Psyllid ID: psy14054

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
MSNPPDTAVTKSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWAN
ccccccccEEccccEEEEcccccccccccccHHHHHcccEEEEEEHHHHHHHHcccccEEEEEEEEEccccEEEEEEEEEEEcccccccccHHHHHHHHHHcccccccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccEEccccHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEEccccccccccccccHHHHHHHHHHHHHHcc
cccccccEEEEEEEEccccccccHcHHHHHHHHHHHHcccccEccHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEEEEEcccccHHHHHHHHHccccccEcccEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHcEcccccEcccccEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEccccHHHcEEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHccccHHHEEcccEEccccccccccccccHHHHHHHHHHccc
msnppdtavtksnnevildannekpvnddlseDEEAVLNFVTyldrdedivmtgqrnpfygkykvgfsksgklQVCEVWLYnnagcsydlSTAVMRRAIFHctnsfyvphvRVNAFVCktnlssntafrafgapqSLLIAETMGHHVAQFLKLDyadfarsnlfvtgnlTHYNQVLehctlgrcfeqvhesgkYKERRKQCEEFNRHnrlrkrgvaiVPVLFGVAFETLFLNQAGALVLIYVDGSvlishcgtemgqgIHTKMIQVAARglnipaelifinetatdkvpnasptaasvgsdlnGMAILWAN
msnppdtavtksnnevildannekpvnddlsedEEAVLNFVtyldrdedivmtgqrNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEefnrhnrlrkrgvAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINEtatdkvpnasptaasvgsdlnGMAILWAN
MSNPPDTAVTKSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWAN
***********************************AVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKY******CEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETA*********************AIL***
******T***KSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWAN
**********KSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQV***********QCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWAN
*SNPPDTAVTKSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVP****************AILWA*
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNPPDTAVTKSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query311 2.2.26 [Sep-21-2011]
P10351 1335 Xanthine dehydrogenase OS yes N/A 0.858 0.2 0.573 3e-87
P91711 1344 Xanthine dehydrogenase OS N/A N/A 0.858 0.198 0.565 3e-86
P22811 1343 Xanthine dehydrogenase OS yes N/A 0.858 0.198 0.558 2e-85
P47990 1358 Xanthine dehydrogenase/ox yes N/A 0.848 0.194 0.553 1e-83
P08793 1353 Xanthine dehydrogenase OS N/A N/A 0.858 0.197 0.539 2e-83
Q9MYW6 1331 Xanthine dehydrogenase/ox N/A N/A 0.858 0.200 0.520 4e-80
Q00519 1335 Xanthine dehydrogenase/ox yes N/A 0.858 0.2 0.528 1e-79
P47989 1333 Xanthine dehydrogenase/ox yes N/A 0.858 0.200 0.516 6e-79
P22985 1331 Xanthine dehydrogenase/ox yes N/A 0.858 0.200 0.516 1e-78
Q6AUV1 1369 Xanthine dehydrogenase OS yes N/A 0.852 0.193 0.528 1e-77
>sp|P10351|XDH_DROME Xanthine dehydrogenase OS=Drosophila melanogaster GN=ry PE=2 SV=2 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 195/267 (73%)

Query: 44   LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
            LDRDED+++TG R+PF  KYKVGF+K G +  C++  YNNAG S DLS +V+ RA+FH  
Sbjct: 832  LDRDEDMLITGTRHPFLFKYKVGFTKEGLITACDIECYNNAGWSMDLSFSVLERAMFHFE 891

Query: 104  NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
            N + +P+VRV  +VCKTNL SNTAFR FG PQ +   E +   VA+ +  D  D  R N 
Sbjct: 892  NCYRIPNVRVGGWVCKTNLPSNTAFRGFGGPQGMYAGEHIIRDVARIVGRDVVDVMRLNF 951

Query: 164  FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
            + TG+ THY+Q LEH  + RC E   +  +Y E+R++   FNR NR RKRG+A+VP  +G
Sbjct: 952  YKTGDYTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRENRWRKRGMAVVPTKYG 1011

Query: 224  VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
            +AF  + LNQAG+L+ IY DGSVL+SH G E+GQG++TKMIQ AAR L IP+ELI I+ET
Sbjct: 1012 IAFGVMHLNQAGSLINIYGDGSVLLSHGGVEIGQGLNTKMIQCAARALGIPSELIHISET 1071

