+|+||+|+..+.  ..+...++.+....+++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~~~~~~~l~~----~~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKEDESLADFLRK----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHHH----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeeccccccccccccccccccc----ccccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            7888888888743333344566666665    458999999999996422  1222223333334567899999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy14042        108 ELLVGILNQIRLKR  121 (238)
Q Consensus       108 elf~~i~~~l~~~~  121 (238)
                      ++++.|++.+.+..
T Consensus       154 ~L~~~i~~~l~e~~  167 (171)
T d1mkya1         154 TMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=6.6e-10  Score=87.46  Aligned_cols=114  Identities=10%  Similarity=-0.014  Sum_probs=73.9

Q ss_pred             ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----------chHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042          7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----------PSYHRVEQDVIRLHEEGYLRTRPAIIVA   68 (238)
Q Consensus         7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----------~s~~~~~~~~~~l~~~~~~~~~piilVg   68 (238)
                      ++...+.+++||    +.++..+..   ++++++++|+. +.          ..++....++..+.......+.|++|+|
T Consensus        39 ~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~  118 (200)
T d1zcba2          39 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL  118 (200)
T ss_dssp             EEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             EeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEe
Confidence            344558899999    788888776   99999999999 53          3455666666666554434789999999


Q ss_pred             EeccCCCccc----------------ccHHHHHHH----HHh-------CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         69 NKIDLARARA----------------VSSQDAKNL----AAS-------FKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        69 NK~DL~~~~~----------------v~~~~~~~~----~~~-------~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      ||+|+.....                -..+.+.++    ...       ..+.+++|||+++.||+++|..+.+.+.+.
T Consensus       119 NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         119 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            9999842110                011222222    111       124567899999999999999998777543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.88  E-value=1.9e-09  Score=84.20  Aligned_cols=87  Identities=22%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HHHHHHHHHh-C---CCeEEEEcc
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQDAKNLAAS-F---KVKFIEVSV  100 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~~-~---~~~~~evSA  100 (238)
                      .+|++++|+|. +....+ .+.....+..    .++|+++|.||+|+.......  .+..+.+.+. .   +.+++++||
T Consensus        82 ~~d~~ilv~d~~~g~~~~-~~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQ-TGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             SCCEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hccccccccccccccchh-hhhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            89999999999 432222 2333333433    579999999999997654332  1223333332 2   357999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy14042        101 GIHHNVDELLVGILNQIRL  119 (238)
Q Consensus       101 ~t~~gv~elf~~i~~~l~~  119 (238)
                      ++|+|++++++.|++.+.+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999988765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=1.9e-08  Score=78.95  Aligned_cols=86  Identities=17%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHH-HHHhCCCeEEEEccCCCC
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKN-LAASFKVKFIEVSVGIHH  104 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~-~~~~~~~~~~evSA~t~~  104 (238)
                      .+++++++.|.+...-.....+++.+..    .+.|+++|+||+|+........  +..++ +......+++.+||++|.
T Consensus       105 ~~~~vi~viD~~~~~~~~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~  180 (195)
T d1svia_         105 ELKAVVQIVDLRHAPSNDDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK  180 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred             chhhhhhhhhcccccccccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCC
Confidence            6788999988832222333456666655    5689999999999865444322  11222 222245689999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy14042        105 NVDELLVGILNQI  117 (238)
Q Consensus       105 gv~elf~~i~~~l  117 (238)
                      |+++++..|.+.+
T Consensus       181 gi~el~~~i~~~l  193 (195)
T d1svia_         181 GKDEAWGAIKKMI  193 (195)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998776

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=2.7e-08  Score=77.29  Aligned_cols=88  Identities=17%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh----C-CCeEEEEccCC
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS----F-KVKFIEVSVGI  102 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~-~~~~~evSA~t  102 (238)
                      .+|++++|+|.+.........+...+..    .+.|+|+|+||+|+.........+..+..++    . ..+++++||++
T Consensus        91 ~~dvii~v~d~~~~~~~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~  166 (186)
T d1mkya2          91 KADVVVIVLDATQGITRQDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADK  166 (186)
T ss_dssp             HCSEEEEEEETTTCCCHHHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTT
T ss_pred             cCCEEEEeecccccchhhHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCC
Confidence            7899999999944333444555555555    5689999999999975554444443333222    1 35799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy14042        103 HHNVDELLVGILNQIRL  119 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~  119 (238)
                      |.|+++|++.|.+.+..
T Consensus       167 g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         167 GWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999766544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=1.2e-08  Score=82.31  Aligned_cols=115  Identities=16%  Similarity=0.099  Sum_probs=77.1

Q ss_pred             EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----------chHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042          4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----------PSYHRVEQDVIRLHEEGYLRTRPAI   65 (238)
Q Consensus         4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----------~s~~~~~~~~~~l~~~~~~~~~pii   65 (238)
                      ++.+++  +++++||    ++++..+..   +++++++|+|+ +.          ..+.....+...+.......++|++
T Consensus        41 ~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~ii  118 (221)
T d1azta2          41 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  118 (221)
T ss_dssp             EEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred             EEEECc--EEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEE
Confidence            345554  8899999    788888876   99999999998 42          3344444444554444434789999


Q ss_pred             EEEEeccCCCcccc----c--------------------------HHHHHH-----HHH---h-----CCCeEEEEccCC
Q psy14042         66 IVANKIDLARARAV----S--------------------------SQDAKN-----LAA---S-----FKVKFIEVSVGI  102 (238)
Q Consensus        66 lVgNK~DL~~~~~v----~--------------------------~~~~~~-----~~~---~-----~~~~~~evSA~t  102 (238)
                      |+|||+||.+.+..    .                          ..++..     +..   .     ..+-+++|||.+
T Consensus       119 l~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~D  198 (221)
T d1azta2         119 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  198 (221)
T ss_dssp             EEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTC
T ss_pred             EEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceec
Confidence            99999999533211    0                          112222     111   1     123357899999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy14042        103 HHNVDELLVGILNQIRLK  120 (238)
Q Consensus       103 ~~gv~elf~~i~~~l~~~  120 (238)
                      +.+|+.+|..+.+.|...
T Consensus       199 t~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         199 TENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             HHHHHHHHHTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            999999999988777654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=9.8e-09  Score=79.96  Aligned_cols=89  Identities=24%  Similarity=0.281  Sum_probs=58.0

Q ss_pred             CceEEEEEEEC-Ccc---hHHHHHHHHHHHHHhcC-CCCCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEcc
Q psy14042         28 DETGLIIVWML-YKP---SYHRVEQDVIRLHEEGY-LRTRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSV  100 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~---s~~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA  100 (238)
                      .++.++++.+. ...   ..+....+......+.. ..++|+++|+||+|+.....    ..+.+.+..  +.+++.+||
T Consensus        79 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA  154 (185)
T d1lnza2          79 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISA  154 (185)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSS
T ss_pred             HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEEC
Confidence            56777766665 322   22222222222222222 25789999999999976432    333444443  678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy14042        101 GIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus       101 ~t~~gv~elf~~i~~~l~~~  120 (238)
                      ++|+|+++++..|++.+.+.
T Consensus       155 ~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         155 VTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CCSSTTHHHHHHHHHHHTSC
T ss_pred             CCCCCHHHHHHHHHHhhhhC
Confidence            99999999999999887543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.3e-07  Score=69.06  Aligned_cols=79  Identities=13%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      ++|++++|+|. +..+.+...-+ .    ..  ...|+++++||+|+.....  .++.... ...+.+++++||++|.|+
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~-~----~~--~~~~~i~~~~k~d~~~~~~--~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKIL-E----RI--KNKRYLVVINKVDVVEKIN--EEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHH-H----HH--TTSSEEEEEEECSSCCCCC--HHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             hCCEEEEEEeCCCCcchhhhhhh-h----hc--ccccceeeeeeccccchhh--hHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            79999999999 65554433221 1    22  5678999999999976432  2222221 124578999999999999


Q ss_pred             HHHHHHHHHH
Q psy14042        107 DELLVGILNQ  116 (238)
Q Consensus       107 ~elf~~i~~~  116 (238)
                      ++|++.|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.60  E-value=5.8e-08  Score=74.99  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CceEEEEEEEC-CcchHHHH----------HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH----hCC
Q psy14042         28 DETGLIIVWML-YKPSYHRV----------EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA----SFK   92 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~----------~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~   92 (238)
                      .+|++++|.|. +.......          ......+..    .+.|+++|+||+|+....+...........    ...
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEID  156 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHH
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHHHHHHHHHHHhcccccccC
Confidence            68999999998 33222111          122333333    579999999999986543322221111111    112


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042         93 VKFIEVSVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        93 ~~~~evSA~t~~gv~elf~~i~~~l~~  119 (238)
                      ..++++||++|+|++++++.|.+.+++
T Consensus       157 ~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         157 KVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            348899999999999999999988875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.59  E-value=2.1e-07  Score=75.16  Aligned_cols=106  Identities=17%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc---
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS---   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~---   80 (238)
                      ...+.+.|    +.|......   .+|++|+|.|....--......+..+..    .++|+|+|.||+|+.......   
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~  144 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGR  144 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred             ccccccccccceecccccchhcccccceEEEEEecccCcccchhHHHHHhhc----CCCeEEEEEECccCCCchhhhhhH
Confidence            35678899    566444433   8999999999932211222344444444    678999999999986432111   


Q ss_pred             --------------H---HHH----HHHHHh--------------CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         81 --------------S---QDA----KNLAAS--------------FKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        81 --------------~---~~~----~~~~~~--------------~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                                    .   +..    ..+.+.              ...+++.+||++|.|+++|++.|.....+.
T Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                          0   011    111111              114689999999999999999988776554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=2.5e-07  Score=70.96  Aligned_cols=86  Identities=21%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv  106 (238)
                      .++.++++.|.. +.......+...+.+    ...|.++|.||.|+.............+.+..+ .+++++||++|+|+
T Consensus        85 ~~~~~l~~~d~~-~~~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          85 DVELVIFVVEGT-RWTPDDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CEEEEEEEEETT-CCCHHHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hcceeEEEEecC-ccchhHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            666666666662 222333334444433    567899999999987665544555666666665 58999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14042        107 DELLVGILNQIR  118 (238)
Q Consensus       107 ~elf~~i~~~l~  118 (238)
                      ++|+..|++.++
T Consensus       160 ~~L~~~i~~~lp  171 (179)
T d1egaa1         160 DTIAAIVRKHLP  171 (179)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999986653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=6.3e-07  Score=70.63  Aligned_cols=69  Identities=14%  Similarity=0.080  Sum_probs=46.3

Q ss_pred             CeEEEEEEEe----CCCcc-cccC---CceEEEEEEEC-Ccch-HHHHHHHHHHHHH-hcC-CCCCCEEEEEEeccCCCc
Q psy14042          9 SGKVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YKPS-YHRVEQDVIRLHE-EGY-LRTRPAIIVANKIDLARA   76 (238)
Q Consensus         9 ~~~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~~s-~~~~~~~~~~l~~-~~~-~~~~piilVgNK~DL~~~   76 (238)
                      +..+.+.+||    ++++. ++..   .++++++|+|. +..+ +.....|+..+.. ... ...+|++||+||+||+..
T Consensus        44 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          44 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            4567899999    34432 2222   89999999999 7665 4555555554432 222 267899999999999754


Q ss_pred             c
Q psy14042         77 R   77 (238)
Q Consensus        77 ~   77 (238)
                      .
T Consensus       124 ~  124 (207)
T d2fh5b1         124 K  124 (207)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.27  E-value=7.3e-07  Score=70.64  Aligned_cols=103  Identities=24%  Similarity=0.233  Sum_probs=63.8

Q ss_pred             EEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--
Q psy14042         12 VRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--   81 (238)
Q Consensus        12 v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--   81 (238)
                      -++.+-|    +.|.. +...  .+|++|+|.|. +.-.-...+.-+..+...   .-.|+|++.||+|+........  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence            3567788    44422 2222  89999999998 421112222222222221   3458999999999976543221  