Query: 284  ATDKVPNASPTAASVGSDLNGMAILWA 310
            ATDKVPN SPTAASVGSDLNGMA+L A
Sbjct: 1072 ATDKVPNTSPTAASVGSDLNGMAVLDA 1098
Key enzyme in purine degradation. Catalyzes the oxidation of hypoxanthine to xanthine. Catalyzes the oxidation of xanthine to uric acid.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 4
>sp|P91711|XDH_DROSU Xanthine dehydrogenase OS=Drosophila subobscura GN=Xdh PE=3 SV=1 Back     alignment and function description
>sp|P22811|XDH_DROPS Xanthine dehydrogenase OS=Drosophila pseudoobscura pseudoobscura GN=ry PE=3 SV=2 Back     alignment and function description
>sp|P47990|XDH_CHICK Xanthine dehydrogenase/oxidase OS=Gallus gallus GN=XDH PE=1 SV=1 Back     alignment and function description
>sp|P08793|XDH_CALVI Xanthine dehydrogenase OS=Calliphora vicina GN=XDH PE=2 SV=1 Back     alignment and function description
>sp|Q9MYW6|XDH_FELCA Xanthine dehydrogenase/oxidase OS=Felis catus GN=XDH PE=2 SV=3 Back     alignment and function description
>sp|Q00519|XDH_MOUSE Xanthine dehydrogenase/oxidase OS=Mus musculus GN=Xdh PE=1 SV=5 Back     alignment and function description
>sp|P47989|XDH_HUMAN Xanthine dehydrogenase/oxidase OS=Homo sapiens GN=XDH PE=1 SV=4 Back     alignment and function description
>sp|P22985|XDH_RAT Xanthine dehydrogenase/oxidase OS=Rattus norvegicus GN=Xdh PE=1 SV=3 Back     alignment and function description
>sp|Q6AUV1|XDH_ORYSJ Xanthine dehydrogenase OS=Oryza sativa subsp. japonica GN=XDH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
170036545 1329 xanthine dehydrogenase [Culex quinquefas 0.852 0.199 0.584 7e-90
17737937 1335 rosy [Drosophila melanogaster] gi|321724 0.858 0.2 0.573 2e-85
20151365 735 GH08847p [Drosophila melanogaster] 0.852 0.360 0.573 2e-85
321453842 1366 hypothetical protein DAPPUDRAFT_303976 [ 0.858 0.195 0.561 2e-85
195329368 1335 GM24078 [Drosophila sechellia] gi|194120 0.858 0.2 0.573 3e-85
33391854 1321 xanthine dehydrogenase [Drosophila simul 0.858 0.202 0.573 3e-85
8831 1335 xanthine dehydrogenase [Drosophila melan 0.858 0.2 0.573 3e-85
33391858 1321 xanthine dehydrogenase [Drosophila yakub 0.858 0.202 0.569 4e-85
383858816 1357 PREDICTED: xanthine dehydrogenase-like [ 0.858 0.196 0.576 5e-85
195500668 1335 ry [Drosophila yakuba] gi|194183572|gb|E 0.858 0.2 0.569 6e-85
>gi|170036545|ref|XP_001846124.1| xanthine dehydrogenase [Culex quinquefasciatus] gi|167879192|gb|EDS42575.1| xanthine dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 201/265 (75%)

Query: 44   LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
            LDRDED+ +TG R+PFY  YKVG  K G+L   +   YNNAG S DLS +V+ RA+FH  
Sbjct: 827  LDRDEDMAITGTRHPFYFTYKVGVDKDGRLLAADFKAYNNAGYSMDLSFSVLERAMFHIQ 886

Query: 104  NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
            NS+ VP++RV  +VCKTNL SNTAFR FG PQ +L AETM HHVA+ L  DY +    NL
Sbjct: 887  NSYKVPNLRVQGWVCKTNLPSNTAFRGFGGPQGMLAAETMMHHVARALGRDYVELVELNL 946

Query: 164  FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
            +  G+ THYN+ +E+C + +C+E+V +S +++ERR + E+FN+ NR RKRG+++VP  FG
Sbjct: 947  YKEGDKTHYNEPIENCNVKKCWEEVIKSSRFQERRAEVEQFNKQNRWRKRGISLVPTTFG 1006

Query: 224  VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
            +AF  + LNQ+GAL+ +Y DG+VL+SH GTEMGQG+HTKMIQVAA  L +P E I I+ET
Sbjct: 1007 IAFTAVHLNQSGALIHVYSDGAVLLSHGGTEMGQGLHTKMIQVAATTLKVPFEKIHISET 1066

Query: 284  ATDKVPNASPTAASVGSDLNGMAIL 308
            +TDKVPN SPTAAS GSDLNGMA+L
Sbjct: 1067 STDKVPNTSPTAASAGSDLNGMAVL 1091

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|17737937|ref|NP_524337.1| rosy [Drosophila melanogaster] gi|32172407|sp|P10351.2|XDH_DROME RecName: Full=Xanthine dehydrogenase; Short=XD; AltName: Full=Protein rosy locus gi|7299713|gb|AAF54895.1| rosy [Drosophila melanogaster] gi|34105727|gb|AAQ62072.1| ROSY [Transformation vector pICon] gi|51092218|gb|AAT94522.1| GH05219p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|20151365|gb|AAM11042.1| GH08847p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|321453842|gb|EFX65041.1| hypothetical protein DAPPUDRAFT_303976 [Daphnia pulex] Back     alignment and taxonomy information
>gi|195329368|ref|XP_002031383.1| GM24078 [Drosophila sechellia] gi|194120326|gb|EDW42369.1| GM24078 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|33391854|gb|AAQ17526.1| xanthine dehydrogenase [Drosophila simulans] Back     alignment and taxonomy information
>gi|8831|emb|CAA68409.1| xanthine dehydrogenase [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|33391858|gb|AAQ17528.1| xanthine dehydrogenase [Drosophila yakuba] Back     alignment and taxonomy information
>gi|383858816|ref|XP_003704895.1| PREDICTED: xanthine dehydrogenase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|195500668|ref|XP_002097471.1| ry [Drosophila yakuba] gi|194183572|gb|EDW97183.1| ry [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
FB|FBgn0003308 1335 ry "rosy" [Drosophila melanoga 0.852 0.198 0.573 2e-78
UNIPROTKB|P91711 1344 Xdh "Xanthine dehydrogenase" [ 0.852 0.197 0.566 9.1e-78
UNIPROTKB|P22811 1343 ry "Xanthine dehydrogenase" [D 0.852 0.197 0.558 5.2e-77
UNIPROTKB|P08793 1353 XDH "Xanthine dehydrogenase" [ 0.852 0.195 0.539 4.7e-75
UNIPROTKB|P47990 1358 XDH "Xanthine dehydrogenase/ox 0.848 0.194 0.553 7.8e-75
UNIPROTKB|F1P4S9 1334 XDH "Xanthine dehydrogenase/ox 0.848 0.197 0.549 3.2e-74
UNIPROTKB|F1P4T0 1340 XDH "Xanthine dehydrogenase/ox 0.848 0.197 0.549 3.3e-74
UNIPROTKB|F1NIY2 1341 XDH "Xanthine dehydrogenase/ox 0.848 0.196 0.549 3.3e-74
UNIPROTKB|F1S3Y7 1361 XDH "Uncharacterized protein" 0.848 0.193 0.549 2.5e-73
UNIPROTKB|J9JHQ2 1333 XDH "Uncharacterized protein" 0.848 0.198 0.530 1.3e-72
FB|FBgn0003308 ry "rosy" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 797 (285.6 bits), Expect = 2.0e-78, P = 2.0e-78
 Identities = 152/265 (57%), Positives = 194/265 (73%)

Query:    44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
             LDRDED+++TG R+PF  KYKVGF+K G +  C++  YNNAG S DLS +V+ RA+FH  
Sbjct:   832 LDRDEDMLITGTRHPFLFKYKVGFTKEGLITACDIECYNNAGWSMDLSFSVLERAMFHFE 891

Query:   104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
             N + +P+VRV  +VCKTNL SNTAFR FG PQ +   E +   VA+ +  D  D  R N 
Sbjct:   892 NCYRIPNVRVGGWVCKTNLPSNTAFRGFGGPQGMYAGEHIIRDVARIVGRDVVDVMRLNF 951

Query:   164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
             + TG+ THY+Q LEH  + RC E   +  +Y E+R++   FNR NR RKRG+A+VP  +G
Sbjct:   952 YKTGDYTHYHQQLEHFPIERCLEDCLKQSRYDEKRQEIARFNRENRWRKRGMAVVPTKYG 1011

Query:   224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
             +AF  + LNQAG+L+ IY DGSVL+SH G E+GQG++TKMIQ AAR L IP+ELI I+ET
Sbjct:  1012 IAFGVMHLNQAGSLINIYGDGSVLLSHGGVEIGQGLNTKMIQCAARALGIPSELIHISET 1071

Query:   284 ATDKVPNASPTAASVGSDLNGMAIL 308
             ATDKVPN SPTAASVGSDLNGMA+L
Sbjct:  1072 ATDKVPNTSPTAASVGSDLNGMAVL 1096
GO:0048072 "compound eye pigmentation" evidence=TAS
GO:0004854 "xanthine dehydrogenase activity" evidence=IEA;NAS;TAS
GO:0005777 "peroxisome" evidence=NAS
GO:0005506 "iron ion binding" evidence=IEA
GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0043546 "molybdopterin cofactor binding" evidence=IEA
GO:0004855 "xanthine oxidase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0006144 "purine nucleobase metabolic process" evidence=IMP
GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IMP
GO:0006650 "glycerophospholipid metabolic process" evidence=IMP
GO:0006568 "tryptophan metabolic process" evidence=IMP
GO:0006525 "arginine metabolic process" evidence=IMP
UNIPROTKB|P91711 Xdh "Xanthine dehydrogenase" [Drosophila subobscura (taxid:7241)] Back     alignment and assigned GO terms
UNIPROTKB|P22811 ry "Xanthine dehydrogenase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|P08793 XDH "Xanthine dehydrogenase" [Calliphora vicina (taxid:7373)] Back     alignment and assigned GO terms
UNIPROTKB|P47990 XDH "Xanthine dehydrogenase/oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4S9 XDH "Xanthine dehydrogenase/oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4T0 XDH "Xanthine dehydrogenase/oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIY2 XDH "Xanthine dehydrogenase/oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S3Y7 XDH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHQ2 XDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GUQ8XDH1_ARATH1, ., 1, 7, ., 1, ., 40.51690.85200.1947yesN/A
P22811XDH_DROPS1, ., 1, 7, ., 1, ., 40.55800.85850.1988yesN/A
Q6AUV1XDH_ORYSJ1, ., 1, 7, ., 1, ., 40.52830.85200.1935yesN/A
Q00519XDH_MOUSE1, ., 1, 7, ., 3, ., 20.52800.85850.2yesN/A
P80457XDH_BOVIN1, ., 1, 7, ., 3, ., 20.50560.85850.2004yesN/A
P10351XDH_DROME1, ., 1, 7, ., 1, ., 40.57300.85850.2yesN/A
P47989XDH_HUMAN1, ., 1, 7, ., 3, ., 20.51680.85850.2003yesN/A
P22985XDH_RAT1, ., 1, 7, ., 3, ., 20.51680.85850.2006yesN/A
P47990XDH_CHICK1, ., 1, 7, ., 3, ., 20.55300.84880.1944yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
PLN02906 1319 PLN02906, PLN02906, xanthine dehydrogenase 1e-117
TIGR02965 758 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, 1e-101
COG4631 781 COG4631, XdhB, Xanthine dehydrogenase, molybdopter 1e-100
pfam02738 543 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding do 2e-98
TIGR02969 1330 TIGR02969, mam_aldehyde_ox, aldehyde oxidase 3e-66
PLN00192 1344 PLN00192, PLN00192, aldehyde oxidase 9e-38
PRK09970 759 PRK09970, PRK09970, xanthine dehydrogenase subunit 1e-22
COG1529 731 COG1529, CoxL, Aerobic-type carbon monoxide dehydr 2e-21
TIGR03196 768 TIGR03196, pucD, xanthine dehydrogenase D subunit 5e-14
TIGR03194 746 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reduc 4e-13
TIGR03311 848 TIGR03311, Se_dep_Molyb_1, selenium-dependent moly 8e-12
PRK09800 956 PRK09800, PRK09800, putative hypoxanthine oxidase; 1e-06
TIGR03313 951 TIGR03313, Se_sel_red_Mo, probable selenate reduct 5e-06
TIGR02416 770 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrog 2e-05
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase Back     alignment and domain information 
 Score =  366 bits (941), Expect = e-117
 Identities = 140/267 (52%), Positives = 187/267 (70%)