Q ss_pred             HHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         82 QDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        82 ~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .+...+....   +++++++||++|.|++++++.|...+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            2233333332   47899999999999999999888654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.26  E-value=9.2e-07  Score=69.37  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             EEEEEEEe----CCCcccc-cC--CceEEEEEEECCcch-HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042         11 KVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPS-YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s-~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--   80 (238)
                      ...+.+.|    +.|.... ..  .+|++++|.|..... -...++-+..+...   ...+++++.||+|+.+.....  
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHH
Confidence            35577888    4443322 22  799999999993322 22233333333332   334588899999997654322  


Q ss_pred             HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042         81 SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQI  117 (238)
Q Consensus        81 ~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l  117 (238)
                      .+...++.+..   .++++++||++|+|+++|++.|.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            23344444443   36899999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=4.5e-06  Score=67.23  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH--hCCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA--SFKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~--~~~~~~~evSA~t~  103 (238)
                      +.|.+++|+++ . .-+...+..++--...    .++|.+||.||+||.++.+..  ....+.+  ..+.+++.+||+++
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~--~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLR--KVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHH--HHHHHHHHHTTTSCEEECCTTTC
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHH--HHHHhhcccccceeEEEeccccc
Confidence            88999999998 4 3556667777766655    789999999999997643221  2222222  34578999999999


Q ss_pred             CCHHHHHHHH
Q psy14042        104 HNVDELLVGI  113 (238)
Q Consensus       104 ~gv~elf~~i  113 (238)
                      .|++++...+
T Consensus        84 ~g~~~L~~~l   93 (225)
T d1u0la2          84 MGIEELKEYL   93 (225)
T ss_dssp             TTHHHHHHHH
T ss_pred             hhHhhHHHHh
Confidence            9999987766

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.3e-05  Score=59.45  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=54.6

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhC--CCeEEEEccCCC
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASF--KVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~--~~~~~evSA~t~  103 (238)
                      ....++.+.+...........++..+..    ...++++++||+|+........  +...+.....  ..+++.+||++|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             heeEEEEeecccccchhHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            3344455555544444444556666554    5689999999999876433322  2223333332  357999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy14042        104 HNVDELLVGILNQ  116 (238)
Q Consensus       104 ~gv~elf~~i~~~  116 (238)
                      .|+++|++.|.+.
T Consensus       174 ~Gid~L~~~i~~~  186 (188)
T d1puia_         174 QGVDKLRQKLDTW  186 (188)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.92  E-value=3.5e-06  Score=66.45  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             EEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc---
Q psy14042         11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS---   80 (238)
Q Consensus        11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~---   80 (238)
                      ...+.+.|    +.|.. +...  .+|++|+|.|....-+...++.+..+...   .-.|+|++.||.|+....+..   
T Consensus        65 ~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i  141 (196)
T d1d2ea3          65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELV  141 (196)
T ss_dssp             SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHH
T ss_pred             eeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHH
Confidence            34567778    33322 2222  89999999999544444444444444332   446799999999997543321   


Q ss_pred             HHHHHHHHHhCC-----CeEEEEccCCC----------CCHHHHHHHHHHHH
Q psy14042         81 SQDAKNLAASFK-----VKFIEVSVGIH----------HNVDELLVGILNQI  117 (238)
Q Consensus        81 ~~~~~~~~~~~~-----~~~~evSA~t~----------~gv~elf~~i~~~l  117 (238)
                      ..+.+.+.+..+     ++++.+||++|          .|+.+|++.|.+.+
T Consensus       142 ~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            224455555443     67999999998          58888888876543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=9.8e-06  Score=65.41  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=60.1

Q ss_pred             CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCCC
Q psy14042         28 DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGIH  103 (238)
Q Consensus        28 ~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t~  103 (238)
                      +.|.+++|.+. ++ -++..+..++--...    .++|.+||.||+||..+.+...  +.........|++++.+||+++
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            89999999988 54 567777777666544    7899999999999976433211  1222333456899999999999


Q ss_pred             CCHHHHHHHH
Q psy14042        104 HNVDELLVGI  113 (238)
Q Consensus       104 ~gv~elf~~i  113 (238)
                      .|++++...+
T Consensus        86 ~gl~~L~~~l   95 (231)
T d1t9ha2          86 DSLADIIPHF   95 (231)
T ss_dssp             TTCTTTGGGG
T ss_pred             hHHHHHHHhh
Confidence            9998886654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.51  E-value=0.00015  Score=57.95  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             EEEEEEe----CCCccc-ccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccc-c--
Q psy14042         12 VRAIIWN----EQYEKL-TSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAV-S--   80 (238)
Q Consensus        12 v~l~iWD----e~~~~l-~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v-~--   80 (238)
                      .++.|.|    +.|-.- ...  .+|++|+|.|....-.....+-+..+..    .++| +|++.||.|+.+..+. .  
T Consensus        89 ~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~~~~~  164 (222)
T d1zunb3          89 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFES  164 (222)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH----cCCCEEEEEEEccccccccceehhh
Confidence            5678899    444322 222  8999999999932222222222222222    4555 7899999999753321 1  


Q ss_pred             -HHHHHHHHHhCC-----CeEEEEccCCCCCHH
Q psy14042         81 -SQDAKNLAASFK-----VKFIEVSVGIHHNVD  107 (238)
Q Consensus        81 -~~~~~~~~~~~~-----~~~~evSA~t~~gv~  107 (238)
                       ..++..+.+..+     ++|+++||++|.|+.
T Consensus       165 ~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         165 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence             224455666554     468999999999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.47  E-value=0.00013  Score=59.80  Aligned_cols=86  Identities=12%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042         28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV  106 (238)
Q Consensus        28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv  106 (238)
                      .+|.+|.|.|. ++.+..+  ..+.+   +.  .+.|+|+|.||+||..... .. ...+..+..+..++.+|+.++.++
T Consensus        15 ~~DvIl~V~DaR~P~ss~~--~~l~~---~~--~~Kp~IlVlNK~DLv~~~~-~~-~w~~~f~~~~~~~i~isa~~~~~~   85 (273)
T d1puja_          15 LIDIVYELVDARIPMSSRN--PMIED---IL--KNKPRIMLLNKADKADAAV-TQ-QWKEHFENQGIRSLSINSVNGQGL   85 (273)
T ss_dssp             GCSEEEEEEETTSTTTTSC--HHHHH---HC--SSSCEEEEEECGGGSCHHH-HH-HHHHHHHTTTCCEEECCTTTCTTG
T ss_pred             hCCEEEEEEECCCCCCCCC--HHHHH---HH--cCCCeEEEEECccCCchHH-HH-HHHHHHHhcCCccceeecccCCCc
Confidence            79999999999 6544432  12222   22  4689999999999976432 12 222333455788999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q psy14042        107 DELLVGILNQIRLKRS  122 (238)
Q Consensus       107 ~elf~~i~~~l~~~~~  122 (238)
                      .++...+.+.+.+...
T Consensus        86 ~~~~~~~~~~l~~~~~  101 (273)
T d1puja_          86 NQIVPASKEILQEKFD  101 (273)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhh
Confidence            9888888777665543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00011  Score=56.93  Aligned_cols=68  Identities=16%  Similarity=0.089  Sum_probs=46.1