Query: 44   LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
            LDRD D+++TGQR+ F GKYKVGF+  GK+   ++ +YNN G S DLS AV+ RA+FH  
Sbjct: 823  LDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSD 882

Query: 104  NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
            N + +P+VR+   VC TN  SNTAFR FG PQ +LI E     +A  L     +    N 
Sbjct: 883  NVYEIPNVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNF 942

Query: 164  FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
               G++THY QVL+HCTL + ++++  S  + +RR++ +EFN  NR +KRGVA+VP  FG
Sbjct: 943  QGEGSVTHYGQVLQHCTLPQLWDELKVSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFG 1002

Query: 224  VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
            ++F T F+NQAGALV +Y DG+VL++H G EMGQG+HTK+ QVAA   NIP   +FI+ET
Sbjct: 1003 ISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISET 1062

Query: 284  ATDKVPNASPTAASVGSDLNGMAILWA 310
            +TDKVPNASPTAAS  SD+ G A+L A
Sbjct: 1063 STDKVPNASPTAASASSDMYGAAVLDA 1089

Length = 1319
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin binding subunit Back     alignment and domain information
>gnl|CDD|226978 COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|217210 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase Back     alignment and domain information
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase Back     alignment and domain information
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase Back     alignment and domain information
>gnl|CDD|236637 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional Back     alignment and domain information
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132240 TIGR03196, pucD, xanthine dehydrogenase D subunit Back     alignment and domain information
>gnl|CDD|132238 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reductase, alpha subunit Back     alignment and domain information
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum hydroxylase 1 Back     alignment and domain information
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional Back     alignment and domain information
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase, molybdenum-binding subunit Back     alignment and domain information
>gnl|CDD|131469 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrogenase, large subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 311
PF02738 547 Ald_Xan_dh_C2: Molybdopterin-binding domain of ald 100.0
TIGR02965 758 xanthine_xdhB xanthine dehydrogenase, molybdopteri 100.0
TIGR03194 746 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha 100.0
PRK09970 759 xanthine dehydrogenase subunit XdhA; Provisional 100.0
PLN02906 1319 xanthine dehydrogenase 100.0
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 100.0
TIGR03196 768 pucD xanthine dehydrogenase D subunit. This gene h 100.0
TIGR02416 770 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large 100.0
PRK09800 956 putative hypoxanthine oxidase; Provisional 100.0
PLN00192 1344 aldehyde oxidase 100.0
TIGR03313 951 Se_sel_red_Mo probable selenate reductase, molybde 100.0
TIGR03311 848 Se_dep_Molyb_1 selenium-dependent molybdenum hydro 100.0
COG4631 781 XdhB Xanthine dehydrogenase, molybdopterin-binding 100.0
KOG0430|consensus 1257 100.0
COG1529 731 CoxL Aerobic-type carbon monoxide dehydrogenase, l 100.0
COG1529731 CoxL Aerobic-type carbon monoxide dehydrogenase, l 98.93
PF0259477 DUF167: Uncharacterised ACR, YggU family COG1872; 92.44
TIGR02965 758 xanthine_xdhB xanthine dehydrogenase, molybdopteri 85.53
PRK0064796 hypothetical protein; Validated 83.87
TIGR02416 770 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large 82.81
PRK09970 759 xanthine dehydrogenase subunit XdhA; Provisional 82.68
PRK0509095 hypothetical protein; Validated 82.24
PF02738 547 Ald_Xan_dh_C2: Molybdopterin-binding domain of ald 81.91
PRK01530105 hypothetical protein; Reviewed 81.7
TIGR03194 746 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha 81.51
PLN00192 1344 aldehyde oxidase 80.09
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-66  Score=518.99  Aligned_cols=289  Identities=28%  Similarity=0.367  Sum_probs=244.9

Q ss_pred             cCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHH
Q psy14054         20 ANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAI   99 (311)
Q Consensus        20 ~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~   99 (311)
                      ..+..++++++|++  +||||||+|||+|+|+.+.+||++.+++|+|+|+||+|+|++++++.|.|+|..++..+.....
T Consensus       107 ~~~~~~~aa~~a~~--~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~  184 (547)
T PF02738_consen  107 DSPIAVLAALAAKK--TGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGGAYASFSPAVAPRAG  184 (547)
T ss_dssp             THHHHHHHHHHHHH--HSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEESS-TTHHHHHHHHH
T ss_pred             cchHHHHHHHHHhc--cCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCCccccccccchhhhh
Confidence            34456778999987  6999999999999999999999999999999999999999999999999999998888877777


Q ss_pred             HhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCC
Q psy14054        100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHC  179 (311)
Q Consensus       100 ~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~  179 (311)
                      ....++|+|||++++++.|+||++|.|+|||||.+|+.||+|++|||||++|||||+|||++|+.++++.+++|..++++
T Consensus       185 ~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~~~~~~~~g~~~~~~  264 (547)
T PF02738_consen  185 AGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLIDPGDRTPTGQPYDSG  264 (547)
T ss_dssp             HTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-GTTEB-TTS-BETS-
T ss_pred             cccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhcccccccccccCcccccC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHH-HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCC
Q psy14054        180 TLGR-CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQG  258 (311)
Q Consensus       180 ~~~~-~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG  258 (311)
                      ++.+ ||+++++.++|.++.++.+.++...+++++|+|+++..++.++.....+.+.+.|+|++||+|+|.++..|+|||
T Consensus       265 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~DG~v~v~~~~~e~GqG  344 (547)
T PF02738_consen  265 DYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNPDGSVTVYTGGVEMGQG  344 (547)
T ss_dssp             -HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-TTS-EEEEES--BSSSS
T ss_pred             cHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEeCCCEEEEEecccCCcc
Confidence            9998 999999999999998777766666678899999999888877654434678999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054        259 IHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA  310 (311)
Q Consensus       259 ~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A  310 (311)
                      ++|+++||+||+||||+|+|+|..+||+.+|++++|+|||++++.|.|+++|
T Consensus       345 ~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~A  396 (547)
T PF02738_consen  345 SRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKA  396 (547)
T ss_dssp             HHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987

2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit Back     alignment and domain information
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit Back     alignment and domain information
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>TIGR03196 pucD xanthine dehydrogenase D subunit Back     alignment and domain information
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit Back     alignment and domain information
>PRK09800 putative hypoxanthine oxidase; Provisional Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit Back     alignment and domain information
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1 Back     alignment and domain information
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0430|consensus Back     alignment and domain information
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion] Back     alignment and domain information
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion] Back     alignment and domain information
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function Back     alignment and domain information
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit Back     alignment and domain information
>PRK00647 hypothetical protein; Validated Back     alignment and domain information
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit Back     alignment and domain information
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional Back     alignment and domain information
>PRK05090 hypothetical protein; Validated Back     alignment and domain information
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1 Back     alignment and domain information
>PRK01530 hypothetical protein; Reviewed Back     alignment and domain information
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
1wyg_A 1331 Crystal Structure Of A Rat Xanthine Dehydrogenase T 6e-81
2e1q_A 1333 Crystal Structure Of Human Xanthine Oxidoreductase 5e-80
2ckj_A 1333 Human Milk Xanthine Oxidoreductase Length = 1333 5e-80
2e3t_A 1331 Crystal Structure Of Rat Xanthine Oxidoreductase Mu 9e-80
3an1_A 1331 Crystal Structure Of Rat D428a Mutant, Urate Bound 1e-79
3una_A 1332 Crystal Structure Of Bovine Milk Xanthine Dehydroge 4e-78
1fo4_A 1332 Crystal Structure Of Xanthine Dehydrogenase Isolate 4e-78
3sr6_C 745 Crystal Structure Of Reduced Bovine Xanthine Oxidas 4e-78
1n5x_A 1331 Xanthine Dehydrogenase From Bovine Milk With Inhibi 5e-78
3nrz_C 756 Crystal Structure Of Bovine Xanthine Oxidase In Com 5e-78
3etr_C 755 Crystal Structure Of Xanthine Oxidase In Complex Wi 5e-78
1fiq_C 763 Crystal Structure Of Xanthine Oxidase From Bovine M 6e-78
3eub_C 762 Crystal Structure Of Desulfo-Xanthine Oxidase With 6e-78
3zyv_A 1335 Crystal Structure Of The Mouse Liver Aldehyde Oxyda 8e-60
2w55_B 777 Crystal Structure Of Xanthine Dehydrogenase (E232q 1e-56
1jro_B 777 Crystal Structure Of Xanthine Dehydrogenase From Rh 1e-56
1dgj_A 907 Crystal Structure Of The Aldehyde Oxidoreductase Fr 2e-16
3hrd_A425 Crystal Structure Of Nicotinate Dehydrogenase Lengt 9e-16
1sij_A 907 Crystal Structure Of The Aldehyde Dehydrogenase (A. 8e-13
1rm6_A 769 Structure Of 4-Hydroxybenzoyl-Coa Reductase From Th 1e-06
3hrd_B 330 Crystal Structure Of Nicotinate Dehydrogenase Lengt 1e-05
1zxi_B 809 Reconstituted Co Dehydrogenase From Oligotropha Car 1e-04
1n5w_B 809 Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Co 1e-04
1t3q_B 788 Crystal Structure Of Quinoline 2-Oxidoreductase Fro 7e-04
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple Mutant (C535a, C992r And C1324s) Length = 1331 Back     alignment and structure 
Iteration: 1