Q ss_pred             eEEEEEEEe----CCCcccccC-------CceEEEEEEEC--CcchHHHHHHHHHHHH---HhcCCCCCCEEEEEEeccC
Q psy14042         10 GKVRAIIWN----EQYEKLTSS-------DETGLIIVWML--YKPSYHRVEQDVIRLH---EEGYLRTRPAIIVANKIDL   73 (238)
Q Consensus        10 ~~v~l~iWD----e~~~~l~~~-------~ad~~IlV~dv--d~~s~~~~~~~~~~l~---~~~~~~~~piilVgNK~DL   73 (238)
                      ....+.+||    ++++..+..       .++.+++++|.  +..+++....|+.++.   +.....+.|+++|+||+|+
T Consensus        44 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~  123 (209)
T d1nrjb_          44 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  123 (209)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             CCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecc
Confidence            345678999    443333322       56888888887  6778888877765543   2223478999999999999


Q ss_pred             CCcc
Q psy14042         74 ARAR   77 (238)
Q Consensus        74 ~~~~   77 (238)
                      ....
T Consensus       124 ~~~~  127 (209)
T d1nrjb_         124 FTAR  127 (209)
T ss_dssp             TTCC
T ss_pred             cccC
Confidence            7543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.00011  Score=57.78  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             EEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc---
Q psy14042         12 VRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS---   80 (238)
Q Consensus        12 v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~---   80 (238)
                      .++.|.|    +.|-.-. ..  .+|++|+|.|.+..-....++.+..+..    .++| ++++.||.|+.+..+..   
T Consensus        67 ~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~  142 (204)
T d2c78a3          67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLV  142 (204)
T ss_dssp             CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             eEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHH
Confidence            5667889    4443322 22  8999999999944433333344444433    5666 67789999996543321   


Q ss_pred             HHHHHHHHHhCC-----CeEEEEccCC
Q psy14042         81 SQDAKNLAASFK-----VKFIEVSVGI  102 (238)
Q Consensus        81 ~~~~~~~~~~~~-----~~~~evSA~t  102 (238)
                      ..+++.+....+     ++++..||..
T Consensus       143 ~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         143 EMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHHHhcCCCcccceeeeeechh
Confidence            234444444433     5688888863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.04  E-value=0.00041  Score=55.98  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEECCcchHH-------HHHHHHHHHHHhcCCCCC-CEEEEEEeccCCCc
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYH-------RVEQDVIRLHEEGYLRTR-PAIIVANKIDLARA   76 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~-------~~~~~~~~l~~~~~~~~~-piilVgNK~DL~~~   76 (238)
                      .++.+-|    ..|-.....   .+|++|+|.|....-+.       ....-+..+..    .++ +++++.||.|+...
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSV  177 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTC
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCcc
Confidence            4577788    444332222   89999999999554433       12222222222    345 48899999999632


Q ss_pred             c---cccH---HHHHHHHHhC-------CCeEEEEccCCCCCHHHHHH
Q psy14042         77 R---AVSS---QDAKNLAASF-------KVKFIEVSVGIHHNVDELLV  111 (238)
Q Consensus        77 ~---~v~~---~~~~~~~~~~-------~~~~~evSA~t~~gv~elf~  111 (238)
                      .   ....   ++...+.+..       .++|+++||++|+||.+++.
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            1   1111   1222222221       25799999999999976543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.96  E-value=0.0011  Score=51.94  Aligned_cols=86  Identities=13%  Similarity=0.057  Sum_probs=50.8

Q ss_pred             CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH---------------------
Q psy14042         28 DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ---------------------   82 (238)
Q Consensus        28 ~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~---------------------   82 (238)
                      ..++++++.|. .   +..+.........+.. .  -..|.++|.||+|+.........                     
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~-~--~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDL-R--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQ  199 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH-H--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHHH-H--hCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            45677888877 2   2232222211111111 1  46899999999999754322110                     


Q ss_pred             --HHH---HHHHh--CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042         83 --DAK---NLAAS--FKVKFIEVSVGIHHNVDELLVGILNQ  116 (238)
Q Consensus        83 --~~~---~~~~~--~~~~~~evSA~t~~gv~elf~~i~~~  116 (238)
                        ...   ...++  ..++++.+||++|+|+++++..|.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         200 GLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence              000   01111  24689999999999999999888764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.0071  Score=49.36  Aligned_cols=58  Identities=19%  Similarity=0.102  Sum_probs=38.7

Q ss_pred             EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042         12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus        12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      .++.|.|    ..|..-...   -+|++|+|.|. +----+..+.| ....+    .+.|.+++.||.|.+
T Consensus        71 ~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~----~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          71 HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKT  136 (276)
T ss_dssp             EEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT----TTCCEEEEEECTTST
T ss_pred             eEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH----cCCCEEEEEeccccc
Confidence            6788999    444433333   89999999999 43223322333 33333    689999999999973

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.65  E-value=0.0036  Score=50.99  Aligned_cols=63  Identities=10%  Similarity=0.044  Sum_probs=40.2