 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 139/267 (52%), Positives = 187/267 (70%)
Query: 44   LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
            LDRDED+++TG R+PF  KYKVGF K+G +   EV  ++N G + DLS ++M RA+FH  
Sbjct: 827  LDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMD 886
Query: 104  NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
            N++ +P++R    +CKTNL SNTAFR FG PQ +LIAE     VA    L   +  R N+
Sbjct: 887  NAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNM 946
Query: 164  FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
            +  G+LTH+NQ LE  TL RC+++   S +Y  R+++ E+FNR NR +KRG+ I+P  FG
Sbjct: 947  YKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARKREVEKFNRENRWKKRGLCIIPTKFG 1006
Query: 224  VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
            ++F   FLNQ GALV +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP   I I+ET
Sbjct: 1007 ISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISET 1066
Query: 284  ATDKVPNASPTAASVGSDLNGMAILWA 310
            +T+ VPN SPTAAS  +DLNG  +  A
Sbjct: 1067 STNTVPNTSPTAASASADLNGQGVYEA 1093
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant, Glu803val Length = 1333 Back     alignment and structure
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase Length = 1333 Back     alignment and structure
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant (W335a And F336l) Length = 1331 Back     alignment and structure
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form Length = 1331 Back     alignment and structure
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With Nad Bound Length = 1332 Back     alignment and structure
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From Bovine Milk Length = 1332 Back     alignment and structure
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In Complex With Arsenite Length = 745 Back     alignment and structure
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei- 6720 Bound Length = 1331 Back     alignment and structure
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With Hypoxanthine Length = 756 Back     alignment and structure
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With Lumazine Length = 755 Back     alignment and structure
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk Length = 763 Back     alignment and structure
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine Length = 762 Back     alignment and structure
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3 (Maox3) Length = 1335 Back     alignment and structure
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant) From Rhodobacter Capsulatus In Complex With Hypoxanthine Length = 777 Back     alignment and structure
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter Capsulatus Length = 777 Back     alignment and structure
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From Desulfovibrio Desulfuricans Atcc 27774 Length = 907 Back     alignment and structure
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase Length = 425 Back     alignment and structure
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A. Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To [aso3]- Length = 907 Back     alignment and structure
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica Length = 769 Back     alignment and structure
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase Length = 330 Back     alignment and structure
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha Carboxidovorans Length = 809 Back     alignment and structure
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form Length = 809 Back     alignment and structure
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From Pseudomonas Putida 86 Length = 788 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
3nvz_C 755 Xanthine dehydrogenase/oxidase; hydroxylase, homod 1e-125
2w3s_B 777 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 1e-119
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 1e-112
1vlb_A 907 Aldehyde oxidoreductase; iron-sulphur cluster; HET 6e-96
1dgj_A 907 Aldehyde oxidoreductase; beta half-barrel, four-he 7e-94
3hrd_A425 Nicotinate dehydrogenase large molybdopterin subun 1e-44
1rm6_A 769 4-hydroxybenzoyl-COA reductase alpha subunit; xant 1e-37
1t3q_B 788 Quinoline 2-oxidoreductase large subunit; QOR, mol 2e-34
3hrd_B 330 Nicotinate dehydrogenase medium molybdopterin subu 8e-31
1n62_B 809 Carbon monoxide dehydrogenase large chain; CODH, m 3e-30
1ffv_B 803 CUTL, molybdoprotein of carbon monoxide dehydrogen 1e-28
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C* Length = 755 Back     alignment and structure
 Score =  373 bits (961), Expect = e-125
 Identities = 135/268 (50%), Positives = 190/268 (70%)

Query: 43  YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHC 102
            LDR+ED+++TG R+PF  +YKVGF K+G +   EV  Y+NAG S DLS ++M RA+FH 
Sbjct: 256 MLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHM 315

Query: 103 TNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162
            N + +P++R    +CKTNLSSNTAFR FG PQ+L IAE     VA    L   +    N
Sbjct: 316 DNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKN 375

Query: 163 LFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
           ++  G+LTH+NQ LE  ++ RC+++  +S +Y  R+ + ++FN+ N  +KRG+ I+P  F
Sbjct: 376 MYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKF 435

Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
           G++F   FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP   I+I+E
Sbjct: 436 GISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495

Query: 283 TATDKVPNASPTAASVGSDLNGMAILWA 310
           T+T+ VPN+SPTAASV +D+ G A+  A
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEA 523
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* Length = 777 Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Length = 1332 Back     alignment and structure
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A* Length = 907 Back     alignment and structure
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Length = 907 Back     alignment and structure
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Length = 425 Back     alignment and structure
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A* Length = 769 Back     alignment and structure
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1 Length = 788 Back     alignment and structure
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Length = 330 Back     alignment and structure
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B* Length = 809 Back     alignment and structure
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B* Length = 803 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
3nvz_C 755 Xanthine dehydrogenase/oxidase; hydroxylase, homod 100.0
2w3s_B 777 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 100.0
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 100.0
1rm6_A 769 4-hydroxybenzoyl-COA reductase alpha subunit; xant 100.0
1t3q_B 788 Quinoline 2-oxidoreductase large subunit; QOR, mol 100.0
1ffv_B 803 CUTL, molybdoprotein of carbon monoxide dehydrogen 100.0
1vlb_A 907 Aldehyde oxidoreductase; iron-sulphur cluster; HET 100.0
1dgj_A 907 Aldehyde oxidoreductase; beta half-barrel, four-he 100.0
1n62_B 809 Carbon monoxide dehydrogenase large chain; CODH, m 100.0
3zyv_A 1335 AOH1; oxidoreductase, molybdenum cofactor; HET: MT 100.0
3hrd_A425 Nicotinate dehydrogenase large molybdopterin subun 100.0
3hrd_B 330 Nicotinate dehydrogenase medium molybdopterin subu 99.86
3hrd_A 425 Nicotinate dehydrogenase large molybdopterin subun 91.0
3hrd_B330 Nicotinate dehydrogenase medium molybdopterin subu 89.41
3nvz_C 755 Xanthine dehydrogenase/oxidase; hydroxylase, homod 86.61
1rm6_A 769 4-hydroxybenzoyl-COA reductase alpha subunit; xant 86.11
1t3q_B 788 Quinoline 2-oxidoreductase large subunit; QOR, mol 85.93
2w3s_B 777 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 85.54
1vlb_A 907 Aldehyde oxidoreductase; iron-sulphur cluster; HET 84.73
1ffv_B 803 CUTL, molybdoprotein of carbon monoxide dehydrogen 84.63
1n62_B 809 Carbon monoxide dehydrogenase large chain; CODH, m 83.52
1dgj_A 907 Aldehyde oxidoreductase; beta half-barrel, four-he 82.68
1n91_A108 ORF, hypothetical protein; alpha+beta, northeast s 81.92
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 80.72
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C* Back     alignment and structure
Probab=100.00  E-value=1.4e-68  Score=546.41  Aligned_cols=285  Identities=47%  Similarity=0.769  Sum_probs=269.4