Q ss_pred             EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      ++.++  .++.++|    ..|..-...   -+|++|+|.|. +--.-+..+.| ..+.+    .+.|.+++.||.|..
T Consensus        62 ~~~~~--~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          62 LLFRG--HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEETT--EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECGGGC
T ss_pred             ccccc--cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----ccccccccccccccc
Confidence            44555  4678999    334322222   79999999999 43333333333 34444    679999999999963

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.00087  Score=53.05  Aligned_cols=97  Identities=20%  Similarity=0.216  Sum_probs=55.8

Q ss_pred             EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHH----HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--
Q psy14042         11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHR----VEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--   77 (238)
Q Consensus        11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~----~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--   77 (238)
                      ...+.|-|    +.|......   -+|++|+|.|....-+..    ..+..+.+.......-.++|++.||.|+....  
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcccc
Confidence            36678889    555433322   899999999994332211    11122221111112445688999999996421  


Q ss_pred             cc----cHHHHHHHHHhC-----CCeEEEEccCCCCCHH
Q psy14042         78 AV----SSQDAKNLAASF-----KVKFIEVSVGIHHNVD  107 (238)
Q Consensus        78 ~v----~~~~~~~~~~~~-----~~~~~evSA~t~~gv~  107 (238)
                      ..    ...+...+....     .++++++||.+|.|+.
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            11    112344444443     3578999999999875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.37  E-value=0.0032  Score=52.67  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=40.3

Q ss_pred             CCEEEEEEeccCCCcccccHHHHHHHHH----------hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042         62 RPAIIVANKIDLARARAVSSQDAKNLAA----------SFKVKFIEVSVGIHHNVDELLVGILNQIRLK  120 (238)
Q Consensus        62 ~piilVgNK~DL~~~~~v~~~~~~~~~~----------~~~~~~~evSA~t~~gv~elf~~i~~~l~~~  120 (238)
                      .+=++|.||+|+.............+..          .+..+++.+||+++.|++++...|.+.....
T Consensus       190 ~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         190 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            3458899999987654433222211111          1345799999999999999999998766543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0073  Score=48.16  Aligned_cols=94  Identities=14%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             EEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHH-------HHHHHHHHHHhcCCCCCC-EEEEEEeccCCC
Q psy14042         11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHR-------VEQDVIRLHEEGYLRTRP-AIIVANKIDLAR   75 (238)
Q Consensus        11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~-------~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~   75 (238)
                      ..++.|-|    ..|-. +...  .+|++|+|.|.....|+.       .+.-+..+..    -++| +|++.||.|+..
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCC
Confidence            36789999    55532 3333  899999999996655532       1111112222    4565 788999999875


Q ss_pred             cccc-c---HHHHHHHHHhCC-----CeEEEEccCCCCCHHH
Q psy14042         76 ARAV-S---SQDAKNLAASFK-----VKFIEVSVGIHHNVDE  108 (238)
Q Consensus        76 ~~~v-~---~~~~~~~~~~~~-----~~~~evSA~t~~gv~e  108 (238)
                      .... .   .++...+.+..+     ++|+.+||..|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3221 1   123444444433     5689999999988643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0023  Score=53.71  Aligned_cols=84  Identities=15%  Similarity=0.094  Sum_probs=49.2

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HHHHHHHHH-------hCCCeEEEE
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQDAKNLAA-------SFKVKFIEV   98 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~-------~~~~~~~ev   98 (238)
                      .+|.+++|.+  ++.-+.++.....+.+      .+-++|.||+|++......  ..+......       .+..+++.|
T Consensus       167 ~aD~~l~v~~--P~~Gd~iq~~k~gi~e------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~  238 (327)
T d2p67a1         167 MVDCFISLQI--AGGGDDLQGIKKGLME------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTC  238 (327)
T ss_dssp             TCSEEEEEEC--C------CCCCHHHHH------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEEC
T ss_pred             ccceEEEEec--CCCchhhhhhchhhhc------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEE
Confidence            5777777654  3444444433333333      2337888999997643321  112222221       234579999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy14042         99 SVGIHHNVDELLVGILNQIRL  119 (238)
Q Consensus        99 SA~t~~gv~elf~~i~~~l~~  119 (238)
                      ||.+|+|+++++..|.+....
T Consensus       239 SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         239 SALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             BGGGTBSHHHHHHHHHHHHHH
T ss_pred             EeeCCCCHHHHHHHHHHHHHH
Confidence            999999999999999876543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.10  E-value=0.074  Score=41.49  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             eEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCce
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMG  212 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~  212 (238)
                      ..+.++.+|. ++|......           ..+..+.|+|++..+..|..+|.|++||. .|..+..+.-|      ..
T Consensus       240 ~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H------~~  313 (340)
T d1tbga_         240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH------DN  313 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC------SS
T ss_pred             EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC------CC
Confidence            4456677776 777644221           13667899999999999999999999997 57777766544      45


Q ss_pred             eEEEEEeecC
Q psy14042        213 EIAALKYYLN  222 (238)
Q Consensus       213 ~i~~~~w~~~  222 (238)
                      +|.+|.|...
T Consensus       314 ~V~~l~~s~d  323 (340)
T d1tbga_         314 RVSCLGVTDD  323 (340)
T ss_dssp             CEEEEEECTT
T ss_pred             CEEEEEEeCC
Confidence            7999999754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.048  Score=44.00  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecCCCccccccccc
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFE  233 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~~~~~~~~~  233 (238)
                      .+....|+|++..+..|..+|.|++||.. |..+..+.-|      ..+|.++.|.....-.+..+-++
T Consensus       310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H------~~~V~~~~~~~~~~~spd~~~l~  372 (388)
T d1erja_         310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH------RNSVISVAVANGSSLGPEYNVFA  372 (388)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSCTTCTTCEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC------CCCEEEEEEecCcccCCCCCEEE
Confidence            46778999999999999999999999974 8888777655      45788888876544333333333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.89  E-value=0.034  Score=43.58  Aligned_cols=51  Identities=18%  Similarity=0.360  Sum_probs=41.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|+|||. .|..+..+..+      ..+|.++.|...
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~------~~~v~~v~~~~~  108 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR------SSWVMTCAYAPS  108 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS------CSCEEEEEECTT
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecc------cccEEeeEeecc
Confidence            7888999999999999999999999998 47777776655      446777777543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.033  Score=46.60  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=42.3

Q ss_pred             CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042          8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA   74 (238)
Q Consensus         8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~   74 (238)
                      +++.+.+.+.|    ..|..-...   -+|++|+|.|. +--..+..+ .+..+.+    .+.|++++.||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECcccc
Confidence            34568899999    455443332   89999999999 433333333 3333444    579999999999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.11  Score=39.64  Aligned_cols=70  Identities=17%  Similarity=0.337  Sum_probs=50.9

Q ss_pred             EEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEE
Q psy14042        147 VIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIA  215 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~  215 (238)
                      ...++.+|. ++|...-.+         ..+....|+|++..+..|..+|.|++||.. |..+..+.-|      ..+|.
T Consensus       220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h------~~~V~  293 (317)
T d1vyhc1         220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------EHFVT  293 (317)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC------SSCEE
T ss_pred             eEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC------CCCEE
Confidence            445566666 666543211         145678999999999999999999999984 7767766654      45799


Q ss_pred             EEEeecC
Q psy14042        216 ALKYYLN  222 (238)
Q Consensus       216 ~~~w~~~  222 (238)
                      ++.|...
T Consensus       294 ~~~~s~~  300 (317)
T d1vyhc1         294 SLDFHKT  300 (317)
T ss_dssp             EEEECSS
T ss_pred             EEEEcCC
Confidence            9999754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.054  Score=41.50  Aligned_cols=51  Identities=14%  Similarity=0.298  Sum_probs=40.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+.-|..+|.|+|||.. |..+..+..+      ..+|.++.|...
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h------~~~V~~~~~~~~   70 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDHS   70 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECTT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCC------CCcEEEEeeecc
Confidence            78889999999999999999999999974 7777666544      345777777653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.09  E-value=0.044  Score=44.81  Aligned_cols=53  Identities=17%  Similarity=0.387  Sum_probs=39.6

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee-eecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS-MWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+.++.|+|++..+.+|+.+|.|+|||..+.-...+. +.   + ...+|-+|.|..+
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~---g-H~~~V~~l~fsp~   62 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---E-HNGQVTGVDWAPD   62 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---C-CSSCEEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec---C-CCCCEEEEEECCC
Confidence            6889999999999999999999999998765332222 22   1 1456888888754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=93.61  E-value=0.12  Score=40.46  Aligned_cols=44  Identities=9%  Similarity=0.147  Sum_probs=38.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGS  209 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~  209 (238)
                      .+..+.|+||++.++.|..+|.|+|||.+ |..+..+.++.++.+
T Consensus       293 ~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCCB
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCCcc
Confidence            45578899999999999999999999996 888999999877653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.61  E-value=0.099  Score=41.81  Aligned_cols=53  Identities=9%  Similarity=0.045  Sum_probs=39.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|+++.+..|..+|.|+|||..+. ...+..+...    ..+|.+|.|...
T Consensus        60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~d  113 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDSE  113 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECTT
T ss_pred             CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccc----cCcccccccccc
Confidence            7889999999999999999999999998643 3333333311    346888888653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.29  E-value=0.26  Score=39.20  Aligned_cols=73  Identities=10%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             eEEeecccCc-eeeecccce----------------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042        146 AVIVGSVDGN-RIWGKEFKK----------------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP  207 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~----------------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~  207 (238)
                      ....++.+|. ++|...-..                ..+....|+|++..+..|..+|.|+|||.+ |..+..+..+.  
T Consensus       203 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~--  280 (311)
T d1nr0a1         203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT--  280 (311)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC--
Confidence            3445666777 777542110                146788999999999999999999999974 66665554432  


Q ss_pred             CCCceeEEEEEeec
Q psy14042        208 GSEMGEIAALKYYL  221 (238)
Q Consensus       208 ~~~~~~i~~~~w~~  221 (238)
                       .....++++.|..
T Consensus       281 -~~~~~~~~~~~~~  293 (311)
T d1nr0a1         281 -RIEDQQLGIIWTK  293 (311)
T ss_dssp             -SGGGCEEEEEECS
T ss_pred             -CccceEEEEEecC
Confidence             2234567888854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.04  E-value=0.09  Score=44.65  Aligned_cols=89  Identities=11%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc-------ccccHH----HH----HHHHHhCC
Q psy14042         28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA-------RAVSSQ----DA----KNLAASFK   92 (238)
Q Consensus        28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~-------~~v~~~----~~----~~~~~~~~   92 (238)
                      .+|.+|++.|.+ -+ +.-..+...+.+    .+.|+++|.||+|....       .....+    +.    ....+..+
T Consensus       135 ~~d~~l~~~~~~-~~-~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISATR-FK-KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEESSC-CC-HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecCCC-CC-HHHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            677777765542 11 222345556655    57899999999996310       111111    11    11222333


Q ss_pred             ---CeEEEEccCC--CCCHHHHHHHHHHHHHhhhc
Q psy14042         93 ---VKFIEVSVGI--HHNVDELLVGILNQIRLKRS  122 (238)
Q Consensus        93 ---~~~~evSA~t--~~gv~elf~~i~~~l~~~~~  122 (238)
                         -++|.+|...  .+++.++...+.+.+++.++
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence               2578888764  46899999999888766543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.44  E-value=0.23  Score=38.47  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWS  205 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~  205 (238)
                      .+....|+||++.++.|..+|+|.|||.. +..+..++++-
T Consensus       281 ~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            45678999999999999999999999985 88888888863

>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Obg GTP-binding protein C-terminal domain
superfamily: Obg GTP-binding protein C-terminal domain
family: Obg GTP-binding protein C-terminal domain
domain: Obg GTP-binding protein C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.42  E-value=0.0058  Score=40.02  Aligned_cols=37  Identities=11%  Similarity=0.119  Sum_probs=33.5

Q ss_pred             cceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEE
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLF  181 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~  181 (238)
                      .++.++...+|. +|.|+.+++ ++.+++|++++++.+|
T Consensus         2 ~g~~V~~~~dg~f~V~G~~ier-~~~~t~~~~~e~~~~f   39 (76)
T d1udxa3           2 AGVEVVPVAEGVYEVRAPEVER-YLARIKGDLMEAAGYL   39 (76)
T ss_dssp             CCCEEEEEETTEEEEECHHHHH-HHTTEEECTGGGHHHH
T ss_pred             CceEEEECCCCeEEEEccHHHH-HHHhcCCCCHHHHHHH
Confidence            467888889998 999999999 9999999999998877