Q ss_pred             cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054         24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT  103 (311)
Q Consensus        24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~  103 (311)
                      .++++++|++  +||||||+|||+|+|+.+++||++.+++|+|+|+||+|+||+++++.|+|+|.+++..+......++.
T Consensus       239 ~~~aa~aA~~--~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~  316 (755)
T 3nvz_C          239 SVAVALAAYK--TGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD  316 (755)
T ss_dssp             HHHHHHHHHH--HSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTCCEEEEEEEEEEEEESSCTTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH--hCCCEEEEecHHHHHhhcCCCCceEEEEEEEECCCCcEEEEEEEEEEccCcCcCccHHHHHHHHHhcC
Confidence            4567888887  59999999999999999999999999999999999999999999999999999887777777777889


Q ss_pred             CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHH
Q psy14054        104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGR  183 (311)
Q Consensus       104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~  183 (311)
                      ++|+|||++++.+.|+||+||++||||||.+|++|++|++|||||++|||||+|||++|++++|+.+++|++++++.+.+
T Consensus       317 ~~Y~ipn~~~~~~~v~Tn~~~~~a~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~~~~g~~~~s~~~~~  396 (755)
T 3nvz_C          317 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPR  396 (755)
T ss_dssp             TTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCBCTTCCBCTTCCHHH
T ss_pred             CCccCCcEEEEEEEEeCCCCCCCcccCCChHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCCCcCCCCccccCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHHH
Q psy14054        184 CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM  263 (311)
Q Consensus       184 ~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~  263 (311)
                      ||++++++++|++++++.+.++.+++|++||+|+++..++.++.....+++.+.|+|++||+|+|.+|++|||||++|++
T Consensus       397 ~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGig~~~~~~g~g~~~~~~~~~~a~v~l~~DG~v~v~~g~~e~GQG~~T~~  476 (755)
T 3nvz_C          397 CWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKM  476 (755)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGGCEEEEEEEECTTSCEEEEESCCCSSSCHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhccCCccceeEEEEEEEecccccCCCCCcceEEEEEecCCeEEEEECCCCCCCCHHHHH
Confidence            99999999999999888888887788999999999988888875434467899999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054        264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA  310 (311)
Q Consensus       264 ~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A  310 (311)
                      +||+||+||||+|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus       477 aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~A  523 (755)
T 3nvz_C          477 VQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEA  523 (755)
T ss_dssp             HHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A* Back     alignment and structure
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1 Back     alignment and structure
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B* Back     alignment and structure
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A* Back     alignment and structure
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Back     alignment and structure
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B* Back     alignment and structure
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus} Back     alignment and structure
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C* Back     alignment and structure
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A* Back     alignment and structure
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1 Back     alignment and structure
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* Back     alignment and structure
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A* Back     alignment and structure
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B* Back     alignment and structure
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B* Back     alignment and structure
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Back     alignment and structure
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 311
d1jrob2 654 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain 2e-35
d1v97a5 638 d.133.1.1 (A:695-1332) Xanthine oxidase, C-termina 2e-30
d1t3qb2 621 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase l 3e-17
d1rm6a2 636 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reducta 8e-15
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]} Length = 654 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Molybdenum cofactor-binding domain
superfamily: Molybdenum cofactor-binding domain
family: Molybdenum cofactor-binding domain
domain: Xanthine dehydrogenase chain B, C-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

 Score =  132 bits (333), Expect = 2e-35
 Identities = 116/282 (41%), Positives = 154/282 (54%), Gaps = 20/282 (7%)

Query: 44  LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
            DRD+D+V+TG+R+ F  +Y++G   SGKL   +       G S DLS  V  RA+ H  
Sbjct: 134 YDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHAD 193

Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
            S++VP +R+ +   +TN  SNTAFR FG PQ  L  E    H+A+ +  D A+    N 
Sbjct: 194 GSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNF 253

Query: 164 --------------------FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEE 203
                                     THY Q +  C LG    ++ +S  +  RR +   
Sbjct: 254 YDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAA 313

Query: 204 FNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM 263
           +N  NR   RG+A+ PV FG++F    LNQAGALV IY DGSV ++H GTEMGQG+H KM
Sbjct: 314 WNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKM 373