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.2  Score=37.59  Aligned_cols=43  Identities=14%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             eCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEee
Q psy14042        172 WTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYY  220 (238)
Q Consensus       172 ~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~  220 (238)
                      +++++..+.-|..+|.|+|||.+ |..+..+.-|      ..+|.+|.|.
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H------~~~V~~v~~~   64 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH------TGSVLCLQYD   64 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSSCCEEEEECCC------SSCEEEEECC
T ss_pred             EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCCEeeeecc
Confidence            34577888888899999999874 6666655533      3457777773

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.54  Score=38.19  Aligned_cols=77  Identities=17%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             cceEEeecccCc-eeeecc----c------------ceeeeEEEEeCCCCCeEEEEeeCc---eEEEEeCC-CCeeeeee
Q psy14042        144 ASAVIVGSVDGN-RIWGKE----F------------KKTSMLGVQWTSDSQNLLFAIKGG---QVHLYDYE-GNFMNKVS  202 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~----~------------~~~~~~~~~~~~~~~~~~~g~~~g---~~~~~d~~-g~~~~~~~  202 (238)
                      ++..+.++.||. ++|...    +            .. .+..+.|+|++..+..|..++   .|++||.+ |..+..+.
T Consensus       195 dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         195 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEeecccccccccccccccccccc-eEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence            456778899998 999532    1            11 567889999999999998886   59999984 77776665


Q ss_pred             eecCCC-------CCceeEEEEEeec
Q psy14042        203 MWSGPG-------SEMGEIAALKYYL  221 (238)
Q Consensus       203 ~~~~~~-------~~~~~i~~~~w~~  221 (238)
                      ......       .....|-+|.|..
T Consensus       274 ~~~~~~~~~~~~~gH~~~V~~l~fsp  299 (393)
T d1sq9a_         274 VPTHSSQASLGEFAHSSWVMSLSFND  299 (393)
T ss_dssp             BC--------CCBSBSSCEEEEEECS
T ss_pred             cccccccceeeeecccCceeeeccCC
Confidence            432211       1134577777753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.04  E-value=0.15  Score=39.20  Aligned_cols=54  Identities=9%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|+.+|.|+|||.+.. ....+.....   ...+|.++.|..+
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~---h~~~V~~v~f~~~   67 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR---YKHPLLCCNFIDN   67 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE---CSSCEEEEEEEES
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC---CCCCEEEEEEeCC
Confidence            7889999999999999999999999997532 2222221111   1346888888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.59  E-value=0.33  Score=37.36  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|+++.+..|..+|.|++||.. |..+..+     ......+|.++.|..+
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-----~~~h~~~v~~v~~~~~   66 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-----PDVHATMITGIKTTSK   66 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-----SCSCSSCEEEEEECTT
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----cCCCCCcEEEEEeecc
Confidence            78889999999999999999999999975 4444322     1112345777777653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.72  Score=36.37  Aligned_cols=50  Identities=8%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+....|+|++..+..|+.+|.+++||.......+...+      ..+|-++.|..
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~i~~v~~s~  275 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH------ESCVLSLKFAY  275 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC------SSCEEEEEECT
T ss_pred             ceEEEEEcccccccceecccccccccccccccccccccc------ccccceEEECC
Confidence            667788999999999999999999999876554443333      34567777754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.96  E-value=0.36  Score=38.95  Aligned_cols=50  Identities=12%  Similarity=0.152  Sum_probs=38.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|++..+..|..+|.|.+||.. |..+..+..+      ..+|.++.|..
T Consensus       203 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~s~~fs~  253 (371)
T d1k8kc_         203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE------TLPLLAVTFIT  253 (371)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS------SCCEEEEEEEE
T ss_pred             cEEEEEeecccccccccccCCcceEEeeecccceeeeecc------cccceeeeecC
Confidence            46778999999999999999999999985 5555555544      44677777754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=1.5  Score=34.28  Aligned_cols=69  Identities=10%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             EEeecccCc-eeeecccc--------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEE
Q psy14042        147 VIVGSVDGN-RIWGKEFK--------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAA  216 (238)
Q Consensus       147 ~~~~~~~g~-rv~g~~~~--------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~  216 (238)
                      .+++..+|. ++|...-.        ...+..+.|+|+++.+..|..+|.|++||.. |..+..+.       ...+|.+
T Consensus       239 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------~~~~v~~  311 (337)
T d1gxra_         239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------ESSSVLS  311 (337)
T ss_dssp             EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CSSCEEE
T ss_pred             cceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-------CCCCEEE
Confidence            345566665 66653321        1257788999999999999999999999985 66555433       1347888


Q ss_pred             EEeecC
Q psy14042        217 LKYYLN  222 (238)
Q Consensus       217 ~~w~~~  222 (238)
                      +.|..+
T Consensus       312 ~~~s~d  317 (337)
T d1gxra_         312 CDISVD  317 (337)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.80  E-value=0.54  Score=36.65  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             eeEEEEeCCCCCeEEEEeeCc--eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGG--QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g--~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+||++.+.++..++  .|++||..+..+.++.-+      ...|.++.|..
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~------~~~v~~~~~sp   95 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN------LGNVFAMGVDR   95 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC------CCSEEEEEECT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC------CceEEeeeecc
Confidence            677899999999998876553  689999998877665543      33455666644

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.49  E-value=0.31  Score=38.13  Aligned_cols=39  Identities=10%  Similarity=0.203  Sum_probs=31.8

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW  204 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~  204 (238)
                      .+..+.|+||++.+.++..+|.|++||.. |.-...+.+.
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            56678999999999999999999999984 5555555443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=0.73  Score=34.94  Aligned_cols=50  Identities=6%  Similarity=0.145  Sum_probs=36.1

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEee
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYY  220 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~  220 (238)
                      .+..+.|+|++..+.-|..+|.|++||.+ |..+..+.     .....+++++.|.
T Consensus       253 ~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-----~~~~~~~~~~s~~  303 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-----KFNEDSVVKIACS  303 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----CCSSSEEEEEEEC
T ss_pred             cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-----CCCCCEEEEEEeC
Confidence            35678999999999999999999999986 44444332     2224456666664

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.21  E-value=0.66  Score=35.29  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=37.0

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee--eeeeecCCCCCceeEEEEEeecC
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN--KVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~--~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      .+..+.|+|++..+..|..+|.|++||.......  .+..+      ..+|.++.|...
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h------~~~v~~~~~~p~  216 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR------TSKINAISWKPA  216 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC------SSCEEEEEECCC
T ss_pred             ceeEEEeccCccccccccccccccceeeccccccccccccc------ccccceeeeccc
Confidence            5778899999999999999999999998754432  12222      345677777543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.11  E-value=0.68  Score=35.41  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=38.2

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      ....+.|+|++..+..|+.+|.|++||..+.....+.....    ..+|.++.|..
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~  189 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH----PAEITSVAFSN  189 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC----SSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc----ccccccccccc
Confidence            45677899999999999999999999988766554443321    23566666654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.90  E-value=0.38  Score=37.11  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042        173 TSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN  222 (238)
Q Consensus       173 ~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~  222 (238)
                      ++++..+.-|..+|.|+|||.+ |..+..+.-|      ..+|-+|.|..+
T Consensus        20 ~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H------~~~V~~l~~s~~   64 (355)
T d1nexb2          20 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKYAHG   64 (355)
T ss_dssp             EEETTEEEEEETTTEEEEEETTTTEEEEEEECC------SSCEEEEEEETT
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCcEEEEEECC------CCCEEEEEEcCC
Confidence            3457899999999999999984 7777776655      457888888643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.87  E-value=0.33  Score=39.53  Aligned_cols=40  Identities=13%  Similarity=0.264  Sum_probs=34.5

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWS  205 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~  205 (238)
                      .+..+.|+|++..+.-|..+|.|+|||. .|..+..++-|.
T Consensus       291 ~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence            4778899999999999999999999997 488888776553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=1.8  Score=32.68  Aligned_cols=78  Identities=15%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             cceEEeecccCc-eeeeccccee----------eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCc
Q psy14042        144 ASAVIVGSVDGN-RIWGKEFKKT----------SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEM  211 (238)
Q Consensus       144 ~~~~~~~~~~g~-rv~g~~~~~~----------~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~  211 (238)
                      ....+.++.+|. ++|...-.+.          ......++.++..+..|..+|.|++||. .|..+..+......+ ..
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~-~~  305 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG-SG  305 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG-GT
T ss_pred             CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC-CC
Confidence            355667778887 8886432210          0111233445678899999999999996 588888776542222 24


Q ss_pred             eeEEEEEeecC
Q psy14042        212 GEIAALKYYLN  222 (238)
Q Consensus       212 ~~i~~~~w~~~  222 (238)
                      .+|-++.|..+
T Consensus       306 ~~v~~v~~s~~  316 (342)
T d2ovrb2         306 GVVWRIRASNT  316 (342)
T ss_dssp             CEEEEEEECSS
T ss_pred             CCEEEEEECCC
Confidence            46888888654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.93  E-value=0.94  Score=35.79  Aligned_cols=50  Identities=16%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      .+..+.|+|+++.+..|..+|.|++||.. |..+..+.-+      ..+|.++.|..
T Consensus       123 ~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h------~~~v~~~~~~~  173 (388)
T d1erja_         123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFP  173 (388)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECT
T ss_pred             CEEEEEECCCCCcceecccccccccccccccccccccccc------ccccccccccc
Confidence            46788999999999999999999999985 4444443322      33456666554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.06  E-value=4.3  Score=31.48  Aligned_cols=74  Identities=14%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             eEEeecccCc-eeeecccceeee----------EEEEeC---CCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCC
Q psy14042        146 AVIVGSVDGN-RIWGKEFKKTSM----------LGVQWT---SDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSE  210 (238)
Q Consensus       146 ~~~~~~~~g~-rv~g~~~~~~~~----------~~~~~~---~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~  210 (238)
                      +.+.+..+|. ++|..+-.+ .+          ..+.|+   |++..+..|+.+|.|+|||.. |..+..+.++..  ..
T Consensus       220 ~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--~~  296 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ--QL  296 (325)
T ss_dssp             EEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT--CG
T ss_pred             eccccccccceeeeeecccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC--cc
Confidence            4455677887 888643222 11          112343   678899999999999999975 666766665522  12


Q ss_pred             ceeEEEEEeecC
Q psy14042        211 MGEIAALKYYLN  222 (238)
Q Consensus       211 ~~~i~~~~w~~~  222 (238)
                      .....++.|..+
T Consensus       297 ~~~~~~~~~~~~  308 (325)
T d1pgua1         297 GNQQVGVVATGN  308 (325)
T ss_dssp             GGCEEEEEEEET
T ss_pred             cCeEEEEEECCC
Confidence            334556667643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=1.1  Score=34.13  Aligned_cols=44  Identities=5%  Similarity=0.064  Sum_probs=32.4

Q ss_pred             eCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042        172 WTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYL  221 (238)
Q Consensus       172 ~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~  221 (238)
                      ++++++.+.-|..+|.|+|||. .|..+..+.-|      ..+|.++.|..
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h------~~~V~~v~~~~   67 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------TGGVWSSQMRD   67 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCC------SSCEEEEEEET
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCC------CCCEEEEEeCC
Confidence            3446788889999999999998 47777665543      34677787754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.51  E-value=2.7  Score=32.49  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             eeEEEEeCCCCCeEEE--EeeCceEEEEeC-CCCeeeeee
Q psy14042        166 SMLGVQWTSDSQNLLF--AIKGGQVHLYDY-EGNFMNKVS  202 (238)
Q Consensus       166 ~~~~~~~~~~~~~~~~--g~~~g~~~~~d~-~g~~~~~~~  202 (238)
                      ....+.|+||++.+++  +..+|.|+|||. .|..+..+.
T Consensus       301 ~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         301 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            5667899999985544  455899999998 588887765