Query: 264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGM 305
           +QVAA  L I    + I  T T KVPN S TAAS G+D+NGM
Sbjct: 374 VQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGM 415
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 638 Back     information, alignment and structure
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]} Length = 621 Back     information, alignment and structure
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} Length = 636 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
d1jrob2 654 Xanthine dehydrogenase chain B, C-terminal domain 100.0
d1v97a5 638 Xanthine oxidase, C-terminal domain {Cow (Bos taur 100.0
d1dgja4 596 Aldehyde oxidoreductase {Desulfovibrio desulfurica 100.0
d1vlba4 597 Aldehyde oxidoreductase {Desulfovibrio gigas [TaxI 100.0
d1rm6a2 636 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, 100.0
d1t3qb2 621 Quinoline 2-oxidoreductase large subunit QorL {Pse 100.0
d1n62b2 663 Carbon monoxide (CO) dehydrogenase molybdoprotein 100.0
d1ffvb2 657 Carbon monoxide (CO) dehydrogenase molybdoprotein 100.0
d1v97a5 638 Xanthine oxidase, C-terminal domain {Cow (Bos taur 90.16
d1vlba4 597 Aldehyde oxidoreductase {Desulfovibrio gigas [TaxI 89.71
d1ffvb2 657 Carbon monoxide (CO) dehydrogenase molybdoprotein 89.49
d1rm6a2 636 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, 89.32
d1t3qb2 621 Quinoline 2-oxidoreductase large subunit QorL {Pse 87.2
d1n62b2 663 Carbon monoxide (CO) dehydrogenase molybdoprotein 85.67
d1jrob2 654 Xanthine dehydrogenase chain B, C-terminal domain 84.93
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Molybdenum cofactor-binding domain
superfamily: Molybdenum cofactor-binding domain
family: Molybdenum cofactor-binding domain
domain: Xanthine dehydrogenase chain B, C-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=1e-63  Score=503.34  Aligned_cols=282  Identities=42%  Similarity=0.615  Sum_probs=259.3

Q ss_pred             hhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcCCCC
Q psy14054         27 NDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSF  106 (311)
Q Consensus        27 aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~~~Y  106 (311)
                      ++++|++  +||||||+|||+|+|+.+.+||++.+++|+++|+||+|++++++++.|.|+|...+..+.........++|
T Consensus       119 aa~~a~~--~grPVk~~~sR~e~~~~~~~r~~~~~~~~~~~~~dG~i~a~~~~~~~~~Ga~~~~~~~~~~~~~~~~~g~Y  196 (654)
T d1jrob2         119 CAVAARA--TGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSY  196 (654)
T ss_dssp             HHHHHHH--HSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECSSSCEEEEEEEEEEEEESSCTTHHHHHHHHHHHTTTTB
T ss_pred             HHHHHHH--HCCCEEEEEcchhhccccCcccCEEEEEEEEEcCCCcEEEEEeeeeecccccccccCcccccchhcccccc
Confidence            4566766  69999999999999999999999999999999999999999999999999999888777777777889999


Q ss_pred             ccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCc-----------------
Q psy14054        107 YVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNL-----------------  169 (311)
Q Consensus       107 ~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~-----------------  169 (311)
                      +|||++++.+.|+||++|+|+|||+|.+|+.|++|++|||+|++|||||+|||++|++++++.                 
T Consensus       197 ~~p~~~~~~~~v~tn~~~~ga~Rg~G~~~~~fa~E~~~De~A~~lg~DP~e~R~~N~i~~~~~~~~~~~~~~~~~~~~~~  276 (654)
T d1jrob2         197 FVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKK  276 (654)
T ss_dssp             CCSEEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHBCCCC-----------------CC
T ss_pred             eeeeeeeeeeeeeecccccccccccCccccceeeecHHHHHHHHcCCCHHHHHHHhccCcccccccccCCCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999987653                 


Q ss_pred             ---ccccceecCCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeE
Q psy14054        170 ---THYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSV  246 (311)
Q Consensus       170 ---~~~g~~~~~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v  246 (311)
                         +++|++++++.+.+||+++++.++|..++++....+..++++++|+|+++..+|.++.......+.+.|+|++||+|
T Consensus       277 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~g~G~a~~~~~~g~~~~~~~~~~~~a~v~l~~DG~v  356 (654)
T d1jrob2         277 TQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSV  356 (654)
T ss_dssp             CCBCTTCCBCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHTCSSEEEEEEEEEEEEECSCSSGGGCEEEEEEEECTTSCE
T ss_pred             CcccccCcchhcchhHHHHHHHHHhcCHHHhhhhhhhhcccCCccceEEEEeEEeEEEeeccCcCCccceEEEEcCCCCE
Confidence               45678889999999999999999999988887777777777888888888777777654445678899999999999


Q ss_pred             EEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054        247 LISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA  310 (311)
Q Consensus       247 ~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A  310 (311)
                      +|.++++|+|||++|+++||+||+|||++|+|+|..+||+.+|++.+|+|||++++.|.||++|
T Consensus       357 ~v~~g~~d~GQG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~A  420 (654)
T d1jrob2         357 ALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDA  420 (654)
T ss_dssp             EEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTTCHHHHHHHHHHHH
T ss_pred             EEEeCCcCCCCcHHHHHHHHHHHHhCCcceeeEEEeccCCCCCccccccccccceecchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999886
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure