Psyllid ID: psy14060

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
DLEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccEEcEEEccccEEEEEEEccccccEEEEEEccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEcccccccccEEEEccccEEEEccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEccccccccccccEEEEEcccEEEcccccEEEEEEEEEEcccEEEEEEccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccEEEEEEEcccccccEcccccEEccccccccccccEEEccccEEEEcccEEEEEEEEccccccEEEEcccEEEEEcccEEEEEEEEcccccccEEEEEEEEcccccEcccccccEEEEEEEccccEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEcccEEEEEEEEccHccccEEEEEEEEccccEEEEEEEEEEcccccccccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccc
Coil and Loop (DISEMBL)
dleaakkepelqpwqkknilksrtassdrsgvsteetkiidgrkvsvpepsasgvhgkeihtaksqqvqkekkgDKEIVRKITATETTEMEHKGKIQERvvdaseldddgyyaitERKYYalsdlseqkpakppvftkkiqpcrafeqDQARFevefdgdplptikwfredfpitsspdfqihtfsTKSILIMRQVFMEDSGVFAVIAenrggkakcsANLVVEEkrqggrggvvppsfLTTISSAVINVGQlarfdakisatkpldvYWLKVSslsdvkrgv
Flexible Loop (DISEMBL)
dleaakkepelqpwqkknilksrtassdrsgvsteetkiidgrkvsvpepsasgvhgkeihtaksqqvqkekkgdkeiVRKItatettemehkgkiqervvdaselddDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEnrggkakcsaNLVVEekrqggrggvvPPSFLTTISSAVINVGQLARFDAkisatkpldvywlkvsslsdvkrgv
Low Complexity Region (SEG)
DLEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV
Disordered region (IsUnstruct)
********************************************************************************************************ELDDDGYYAITERKYYALSD***********FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVS*********
Disordered Region (DISOPRED)
***********************************ETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY***********AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ****GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK*SS********
Disordered Region (DISEMBL)
**********LQPWQKKNIL****************TKIIDGRKVSVPEPSASGVHGKEIHT**************EIVRKITATE********KIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSS********
Disordered Region (DISPRO)
*****KKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DLEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9I7U4	18141	Titin OS=Drosophila melan	yes	N/A	0.717	0.011	0.637	2e-82
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.593	0.004	0.277	3e-14
A2ASS6	35213	Titin OS=Mus musculus GN=	yes	N/A	0.646	0.005	0.266	3e-13
O01761	8081	Muscle M-line assembly pr	no	N/A	0.469	0.016	0.295	8e-12
Q15772	3267	Striated muscle preferent	no	N/A	0.512	0.044	0.283	4e-11
Q15746	1914	Myosin light chain kinase	no	N/A	0.487	0.072	0.268	8e-11
Q63638	3259	Striated muscle-specific	no	N/A	0.512	0.044	0.270	2e-10
P56276	154	Telokin OS=Meleagris gall	no	N/A	0.363	0.668	0.346	3e-10
Q62407	3262	Striated muscle-specific	no	N/A	0.512	0.044	0.263	4e-10
Q696W0	2995	Striated muscle preferent	no	N/A	0.321	0.030	0.336	4e-10

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/226 (63%), Positives = 170/226 (75%), Gaps = 23/226 (10%)

Query: 47   VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASEL 106
            + +PS S VHG+E+H  K QQVQKE +GD EI RKITATETTE+EHKG IQERVV     
Sbjct: 4330 IAQPSESSVHGREVHMNKQQQVQKEIQGDLEITRKITATETTEVEHKGTIQERVVQGP-- 4387

Query: 107  DDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK 166
                                  KPAK PVFTKKIQPCR FE +QA+FEVEF+G+P PT+K
Sbjct: 4388 ---------------------VKPAKAPVFTKKIQPCRVFENEQAKFEVEFEGEPNPTVK 4426

Query: 167  WFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            W+RE FPI +SPD QIHTFS KSILI+RQVF+EDS VF+ +AENRGG AKCSANLVVEE+
Sbjct: 4427 WYRESFPIQNSPDLQIHTFSGKSILIIRQVFVEDSAVFSCVAENRGGTAKCSANLVVEER 4486

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            R+ G+GG+ PPSF+TTI S  +  GQLARFDAK++ T+PLDVYWLK
Sbjct: 4487 RRAGKGGIQPPSFVTTIQSTTVATGQLARFDAKVTGTRPLDVYWLK 4532

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Drosophila melanogaster (taxid: 7227)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 12/180 (6%)

Query: 95   KIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAK-PPVFTKKIQPCR-AFEQDQAR 152
            KI    +  ++L D G Y  T       S  S     + PP F KK+ P       + AR
Sbjct: 4624 KIATLEIPLAKLKDSGTYVCTASNEAGSSSCSATVTVREPPSFVKKVDPSYLMLPGESAR 4683

Query: 153  FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
               +  G P+  + WF+ +  ++ S   +++  ++++IL +  V +EDSG ++  A N  
Sbjct: 4684 LHCKLKGSPVIQVTWFKNNKELSESNTVRMYFVNSEAILDITDVKVEDSGSYSCEAVNDV 4743

Query: 213  GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            G   CS  +V++E          PPSF+ T+  A I  G  A    ++S T P ++ W K
Sbjct: 4744 GSDSCSTEIVIKE----------PPSFIKTLEPADIVRGTNALLQCEVSGTGPFEISWFK 4793

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 80   RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAK-PPVFTK 138
            +K+ A +  ++  + KI    +  ++L D G Y  T       S  S     + PP F K
Sbjct: 4570 QKLPAGKDYKIYFEDKIASLEIPLAKLKDSGTYTCTASNEAGSSSSSAAVAVREPPSFVK 4629

Query: 139  KIQPCR-AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
            K+ P       + AR   +  G P+  + WF+ +  ++ S   ++   ++++IL +  V 
Sbjct: 4630 KVDPSYLMLPGESARLHCKLKGSPVIQVTWFKNNKELSESNTVRMSFVNSEAILDITDVK 4689

Query: 198  MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFD 257
            ++DSG ++  A N  G   CS  +V++E          PPSF+ T+  A I  G  A   
Sbjct: 4690 VDDSGTYSCEATNDVGSDSCSTEVVIKE----------PPSFIKTLEPADIVRGANALLQ 4739

Query: 258  AKISATKPLDVYWLK 272
             +I+ T P +V W K
Sbjct: 4740 CEIAGTGPFEVNWFK 4754

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 9/142 (6%)

Query: 133  PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT--SSPDFQIHTFSTKSI 190
            PP FT+K++P    EQ+    +V   G P+P ++WF++D PI   +S  F     S    
Sbjct: 3481 PPEFTQKLRPLEVREQETLDLKVTVIGTPVPNVEWFKDDKPINIDNSHIFAKDEGSGHHT 3540

Query: 191  LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
            L ++Q   ED GV+   A N  G+AK +AN+ V+E+ +        P F+  +    +  
Sbjct: 3541 LTIKQARGEDVGVYTCKATNEAGEAKTTANMAVQEEIEA-------PLFVQGLKPYEVEQ 3593

Query: 251  GQLARFDAKISATKPLDVYWLK 272
            G+ A    ++      +V W K
Sbjct: 3594 GKPAELVVRVEGKPEPEVKWFK 3615

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 88   TEMEHKGKIQERVVDASELDDDGYYAI---TERKYYALSDLSEQKPAKPPVFTKKIQPCR 144
             +M   G+  + ++ +   DD G Y     T +     S     +P+  P+FT+ ++   
Sbjct: 1015 CKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTAKDELTCSARLTVRPSLAPLFTRLLEDVE 1074

Query: 145  AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF 204
              E   ARF+ +  G P P + W     P+  S + ++        L +  V  ED G++
Sbjct: 1075 VLEGRAARFDCKISGTPPPVVTWTHFGCPMEESENLRLRQDGGLHSLHIAHVGSEDEGLY 1134

Query: 205  AVIAENRGGKAKCSANLVVEEKRQGGRG 232
            AV A N  G+A CSA L VEE R    G
Sbjct: 1135 AVSAVNTHGQAHCSAQLYVEEPRTAASG 1162

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q15746|MYLK_HUMAN Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 130 PAKP--PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
           P+KP  P+F + +   +  +  Q    V+  G+P P + W      I  S DF      T
Sbjct: 617 PSKPTAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHFEQRGT 676

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
           +  L +++VF ED+G +   A N  G+ +  A L V+E   G +     P F++   S  
Sbjct: 677 QHSLCIQEVFPEDTGTYTCEAWNSAGEVRTQAVLTVQEPHDGTQ-----PWFISKPRSVT 731

Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
            ++GQ       I+      V+WL+
Sbjct: 732 ASLGQSVLISCAIAGDPFPTVHWLR 756

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Responsible for high proliferative ability of breast cancer cells through anti-apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 88   TEMEHKGKIQERVVDASELDDDGYYAI---TERKYYALSDLSEQKPAKPPVFTKKIQPCR 144
             +M   G+  + ++ +   DD G Y     T +     S     +P+  P+FT+ ++   
Sbjct: 1020 CKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTVKDELTCSARLTVRPSLAPLFTRLLEDVE 1079

Query: 145  AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF 204
              E   AR + +  G P P++ W     P+  S + ++        L + +V  ED G++
Sbjct: 1080 VLEGRAARLDCKISGTPPPSVTWTHFGHPVNESENLRLRQDGGLHSLHIARVGSEDEGLY 1139

Query: 205  AVIAENRGGKAKCSANLVVEEKRQGGRG 232
             V A N  G+A CSA L VEE R    G
Sbjct: 1140 EVSATNTHGQAHCSAQLYVEEPRTAASG 1167

Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P56276|MYLK_MELGA Telokin OS=Meleagris gallopavo PE=1 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
           L +++E+KP   P FTK I      E   ARF+ + +G P P + WF++D P+  S  FQ
Sbjct: 30  LEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89

Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           I +       L + +V  +D   +   A N  G+A C+A L+VE
Sbjct: 90  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

Corresponds to the C-terminus of smooth muscle myosin light chain kinase.

Meleagris gallopavo (taxid: 9103)

>sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-protein kinase OS=Mus musculus GN=Speg PE=1 SV=2

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 3/148 (2%)

Query: 88   TEMEHKGKIQERVVDASELDDDGYYAI---TERKYYALSDLSEQKPAKPPVFTKKIQPCR 144
             +M   G+  + ++ +   DD G Y     T +     S     +P+  P+FT+ ++   
Sbjct: 1020 CKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTAKDELTCSARLTVRPSLAPLFTRLLEDVE 1079

Query: 145  AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF 204
              E   AR + +  G P P++ W     P+    + ++        L + +V  ED G++
Sbjct: 1080 VLEGRAARLDCKISGTPPPSVTWTHFGHPVNEGDNLRLRQDGGLHSLHIARVGSEDEGLY 1139

Query: 205  AVIAENRGGKAKCSANLVVEEKRQGGRG 232
             V A N  G+A CSA L VEE R    G
Sbjct: 1140 EVSATNTHGQAHCSAQLYVEEPRTAASG 1167

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q696W0|SPEG_DANRE Striated muscle preferentially expressed protein kinase OS=Danio rerio GN=speg PE=2 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
           P+K P+FT+K++   A E   A+F+ +  G P P + W   + P+  S +  I   +   
Sbjct: 710 PSKEPLFTRKLEVLEAIEGRSAQFDCKVSGCPPPEVTWTHCEKPLVESDNIHILNVNGHH 769

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
            L++  V  E  G++  IA+N  GKA  SA L V+E R
Sbjct: 770 SLLITHVNKESEGLYTAIAQNVHGKAASSAELYVQEPR 807

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
328711567	6663	PREDICTED: titin-like [Acyrthosiphon pis	0.816	0.034	0.649	2e-90
380018369	16174	PREDICTED: LOW QUALITY PROTEIN: titin-li	0.713	0.012	0.716	4e-90
328784395	19028	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.713	0.010	0.712	2e-89
332016542	17174	Titin [Acromyrmex echinatior]	0.742	0.012	0.690	7e-89
307204650	14447	Titin [Harpegnathos saltator]	0.713	0.013	0.712	4e-88
307172723	11066	Titin [Camponotus floridanus]	0.713	0.018	0.707	1e-86
242022532	4792	conserved hypothetical protein [Pediculu	0.858	0.050	0.613	1e-84
158285443	15844	AGAP007563-PA [Anopheles gambiae str. PE	0.763	0.013	0.625	1e-84
322798410	2670	hypothetical protein SINV_16483 [Solenop	0.713	0.075	0.699	3e-84
158285447	4897	AGAP007563-PC [Anopheles gambiae str. PE	0.763	0.044	0.625	1e-83

>gi|328711567|ref|XP_003244574.1| PREDICTED: titin-like [Acyrthosiphon pisum]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/271 (64%), Positives = 194/271 (71%), Gaps = 40/271 (14%)

Query: 2    LEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIH 61
            LE  KKE EL PWQK  +LKSR   S +                 +P+PS S VHGKEIH
Sbjct: 4313 LEKDKKE-ELMPWQKTKLLKSRGDQSQQI----------------IPDPSESSVHGKEIH 4355

Query: 62   TAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121
             AK QQ QKE +GDKEI RKITATETTE+EH  K QERVV                    
Sbjct: 4356 VAKQQQTQKEIQGDKEIRRKITATETTEVEHTRKNQERVVQG------------------ 4397

Query: 122  LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
                 + +P+KPPVFT KIQPCRAFEQDQARFEVEFDG+PLPTIKW+REDF I +SPDFQ
Sbjct: 4398 -----KVEPSKPPVFTTKIQPCRAFEQDQARFEVEFDGEPLPTIKWYREDFLIQNSPDFQ 4452

Query: 182  IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
            IHTFSTKSILI+RQVFMEDSGVFAVIAENRGGKAKCSANL+VEE++Q GR G  PPSFLT
Sbjct: 4453 IHTFSTKSILIIRQVFMEDSGVFAVIAENRGGKAKCSANLLVEERKQVGRKGPGPPSFLT 4512

Query: 242  TISSAVINVGQLARFDAKISATKPLDVYWLK 272
            T+  AV+  GQL RFD KISA KPLDVYWLK
Sbjct: 4513 TMQGAVVKAGQLVRFDVKISANKPLDVYWLK 4543

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018369|ref|XP_003693102.1| PREDICTED: LOW QUALITY PROTEIN: titin-like [Apis florea]

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 162/226 (71%), Positives = 180/226 (79%), Gaps = 24/226 (10%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            PEPS S VHG+E+H AK +Q+QKE KGD EI RKITATETTE+EHK K QER+V      
Sbjct: 4347 PEPSESTVHGREVHVAKQKQIQKEVKGDLEITRKITATETTEVEHKAKTQERIVQGP--- 4403

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                                 KPAKPPVFTKKIQPCRAFEQ+QARFEVEFDGDPLPTIKW
Sbjct: 4404 --------------------TKPAKPPVFTKKIQPCRAFEQEQARFEVEFDGDPLPTIKW 4443

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-K 226
            +REDFPI +SPD QI+TFSTKS+LI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE +
Sbjct: 4444 YREDFPIQNSPDLQIYTFSTKSVLIIRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 4503

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            RQ GRGGVVPPSFL+TI S  +  GQLARFDAK++ TKPLDVYWLK
Sbjct: 4504 RQPGRGGVVPPSFLSTIQSTSVTTGQLARFDAKVTGTKPLDVYWLK 4549

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784395|ref|XP_623653.3| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC551259 [Apis mellifera]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 180/226 (79%), Gaps = 24/226 (10%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            PEPS S VHG+E+H AK +Q+QKE KGD EI RKITATETTE+EHK K QER+V      
Sbjct: 8576 PEPSESTVHGREVHVAKQKQIQKEVKGDLEITRKITATETTEVEHKAKTQERIVQGP--- 8632

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                                 KPAKPPVFTKKIQPCRAFEQ+QARFEVEFDGDPLP+IKW
Sbjct: 8633 --------------------TKPAKPPVFTKKIQPCRAFEQEQARFEVEFDGDPLPSIKW 8672

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-K 226
            +REDFPI +SPD QI+TFSTKS+LI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE +
Sbjct: 8673 YREDFPIQNSPDLQIYTFSTKSVLIIRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 8732

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            RQ GRGGVVPPSFL+TI S  +  GQLARFDAK++ TKPLDVYWLK
Sbjct: 8733 RQPGRGGVVPPSFLSTIQSTSVTTGQLARFDAKVTGTKPLDVYWLK 8778

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016542|gb|EGI57423.1| Titin [Acromyrmex echinatior]

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 185/236 (78%), Gaps = 26/236 (11%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            PEPS S VHG+E+H AK +Q QKE KGD EI RKITATETTE+EHK K QERVV      
Sbjct: 4375 PEPSESTVHGREVHVAKQKQTQKEVKGDVEITRKITATETTEVEHKAKTQERVVQG---- 4430

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                               + KPAKPP+FTKKIQPCRAFEQ+QA+FEVEFDGDPLPTIKW
Sbjct: 4431 -------------------QVKPAKPPIFTKKIQPCRAFEQEQAKFEVEFDGDPLPTIKW 4471

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-K 226
            +REDFPI +S D QI+TFSTKS+LI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE +
Sbjct: 4472 YREDFPIQNSADLQIYTFSTKSVLIIRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 4531

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSS--LSDVK 280
            RQ GRGG VPPSFL+TI SA +  GQLARFDAKI+ TKPLDVYWLK S   ++D++
Sbjct: 4532 RQPGRGGTVPPSFLSTIQSASVATGQLARFDAKITGTKPLDVYWLKNSKKIIADIR 4587

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204650|gb|EFN83272.1| Titin [Harpegnathos saltator]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 179/226 (79%), Gaps = 24/226 (10%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            PEPS S VHG+E+H AK +Q QKE KGD EI RKITATETTE+EHKGK QERVV      
Sbjct: 8490 PEPSESTVHGREVHVAKQKQTQKEVKGDVEITRKITATETTEVEHKGKTQERVVQG---- 8545

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                               + KPAKPPVFTKKIQPCRAFEQ+QA+FEVEFDGDPLPTIKW
Sbjct: 8546 -------------------QVKPAKPPVFTKKIQPCRAFEQEQAKFEVEFDGDPLPTIKW 8586

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-K 226
            +REDFPI +S D QI+TFSTKS+LI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE +
Sbjct: 8587 YREDFPIQNSADLQIYTFSTKSVLIVRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 8646

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            RQ GRGG +PPSFL+TI S  +  GQLARFDAKI+ TKPLDVYWLK
Sbjct: 8647 RQPGRGGAIPPSFLSTIQSTSLATGQLARFDAKITGTKPLDVYWLK 8692

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172723|gb|EFN64029.1| Titin [Camponotus floridanus]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 160/226 (70%), Positives = 177/226 (78%), Gaps = 24/226 (10%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            P PS S +HG+E+H AK +Q QKE KGD EI RKITATETTE+EHK K QERVV      
Sbjct: 9314 PGPSESTIHGREVHVAKQKQTQKEVKGDLEITRKITATETTEVEHKAKTQERVVQG---- 9369

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                               + KPAKPPVFTKKIQPCRAFEQ+QA+FEVEFDGDPLPTIKW
Sbjct: 9370 -------------------QVKPAKPPVFTKKIQPCRAFEQEQAKFEVEFDGDPLPTIKW 9410

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
            +REDFPI +S D QI+TFSTKSILI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE+R
Sbjct: 9411 YREDFPIQNSADLQIYTFSTKSILIIRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 9470

Query: 228  QG-GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            +  GRGG VPPSFLTTI S  +  GQLARFDAKI+ TKPLDVYWLK
Sbjct: 9471 RHPGRGGAVPPSFLTTIQSTSVATGQLARFDAKITGTKPLDVYWLK 9516

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022532|ref|XP_002431694.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517002|gb|EEB18956.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/269 (61%), Positives = 193/269 (71%), Gaps = 26/269 (9%)

Query: 6    KKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRK--VSVPEPSASGVHGKEIHTA 63
            K+EP L+ WQ+K   +SR   ++     TE  +  D R+    VPEPS S VHGKE+H +
Sbjct: 4281 KEEPVLE-WQQKAKERSRRLKTEYDETETETVEGTDKRRGVRGVPEPSESTVHGKEVHVS 4339

Query: 64   KSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123
            K +Q QKE +GD EI R I+ATETTE+EHK    ERVVD                     
Sbjct: 4340 KQRQKQKEIQGDLEITRNISATETTEVEHKATTHERVVDGP------------------- 4380

Query: 124  DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 183
                 KPAK P FTKKIQPCRAFEQ+QARFEVE+DGDP+P +KWFRE+  I +SPDFQIH
Sbjct: 4381 ----VKPAKAPFFTKKIQPCRAFEQEQARFEVEYDGDPMPKVKWFRENQLINNSPDFQIH 4436

Query: 184  TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
            TF TKS+LI+RQVF+EDSGVF+VIAENRGG AKCSANLVVEEKR+ GRGG +PP+FLTTI
Sbjct: 4437 TFGTKSVLILRQVFLEDSGVFSVIAENRGGTAKCSANLVVEEKRKTGRGGTIPPNFLTTI 4496

Query: 244  SSAVINVGQLARFDAKISATKPLDVYWLK 272
             S V+  GQLARFDAKIS TKPLDVYWLK
Sbjct: 4497 QSCVVPAGQLARFDAKISGTKPLDVYWLK 4525

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285443|ref|XP_001687892.1| AGAP007563-PA [Anopheles gambiae str. PEST] gi|157019994|gb|EDO64541.1| AGAP007563-PA [Anopheles gambiae str. PEST]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 150/240 (62%), Positives = 182/240 (75%), Gaps = 24/240 (10%)

Query: 34   TEETKIIDG-RKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEH 92
            +E  ++ID  +K  +PEP+ + V GKE+H ++ +Q QKE   DKEI+RKITATETTEMEH
Sbjct: 4413 SENVELIDAPKKKLIPEPTETSVQGKEVHISQQKQTQKEVYDDKEIIRKITATETTEMEH 4472

Query: 93   KGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
            KG  QERVV+                          +P KPPVFT+KIQPCRAFE +QAR
Sbjct: 4473 KGTTQERVVEGP-----------------------VQPTKPPVFTRKIQPCRAFENEQAR 4509

Query: 153  FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
            FEVEFDG+P+PT+KWFRE+F I +S DFQIHTF TKS+LI+RQVF+EDS VFAVIAENRG
Sbjct: 4510 FEVEFDGEPMPTVKWFRENFQINNSADFQIHTFGTKSVLIIRQVFLEDSAVFAVIAENRG 4569

Query: 213  GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            G AKCSANLVVE++RQ GRGGV+PPSF++TIS   +  GQLARFDAK++ TKPLDVYWLK
Sbjct: 4570 GTAKCSANLVVEQRRQQGRGGVIPPSFVSTISDTTVTAGQLARFDAKVTGTKPLDVYWLK 4629

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798410|gb|EFZ20130.1| hypothetical protein SINV_16483 [Solenopsis invicta]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 158/226 (69%), Positives = 176/226 (77%), Gaps = 24/226 (10%)

Query: 48   PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELD 107
            P PS S VHG+E+H AK +Q QKE K D EI RKITATETTE+EHK K QERVV      
Sbjct: 2201 PGPSESTVHGREVHVAKQKQTQKEIKDDVEITRKITATETTEVEHKAKTQERVVQG---- 2256

Query: 108  DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW 167
                               + KPAKPP+FTKKIQPCRAFEQ+QA+FEVEFDGDPLPTIKW
Sbjct: 2257 -------------------QVKPAKPPIFTKKIQPCRAFEQEQAKFEVEFDGDPLPTIKW 2297

Query: 168  FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-K 226
            +REDFPI +S D QI+TFSTKS+LI+RQVFMEDSGVF+VIAENRGGKAKCSANLVVEE +
Sbjct: 2298 YREDFPIQNSADLQIYTFSTKSVLIIRQVFMEDSGVFSVIAENRGGKAKCSANLVVEERR 2357

Query: 227  RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            RQ GRGG VPPSFL+TI  A +  GQLARFDAKI+ TKPLDVYWLK
Sbjct: 2358 RQPGRGGAVPPSFLSTIQPASVITGQLARFDAKITGTKPLDVYWLK 2403

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285447|ref|XP_308314.4| AGAP007563-PC [Anopheles gambiae str. PEST] gi|157019996|gb|EAA04742.5| AGAP007563-PC [Anopheles gambiae str. PEST]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/240 (62%), Positives = 182/240 (75%), Gaps = 24/240 (10%)

Query: 34   TEETKIIDG-RKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEH 92
            +E  ++ID  +K  +PEP+ + V GKE+H ++ +Q QKE   DKEI+RKITATETTEMEH
Sbjct: 4413 SENVELIDAPKKKLIPEPTETSVQGKEVHISQQKQTQKEVYDDKEIIRKITATETTEMEH 4472

Query: 93   KGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
            KG  QERVV+                          +P KPPVFT+KIQPCRAFE +QAR
Sbjct: 4473 KGTTQERVVEGP-----------------------VQPTKPPVFTRKIQPCRAFENEQAR 4509

Query: 153  FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
            FEVEFDG+P+PT+KWFRE+F I +S DFQIHTF TKS+LI+RQVF+EDS VFAVIAENRG
Sbjct: 4510 FEVEFDGEPMPTVKWFRENFQINNSADFQIHTFGTKSVLIIRQVFLEDSAVFAVIAENRG 4569

Query: 213  GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            G AKCSANLVVE++RQ GRGGV+PPSF++TIS   +  GQLARFDAK++ TKPLDVYWLK
Sbjct: 4570 GTAKCSANLVVEQRRQQGRGGVIPPSFVSTISDTTVTAGQLARFDAKVTGTKPLDVYWLK 4629

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
FB|FBgn0086906	18	sls "sallimus" [Drosophila mel	0.508	8.0	0.729	2.7e-71
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.826	6.882	0.270	3.7e-14
FB|FBgn0052311	3651	zormin "zormin" [Drosophila me	0.473	0.036	0.338	1.1e-12
UNIPROTKB|Q6LDG3	212	MYLK "Uncharacterized protein"	0.392	0.523	0.330	5.6e-12
UNIPROTKB|Q6P2N0	153	MYLK "Myosin light chain kinas	0.392	0.725	0.345	1.2e-11
RGD|1308510	1298	Mypn "myopalladin" [Rattus nor	0.318	0.069	0.4	6e-11
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.865	7.205	0.242	8.4e-11
FB|FBgn0053519	4218	Unc-89 "Unc-89" [Drosophila me	0.667	0.044	0.295	9.2e-11
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.865	7.0	0.25	1.2e-10
WB|WBGene00004130	4488	ketn-1 [Caenorhabditis elegans	0.703	0.044	0.251	1.3e-10

FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)]

 Score = 587 (211.7 bits), Expect = 2.7e-71, Sum P(2) = 2.7e-71
 Identities = 105/144 (72%), Positives = 125/144 (86%)

Query:   129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
             KPAK PVFTKKIQPCR FE +QA+FEVEF+G+P PT+KW+RE FPI +SPD QIHTFS K
Sbjct:  4389 KPAKAPVFTKKIQPCRVFENEQAKFEVEFEGEPNPTVKWYRESFPIQNSPDLQIHTFSGK 4448

Query:   189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
             SILI+RQVF+EDS VF+ +AENRGG AKCSANLVVEE+R+ G+GG+ PPSF+TTI S  +
Sbjct:  4449 SILIIRQVFVEDSAVFSCVAENRGGTAKCSANLVVEERRRAGKGGIQPPSFVTTIQSTTV 4508

Query:   249 NVGQLARFDAKISATKPLDVYWLK 272
               GQLARFDAK++ T+PLDVYWLK
Sbjct:  4509 ATGQLARFDAKVTGTRPLDVYWLK 4532

GO:0030017 "sarcomere" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=ISS

GO:0003779 "actin binding" evidence=IMP;IDA

GO:0030018 "Z disc" evidence=IMP;IDA

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IGI;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007517 "muscle organ development" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 69/255 (27%), Positives = 116/255 (45%)

Query:    26 SSDRSGVST--EETKIIDGRK-VSVPEPSASGVHGKEIHTAKSQQVQKEKKGD---KEIV 79
             +S++ G  T   E  IID    +   EP  S ++ K+IH     QV +++K      +  
Sbjct:  4525 ASNKFGADTCQAELDIIDKPHFIKELEPVQSAIN-KKIHL--EGQVDEDRKVTITWSKNG 4581

Query:    80 RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAK-PPVFTK 138
             +K+   +  ++  + KI    +  ++L D G Y  T       S  S     + PP F K
Sbjct:  4582 QKLPPGKDYKIYFEDKIASLEIPLAKLKDSGTYVCTASNEAGSSSTSATVTIREPPSFVK 4641

Query:   139 KIQPCRAF-EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
             K+ P       + AR      G P+  + WF+ +  +T S   ++   +++++L +  V 
Sbjct:  4642 KVDPSYLMLPGESARLHCRLKGSPVIQVTWFKNNKELTESNTIRMSFVNSEAVLDITDVK 4701

Query:   198 MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFD 257
             +EDSG ++  A N  G   CSA +VV+E          PPSF+ T+  A I  G  A   
Sbjct:  4702 VEDSGTYSCEAVNDVGSDSCSAEIVVKE----------PPSFIKTLEPADIVRGTNALLQ 4751

Query:   258 AKISATKPLDVYWLK 272
              +I+ T P ++ W K
Sbjct:  4752 CEIAGTGPFEISWFK 4766

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0052311 zormin "zormin" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 47/139 (33%), Positives = 70/139 (50%)

Query:   133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
             PP   + +Q  +A E    +F     G PLPT++WF+ D  I  SPD+ I   + ++ L 
Sbjct:  1477 PPRILRFLQSGKATEGSSFQFACVVAGVPLPTVQWFKNDKCIDDSPDYVISYNNGEATLK 1536

Query:   193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
               +VF+ED  V+   A N  G   CSA+L+VE            PSF   +S+A+  VGQ
Sbjct:  1537 FEEVFLEDDAVYTCSASNPAGIEHCSASLIVEPLEP-----TELPSFKVPLSNAMARVGQ 1591

Query:   253 LARFDAKISATKPLDVYWL 271
               + +A +      +VYWL
Sbjct:  1592 KIKLEAIVGGIPRPEVYWL 1610

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q6LDG3 MYLK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 37/112 (33%), Positives = 58/112 (51%)

Query:   122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
             L +++E+KP   P FTK I      E   ARF+ + +G P P + W+++D P+  S  FQ
Sbjct:    88 LEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKIEGYPDPEVMWYKDDQPVKESRHFQ 147

Query:   182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
             I +       L + +V  +D   +   A N  G+A C+A L+VE   + G G
Sbjct:   148 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG 199

GO:0001725 "stress fiber" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|Q6P2N0 MYLK "Myosin light chain kinase, smooth muscle" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 39/113 (34%), Positives = 58/113 (51%)

Query:   122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
             L  ++E+KP   P F+K I+     E   ARF+ + +G P P + WF++D  I  S  FQ
Sbjct:    36 LEAVAEEKPHVKPYFSKTIRDLEVVEGSAARFDCKIEGYPDPEVVWFKDDQSIRESRHFQ 95

Query:   182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG-GRG 232
             I +       LI+  V  +D   +   A N  G+A C+A L+VE   +G G G
Sbjct:    96 IDYDEDGNCSLIISDVCGDDDAKYTCKAVNSLGEATCTAELIVETMEEGEGEG 148

GO:0016301 "kinase activity" evidence=IEA

RGD|1308510 Mypn "myopalladin" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
 Identities = 36/90 (40%), Positives = 45/90 (50%)

Query:   134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
             PVFTK +Q   A E     FE    G P P ++W+RE   I  SPDF+I        L++
Sbjct:   422 PVFTKMLQNLSASEGQLVVFECRVKGAPSPKVEWYREGTLIEDSPDFRILQKKEICTLVI 481

Query:   194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
              +VF EDSG F   A N+ G     A L V
Sbjct:   482 AEVFAEDSGCFTCTASNKYGTVSSIAQLAV 511

GO:0005634 "nucleus" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO

GO:0017124 "SH3 domain binding" evidence=IEA;ISO

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0045214 "sarcomere organization" evidence=IEA;ISO

GO:0051371 "muscle alpha-actinin binding" evidence=IEA;ISO

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
 Identities = 64/264 (24%), Positives = 119/264 (45%)

Query:    15 QKKNILKSRTASSDRSGVSTEETKIIDGRK-VSVPEPSASGVHGKEIHTAKSQQVQKEKK 73
             Q + +   + ++   + +   E  IID    +   EP  S ++ K++H     QV +++K
Sbjct:  4543 QDRGVYSCKASNKFGADICQAELIIIDKPHFIKELEPVQSAIN-KKVHL--ECQVDEDRK 4599

Query:    74 GD---KEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKP 130
                   +  +K+   +  ++  + KI    +  ++L D G Y  T       S  S    
Sbjct:  4600 VTVTWSKDGQKLPPGKDYKICFEDKIATLEIPLAKLKDSGTYVCTASNEAGSSSCSATVT 4659

Query:   131 AK-PPVFTKKIQPCRAF-EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
              + PP F KK+ P       + AR   +  G P+  + WF+ +  ++ S   +++  +++
Sbjct:  4660 VREPPSFVKKVDPSYLMLPGESARLHCKLKGSPVIQVTWFKNNKELSESNTVRMYFVNSE 4719

Query:   189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
             +IL +  V +EDSG ++  A N  G   CS  +V++E          PPSF+ T+  A I
Sbjct:  4720 AILDITDVKVEDSGSYSCEAVNDVGSDSCSTEIVIKE----------PPSFIKTLEPADI 4769

Query:   249 NVGQLARFDAKISATKPLDVYWLK 272
               G  A    ++S T P ++ W K
Sbjct:  4770 VRGTNALLQCEVSGTGPFEISWFK 4793

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

FB|FBgn0053519 Unc-89 "Unc-89" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 58/196 (29%), Positives = 85/196 (43%)

Query:    82 ITATETTEMEHKGKIQERVVDASELDDDGYY----AITERKYYALSDLSEQKPAKPPVFT 137
             +T  E   M   GK     +  +E  D G Y    A    +  +  + + +K  KPPVFT
Sbjct:  2559 LTPNERLLMTCDGKHIGLTIKPAEAADSGNYTCLLANPLGEDSSACNANVRKVYKPPVFT 2618

Query:   138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
             +KI   +    + A+  V   G P P ++W+ +D PI  S  + I       +LI+    
Sbjct:  2619 QKISDQQQVFGNNAKIPVTVSGVPYPDLEWYFQDKPIPKSEKYSIKNDGDHHMLIVNNCE 2678

Query:   198 MEDSGVFAVIAENRGGKAKCSANL-VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARF 256
               D GV+  IA NR GK      L +V E ++  R    PP FL  I    I  G +A+F
Sbjct:  2679 KGDQGVYKCIASNREGKDITQGRLDIVNEIKKHSRSE--PPVFLKKIGDCDIYEGMVAKF 2736

Query:   257 DAKISATKPLDVYWLK 272
              A  +     +V W K
Sbjct:  2737 TACATGYPEPEVEWFK 2752

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0004672 "protein kinase activity" evidence=IKR

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0031430 "M band" evidence=IDA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
 Identities = 66/264 (25%), Positives = 118/264 (44%)

Query:    15 QKKNILKSRTASSDRSGVSTEETKIIDGRK-VSVPEPSASGVHGKEIHTAKSQQVQKEKK 73
             Q + I   + ++   + +   E  IID    +   E   S ++ K+IH     QV +++K
Sbjct:  4504 QDRGIYSCKASNKFGADICQAELTIIDKPHFIKELEAVQSAIN-KKIHL--ECQVDEDRK 4560

Query:    74 GD---KEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKP 130
                   +  +K+ A +  ++  + KI    +  ++L D G Y  T       S  S    
Sbjct:  4561 VTITWSKDGQKLPAGKDYKIYFEDKIASLEIPLAKLKDSGTYTCTASNEAGSSSSSAAVA 4620

Query:   131 AK-PPVFTKKIQPCRAF-EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
              + PP F KK+ P       + AR   +  G P+  + WF+ +  ++ S   ++   +++
Sbjct:  4621 VREPPSFVKKVDPSYLMLPGESARLHCKLKGSPVIQVTWFKNNKELSESNTVRMSFVNSE 4680

Query:   189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
             +IL +  V ++DSG ++  A N  G   CS  +V++E          PPSF+ T+  A I
Sbjct:  4681 AILDITDVKVDDSGTYSCEATNDVGSDSCSTEVVIKE----------PPSFIKTLEPADI 4730

Query:   249 NVGQLARFDAKISATKPLDVYWLK 272
               G  A    +I+ T P +V W K
Sbjct:  4731 VRGANALLQCEIAGTGPFEVNWFK 4754

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

WB|WBGene00004130 ketn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 53/211 (25%), Positives = 94/211 (44%)

Query:    70 KEKKGDKEIVRK-ITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQ 128
             K+ K  K   R  IT T T    H G+++        +  +      E    +L++L+  
Sbjct:  4106 KDGKEIKSTFRTLITTTPTNSSLHIGRLENSHAGEYTVRLENAAGTVE----SLANLTVA 4161

Query:   129 KPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
              P    K P F+ ++   R  +   A F  +  G+P PTI+WF++  P+ +   FQ+   
Sbjct:  4162 PPTTQGKAPDFSARLNDLRIQQNGPAEFSCQIGGEPKPTIQWFKDGQPLPNDDRFQVVEE 4221

Query:   186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVP----PSFLT 241
                  L    +   D+G++ ++A+N  G+A+C A L V  ++ G      P    P F +
Sbjct:  4222 GGAYKLKFSNIISTDAGIYEIVAKNGVGEARCKARLNVNLQKTGKGAEEGPRYEAPRFTS 4281

Query:   242 TISSAVINVGQLARFDAKISATKPLDVYWLK 272
              I   V++ G+ A+F A+ S      + W +
Sbjct:  4282 QIQPIVVDEGKGAQFSAQFSGFPDPTIRWYR 4312

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0031674 "I band" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9I7U4	TITIN_DROME	No assigned EC number	0.6371	0.7173	0.0111	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	283
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-20
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-11
smart00409	85	smart00409, IG, Immunoglobulin	5e-11
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	9e-11
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-09
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	7e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	2e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	2e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	3e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	6e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	8e-04
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.001
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	0.002
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.004
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.004
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 83.5 bits (207), Expect = 1e-20
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           P FT+K +     E + ARF     GDP PT+ WF++  P+ SS  F++        L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
             V  +D G +  +A N  G+A+ SA L V
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 149 DQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207
           +      E  G P P + W+++    +  S  F +    + S L +  V  EDSG +   
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Query: 208 AENRGGKAKCSANLVV 223
           A N  G A     L V
Sbjct: 70  ATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 149 DQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207
           +      E  G P P + W+++    +  S  F +    + S L +  V  EDSG +   
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Query: 208 AENRGGKAKCSANLVV 223
           A N  G A     L V
Sbjct: 70  ATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 56.4 bits (137), Expect = 9e-11
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211
           R EV   G P PT+ W ++  P+  S   QI T ++ + L+++     DSG + +  +N 
Sbjct: 3   RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62

Query: 212 GGKAKCSANLVV 223
            G+   + N+ V
Sbjct: 63  AGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 40/82 (48%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P     K +     E + ARF  + DG+P PT+ W RE   I SS   QI +   KS   
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 193 MRQVFMEDSGVFAVIAENRGGK 214
           + +V M D G + V+ EN  GK
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGK 84

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPD----FQIHTFSTKSILIMRQVFMEDSGVFAV 206
                   G P PTI W +   P+ SS          T S  S L +  V +EDSG +  
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 207 IAENRGGKAKCSAN 220
           +A N  G    S  
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
             F+ E  GDP+PT+ W +ED  +   P  +      KS+ I R V   D G +   AEN
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL---PKGRAEILDDKSLKI-RNVTAGDEGSYTCEAEN 56

Query: 211 RGGKAKCSANLVV 223
             GK + SA+L V
Sbjct: 57  MVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213
           +G+P+P I W ++  P+  S        ++ S L ++ V +EDSG++  +AEN  G
Sbjct: 12  EGNPVPNITWLKDGKPLPES----NRFVASGSTLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS-ILIMRQVFMEDSGVFAVIAENRGGKAK 216
           DG P PT +WFR+  P+  S     ++ S+K   L +R    +DSG++   A N  G   
Sbjct: 8   DGHPRPTYQWFRDGTPL--SDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65

Query: 217 CSANL 221
            S N 
Sbjct: 66  SSQNF 70

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
           +G PLP + W +    IT     Q+   +  S L +  V  ED+G +  IA+N  G  + 
Sbjct: 8   EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED 67

Query: 218 SANLVVEE 225
            ++L VE+
Sbjct: 68  ISSLFVED 75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
           K I    A      R+E +  G+P P  +W +   P+ S    ++        L + ++ 
Sbjct: 4   KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRITKLS 59

Query: 198 MEDSGVFAVIAENRGGKAKCSANLVV 223
           + DSG++  +AEN+ G    SA L V
Sbjct: 60  LSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
           FE E  G P PT+KW +    +  S  F+I       +L + +    D G +  IAEN  
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK---SDEGFYQCIAENDV 60

Query: 213 GKAKCSANLVV 223
           G  +  A L++
Sbjct: 61  GNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 151 ARFEVEFDGDPLPTIKWFRE---DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207
           AR E    G P P I W ++   DFP  ++ + ++H      +  +  V +ED+GV++  
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFP--AARERRMHVMPEDDVFFIVDVKIEDTGVYSCT 58

Query: 208 AENRGGKAKCSANLVV 223
           A+N  G    +A L V
Sbjct: 59  AQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI-LIMRQVFMEDSGVFAVIAE 209
           R E    G P P I W +E+  +T + D   +H  +   I L+++    ED+G + V A+
Sbjct: 2   RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61

Query: 210 NRGGKAKCSANLVV 223
           N  G   C+A L V
Sbjct: 62  NEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--SILIMRQVFMEDSGVFAVIAE 209
           R +V   G+P PT+ W R D   T + + ++   S K  S  ++     ED GV+ +   
Sbjct: 14  RLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVT 72

Query: 210 NRGGKAKCSANLVV 223
           N  G+   S  + V
Sbjct: 73  NPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITS---SPDFQIHTFST--KSILIMRQVFME 199
           A E +Q     E +GDP+P I W R     +    S D +I        S L ++ V + 
Sbjct: 13  AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72

Query: 200 DSGVFAVIAENRGG 213
           D+G +   A NR G
Sbjct: 73  DAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
           GDP PTI W ++   +T S  F I   S +  L +R V + D G +  +A N  G A  S
Sbjct: 9   GDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVS 65

Query: 219 ANL 221
             L
Sbjct: 66  MVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
           DG P PT+ W ++  PI S  +   ++F+   S + +  V   D   +  IAEN+ G+ +
Sbjct: 28  DGFPEPTMTWTKDGEPIESGEE--KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85

Query: 217 CSANLVV 223
              +L V
Sbjct: 86  AEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
           P F        +  G+ ARF   ++      V W K
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK 36

Length = 90

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI-LIMRQVFMEDSGVFAVIA 208
            R E      P P I W + +  +T + D   ++  +   I L+++    ED+G + V A
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 209 ENRGGKAKCSANLVV 223
            N  G   C+A L V
Sbjct: 61  VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 209
            R + E +G P PTI W     PI    PD +         LI+  V   D+ V+   A 
Sbjct: 4   GRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNAS 61

Query: 210 NRGGKAKCSANLVV 223
           N  G    +A + V
Sbjct: 62  NVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
            +  V++ G P P +KW++    I  +     HTF     L + +V  +D+G + V+  N
Sbjct: 1   VKIPVKYYGYPPPEVKWYKNGQLIVLN-----HTFKRGVHLTIYEVTEKDAGNYTVVLTN 55

Query: 211 RGGKAK 216
              K +
Sbjct: 56  PITKEE 61

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P     K +   A +      E    G+P+P I+W +   P+ ++ +  +    + ++L 
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLK 56

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           +  +  ED G +   AEN  GK K  A + V+
Sbjct: 57  IFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P +     +   A +      E    G+P+P IKW + D  + SS +       + ++L 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE----ISMSGAVLK 56

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           +  +  ED G +   AEN  GK      + V+
Sbjct: 57  IPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-LIMRQVFMEDSGVFAVIAENRGG 213
           GDP P + W + D  +  S  + +     K   L ++ V  EDSG + ++ +N+ G
Sbjct: 27  GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS-ILIMRQVFMEDSGVFAVIAEN 210
           R +    G+P PTI W ++  P         +    K   LI+  V   DSG +  I EN
Sbjct: 13  RLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72

Query: 211 RGG 213
           + G
Sbjct: 73  KYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG3513|consensus	1051		99.98
KOG3513|consensus	1051		99.97
KOG4194|consensus	873		99.94
KOG4221|consensus	1381		99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.91
KOG4222|consensus	1281		99.89
KOG4194|consensus	873		99.85
KOG4222|consensus	1281		99.85
KOG4221|consensus	1381		99.83
PHA02785	326	IL-beta-binding protein; Provisional	99.81
PHA02826	227	IL-1 receptor-like protein; Provisional	99.79
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.77
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.69
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.68
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.66
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.64
PHA02826	227	IL-1 receptor-like protein; Provisional	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.63
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.62
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.61
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.61
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.61
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.61
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.6
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.6
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.59
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.59
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.58
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.58
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.58
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.58
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.58
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.57
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.55
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.55
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.54
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.52
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.51
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.51
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.51
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.5
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.5
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.5
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.5
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.49
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.48
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.48
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.48
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.48
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.48
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.47
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.47
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.47
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.46
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.46
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.45
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.45
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.45
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.44
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.43
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.43
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.43
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.42
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.42
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.42
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.41
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.37
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.36
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.34
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.34
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.31
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.31
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.31
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.3
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.29
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.29
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.28
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.26
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.26
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.23
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.21
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.21
KOG3515|consensus	741		99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.2
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.16
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.13
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.13
smart00409	86	IG Immunoglobulin.	99.1
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.1
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.07
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.06
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.06
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.06
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.06
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.05
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.05
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.04
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.04
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.04
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.04
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.01
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.01
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.01
PHA03376	221	BARF1; Provisional	99.0
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.99
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.99
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.98
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.97
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.96
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.94
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.93
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.92
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.92
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.92
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.91
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.91
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.91
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.9
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.89
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.89
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.88
PHA03376	221	BARF1; Provisional	98.87
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.87
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.87
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.86
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.85
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.84
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.83
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.82
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.82
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.82
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.82
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.81
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.8
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.79
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.78
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.78
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.77
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.76
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.76
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.76
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.75
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.75
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.74
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.74
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.73
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.72
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.72
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.71
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.71
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.71
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.7
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.7
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.69
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.68
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.68
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.68
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.67
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.66
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.66
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.66
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.64
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.64
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.63
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.63
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.62
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.61
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.61
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.6
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.6
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.6
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.59
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.59
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.59
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.59
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.58
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.58
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.58
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.57
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.57
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.56
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.55
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.55
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.55
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.54
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.54
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.54
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.52
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.52
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.52
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.52
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.52
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.5
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.5
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.48
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.48
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.47
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.47
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.47
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.47
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.46
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.45
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.43
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.43
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.4
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.39
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.39
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.38
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.38
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.37
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.36
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.34
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.34
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.34
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.32
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.31
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.31
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.3
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.3
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.29
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.26
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.26
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.25
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.25
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.24
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.24
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.22
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.2
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.2
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.2
smart00409	86	IG Immunoglobulin.	98.2
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.17
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.17
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.15
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.15
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.13
KOG3515|consensus	741		98.12
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.12
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.11
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.09
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.06
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.05
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.05
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.04
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.02
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.01
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.01
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.99
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.98
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.97
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.97
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.97
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.96
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.94
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.92
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.9
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.9
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.85
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.85
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.82
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.81
smart00407	75	IGc1 Immunoglobulin C-Type.	97.77
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.73
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.7
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.7
smart00406	81	IGv Immunoglobulin V-Type.	97.69
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.69
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.67
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.64
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.62
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.61
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.61
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.59
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.59
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.58
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.55
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.55
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.54
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.54
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.53
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.52
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.5
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.49
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.49
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.46
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.44
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.41
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.4
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.39
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.39
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.38
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.31
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.3
PHA03273	486	envelope glycoprotein C; Provisional	97.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.23
PHA03269	566	envelope glycoprotein C; Provisional	97.19
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.18
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.18
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.18
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.12
PHA03270	466	envelope glycoprotein C; Provisional	97.1
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.09
PHA03271	490	envelope glycoprotein C; Provisional	97.08
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.08
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.04
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.04
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.96
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.9
KOG1480|consensus	909		96.85
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.84
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.83
KOG0613|consensus	1205		96.83
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.82
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.77
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.76
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.76
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.69
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.66
PHA02982	251	hypothetical protein; Provisional	96.64
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.61
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.51
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.48
PHA02633	63	hypothetical protein; Provisional	96.47
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	96.45
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.43
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.42
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.41
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.38
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.38
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.37
smart00406	81	IGv Immunoglobulin V-Type.	96.35
PHA02633	63	hypothetical protein; Provisional	96.35
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.32
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.3
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.29
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.26
PHA03273	486	envelope glycoprotein C; Provisional	96.26
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.24
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.23
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.23
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.13
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.06
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.04
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	95.99
PHA03270	466	envelope glycoprotein C; Provisional	95.96
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	95.87
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	95.86
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.86
KOG4597|consensus	560		95.85
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.84
smart00407	75	IGc1 Immunoglobulin C-Type.	95.78
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.65
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	95.43
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.23
PHA03269	566	envelope glycoprotein C; Provisional	95.13
PHA03271	490	envelope glycoprotein C; Provisional	95.09
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.59
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.58
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	94.12
PHA02982	251	hypothetical protein; Provisional	93.61
PHA03042	286	CD47-like protein; Provisional	92.98
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	92.79
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.54
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	91.07
PHA02865	338	MHC-like TNF binding protein; Provisional	90.78
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	90.37
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	90.28
KOG0613|consensus	1205		90.2
PHA02914	500	Immunoglobulin-like domain protein; Provisional	90.18
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	88.02
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	87.82
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	86.71
PHA03052	69	Hypothetical protein; Provisional	83.94
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	83.65
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	82.82
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	82.24
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	81.96
PHA03042	286	CD47-like protein; Provisional	81.48
KOG1480|consensus	909		80.62

>KOG3513|consensus

Probab=99.98  E-value=9.4e-31  Score=235.29  Aligned_cols=244  Identities=18%  Similarity=0.249  Sum_probs=199.3

Q ss_pred             ccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeec------CCC-
Q psy14060         16 KKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA------TET-   87 (283)
Q Consensus        16 ~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~-   87 (283)
                      +++=.+.|+|+|..|.......+.|+..|.....+.-     .++..|+.++|.|.+.|.|..+ +|+..      ..+ 
T Consensus       304 ~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d-----~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~  378 (1051)
T KOG3513|consen  304 EDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQD-----TEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERD  378 (1051)
T ss_pred             CCCeEEEEEEecccccceeeEEEEEecCchhhcccce-----eEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCC
Confidence            3444678999999999999999999998876655532     2466778999999999999444 44432      333 


Q ss_pred             --EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC-CCCCeEEecCCce--eecCCCcEEEEEEEeeec
Q psy14060         88 --TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP-AKPPVFTKKIQPC--RAFEQDQARFEVEFDGDP  161 (283)
Q Consensus        88 --~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~-~~~p~~~~~~~~~--~~~~g~~v~l~C~~~g~p  161 (283)
                        +.+.    ...|.|.+++.+|+|.|+|.|+|..|. .....+.+ ..+|.|...+-..  .+..|..+.|.|...+.|
T Consensus       379 ~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP  454 (1051)
T KOG3513|consen  379 PRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP  454 (1051)
T ss_pred             cceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC
Confidence              4443    457999999999999999999999993 34444444 3457776665444  567799999999999999


Q ss_pred             CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe
Q psy14060        162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT  241 (283)
Q Consensus       162 ~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~  241 (283)
                      .|.++|.|++..+..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|.+.....|.|.+          ++.++.
T Consensus       455 ~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------~tri~~  521 (1051)
T KOG3513|consen  455 KPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----------ATRITL  521 (1051)
T ss_pred             cceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEec----------CceEEe
Confidence            9999999999877777788777666   499999999999999999999999999999999996          788988


Q ss_pred             cCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecCCC
Q psy14060        242 TISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDVKR  281 (283)
Q Consensus       242 ~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~~~  281 (283)
                      .+....+..|++++|+|++...+..  .|.|.+||+.++...
T Consensus       522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~  563 (1051)
T KOG3513|consen  522 APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP  563 (1051)
T ss_pred             ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence            8888999999999999999877665  699999999988763

>KOG3513|consensus

Probab=99.97  E-value=1.5e-28  Score=221.30  Aligned_cols=243  Identities=20%  Similarity=0.231  Sum_probs=189.2

Q ss_pred             cceEEEEEcCCee---eeeeeEEEEeCCC-CCCCCCceeeecC--CeeeecCcEEEEEEEccCc--cceEEe-----ecC
Q psy14060         19 ILKSRTASSDRSG---VSTEETKIIDGRK-VSVPEPSASGVHG--KEIHTAKSQQVQKEKKGDK--EIVRKI-----TAT   85 (283)
Q Consensus        19 ~~~~~~a~n~~g~---~~~~~~l~v~~~~-~~~~~p~~~~~~~--~~v~~g~~v~l~C~~~g~~--~i~~~~-----~~~   85 (283)
                      --++|.|++-.-+   ....+.|.+.... .....|.+.....  .....|+.|.|+|-+.|+|  .|. |.     ...
T Consensus       206 ~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~-W~k~~g~~~~  284 (1051)
T KOG3513|consen  206 GNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIK-WRKVDGKPPP  284 (1051)
T ss_pred             CceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEE-EEeCCCCCCC
Confidence            4577888883222   2444556663332 2344454443322  2355688999999999999  343 22     222


Q ss_pred             CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCE
Q psy14060         86 ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT  164 (283)
Q Consensus        86 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~  164 (283)
                      .+.....  ....|.|.+++.+|+|.|+|.|.|..|. .....+.+..+|.++..+.+..+..|+.+.|.|.+.|.|.|+
T Consensus       285 ~r~~~~~--~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~  362 (1051)
T KOG3513|consen  285 RRATYSN--YGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT  362 (1051)
T ss_pred             cceeeec--cccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc
Confidence            3334333  4568999999999999999999999994 334566778899999999999999999999999999999999


Q ss_pred             EEEEeCCEecCCCCC---eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe
Q psy14060        165 IKWFREDFPITSSPD---FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT  241 (283)
Q Consensus       165 ~~W~k~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~  241 (283)
                      ++|++|+.++....+   +.+..    .+|.|+++...|+|.|.|.|.|.+|...+.+.|.|..         .+|.|..
T Consensus       363 v~WlkNg~pl~~~~r~~~~~i~~----g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a---------~~P~f~~  429 (1051)
T KOG3513|consen  363 VKWLKNGEPLEPAERDPRYKIDD----GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA---------SAPVFPL  429 (1051)
T ss_pred             eEEeeCCeecCccCCCcceEEeC----CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc---------cCCCCCC
Confidence            999999999986554   44432    3599999999999999999999999999999999997         4688877


Q ss_pred             cCCce--EEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        242 TISSA--VINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       242 ~~~~~--~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      .+...  .+..|..+.|.|...+.|.|.++|.++++.+
T Consensus       430 ~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~  467 (1051)
T KOG3513|consen  430 NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL  467 (1051)
T ss_pred             CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence            66554  6789999999999999999999999998843

>KOG4194|consensus

Probab=99.94  E-value=3.3e-26  Score=193.44  Aligned_cols=172  Identities=20%  Similarity=0.348  Sum_probs=150.4

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeccee--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYAL--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP  173 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~  173 (283)
                      ...|.+.||+..|+|.|+|.++|.+|+  +...++.+...|.|+..|.++.+..|+.+.|.|.++|+|.|.|.|-|+|..
T Consensus       573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt  652 (873)
T KOG4194|consen  573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT  652 (873)
T ss_pred             hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence            567999999999999999999999995  345567788899999999999999999999999999999999999998876


Q ss_pred             -cCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcC
Q psy14060        174 -ITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV  250 (283)
Q Consensus       174 -~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~  250 (283)
                       .+.  ..++.+..++.  .+.|.+++.+|.|.|+|.|.|.+|..++.++|.|.+          .|.|..+..+..|..
T Consensus       653 dFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------~p~f~~PL~~~~V~~  720 (873)
T KOG4194|consen  653 DFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------TPSFSIPLEDQLVVV  720 (873)
T ss_pred             CCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec----------CCcccccccceEEEe
Confidence             322  23455554443  588999999999999999999999999999999996          678888888999999


Q ss_pred             CCeEEEEEEEEeeCC-CeeEEeeCCEEecC
Q psy14060        251 GQLARFDAKISATKP-LDVYWLKVSSLSDV  279 (283)
Q Consensus       251 g~~v~L~C~~~g~p~-~~v~W~~~g~~l~~  279 (283)
                      |+++.|.|.+.|.|. |...|+|+++++-.
T Consensus       721 get~vlqC~a~~~~a~pr~~W~k~d~pil~  750 (873)
T KOG4194|consen  721 GETLVLQCLAEGAPADPRLEWFKEDKPILI  750 (873)
T ss_pred             cceEEEEEecCCCCCCccccccCCCCceEE
Confidence            999999999999887 89999999887754

>KOG4221|consensus

Probab=99.93  E-value=2.2e-24  Score=194.26  Aligned_cols=240  Identities=18%  Similarity=0.228  Sum_probs=179.8

Q ss_pred             ceEEEEEcC-Ceee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-c-ce-----EEeecCCCEEE
Q psy14060         20 LKSRTASSD-RSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-E-IV-----RKITATETTEM   90 (283)
Q Consensus        20 ~~~~~a~n~-~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~-i~-----~~~~~~~~~~~   90 (283)
                      .+.|.|+-. .|.. +....+.+...+.+...+     ....+..|+++.|.|.+.+.+ . +.     .++....++.+
T Consensus       115 ~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~-----~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~  189 (1381)
T KOG4221|consen  115 VYQCLATVEDVGSILSRTAKVALAGLADFALQP-----ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV  189 (1381)
T ss_pred             eEEEEEEccccceeecceEEEEecccCccccCc-----cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE
Confidence            345555543 3332 444555555544333322     223478889999999999877 3 22     23444556666


Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEecce--eeeeeccCC------CCCCeEEecCCceeecCCCcEEEEEEEeeecC
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKYYA--LSDLSEQKP------AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL  162 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~--~~~~~~~~~------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~  162 (283)
                      ..   ...|.|.+++++|.|.|+|.+++...  .+....+.+      .....|+..+....+..|+.+.|.|.+.+.|.
T Consensus       190 lp---sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~  266 (1381)
T KOG4221|consen  190 LP---SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK  266 (1381)
T ss_pred             cC---CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC
Confidence            64   45799999999999999999987754  222222222      22345677888889999999999999999999


Q ss_pred             CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEec
Q psy14060        163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT  242 (283)
Q Consensus       163 ~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~  242 (283)
                      |.+.|+||+..+.-.. +++...+ ...|.|++++..|+|.|+|+|.|......+.+.+.|..          +|.|+..
T Consensus       267 p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a----------~P~~~~~  334 (1381)
T KOG4221|consen  267 PSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA----------PPGFTKA  334 (1381)
T ss_pred             CceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEEEecCCCcccccceEEEEEc----------CCCCCCC
Confidence            9999999999886543 4444332 33599999999999999999999877788888899885          7999999


Q ss_pred             CCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        243 ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       243 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      +......++..+.|.|.+.|.|.|.+.|+|||..+..
T Consensus       335 p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip  371 (1381)
T KOG4221|consen  335 PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP  371 (1381)
T ss_pred             CcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc
Confidence            9999999999999999999999999999999976654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.91  E-value=2.5e-22  Score=167.41  Aligned_cols=206  Identities=12%  Similarity=0.164  Sum_probs=137.7

Q ss_pred             eeecCcEEEEEEE-----ccCccce-EEeecCCC--EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccCC
Q psy14060         60 IHTAKSQQVQKEK-----KGDKEIV-RKITATET--TEMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQKP  130 (283)
Q Consensus        60 v~~g~~v~l~C~~-----~g~~~i~-~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~  130 (283)
                      ..+|+.+.|.|.+     .|.|... .|...+..  ...... ....|.|.++..+|+|.|+|.+.|..+.. ....+.+
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V  116 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPID-NGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI  116 (326)
T ss_pred             hhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEcc-CCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence            4467899999997     5766332 44433221  111111 22347799999999999999999997632 2222222


Q ss_pred             --CCCCeEEecCCceeecCCCcEEEEEE-----EeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        131 --AKPPVFTKKIQPCRAFEQDQARFEVE-----FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       131 --~~~p~~~~~~~~~~~~~g~~v~l~C~-----~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                        ..++.+.....+..+.+|..+.|.|.     ..+.|.+.++|+++.. + ...++...   ....|.|.++..+|.|.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~  191 (326)
T PHA02785        117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGY  191 (326)
T ss_pred             EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeE
Confidence              22333333334456778999999997     2356889999998643 2 22233222   22469999999999999


Q ss_pred             EEEEEEeCCceeEE----EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC---eeEEeeCCEE
Q psy14060        204 FAVIAENRGGKAKC----SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL---DVYWLKVSSL  276 (283)
Q Consensus       204 Y~C~a~n~~g~~~~----~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~  276 (283)
                      |+|.+.|..+....    .+.|.|..+       ..||.+ ..+....+..|+.++|.|.+.|.|.+   .+.|++||+.
T Consensus       192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~-------~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~  263 (326)
T PHA02785        192 YTCVLKYIYGDKTYNVTRIVKLEVRDR-------IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMY  263 (326)
T ss_pred             EEEEEEeccCCEEEeEEEEEEEEEecc-------CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEE
Confidence            99999998876543    234555432       134444 44566778889999999999998864   7999999998


Q ss_pred             ecC
Q psy14060        277 SDV  279 (283)
Q Consensus       277 l~~  279 (283)
                      +..
T Consensus       264 i~~  266 (326)
T PHA02785        264 YEE  266 (326)
T ss_pred             CCC
Confidence            853

>KOG4222|consensus

Probab=99.89  E-value=1.6e-22  Score=181.36  Aligned_cols=236  Identities=21%  Similarity=0.295  Sum_probs=185.1

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCC-CCCCCceeeecCCeeeecCcEEEEEEE-ccCccce-E------Eee--cCCC
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKV-SVPEPSASGVHGKEIHTAKSQQVQKEK-KGDKEIV-R------KIT--ATET   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~-~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~~~i~-~------~~~--~~~~   87 (283)
                      -++|.|+|..|.. +....|.+..... +-..|.-     ..+..|+.+.|+|.- .|.|+.+ .      .+.  ...+
T Consensus       106 ~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd-----~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~  180 (1281)
T KOG4222|consen  106 VYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRD-----VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI  180 (1281)
T ss_pred             eeEeeecCccceeeecCceEEEEEechhcccCccc-----ccccccceeEEeccCCCCCCCCcceeecCCCcccccccee
Confidence            3688999999986 4445555544321 2222221     236678899999954 3445433 2      222  1122


Q ss_pred             EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEE
Q psy14060         88 TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI  165 (283)
Q Consensus        88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~  165 (283)
                      +...   ....|.|.|+..+|+|.|.|++.|..+.  +....+.+..+|.|...+..+.+..|..+.+.|.+.|.|.|.+
T Consensus       181 ~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~V  257 (1281)
T KOG4222|consen  181 IALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTV  257 (1281)
T ss_pred             EEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCce
Confidence            2222   2346899999999999999999999984  5566788899999999999999999999999999999999999


Q ss_pred             EEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCc
Q psy14060        166 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS  245 (283)
Q Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~  245 (283)
                      .|.+++..++. .++.+..+  ..+|.|.+++..|.|.|.|.+.|..|.....+.++|+.          +|.|...+.+
T Consensus       258 rwkk~~~~~P~-~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a----------pP~f~kkp~d  324 (1281)
T KOG4222|consen  258 RWKKDDPSLPR-SRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA----------PPSFGKKPRD  324 (1281)
T ss_pred             eeeccCCCCCc-cceeeeec--cccccccccCCCcccceeeeccccccccccccceEEec----------CcccccccCc
Confidence            99997777654 34555443  34699999999999999999999999999999999995          8999999999


Q ss_pred             eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEE
Q psy14060        246 AVINVGQLARFDAKISATKPLDVYWLKVSSL  276 (283)
Q Consensus       246 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~  276 (283)
                      ..+..|..++|.|.+.|+|.|.+.|.+.|..
T Consensus       325 q~v~lg~~vt~pc~~~gnP~PavfW~keg~q  355 (1281)
T KOG4222|consen  325 QKVALGGTVTFPCETLGNPPPAVFWLKEGSQ  355 (1281)
T ss_pred             cccccCceEEeeeecCCCCCcceEEeccCcc
Confidence            9999999999999999999999999997754

>KOG4194|consensus

Probab=99.85  E-value=3.3e-20  Score=157.42  Aligned_cols=196  Identities=16%  Similarity=0.286  Sum_probs=149.5

Q ss_pred             eEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc--cce-EEe-----e--cCCCEE
Q psy14060         21 KSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK--EIV-RKI-----T--ATETTE   89 (283)
Q Consensus        21 ~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~--~i~-~~~-----~--~~~~~~   89 (283)
                      +-|+++|.-|.. +...+|+|...|.+...|.-     ..+..|+.++|.|.+.|.|  +|. +..     .  ...|..
T Consensus       589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~d-----ltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~  663 (873)
T KOG4194|consen  589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-----LTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH  663 (873)
T ss_pred             EEEEEecccCcchhheeEEEeeccCccccCccc-----ceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee
Confidence            459999999986 77888999886655444432     2477888999999999999  554 111     1  112333


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecC-CEEEE
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKW  167 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W  167 (283)
                      +..  ..-.+.|.|++.+|+|.|+|.|.|..| .+....+.+...|.+..+..+..+..|+++.|.|...+.|. |.+.|
T Consensus       664 Vmp--edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W  741 (873)
T KOG4194|consen  664 VMP--EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW  741 (873)
T ss_pred             ecC--CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence            333  344678999999999999999999998 46666777888888998999999999999999999999877 99999


Q ss_pred             EeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        168 FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       168 ~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|+++++.-..+..+.  ....-|.+.....+|+|.|+|...+..|.......+.+..
T Consensus       742 ~k~d~pil~t~rh~f~--d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  742 FKEDKPILITERHTFP--DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             cCCCCceEEeecccCC--CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence            9999887544433222  2223478888889999999999999988876666555543

>KOG4222|consensus

Probab=99.85  E-value=5.5e-21  Score=171.72  Aligned_cols=246  Identities=16%  Similarity=0.191  Sum_probs=191.0

Q ss_pred             eEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEee-----cCCCEEEEEc
Q psy14060         21 KSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKIT-----ATETTEMEHK   93 (283)
Q Consensus        21 ~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~-----~~~~~~~~~~   93 (283)
                      +.|+|+|-.|.. +....|.|.+.+....+|...     .+.+|+.+.|.|.+.|+|... ++..     ...++.+.. 
T Consensus       202 Y~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~-----~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~-  275 (1281)
T KOG4222|consen  202 YACVATNMVGERESIPARLSVQEKPWFWKRPKDL-----AVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD-  275 (1281)
T ss_pred             eeeeecccccccccccceeeeccCCccccccccc-----eeecccccccccccCCCCCCceeeeccCCCCCccceeeee-
Confidence            578999999987 555778888876655555433     366778899999999999444 2222     234555553 


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF  172 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~  172 (283)
                       .+.+|.|.+++..|.|.|.|.+.|..+ ......+++..+|.|...+.+..+..|..++|.|.+.|.|.|.+.|.+.+.
T Consensus       276 -d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~  354 (1281)
T KOG4222|consen  276 -DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGS  354 (1281)
T ss_pred             -ccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCc
Confidence             457899999999999999999999988 566667888999999999999999999999999999999999999999875


Q ss_pred             ecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCC
Q psy14060        173 PIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS  244 (283)
Q Consensus       173 ~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~  244 (283)
                      .-.        ...+..+...+   +|.|.++...|.|.|.|...+..+.....+.+.+.......   ..+|.+...+.
T Consensus       355 q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~---rPpp~i~~g~~  428 (1281)
T KOG4222|consen  355 QDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDS---RPPPIIEQGPA  428 (1281)
T ss_pred             ceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccC---CCCceeeeccc
Confidence            421        12233333333   69999999999999999998888887777666655421110   13566777788


Q ss_pred             ceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        245 SAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       245 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .+++.+|..+.|.|.+.|.|.|.+.|+++|-.+..
T Consensus       429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~  463 (1281)
T KOG4222|consen  429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMN  463 (1281)
T ss_pred             ccccccCcccccChhhhCCCCCCchhhhccccccc
Confidence            88888999999999999999999999999866543

>KOG4221|consensus

Probab=99.83  E-value=8.6e-20  Score=165.06  Aligned_cols=253  Identities=17%  Similarity=0.156  Sum_probs=175.9

Q ss_pred             CcceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEccCccce-EEeecCCCEEEEE--
Q psy14060         18 NILKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEH--   92 (283)
Q Consensus        18 ~~~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~--   92 (283)
                      .=.+.|.|+|...+. +-...|.|...+.......|...+. ..+..|+.+.|+|.+.|.|... +|+..+..+.++.  
T Consensus       205 ~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~r  284 (1381)
T KOG4221|consen  205 TGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYR  284 (1381)
T ss_pred             CceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceE
Confidence            345789999976654 5556778876555444444443322 2477789999999999999433 5555443333321  


Q ss_pred             --cCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060         93 --KGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR  169 (283)
Q Consensus        93 --~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k  169 (283)
                        -.+...|.|.+++..|+|.|+|.|.|... ..+...+.+..+|.|+..+..+...++..+.|.|.+.|.|.|.+.|||
T Consensus       285 ivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k  364 (1381)
T KOG4221|consen  285 IVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK  364 (1381)
T ss_pred             EEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence              11356789999999999999999999543 334456777778999999999999999999999999999999999999


Q ss_pred             CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEc
Q psy14060        170 EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN  249 (283)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~  249 (283)
                      +|..+.++.++++...+.   |.|..+...|.|.|.|.+.|..|.....+.+.+.......    ....+...+.++.+.
T Consensus       365 Ngd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~----~s~~~~sap~~lv~~  437 (1381)
T KOG4221|consen  365 NGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASA----SSDLLPSAPRDLVAN  437 (1381)
T ss_pred             cCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCccc----ccCccccCCcceecc
Confidence            999888777777765544   8888888999999999999999999988888655321111    112222233333333


Q ss_pred             CCCeEEEEEEE-----EeeCCCeeEEee-CCEEe
Q psy14060        250 VGQLARFDAKI-----SATKPLDVYWLK-VSSLS  277 (283)
Q Consensus       250 ~g~~v~L~C~~-----~g~p~~~v~W~~-~g~~l  277 (283)
                      .-.+..+.|..     .+.+.+.++|++ ++...
T Consensus       438 ~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~  471 (1381)
T KOG4221|consen  438 LVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV  471 (1381)
T ss_pred             cccceeEEEeecCccccCCCcceEEEEEecCCch
Confidence            33343444443     233556788875 44443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.81  E-value=9.6e-18  Score=139.94  Aligned_cols=188  Identities=11%  Similarity=0.055  Sum_probs=124.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-----ccCccce-EEee----cCCCEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-----KGDKEIV-RKIT----ATETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-----~g~~~i~-~~~~----~~~~~~   89 (283)
                      .+.|+|.|..|..+....|.|.........  +.. ....+.+|..+.|.|..     .+++.+. .|..    ...++.
T Consensus        96 ~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~--~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~  172 (326)
T PHA02785         96 IYICITKNETYCDMMSLNLTIVSVSESNID--LIS-YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLK  172 (326)
T ss_pred             EEEEEEECCCcceEEEEEEEEEecCCCccc--eee-ccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceE
Confidence            488999999998888888888764221111  111 12236678889999972     3455332 3321    122322


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee-----eeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeec
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYYALSD-----LSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDP  161 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-----~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p  161 (283)
                      ..   ....|.|.+++.+|+|.|+|.+.|..+...     ...+.+   ..||.+ ..+....+..|+.+.|.|.+.|.|
T Consensus       173 ~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P  248 (326)
T PHA02785        173 QR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRP  248 (326)
T ss_pred             ec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCC
Confidence            21   234799999999999999999998766321     112222   234443 345667788899999999999887


Q ss_pred             C---CEEEEEeCCEecCCCC---CeEEEEeC----------CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        162 L---PTIKWFREDFPITSSP---DFQIHTFS----------TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       162 ~---~~~~W~k~~~~~~~~~---~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .   +.+.|++||..+....   ..++....          ....|.|.++..+|.|.|+|.|.|..+.
T Consensus       249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            6   4899999999875421   11211111          1357999999999999999999998744

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.79  E-value=9.2e-18  Score=131.98  Aligned_cols=109  Identities=11%  Similarity=0.093  Sum_probs=83.2

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEecceee-eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-----ecCCEEEEEe
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYALS-DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-----DPLPTIKWFR  169 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~~~W~k  169 (283)
                      ...|.|.+++.+|+|.|+|.+.|..+.. ....+.+..+      ..+..+..|+.+.|.|.+.+     .|.|.++|+|
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK  170 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK  170 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence            4589999999999999999999977642 2222333211      23456778999999999853     3578999999


Q ss_pred             CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        170 EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ++..+....++.+..  ....|.|.++..+|+|.|+|.+....
T Consensus       171 ng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        171 NGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            999987666655432  33479999999999999999998764

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.77  E-value=1.8e-17  Score=113.60  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |.|...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            56777888899999999999999999999999999999999877777777767778899999999999999999999999


Q ss_pred             eeEEEEEEEEEec
Q psy14060        214 KAKCSANLVVEEK  226 (283)
Q Consensus       214 ~~~~~~~l~v~~~  226 (283)
                      ...+.+.|.|.++
T Consensus        81 ~~~~~~~l~V~~~   93 (98)
T cd05762          81 SRQAQVNLTVVDK   93 (98)
T ss_pred             ceeEEEEEEEecC
Confidence            9999999999874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=6.5e-16  Score=104.96  Aligned_cols=90  Identities=34%  Similarity=0.540  Sum_probs=79.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .||.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+......+.|.|.++..+|+|.|.|.+.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            36778888888999999999999999999999999999999887767777776666778999999999999999999999


Q ss_pred             CceeEEEEEE
Q psy14060        212 GGKAKCSANL  221 (283)
Q Consensus       212 ~g~~~~~~~l  221 (283)
                      .|.....+.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9988877665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.69  E-value=3.8e-16  Score=104.96  Aligned_cols=87  Identities=25%  Similarity=0.413  Sum_probs=74.6

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.++|+|++..+....++  ..  ....|.|.++..+|+|.|.|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SM--SGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ec--CCCEEEECcCChhhCEEEEEEEEcCC
Confidence            577888889999999999999999999999999999999877654322  22  22369999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy14060        213 GKAKCSANLVV  223 (283)
Q Consensus       213 g~~~~~~~l~v  223 (283)
                      |.....+.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99998888876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.68  E-value=1.7e-15  Score=102.56  Aligned_cols=90  Identities=38%  Similarity=0.646  Sum_probs=83.5

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |.|...+.+..+..|+++.|.|.+.+.|.+.+.|++++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            56778888999999999999999999999999999999999988888888888899999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy14060        214 KAKCSANLVV  223 (283)
Q Consensus       214 ~~~~~~~l~v  223 (283)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9998888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.66  E-value=3.6e-15  Score=99.63  Aligned_cols=82  Identities=23%  Similarity=0.447  Sum_probs=71.2

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|.......
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            457889999999999999999999999999998653 4566666666778999999999999999999999999888777


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=3.3e-15  Score=101.42  Aligned_cols=84  Identities=20%  Similarity=0.397  Sum_probs=71.6

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      +....+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+... +....|.|.++..+|+|.|+|.|.|..|.....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            3456788999999999999999999999999999877666666544 345679999999999999999999999998887


Q ss_pred             EEEEE
Q psy14060        219 ANLVV  223 (283)
Q Consensus       219 ~~l~v  223 (283)
                      +.+.|
T Consensus        88 ~~v~v   92 (92)
T cd05737          88 VTVSV   92 (92)
T ss_pred             EEEeC
Confidence            77653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.64  E-value=3.5e-15  Score=96.64  Aligned_cols=73  Identities=26%  Similarity=0.436  Sum_probs=61.8

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999998874 3456555433 3357999999999999999999999999999988864

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.64  E-value=5.2e-15  Score=116.45  Aligned_cols=124  Identities=13%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             CceeecCCCcEEEEEEEeeec-----------CCEEEEEeCCEec--CC-CCC---eEEE---EeCCEEEEEEcCCCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP-----------LPTIKWFREDFPI--TS-SPD---FQIH---TFSTKSILIMRQVFMED  200 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p-----------~~~~~W~k~~~~~--~~-~~~---~~~~---~~~~~~~l~i~~~~~~d  200 (283)
                      ....+.+|+++.|.|.+.++|           .+.+.|+|++...  .. +.+   ..+.   ...+...|.|.++..+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456788999999999987644           3589999987642  11 111   0000   01224579999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-----eeCCCeeEEeeCCE
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-----ATKPLDVYWLKVSS  275 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-----g~p~~~v~W~~~g~  275 (283)
                      +|.|.|.+.|..+.......|.|..          ++      .+..+.+|+.+.|.|.+.     +.|.|+++|+|||+
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~----------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~  173 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS----------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN  173 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec----------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence            9999999999888877777777753          11      234567899999999985     34578999999999


Q ss_pred             EecCC
Q psy14060        276 LSDVK  280 (283)
Q Consensus       276 ~l~~~  280 (283)
                      +|...
T Consensus       174 ~l~~~  178 (227)
T PHA02826        174 IVLYT  178 (227)
T ss_pred             ECCCC
Confidence            98643

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.63  E-value=1.1e-14  Score=98.39  Aligned_cols=85  Identities=20%  Similarity=0.303  Sum_probs=70.8

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++..+|.|.|.|.|.|..|.....
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            44556688999999999999999999999999998765444333333456689999999999999999999999998888


Q ss_pred             EEEEE
Q psy14060        219 ANLVV  223 (283)
Q Consensus       219 ~~l~v  223 (283)
                      +.|.|
T Consensus        86 ~~L~v   90 (90)
T cd04972          86 VQVTV   90 (90)
T ss_pred             EEEeC
Confidence            87754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.63  E-value=3.1e-15  Score=96.58  Aligned_cols=73  Identities=22%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.+.|+|++..+....++.+...   .+|.|.++..+|.|.|.|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999998876666665433   36999999999999999999999999999888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.63  E-value=8.5e-15  Score=100.51  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             CceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ..+.+..|+++.|.|.+.| .|.|.+.|+|+|..+.......+....     ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567889999999999999 889999999999999765443333221     2467999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy14060        215 AKCSANLVVE  224 (283)
Q Consensus       215 ~~~~~~l~v~  224 (283)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.62  E-value=1.2e-14  Score=94.51  Aligned_cols=74  Identities=28%  Similarity=0.536  Sum_probs=65.5

Q ss_pred             cEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       150 ~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      .+.|.|.+.|.|.|.+.|+|++..+....++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999999999999999999987766777766667788999999999999999999999999888877754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.62  E-value=4.4e-15  Score=96.49  Aligned_cols=74  Identities=24%  Similarity=0.384  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +|+.+.|.|.+.|.|.|.++|+|++..+....++.+..   ..+|.|.++..+|.|.|.|.|.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58899999999999999999999999887655444332   236999999999999999999999999988888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=2e-14  Score=98.60  Aligned_cols=91  Identities=24%  Similarity=0.334  Sum_probs=71.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-----PDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+...     .++.+......+.|.|.++..+|+|.|.|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            466666655555666899999999999999999999998776432     123333334456899999999999999999


Q ss_pred             EEeCCceeEEEEEEEE
Q psy14060        208 AENRGGKAKCSANLVV  223 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v  223 (283)
                      |.|..|.....+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999988888764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.61  E-value=8.1e-15  Score=97.92  Aligned_cols=84  Identities=27%  Similarity=0.506  Sum_probs=71.1

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      |...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+....++...    ...|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            345667788999999999999999999999999999998765554432    2369999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy14060        216 KCSANLVV  223 (283)
Q Consensus       216 ~~~~~l~v  223 (283)
                      .+++.|.|
T Consensus        78 ~~~~~l~V   85 (85)
T cd05728          78 YASAELAV   85 (85)
T ss_pred             EEEEEEEC
Confidence            88887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.61  E-value=1.7e-14  Score=97.08  Aligned_cols=87  Identities=25%  Similarity=0.415  Sum_probs=71.9

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |+.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+.......    .....|.|.++..+|+|.|+|.+.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence            4556667778888999999999999999999999999887665433222    123479999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy14060        213 GKAKCSANLVV  223 (283)
Q Consensus       213 g~~~~~~~l~v  223 (283)
                      |.....+.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            99988888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.61  E-value=1.4e-14  Score=93.91  Aligned_cols=73  Identities=30%  Similarity=0.500  Sum_probs=61.1

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+... .++.+...+ ....|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            479999999999999999999988653 345554433 2346999999999999999999999999999888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=2.1e-14  Score=92.45  Aligned_cols=71  Identities=32%  Similarity=0.527  Sum_probs=60.9

Q ss_pred             cEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       150 ~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      .+.|.|.+.|.|.|.++|+|++..+....++.+...+   .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999988776666655443   3788899999999999999999999998888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.60  E-value=2.5e-14  Score=98.32  Aligned_cols=90  Identities=22%  Similarity=0.392  Sum_probs=70.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEecCC-----CCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPITS-----SPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +|.+. .+.+..+.+|+.++|.|.+.|.|.|.+.|+|+  +..+..     ..++.+........|.|.++..+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            56554 46778899999999999999999999999994  333321     12445444444568999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEE
Q psy14060        206 VIAENRGGKAKCSANLVV  223 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888777753

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.60  E-value=3.6e-14  Score=97.00  Aligned_cols=82  Identities=24%  Similarity=0.359  Sum_probs=68.9

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++..  ....+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            346789999999999999999999999999988654 33322  233457999999999999999999999999998888


Q ss_pred             EEEEe
Q psy14060        221 LVVEE  225 (283)
Q Consensus       221 l~v~~  225 (283)
                      |.|..
T Consensus        90 L~V~~   94 (95)
T cd05730          90 LKVFA   94 (95)
T ss_pred             EEEEe
Confidence            88763

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.59  E-value=2.4e-14  Score=98.43  Aligned_cols=83  Identities=20%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE------eCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT------FSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|++.++..........      ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            4577888999999999999999999999999987654322211      1123579999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy14060        216 KCSANLVVE  224 (283)
Q Consensus       216 ~~~~~l~v~  224 (283)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            988888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.59  E-value=3.3e-14  Score=93.33  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            6789999999999999999999998887766776666666678999999999999999999999998877655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.58  E-value=5.5e-14  Score=95.67  Aligned_cols=86  Identities=15%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecC-CEEEEEe-CCEecCC-CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCC-
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFR-EDFPITS-SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRG-  212 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~-  212 (283)
                      ..+....+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+... ...++|.|.++..+|+|.|+|.|.|.. 
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            3456667899999999999999985 7999998 6766554 334444332 235689999999999999999999997 


Q ss_pred             ceeEEEEEEEE
Q psy14060        213 GKAKCSANLVV  223 (283)
Q Consensus       213 g~~~~~~~l~v  223 (283)
                      |....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            77888777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.58  E-value=8.2e-14  Score=93.89  Aligned_cols=85  Identities=19%  Similarity=0.328  Sum_probs=69.1

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ...+.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            34566788999999999999999887 999998 4667766667777666666789999999999999999999999875


Q ss_pred             E-EEEEEE
Q psy14060        216 K-CSANLV  222 (283)
Q Consensus       216 ~-~~~~l~  222 (283)
                      . .+..|.
T Consensus        83 ~~~~i~l~   90 (92)
T cd05866          83 QEATVVLE   90 (92)
T ss_pred             EEEEEEEE
Confidence            4 344443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.58  E-value=6.7e-14  Score=94.84  Aligned_cols=84  Identities=21%  Similarity=0.370  Sum_probs=70.4

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.||+++..+....++.+.... ....|.|.++..+|+|.|+|.|.|..|.....
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            44678899999999999999999999999999988766665554332 34579999999999999999999999998887


Q ss_pred             EEEEE
Q psy14060        219 ANLVV  223 (283)
Q Consensus       219 ~~l~v  223 (283)
                      +.|.|
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            77653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.58  E-value=4.8e-14  Score=96.65  Aligned_cols=90  Identities=28%  Similarity=0.419  Sum_probs=71.3

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-----PDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+......+.|.|.++..+|+|.|.|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            45554 455678899999999999999999999999998665432     123333334456899999999999999999


Q ss_pred             EEeCCceeEEEEEEEE
Q psy14060        208 AENRGGKAKCSANLVV  223 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v  223 (283)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999888777754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.58  E-value=4.3e-14  Score=91.89  Aligned_cols=73  Identities=26%  Similarity=0.411  Sum_probs=60.9

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .....|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999998874 345555433 23457999999999999999999999999998888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=8.4e-14  Score=93.48  Aligned_cols=79  Identities=24%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEe----CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTF----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      |+.+.|.|.+.|.|.+.+.|+|++..+... .++.+...    ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            688999999999999999999999887543 35544321    2236799999999999999999999999999999999


Q ss_pred             EEec
Q psy14060        223 VEEK  226 (283)
Q Consensus       223 v~~~  226 (283)
                      |..+
T Consensus        81 V~~~   84 (88)
T cd05735          81 VQEP   84 (88)
T ss_pred             EeCC
Confidence            9863

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.57  E-value=3.1e-14  Score=89.74  Aligned_cols=65  Identities=15%  Similarity=0.375  Sum_probs=55.4

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.++|||+|..+...        .....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            479999999999999999999988632        13347999999999999999999999998777766655

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.57  E-value=6.4e-14  Score=91.37  Aligned_cols=74  Identities=23%  Similarity=0.357  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.++|+|++..+...... .....  ...|.|.++..+|.|.|.|.|.|..|...+++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999988643221 11122  236899999999999999999999999999998876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=8.5e-14  Score=90.90  Aligned_cols=74  Identities=28%  Similarity=0.476  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.++|+|++..+...... ....  ....|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999988653211 1211  1236999999999999999999999999988888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.55  E-value=4.8e-14  Score=91.33  Aligned_cols=73  Identities=29%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.++|+|++..+....++.+...   .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999998877666655332   35999999999999999999999999998888764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.55  E-value=1.3e-13  Score=92.20  Aligned_cols=81  Identities=21%  Similarity=0.370  Sum_probs=66.2

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      ..+..|+.+.|.|.+.|.|.|.+.|+|++..+...... ..........|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            35778999999999999999999999999998764432 12222334579999999999999999999999998888877


Q ss_pred             EE
Q psy14060        222 VV  223 (283)
Q Consensus       222 ~v  223 (283)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.55  E-value=9e-14  Score=90.90  Aligned_cols=75  Identities=28%  Similarity=0.373  Sum_probs=62.2

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... .........|.|.++..+|.|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999988654332 112223357999999999999999999999999998888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.54  E-value=2e-13  Score=94.31  Aligned_cols=91  Identities=23%  Similarity=0.397  Sum_probs=67.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC----CCeE-EEEeCCEEEEEEc--CCCCCCCEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----PDFQ-IHTFSTKSILIMR--QVFMEDSGVFA  205 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~----~~~~-~~~~~~~~~l~i~--~~~~~d~G~Y~  205 (283)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+...    .... ....+....+.+.  .+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            577888888899999999999999999999999999999987651    1112 2222332333333  34689999999


Q ss_pred             EEEEeCCce-eEEEEEEEE
Q psy14060        206 VIAENRGGK-AKCSANLVV  223 (283)
Q Consensus       206 C~a~n~~g~-~~~~~~l~v  223 (283)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 555566654

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.52  E-value=3.7e-13  Score=89.66  Aligned_cols=77  Identities=23%  Similarity=0.374  Sum_probs=62.5

Q ss_pred             CcEEEEEEEeeecCC--EEEEEeCCEecCCC---CCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        149 DQARFEVEFDGDPLP--TIKWFREDFPITSS---PDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       149 ~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      +.+.|.|.+.|.|.|  .++|++++..+...   .++.+ ........|.|.+++..|+|.|+|.|.|..|...+.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999887  58999999887542   23322 2222346899999999999999999999999999999999


Q ss_pred             EEe
Q psy14060        223 VEE  225 (283)
Q Consensus       223 v~~  225 (283)
                      |..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            985

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=8.2e-14  Score=89.15  Aligned_cols=68  Identities=32%  Similarity=0.533  Sum_probs=58.2

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      +.|.|.+.|.|.|.+.|+|++..+....++.+..   ...|.|.++..+|+|.|+|.|.|..|....+..|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4799999999999999999999887665655433   2369999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.51  E-value=3.9e-13  Score=88.46  Aligned_cols=71  Identities=17%  Similarity=0.312  Sum_probs=57.6

Q ss_pred             EEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-------STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       152 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      .|.|.+.|.|.|.++|+|+|..+....+......       .....|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            4789999999999999999999976654332211       2245799999999999999999999999988776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.51  E-value=8.4e-13  Score=89.76  Aligned_cols=82  Identities=24%  Similarity=0.472  Sum_probs=62.9

Q ss_pred             CeEEecCCceeec---CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060        134 PVFTKKIQPCRAF---EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE  209 (283)
Q Consensus       134 p~~~~~~~~~~~~---~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  209 (283)
                      |.|+..+.+..+.   .|+.+.|.|.+.|.|.|.++|+|++..+............  ..|.|.++. .+|.|.|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence            5667777766543   4689999999999999999999999988654333332222  358888875 699999999999


Q ss_pred             eCCceeEE
Q psy14060        210 NRGGKAKC  217 (283)
Q Consensus       210 n~~g~~~~  217 (283)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.50  E-value=1.9e-13  Score=87.14  Aligned_cols=68  Identities=21%  Similarity=0.386  Sum_probs=55.8

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+.....  +.   ....|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FK---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--Ec---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            36899999999999999999999875432  21   2346999999999999999999999998776666554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.50  E-value=2.5e-13  Score=87.28  Aligned_cols=69  Identities=22%  Similarity=0.436  Sum_probs=57.3

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+....++.    .....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4689999999999999999999987653322    23357999999999999999999999998777766654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.50  E-value=3.7e-13  Score=88.01  Aligned_cols=72  Identities=28%  Similarity=0.565  Sum_probs=57.3

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      ++|.|.+.|.|.|.+.|+|++..+.... .+.+.  .....|.|.++..+|+|.|.|.|.|..|...++..+.+.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            4799999999999999999999886543 33332  223479999999999999999999999987665555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.50  E-value=3.3e-13  Score=88.73  Aligned_cols=78  Identities=15%  Similarity=0.342  Sum_probs=64.2

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      +...+..|+.+.|.|.+.+. .+.+.|+|+|..+....++.+.  +  ..|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            45678899999999999985 6789999999998766555543  2  26999999999999999999999888776666


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      +.|
T Consensus        77 v~V   79 (79)
T cd04973          77 VNV   79 (79)
T ss_pred             EeC
Confidence            543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.49  E-value=3.8e-13  Score=87.50  Aligned_cols=71  Identities=21%  Similarity=0.396  Sum_probs=56.6

Q ss_pred             EEEEEEeeecCCEEEEEeCCEecCCCCCeE--EEE---eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQ--IHT---FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       152 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~--~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      .|.|.+.|.|.|.++|||++..+....+..  +..   ......|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            378999999999999999999997655432  211   12345799999999999999999999999877665543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.48  E-value=5.1e-13  Score=87.25  Aligned_cols=74  Identities=30%  Similarity=0.500  Sum_probs=61.7

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +.|.|.+.|.|.|.+.|+|++..+......++........|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999998875543333333444579999999999999999999999999988888876

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=2.2e-13  Score=87.60  Aligned_cols=70  Identities=26%  Similarity=0.432  Sum_probs=57.4

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+.... ...  ......|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999999999999999988765432 211  223457999999999999999999999999888887766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.48  E-value=2.1e-12  Score=87.89  Aligned_cols=86  Identities=22%  Similarity=0.342  Sum_probs=63.8

Q ss_pred             CeEEecCCceeecCC---CcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060        134 PVFTKKIQPCRAFEQ---DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE  209 (283)
Q Consensus       134 p~~~~~~~~~~~~~g---~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  209 (283)
                      |.|...+....+.+|   +.+.|.|.+.|.|.|.++|++++..+............  ..|.|.+.. ..|.|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEE
Confidence            567777777766555   57999999999999999999999988643322222222  358887755 599999999999


Q ss_pred             eCCceeEE-EEEE
Q psy14060        210 NRGGKAKC-SANL  221 (283)
Q Consensus       210 n~~g~~~~-~~~l  221 (283)
                      |..|...+ .+.|
T Consensus        80 N~~G~~~s~~a~l   92 (94)
T cd05850          80 NRCGTVVSREANL   92 (94)
T ss_pred             cCcCcEEEEEEEE
Confidence            99998655 3443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.48  E-value=1.7e-12  Score=90.72  Aligned_cols=79  Identities=23%  Similarity=0.351  Sum_probs=64.0

Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEe----CCEEEEEEcCCC-CCCCEEEEEEEEeCCceeEEEEE
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF----STKSILIMRQVF-MEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~----~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      .|..+.|.|.+.|.|.+.+.|+|++..+.. ..++.+...    ...+.|.|.++. .+|.|.|+|.|.|..|.......
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            467899999999999999999999998864 234433221    124579999987 59999999999999999988888


Q ss_pred             EEEEe
Q psy14060        221 LVVEE  225 (283)
Q Consensus       221 l~v~~  225 (283)
                      |.+..
T Consensus       102 L~~~~  106 (109)
T cd05773         102 LVSTS  106 (109)
T ss_pred             EEecC
Confidence            88875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.48  E-value=1.3e-12  Score=88.55  Aligned_cols=84  Identities=21%  Similarity=0.398  Sum_probs=62.9

Q ss_pred             CeEEecCCceeecCC---CcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEE
Q psy14060        134 PVFTKKIQPCRAFEQ---DQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIA  208 (283)
Q Consensus       134 p~~~~~~~~~~~~~g---~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a  208 (283)
                      |.|...+....+.++   ..+.|.|.+.|.|.|.++|+|++..+.. ..++.+.  +  ..|.|.++. .+|+|.|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~A   77 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCIV   77 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEEE
Confidence            667766666655443   4799999999999999999999988753 2333221  2  368998875 68999999999


Q ss_pred             EeCCceeEE-EEEE
Q psy14060        209 ENRGGKAKC-SANL  221 (283)
Q Consensus       209 ~n~~g~~~~-~~~l  221 (283)
                      .|..|...+ .+.|
T Consensus        78 ~N~~G~~~s~~a~l   91 (93)
T cd05849          78 SNIYGKVRSREATL   91 (93)
T ss_pred             EeCcceEEEccEEE
Confidence            999998654 3443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.47  E-value=3.8e-13  Score=87.60  Aligned_cols=71  Identities=27%  Similarity=0.506  Sum_probs=56.1

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCC---CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITS---SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.++|+|++.....   ..++.+.  .....|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            36899999999999999999864322   1233332  22346999999999999999999999999888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.47  E-value=8.6e-13  Score=84.13  Aligned_cols=68  Identities=16%  Similarity=0.392  Sum_probs=55.2

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      |+.+.|.|.+.|.|.|.++|+|++..+....++..    ....|.|.++  .|+|.|+|.|.|..|...+++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999998765443322    2235888887  47999999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.47  E-value=1.1e-12  Score=88.47  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SA  219 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~  219 (283)
                      ..+.+.+|+.++|.|.+.|. .|.+.|+|++..+... ++.+.  .....|.|.++..+|+|.|.|.|.|..|...+ .+
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            45688899999999999999 9999999999887643 33332  23347999999999999999999999998554 45


Q ss_pred             EEEE
Q psy14060        220 NLVV  223 (283)
Q Consensus       220 ~l~v  223 (283)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            5554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.46  E-value=9.3e-13  Score=87.38  Aligned_cols=78  Identities=22%  Similarity=0.374  Sum_probs=62.8

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      .....|+.+.|.|.+.|.|.|.+.|++++..+.......  .......|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            345679999999999999999999999998775433221  122346799999999999999999999999877776664

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.46  E-value=2.5e-12  Score=88.31  Aligned_cols=88  Identities=23%  Similarity=0.281  Sum_probs=69.6

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCC--CCeEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSS--PDFQIHTF----STKSILIMRQVFMED-SGVF  204 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y  204 (283)
                      ||.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...    +..+.|.|.++..+| .|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            55554 4456778999999999999999999 69999999887653  45655543    234579999999955 8999


Q ss_pred             EEEEEeCCceeEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANL  221 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l  221 (283)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998776665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=5.6e-13  Score=90.07  Aligned_cols=75  Identities=27%  Similarity=0.376  Sum_probs=61.6

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      |+.+.|.|.+.|.|.|.+.|+|++..+.        ...++.+..   ...|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            6789999999999999999999876431        122333322   23699999999999999999999999999999


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus        78 ~l~V~~   83 (90)
T cd05726          78 YLEVTD   83 (90)
T ss_pred             EEEEee
Confidence            999986

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=8.3e-13  Score=87.20  Aligned_cols=77  Identities=14%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             CcEEEEEEEeee--cCCEEEEEeCCEecCC---CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        149 DQARFEVEFDGD--PLPTIKWFREDFPITS---SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       149 ~~v~l~C~~~g~--p~~~~~W~k~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      +++.|.|.+.+.  +.+.+.|+++|..+..   ..++.+... .....|.|.++..+|+|.|+|.|.|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468999999774  4678999999999862   223433221 2234699999999999999999999999999999999


Q ss_pred             EEe
Q psy14060        223 VEE  225 (283)
Q Consensus       223 v~~  225 (283)
                      |..
T Consensus        81 V~~   83 (85)
T cd05853          81 VRG   83 (85)
T ss_pred             Eec
Confidence            985

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=7.4e-13  Score=86.02  Aligned_cols=73  Identities=26%  Similarity=0.455  Sum_probs=58.6

Q ss_pred             CCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+.....   ..+|.|..+..+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 566665544433322   236999999999999999999999999887777654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.45  E-value=1.4e-12  Score=87.15  Aligned_cols=77  Identities=18%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             CcEEEEEEEeeecCC--EEEEEeCCEecCCCC---CeE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        149 DQARFEVEFDGDPLP--TIKWFREDFPITSSP---DFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       149 ~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      +++.|.|.+.|.|.|  .+.|++++..+....   .+. .........|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999998877  679999998875321   222 21222345799999999999999999999999999999999


Q ss_pred             EEe
Q psy14060        223 VEE  225 (283)
Q Consensus       223 v~~  225 (283)
                      |..
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            985

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.45  E-value=9.9e-13  Score=88.80  Aligned_cols=76  Identities=24%  Similarity=0.360  Sum_probs=58.4

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeC----CEecCCCCC--eEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFRE----DFPITSSPD--FQIHTF-------STKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      |+.+.|.|.+.|.|.|.++|+|+    +..+.....  ..+...       .....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333332211  121111       12357999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14060        215 AKCSANLVV  223 (283)
Q Consensus       215 ~~~~~~l~v  223 (283)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.45  E-value=5.4e-13  Score=85.39  Aligned_cols=69  Identities=36%  Similarity=0.551  Sum_probs=56.9

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+.. .++.+..   ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999877654 3444432   236999999999999999999999999888877754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.45  E-value=3.8e-12  Score=86.20  Aligned_cols=84  Identities=18%  Similarity=0.334  Sum_probs=63.5

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeCCce-
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENRGGK-  214 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-  214 (283)
                      ..+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....++.+.. ....++|.|.++..+|+|.|+|.|.|..|. 
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            445667899999999999999986 4999998 565555444444333 234568999999999999999999998654 


Q ss_pred             eEEEEEEE
Q psy14060        215 AKCSANLV  222 (283)
Q Consensus       215 ~~~~~~l~  222 (283)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            45555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.44  E-value=3.7e-12  Score=93.40  Aligned_cols=115  Identities=13%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             EEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEec
Q psy14060         98 ERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPI  174 (283)
Q Consensus        98 ~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~  174 (283)
                      +|.|.+++.+|+|.|.|.+.+..+ ......+.+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|++++...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~   81 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD   81 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence            689999999999999999987655 334455666778887766665555578899999999985 54 489999997542


Q ss_pred             CC----CCCe-----EEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        175 TS----SPDF-----QIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       175 ~~----~~~~-----~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..    ....     ....++.   .+.|.+......+.+.|+|.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            11    0111     1111111   2356666655566779999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.43  E-value=1.6e-12  Score=85.39  Aligned_cols=73  Identities=19%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ...+.+..+..|+.+.|.|.+.|.|.| .+.|+|++..+....      ....+.|.|..+  .|.|.|.|.|.|..|..
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            445677889999999999999999999 799999999885411      112246888876  47899999999999975


Q ss_pred             EE
Q psy14060        216 KC  217 (283)
Q Consensus       216 ~~  217 (283)
                      .+
T Consensus        74 ~s   75 (81)
T cd05749          74 TS   75 (81)
T ss_pred             Ee
Confidence            54

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.43  E-value=1.3e-12  Score=84.69  Aligned_cols=70  Identities=26%  Similarity=0.476  Sum_probs=55.6

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  223 (283)
                      ++|.|.+.|.|.|.+.|+|++..+..  ..++...   ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999999999999998763  3343332   22359999999999999999999999984 45566655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.43  E-value=1.3e-12  Score=85.19  Aligned_cols=70  Identities=23%  Similarity=0.353  Sum_probs=57.0

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCe---EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDF---QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      +.|.|.+.| .|.|.+.|+|++..+......   .+........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            468999999 899999999999988754432   2333345678999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=1.5e-12  Score=83.89  Aligned_cols=70  Identities=23%  Similarity=0.317  Sum_probs=56.9

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      +.|.|.+.|.|.|.+.|+|++..+... +..  .......|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            478999999999999999998876543 222  1223457999999999999999999999999888777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=1.7e-12  Score=87.02  Aligned_cols=80  Identities=21%  Similarity=0.368  Sum_probs=63.7

Q ss_pred             CCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        140 IQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      +....+..|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.+..   ...|.|.++..+|+|.|+|.+.|..|...+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            456788899999999998 6889999999999998775 33443332   236999999999999999999999987644


Q ss_pred             -EEEEE
Q psy14060        218 -SANLV  222 (283)
Q Consensus       218 -~~~l~  222 (283)
                       .+.|.
T Consensus        80 ~~~~l~   85 (86)
T cd05724          80 AAARLS   85 (86)
T ss_pred             eeEEEE
Confidence             44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=8.1e-13  Score=89.60  Aligned_cols=80  Identities=20%  Similarity=0.296  Sum_probs=63.0

Q ss_pred             ceeecCCCcEEEEEEEee-----ecCCEEEEEeCCEecCCC--CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        142 PCRAFEQDQARFEVEFDG-----DPLPTIKWFREDFPITSS--PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g-----~p~~~~~W~k~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|||++..+...  ...++...  ...|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            456778999999999998     588999999998764321  12223222  246999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14060        215 AKCSANLVV  223 (283)
Q Consensus       215 ~~~~~~l~v  223 (283)
                      .+..+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            888887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.42  E-value=2.9e-12  Score=87.51  Aligned_cols=84  Identities=21%  Similarity=0.332  Sum_probs=62.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC--eEEEEeCCEEEEEEcCC-----CCCCCEEEEEEE
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--FQIHTFSTKSILIMRQV-----FMEDSGVFAVIA  208 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a  208 (283)
                      |...+.+..+..|+++.|.|.+.|.|.|.+.|+|++..+.....  +.+...+   .+.|.++     ...|.|.|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence            44566777888999999999999999999999999998875433  2222222   3555554     689999999999


Q ss_pred             EeC-CceeE-EEEEEE
Q psy14060        209 ENR-GGKAK-CSANLV  222 (283)
Q Consensus       209 ~n~-~g~~~-~~~~l~  222 (283)
                      .|. .|... ..+.|.
T Consensus        79 ~N~~~G~~~s~~~~l~   94 (95)
T cd05722          79 QNDSLGSIVSRTARLT   94 (95)
T ss_pred             ECCccCcEEEeeeEEe
Confidence            999 88763 345554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.42  E-value=1.6e-12  Score=87.78  Aligned_cols=76  Identities=24%  Similarity=0.406  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCC----EecCCC--CCeEEEE-------eCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFRED----FPITSS--PDFQIHT-------FSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      |+.+.|.|.+.|.|.|.++|+|++    ..+...  .......       ......|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    222211  1111111       122347999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14060        215 AKCSANLVV  223 (283)
Q Consensus       215 ~~~~~~l~v  223 (283)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.41  E-value=2.3e-12  Score=85.24  Aligned_cols=76  Identities=21%  Similarity=0.376  Sum_probs=56.4

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCE---e--cCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDF---P--ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~---~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .  +................|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999742   1  1111100001111235799999999999999999999999988888776


Q ss_pred             E
Q psy14060        223 V  223 (283)
Q Consensus       223 v  223 (283)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.37  E-value=3e-12  Score=83.69  Aligned_cols=67  Identities=21%  Similarity=0.335  Sum_probs=50.8

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEeCCceeEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM----EDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  217 (283)
                      +.|.|.+.|.|.|.++|+|++..+.......+........|.|..+..    +|+|.|.|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            478999999999999999999987543322233333345688887653    7899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.36  E-value=2.4e-11  Score=82.25  Aligned_cols=82  Identities=22%  Similarity=0.388  Sum_probs=59.7

Q ss_pred             CeEEecCCceeecC---CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060        134 PVFTKKIQPCRAFE---QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE  209 (283)
Q Consensus       134 p~~~~~~~~~~~~~---g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  209 (283)
                      |.|...+....+..   +..+.|.|.+.|.|.|.++|+|++..+............  ..|.|.++. .+|.|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence            55666666655433   457999999999999999999999988432222222222  258888776 489999999999


Q ss_pred             eCCceeEE
Q psy14060        210 NRGGKAKC  217 (283)
Q Consensus       210 n~~g~~~~  217 (283)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.35  E-value=9.2e-12  Score=79.59  Aligned_cols=68  Identities=16%  Similarity=0.364  Sum_probs=52.1

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      +.|.|.+.|.|.|.+.|+|++.++..... .....  ..+|.|.++..+|+|.|+|.+.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            36899999999999999999998875422 12222  2369999999999999999999986554444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.34  E-value=1.2e-11  Score=80.62  Aligned_cols=66  Identities=23%  Similarity=0.363  Sum_probs=49.3

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCC----CCCCEEEEEEEEeCCceeEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVF----MEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      +.|.|.+.|.|.|.++|+|++..+..  ..++.+  .....+|.|..+.    .+|.|.|.|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            46899999999999999999987643  333333  2233468887653    246999999999999976554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.34  E-value=8.5e-12  Score=81.40  Aligned_cols=68  Identities=21%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEeCCceeEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM----EDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      +.|.|.+.|.|.|.++|+|++..+.......+.......+|.|..+..    .|.|.|.|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            478999999999999999999987433222222222234566766654    37899999999999986653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.31  E-value=2.4e-11  Score=79.28  Aligned_cols=70  Identities=20%  Similarity=0.330  Sum_probs=54.4

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCC----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSS----PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      +.|.|.+.+ .|.+.+.||+++..+...    .++.+........|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999864 577899999999887532    1233333345578999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.31  E-value=2e-11  Score=81.27  Aligned_cols=76  Identities=12%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEeee--cCCEEEEEeCCEecCCCCC-----eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        148 QDQARFEVEFDGD--PLPTIKWFREDFPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       148 g~~v~l~C~~~g~--p~~~~~W~k~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      |+.+.|.|.+.+.  |.+.+.|++++..+.....     .........+.|.|.++..+|+|.|+|.+.|..+....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999998  7889999987765432111     00111123468999999999999999999999999888887


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.31  E-value=9.8e-12  Score=81.13  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      |.+...+....+.+|++++|.|.+.+.|. ..+.|+|++..+..          ....|.|.++ .+|+|.|+|.|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            45666777889999999999999998776 46999999988732          1235888888 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.30  E-value=3.5e-11  Score=79.93  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=55.5

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCC----CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc--eeEEEEEE
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSP----DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG--KAKCSANL  221 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l  221 (283)
                      |+++.|.|.+.+.|.+.+.|++.+.......    ...+......+.|.|.++..+|+|.|.|.+.|..+  ....+..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999998999999998765432211    11111112256899999999999999999999876  44555666


Q ss_pred             EEE
Q psy14060        222 VVE  224 (283)
Q Consensus       222 ~v~  224 (283)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.29  E-value=9.1e-11  Score=78.25  Aligned_cols=80  Identities=24%  Similarity=0.381  Sum_probs=63.5

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            3456799999999999999999999999988765433322 122334579999999999999999999999987777666


Q ss_pred             E
Q psy14060        222 V  222 (283)
Q Consensus       222 ~  222 (283)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            5

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.29  E-value=1.6e-10  Score=78.37  Aligned_cols=88  Identities=19%  Similarity=0.311  Sum_probs=68.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCC--CCCeEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITS--SPDFQIHTF----STKSILIMRQVFMED-SGVF  204 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~--~~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y  204 (283)
                      ||.+ .......+.+|+.+.|.|.+.+.|.| .+.|..++..+..  ..++.+...    +..+.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5655 45566788999999999999888887 5788877776654  346666554    367889999998877 7999


Q ss_pred             EEEEEeCCceeEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANL  221 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l  221 (283)
                      .|.|.|.+|.......|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.28  E-value=7.5e-11  Score=80.21  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--------ecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--------PITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--------~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +.++.+.+|+++.|.|.+.+.|.+.+.|++.+.        ......++..... ....+|.|.++..+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            456789999999999999999999999986322        2222345544322 3456899999999999999999987


Q ss_pred             CCceeEEEEEEEE
Q psy14060        211 RGGKAKCSANLVV  223 (283)
Q Consensus       211 ~~g~~~~~~~l~v  223 (283)
                      . ......+.|.|
T Consensus        84 ~-~~~~~~~~l~v   95 (95)
T cd07701          84 M-PVKTSKAYLTV   95 (95)
T ss_pred             e-cCccEEEEEEC
Confidence            4 33355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.27  E-value=3.4e-11  Score=79.18  Aligned_cols=69  Identities=25%  Similarity=0.341  Sum_probs=50.5

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEE
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANL  221 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  221 (283)
                      ++|.|.+.|.|.|.+.|++++....        ...++.+.   ...+|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4799999999999999999743221        12233322   22469999999999999999999999875 334444


Q ss_pred             E
Q psy14060        222 V  222 (283)
Q Consensus       222 ~  222 (283)
                      .
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=1.2e-10  Score=77.23  Aligned_cols=68  Identities=10%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |....+..|+++.|.|.+.+ +.+.+.|++++..+... .++.+ ..+   .|.|.+++.+|+|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            55678899999999999865 77899999999998765 33433 222   49999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.26  E-value=8.3e-11  Score=79.76  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+..+..|+++.|.|.+.+.|.+.+.|++++..+        ....++.+.... ...+|.|.++..+|.|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4678899999999999999999999999987532        112334333222 346899999999999999999976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.26  E-value=7e-11  Score=78.86  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             ecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..+....+..|+.++|.|.+.+ .|.+.+.|++++..+....    .  .....|.|.++..+|+|.|+|.+.|..|...
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence            3456678899999999999975 6788999999987654321    1  1234699999999999999999999999988


Q ss_pred             EEEEE
Q psy14060        217 CSANL  221 (283)
Q Consensus       217 ~~~~l  221 (283)
                      ..+.|
T Consensus        80 ~~~~l   84 (85)
T cd05754          80 ATATL   84 (85)
T ss_pred             EEEEE
Confidence            87765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.23  E-value=9.2e-11  Score=80.30  Aligned_cols=76  Identities=12%  Similarity=0.226  Sum_probs=57.9

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP  130 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~  130 (283)
                      .+..|+.+.|.|.+.|.|.++       +.+..+.++.+........|.|.++..+|+|.|+|.+.|..|. .....+.+
T Consensus        11 ~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V   90 (98)
T cd05762          11 KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV   90 (98)
T ss_pred             EEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence            477889999999999999544       3455556677766667789999999999999999999999994 33334444


Q ss_pred             CCCC
Q psy14060        131 AKPP  134 (283)
Q Consensus       131 ~~~p  134 (283)
                      ..+|
T Consensus        91 ~~~P   94 (98)
T cd05762          91 VDKP   94 (98)
T ss_pred             ecCC
Confidence            3333

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.21  E-value=1.1e-10  Score=78.66  Aligned_cols=82  Identities=17%  Similarity=0.266  Sum_probs=60.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC-ceeE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG-GKAK  216 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~  216 (283)
                      +....+..|+.+.|.|.+.+ |.+.+.|++++..+....  ..++...  ...|.|.++..+|+|.|.|.+.+.. +...
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            34567889999999999987 888999999988765432  1122221  2249999999999999999998764 3445


Q ss_pred             EEEEEEEE
Q psy14060        217 CSANLVVE  224 (283)
Q Consensus       217 ~~~~l~v~  224 (283)
                      .+..|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            55666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.21  E-value=1.3e-10  Score=85.20  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             EEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-Ce
Q psy14060        190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LD  267 (283)
Q Consensus       190 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~  267 (283)
                      +|.|.+++.+|.|.|.|.+.+..+.......|.|..          +|.+...+.......|+.+.|.|.+.|. |. +.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~   71 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQ   71 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeE
Confidence            589999999999999999999888888888888874          6777665555555578999999999985 54 38


Q ss_pred             eEEeeCCEE
Q psy14060        268 VYWLKVSSL  276 (283)
Q Consensus       268 v~W~~~g~~  276 (283)
                      |+|+++|..
T Consensus        72 i~W~~~g~~   80 (139)
T cd05771          72 VEWTREPPG   80 (139)
T ss_pred             EEEEECCCC
Confidence            999999854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG3515|consensus

Probab=99.20  E-value=5e-11  Score=106.22  Aligned_cols=212  Identities=11%  Similarity=0.082  Sum_probs=133.8

Q ss_pred             eeeecCcEEEEEEEccCccce--EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV--RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQKP  130 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~--~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~~  130 (283)
                      .+..|+.|.|.|.+.++|.++  .|.....    ++...   -...|......+..-+.|.|.+.|..+..  ....+.+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v   94 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATI---ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV   94 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccccccccc---cCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence            478899999999999998444  3332222    11111   23456666666666679999999986632  2233445


Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEe--eecCCEEEEEeCCEecCCCC--CeEE----E--EeCCEEEEEEcCCCCCC
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFD--GDPLPTIKWFREDFPITSSP--DFQI----H--TFSTKSILIMRQVFMED  200 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~--g~p~~~~~W~k~~~~~~~~~--~~~~----~--~~~~~~~l~i~~~~~~d  200 (283)
                      ..+|.............+..+.+.|.+.  +.|.+++.|+.++.......  ...+    .  .....+.+.+......+
T Consensus        95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~  174 (741)
T KOG3515|consen   95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD  174 (741)
T ss_pred             ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence            5566555444445667788999999764  45778999999876543211  1100    0  00123357777777899


Q ss_pred             CEEEEEEEEeCCc---eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-eeCCCeeEEeeCCEE
Q psy14060        201 SGVFAVIAENRGG---KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKVSSL  276 (283)
Q Consensus       201 ~G~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~  276 (283)
                      .|+|+|.+.|...   .......+.+....       ....+..........+|+.+.|.|.+. |+|.++++|+++.+.
T Consensus       175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~  247 (741)
T KOG3515|consen  175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRP  247 (741)
T ss_pred             CceeEcccccccCccccccceeEeeccccc-------ccceecchhhcCcccccceEEEEehhhcCCcchhhhhcccccc
Confidence            9999999998532   23333344443310       112222223336788999999999775 578889999999877


Q ss_pred             ecCC
Q psy14060        277 SDVK  280 (283)
Q Consensus       277 l~~~  280 (283)
                      ...+
T Consensus       248 ~~~~  251 (741)
T KOG3515|consen  248 QSES  251 (741)
T ss_pred             chhh
Confidence            6654

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.20  E-value=1.4e-10  Score=78.08  Aligned_cols=77  Identities=14%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             eeecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        143 CRAFEQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      ..+..|.++.|.|...+.     |.|.+.|||++.++...... +.   ....|.|.++..+|+|.|+|.+.|..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            567789999999987542     56899999999998764432 22   3347999999999999999999999877665


Q ss_pred             EEEEEE
Q psy14060        218 SANLVV  223 (283)
Q Consensus       218 ~~~l~v  223 (283)
                      .+...+
T Consensus        81 ~~t~t~   86 (92)
T cd05757          81 NVTRTI   86 (92)
T ss_pred             EEEEEE
Confidence            544433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.16  E-value=4.4e-10  Score=77.08  Aligned_cols=74  Identities=11%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEccCccce-EEeec-------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-------------TETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +|.+.......+.+|+.++|.|.+.|.|... .|...             ..++.+........|.|.+++.+|+|.|+|
T Consensus         2 ~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C   81 (98)
T cd05870           2 QPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC   81 (98)
T ss_pred             CCEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence            3444444444577889999999999999432 33221             124444443456789999999999999999


Q ss_pred             EEEeccee
Q psy14060        115 TERKYYAL  122 (283)
Q Consensus       115 ~a~n~~~~  122 (283)
                      .|.|..|.
T Consensus        82 ~A~N~~G~   89 (98)
T cd05870          82 EAASRIGG   89 (98)
T ss_pred             EEeccCCc
Confidence            99999884

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.13  E-value=4e-10  Score=74.60  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             CceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ....+.+|++++|.|.+.+ .+.+.+.|||++..+...        .....|.|.+++.+|+|.|+|.+.+..+...
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            3457889999999999854 466789999999866421        1234699999999999999999999887544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.13  E-value=2.8e-10  Score=76.68  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             eeeecCcEEEEEEEccCcc-ce------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|. +.      ..+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus        11 ~v~~G~~v~l~C~~~G~P~~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866          11 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEcCCCeEEEEEEEEEeCCeEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            4778889999999999984 22      22233356666656667799999999999999999999998853

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>smart00409 IG Immunoglobulin

Probab=99.10  E-value=5.4e-09  Score=69.21  Aligned_cols=82  Identities=26%  Similarity=0.481  Sum_probs=66.1

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|.|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999998877889999998 87776555666655555678999999999999999999988777666555


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            544

>smart00410 IG_like Immunoglobulin like

Probab=99.10  E-value=5.4e-09  Score=69.21  Aligned_cols=82  Identities=26%  Similarity=0.481  Sum_probs=66.1

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|.|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999998877889999998 87776555666655555678999999999999999999988777666555


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.07  E-value=1.8e-09  Score=71.94  Aligned_cols=65  Identities=15%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeec-CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITA-TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|.+.       ..+.. ..++.+........|.|.++..+|+|.|+|.|.|..|..
T Consensus         6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            366788999999999999443       23322 235666655567889999999999999999999999853

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.06  E-value=1.3e-09  Score=73.51  Aligned_cols=72  Identities=13%  Similarity=0.106  Sum_probs=53.1

Q ss_pred             eecCCCcEEEEEEEeeecCCEEEEEeCCEec-C-------------CCCCeEEEE---eCCEEEEEEcCCCCCCCEEEEE
Q psy14060        144 RAFEQDQARFEVEFDGDPLPTIKWFREDFPI-T-------------SSPDFQIHT---FSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      .+..|++++|.|..++.+.+.+.|++++... .             ...++....   ......|.|.++..+|+|.|+|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4678999999999998899999999766321 1             111222222   2334679999999999999999


Q ss_pred             EEEeCCcee
Q psy14060        207 IAENRGGKA  215 (283)
Q Consensus       207 ~a~n~~g~~  215 (283)
                      .+.|..+..
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            998876553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.06  E-value=1.5e-09  Score=72.77  Aligned_cols=72  Identities=14%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             cCcEEEEEEEccCccce-EEeec-------CCCEEEEE----cCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITA-------TETTEMEH----KGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK  129 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~  129 (283)
                      |+.++|.|.+.|.|.+. .|...       ..++.+..    ......|.|.++..+|+|.|+|.|.|..|. .....+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            67899999999998543 33221       23554432    122367999999999999999999999994 3344454


Q ss_pred             CCCCC
Q psy14060        130 PAKPP  134 (283)
Q Consensus       130 ~~~~p  134 (283)
                      +..+|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            44444

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.06  E-value=4.8e-10  Score=75.46  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CceeecCCCcEEEEEEE-eeecCCEEEEEeCCEec--CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        141 QPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPI--TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++..+  ....+..+..  ....|.|.++..+|+|.|+|.|.|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            44568889999999976 67799999999998754  2222222222  23469999999999999999999976443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.06  E-value=3.2e-09  Score=72.34  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +.+.+..|+++.|.|.+.+.+.+.+.|++.+..+        ....++.+.. ......|.|.++..+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            4567899999999999988888899998632211        1123444422 223467999999999999999999876


Q ss_pred             CceeEEEEEEE
Q psy14060        212 GGKAKCSANLV  222 (283)
Q Consensus       212 ~g~~~~~~~l~  222 (283)
                      .. ....+.|.
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            42 34555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.05  E-value=1.2e-09  Score=67.93  Aligned_cols=63  Identities=30%  Similarity=0.647  Sum_probs=50.1

Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +|+.+.|.|.+.+.+.+.+.|++++..+..  ....  ......|.|.++...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999988888899999999888762  2111  22345799999999999999999988654

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.05  E-value=2e-09  Score=72.88  Aligned_cols=65  Identities=17%  Similarity=0.313  Sum_probs=49.9

Q ss_pred             eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|++++|.|.+.|.|.  +.     ..+....++.+... +....|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05737          12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE   84 (92)
T ss_pred             EEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence            3677889999999999984  32     33444455565543 446789999999999999999999998853

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.04  E-value=1.8e-09  Score=72.77  Aligned_cols=65  Identities=15%  Similarity=0.287  Sum_probs=55.4

Q ss_pred             eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|.  +.     ..+....++.+...+....|.|.++..+|+|.|+|.+.|..+..
T Consensus        11 ~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~   82 (90)
T PF07679_consen   11 TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA   82 (90)
T ss_dssp             EEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred             EEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence            4677889999999999873  33     55666788888888899999999999999999999999998743

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.04  E-value=2.5e-09  Score=71.29  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEeeecC--CEEEEEeCCEecCCC---CCeE---EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        148 QDQARFEVEFDGDPL--PTIKWFREDFPITSS---PDFQ---IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       148 g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~---~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      |+++.|.|.+.+.+.  ..+.|...+......   ...+   .......+.|.|.++..+|+|.|+|.|.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999987554  578998876543211   1100   01122356899999999999999999999999888888


Q ss_pred             EEEEE
Q psy14060        220 NLVVE  224 (283)
Q Consensus       220 ~l~v~  224 (283)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.04  E-value=2.7e-09  Score=72.93  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=51.6

Q ss_pred             CceeeecCCeeeecCcEEEEEEEccCccce-EEeec-----------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-----------TETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      |.+.......+.+|+.++|.|.+.|.|... .|...           ..++.+........|.|.+++.+|+|.|.|.|.
T Consensus         3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (96)
T cd05732           3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEAS   82 (96)
T ss_pred             ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEE
Confidence            334333334577888999999999998322 33221           123333333456789999999999999999999


Q ss_pred             ecceee
Q psy14060        118 KYYALS  123 (283)
Q Consensus       118 n~~~~~  123 (283)
                      |..|..
T Consensus        83 N~~G~~   88 (96)
T cd05732          83 NRIGGD   88 (96)
T ss_pred             eCCCCc
Confidence            998853

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.04  E-value=6.8e-09  Score=69.99  Aligned_cols=83  Identities=17%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             ceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      .+.+..|+.+.|.|.+.++|.|. +.|.+++..+.......+....     -.+.|.+.++..++.|.|+|.|.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45789999999999999999997 9999998876543332222221     23689999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy14060        216 KCSANLVVE  224 (283)
Q Consensus       216 ~~~~~l~v~  224 (283)
                      +..+.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.01  E-value=3.3e-09  Score=69.63  Aligned_cols=78  Identities=31%  Similarity=0.531  Sum_probs=57.6

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |.+...+  ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....          .+.+..+..+|.|.|.|.+.+..+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCC
Confidence            4444333  5688999999999999888899999999877653211          167788899999999999999665


Q ss_pred             e-eEEEEEEEE
Q psy14060        214 K-AKCSANLVV  223 (283)
Q Consensus       214 ~-~~~~~~l~v  223 (283)
                      . .+..+.|.|
T Consensus        70 ~~~s~~~~v~V   80 (80)
T PF13895_consen   70 SNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEeeeEEeeC
Confidence            3 344455543

...

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.01  E-value=2.8e-09  Score=69.74  Aligned_cols=61  Identities=8%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             cCcEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         63 AKSQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+++.|.|.+.|.|... .      .+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            57899999999998433 2      2333456666666667899999999999999999999998854

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.01  E-value=1.1e-09  Score=70.47  Aligned_cols=58  Identities=7%  Similarity=-0.029  Sum_probs=44.4

Q ss_pred             cCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         63 AKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+.++|.|.+.|.|...       ..+....++.+..   ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~   65 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKA   65 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCce
Confidence            56899999999999433       2333445555542   3479999999999999999999998853

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PHA03376 BARF1; Provisional

Probab=99.00  E-value=8.1e-09  Score=76.26  Aligned_cols=122  Identities=15%  Similarity=0.196  Sum_probs=76.9

Q ss_pred             ceeecCCCcEEEEEEEee---ecCCEEEEEeCCE----e-c------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDG---DPLPTIKWFREDF----P-I------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g---~p~~~~~W~k~~~----~-~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      .+....|+.+.|.|....   .+.-.++|+|.+.    . +            ....++.+....++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            456778999999998752   2445789999532    1 1            111223344445677899999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKV  273 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~  273 (283)
                      |+|+|..............|.+..          |-.+...........-+..++.|.+-|.|.|.++|+-|
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~----------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeee----------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence            999999986554333333333321          22222211111112246678999988999999999875

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.99  E-value=4.1e-09  Score=70.97  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCE--ec----CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-eCCcee
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDF--PI----TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKA  215 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~  215 (283)
                      +...+|+++.|.|.. +.|.|.+.||++..  ..    ....++...    ...|.|.++..+|+|.|+|.+. |..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            457889999999996 46889999998432  11    112233221    1349999999999999999998 566666


Q ss_pred             EEEEEEEEE
Q psy14060        216 KCSANLVVE  224 (283)
Q Consensus       216 ~~~~~l~v~  224 (283)
                      ....+|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            666777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.99  E-value=8e-09  Score=70.65  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             CceeeecCCeee-ecCcEEEEEEEccCccce-EEeecC-----------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         50 PSASGVHGKEIH-TAKSQQVQKEKKGDKEIV-RKITAT-----------ETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        50 p~~~~~~~~~v~-~g~~v~l~C~~~g~~~i~-~~~~~~-----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      |.+.......+. .|+.++|.|.+.|.|... .|....           .++.+........|.|.+++.+|+|.|+|.|
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A   82 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA   82 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence            444433333233 468899999999998332 332211           2333333334578999999999999999999


Q ss_pred             Eeccee
Q psy14060        117 RKYYAL  122 (283)
Q Consensus       117 ~n~~~~  122 (283)
                      .|..|.
T Consensus        83 ~N~~G~   88 (97)
T cd05869          83 SNTIGQ   88 (97)
T ss_pred             ecCCCC
Confidence            999984

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.98  E-value=2.7e-09  Score=70.98  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             CcEEEEEEEccCccc--e-EEeecC---------CCEE-EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060         64 KSQQVQKEKKGDKEI--V-RKITAT---------ETTE-MEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK  129 (283)
Q Consensus        64 ~~v~l~C~~~g~~~i--~-~~~~~~---------~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~  129 (283)
                      +.+.|.|.+.|+|..  . .|...+         .++. +........|.|.+++.+|+|.|+|.|.|..+. .....+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            358999999999942  2 232221         1221 121223568999999999999999999999883 4445555


Q ss_pred             CCCCC
Q psy14060        130 PAKPP  134 (283)
Q Consensus       130 ~~~~p  134 (283)
                      +..||
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            55444

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.97  E-value=1.6e-09  Score=70.12  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=43.6

Q ss_pred             ecCcEEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         62 TAKSQQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        62 ~g~~v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +|+.+.|.|.+.|.|... .|.      ....+..+.   ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   66 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQ   66 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCce
Confidence            477899999999999433 332      222333332   23479999999999999999999998843

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.96  E-value=7.3e-09  Score=70.12  Aligned_cols=65  Identities=9%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|...       ..+....++.+........|.|.++..+|+|.|.|.+.|..|..
T Consensus        14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   85 (92)
T cd05747          14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ   85 (92)
T ss_pred             EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence            477788999999999999433       23334456666655567899999999999999999999998853

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.94  E-value=2.7e-09  Score=66.92  Aligned_cols=61  Identities=21%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             CCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEE--EEEEcCCCCCCCEEEEEEE
Q psy14060        148 QDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--ILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       148 g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a  208 (283)
                      |+++.|.|.+ .+.+...+.|++++..................  .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 66677899999998866543222222222211  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.93  E-value=9.3e-09  Score=66.54  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             cEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         65 SQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        65 ~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++.|.|.+.|.|.+.       ..+....++.+........|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   65 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE   65 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc
Confidence            378999999999443       3333455667666666889999999999999999999999885

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.92  E-value=7.1e-09  Score=70.10  Aligned_cols=63  Identities=11%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             eeeecCcEEEEEEEccCccceEEee-------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKIT-------ATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~-------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+..|+++.|.|.+.|.|....|..       ...++.+.. ......|+|.+++.+|+|.|+|.|.|..+
T Consensus        11 ~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977          11 EISVGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EECCCCeEEEEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            4778899999999999884223332       122333322 23457899999999999999999999865

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.92  E-value=7.1e-09  Score=67.05  Aligned_cols=58  Identities=7%  Similarity=0.117  Sum_probs=43.4

Q ss_pred             EEEEEEEccCccce-------EEeec-CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |.|.|.+.|.|...       +.+.. .+++.+... ++..+|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~   67 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA   67 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE
Confidence            57999999999433       34432 345555433 344689999999999999999999999843

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.92  E-value=3.1e-09  Score=71.35  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CCceeecCCCcEEEEEE-EeeecCCEEEEEeCCEe-cCCCCCeEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEeCCce
Q psy14060        140 IQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFP-ITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAENRGGK  214 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~-~~g~p~~~~~W~k~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~  214 (283)
                      .+...+.+|+.+.|.|. ..|+|.|.+.|++++.. +....++.+..   ...|.|.++..+|+| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEEccccc
Confidence            45678999999999997 58999999999987654 33333433332   246999999999999 899999987533

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.91  E-value=4.4e-09  Score=70.52  Aligned_cols=62  Identities=15%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|... .|.....    ...+...  ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851          12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS--GAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecC--CCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            466788999999999999433 3333221    1122222  247999999999999999999999884

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.91  E-value=7.7e-09  Score=66.94  Aligned_cols=58  Identities=12%  Similarity=0.254  Sum_probs=42.7

Q ss_pred             EEEEEEEccCccce-------EEeec-CCCEEEEEcC-CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHKG-KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+|.|.+.|.|...       ..+.. ..++.+...+ +...|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   67 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV   67 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            57999999999433       22322 3455654432 34579999999999999999999999853

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.91  E-value=8.7e-09  Score=69.40  Aligned_cols=72  Identities=13%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             eeecCCCcEEEEEEE-ee----ecCCEEEEEeCCEecCCCC-CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        143 CRAFEQDQARFEVEF-DG----DPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~-~g----~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      +.+..|.+..|.|.- .+    .+.+.++|||++.++.... ++...  .....|.|.++..+|+|.|+|.+.+..+...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL--KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec--CCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            456778899999973 33    3567999999999887543 22221  1233599999999999999999999876543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.90  E-value=7.4e-09  Score=71.06  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             eeeecCcEEEEEEEcc-Ccc--ce-----EEeecCCCEEEEEc-----CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKG-DKE--IV-----RKITATETTEMEHK-----GKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g-~~~--i~-----~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+++.|.|.+.| .|.  +.     ..+.......+...     .....|.|.++..+|+|.|+|.|.|..|..
T Consensus        14 ~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          14 FVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             EEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            4677889999999999 773  32     23332222222211     124789999999999999999999998853

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.89  E-value=5.6e-09  Score=69.59  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             CcEEEEEEEccCc--cce-EEeecCCCEE----------EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060         64 KSQQVQKEKKGDK--EIV-RKITATETTE----------MEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK  129 (283)
Q Consensus        64 ~~v~l~C~~~g~~--~i~-~~~~~~~~~~----------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~  129 (283)
                      +++.|.|.+.|.|  .+. .|...+..+.          .........|.|.+++.+|+|.|+|.|.|..+. .....+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            4689999999998  333 3332221111          111123567999999999999999999998873 3444455


Q ss_pred             CCCCC
Q psy14060        130 PAKPP  134 (283)
Q Consensus       130 ~~~~p  134 (283)
                      +..||
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            54444

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.89  E-value=2.9e-09  Score=70.33  Aligned_cols=71  Identities=18%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             CcEEEEEEEccCc--cce-------EEeec---CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccC
Q psy14060         64 KSQQVQKEKKGDK--EIV-------RKITA---TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQK  129 (283)
Q Consensus        64 ~~v~l~C~~~g~~--~i~-------~~~~~---~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~  129 (283)
                      ++++|.|.+.+++  .++       +.|..   ..++..... .....|.|.+++.+|+|+|+|.|.|..+ ......+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4689999998866  443       23321   123222110 1235799999999999999999999987 34455566


Q ss_pred             CCCCC
Q psy14060        130 PAKPP  134 (283)
Q Consensus       130 ~~~~p  134 (283)
                      +..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            65555

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.88  E-value=1.9e-08  Score=67.76  Aligned_cols=63  Identities=13%  Similarity=0.054  Sum_probs=46.7

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +..|+.+.|.|.+.|.|... .|...      ..............|.|.++..+|.|.|+|.|.|..|.
T Consensus        12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~   81 (90)
T cd04972          12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ   81 (90)
T ss_pred             EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence            66788999999999999433 33322      22222233334678999999999999999999999885

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PHA03376 BARF1; Provisional

Probab=98.87  E-value=1.2e-07  Score=70.14  Aligned_cols=88  Identities=13%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC
Q psy14060         85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP  163 (283)
Q Consensus        85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  163 (283)
                      ..++.+-.+.++.+|.|.+++.+|.|.|+|....... ......+....|..+......-....-+..++.|.+-|.|.|
T Consensus        75 RGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P  154 (221)
T PHA03376         75 RGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP  154 (221)
T ss_pred             ccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCc
Confidence            3444443445889999999999999999998766543 222222222222222222211112224567899997788999


Q ss_pred             EEEEEeCCE
Q psy14060        164 TIKWFREDF  172 (283)
Q Consensus       164 ~~~W~k~~~  172 (283)
                      .++|..+..
T Consensus       155 ~~~Wle~~~  163 (221)
T PHA03376        155 HVQWLMPEG  163 (221)
T ss_pred             hheeccccC
Confidence            999988654

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.87  E-value=6.7e-09  Score=67.01  Aligned_cols=58  Identities=9%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             cCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         63 AKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+.+.|.|.+.|.|...       ..+....++.+..   ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   65 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKA   65 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCce
Confidence            56899999999988333       2333344555432   3469999999999999999999998853

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.87  E-value=8.2e-08  Score=64.74  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .++.+.+|+++.|.|.+.+.....+.|++.+..+        ....++.... .+...+|.|.++..+|.|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            4578899999999999988766677887665332        2345666554 45667899999999999999999865

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.86  E-value=1.1e-08  Score=69.48  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=46.1

Q ss_pred             eeeecCcEEEEEEEccCcc-ce-EEee-cC-------CCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV-RKIT-AT-------ETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~-~~-------~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.++|.|.+.|.|. +. .|.. ..       .++.+.. ......|.|.+++.+|+|.|+|.|.|..+
T Consensus        11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865          11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            4778899999999999983 33 4443 22       1333322 22357899999999999999999999973

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.85  E-value=2.4e-08  Score=65.76  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ....+..|+++.|.|...+ +.+.+.|++++..+....++.....+    |.|..+..+|+|.|.|.+. ..|.....+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence            4567889999999999987 57899999999988765555544443    8899999999999999976 3344443333


Q ss_pred             EE
Q psy14060        221 LV  222 (283)
Q Consensus       221 l~  222 (283)
                      +.
T Consensus        78 y~   79 (85)
T cd05872          78 YS   79 (85)
T ss_pred             EE
Confidence            33

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.84  E-value=3.7e-08  Score=66.64  Aligned_cols=80  Identities=13%  Similarity=0.204  Sum_probs=56.1

Q ss_pred             CceeecCCCcEEEEEEEe------ee-----cCCEEEEEeCCEecCCCCC-----eEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        141 QPCRAFEQDQARFEVEFD------GD-----PLPTIKWFREDFPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~------g~-----p~~~~~W~k~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ....+.+|+.+.|.|...      ++     ....+.|||++..+.....     .++...+  ..|.|..+..+|+|.|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLY   85 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEE
Confidence            345788999999999861      11     2348999999755443221     1333322  3699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANLV  222 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~  222 (283)
                      +|.+.|...-...+..|+
T Consensus        86 ~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEECCCCcceEEEEEEE
Confidence            999999876666555554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.83  E-value=2.1e-08  Score=67.56  Aligned_cols=62  Identities=8%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee-----cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT-----ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|++++|.|.+.|.+ .. .|..     ...++.+..  ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus        14 ~v~~g~~v~l~C~a~g~~-p~i~W~kng~~l~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          14 PPEDNQPVTLTCEAEGQA-TYIWWVNNGSLLVPPRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             ccccCCcEEEEEEeCCCC-CEEEEEECCEECCCCCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            477889999999999983 22 3322     123333332  33479999999999999999999998843

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.82  E-value=2e-08  Score=67.68  Aligned_cols=60  Identities=8%  Similarity=0.071  Sum_probs=42.4

Q ss_pred             cCcEEEEEEEccCccce-EEeecC----C-------C-EEEEE-------cCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITAT----E-------T-TEMEH-------KGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~----~-------~-~~~~~-------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.|... .|+...    .       . .....       .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            56799999999999444 554321    0       1 11111       123457999999999999999999999884

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.82  E-value=5.1e-08  Score=66.07  Aligned_cols=62  Identities=8%  Similarity=0.052  Sum_probs=44.3

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------------CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      .+.+|+++.|.|.+.|.|... .|...              ..++.+... .....|.|.+++.+|+|.|+|.+....
T Consensus         8 tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~   85 (95)
T cd05882           8 TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMP   85 (95)
T ss_pred             EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeec
Confidence            477899999999999988433 33221              233333222 246899999999999999999887643

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.82  E-value=1.7e-08  Score=64.67  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=41.0

Q ss_pred             cEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         65 SQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        65 ~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +++|.|.+.|.|... .      .+....++.+...   ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~   63 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNV   63 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEE
Confidence            478999999998433 2      2333445554432   347788999999999999999998853

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.82  E-value=3.6e-08  Score=63.88  Aligned_cols=57  Identities=9%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             EEEEEEEccCccce-------EEeec-CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|...       +.+.. ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   66 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV   66 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc
Confidence            57999999999433       33332 345555433 34567999999999999999999999984

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.81  E-value=3.5e-08  Score=65.66  Aligned_cols=64  Identities=11%  Similarity=0.169  Sum_probs=45.4

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec------CCCE-EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA------TETT-EMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +..|+.+.|.|.+.|.|.+. .|...      ..+. ..........|.|.++..+|+|.|+|.+.|..|..
T Consensus         6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05857           6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI   77 (85)
T ss_pred             cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence            56788999999999998443 33322      2111 11112235679999999999999999999998853

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.80  E-value=3.9e-08  Score=66.47  Aligned_cols=65  Identities=18%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|...       ..+....++.+... +....|.|.+++.+|+|.|+|.+.|..|..
T Consensus        12 ~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891          12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             EEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence            366788999999999888333       23333344444332 334689999999999999999999998853

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.79  E-value=1.9e-08  Score=66.96  Aligned_cols=60  Identities=15%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.|.|...       ..+....++...    ...|.|.++..+|+|.|+|.|.|..|.
T Consensus        10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05728          10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGT   76 (85)
T ss_pred             EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence            477889999999999998433       233333344432    236899999999999999999999884

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.78  E-value=7.2e-08  Score=67.32  Aligned_cols=72  Identities=10%  Similarity=0.030  Sum_probs=47.7

Q ss_pred             cCcEEEEEEEccCccce-------EEeec-CCCEEEEE--cC--CEEEEEEccCC-CCCCeEEEEEEEeccee-eeeecc
Q psy14060         63 AKSQQVQKEKKGDKEIV-------RKITA-TETTEMEH--KG--KIQERVVDASE-LDDDGYYAITERKYYAL-SDLSEQ  128 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~--~~--~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~-~~~~~~  128 (283)
                      |+.++|.|.+.|.|.+.       ..+.. ..++.+..  .+  ....|.|.+++ .+|.|.|+|.|.|..|. .....+
T Consensus        23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L  102 (109)
T cd05773          23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL  102 (109)
T ss_pred             CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence            45799999999999443       22221 22343221  11  24679999997 59999999999999985 334445


Q ss_pred             CCCCCC
Q psy14060        129 KPAKPP  134 (283)
Q Consensus       129 ~~~~~p  134 (283)
                      .+..+|
T Consensus       103 ~~~~~p  108 (109)
T cd05773         103 VSTSRP  108 (109)
T ss_pred             EecCCC
Confidence            555444

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.78  E-value=7.1e-08  Score=63.71  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCeE-EEEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQ-IHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +.|.|.+.| +|.+.++|++++..+....... ....+    ..+.|.+......|.|.|+|.|.|....
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~   71 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP   71 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence            689999987 6888999999999876432111 11111    1346788877778899999999987644

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.77  E-value=3.5e-08  Score=64.07  Aligned_cols=64  Identities=14%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             EEEEEEEe-eecCCEEEEEeCCEecCCCCCeEE--EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        151 ARFEVEFD-GDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       151 v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +.|.|... +.|.+.++|||++.++........  ......++|.|.....+|.+.|+|.|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            68999985 568899999999999865321000  00012346999999999999999999998765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.76  E-value=1.4e-08  Score=63.98  Aligned_cols=55  Identities=7%  Similarity=-0.067  Sum_probs=41.8

Q ss_pred             EEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|.+. .|...+....  .......|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~--~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~   56 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLIS--GKHSQHSLQIKDVTEASAGTYTLVLWNSAAG   56 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECc--ccCCcCEEEECCCCHHHCEEEEEEEEECCcc
Confidence            57999999999554 5554443322  2234568999999999999999999999883

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.76  E-value=9.8e-08  Score=66.76  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe------c--------CCCCCeEEEEe--CCEEEEEEcCCCCCCCE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP------I--------TSSPDFQIHTF--STKSILIMRQVFMEDSG  202 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~------~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G  202 (283)
                      .+..+.+..|+++.|.|.+.+.+...+.|||....      +        ....++.+...  .....|.|.++..+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            45567899999999999998777789999985321      0        01234444332  35678999999999999


Q ss_pred             EEEEEEEeCC
Q psy14060        203 VFAVIAENRG  212 (283)
Q Consensus       203 ~Y~C~a~n~~  212 (283)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.76  E-value=2e-08  Score=65.25  Aligned_cols=58  Identities=9%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             cCcEEEEEEEccCccce-EEeecCCCE-------EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITATETT-------EMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.|... .|...+..+       .....+  ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~   66 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGY   66 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCE
Confidence            57899999999999433 333222111       111222  36889999999999999999999984

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.75  E-value=1.7e-08  Score=65.71  Aligned_cols=58  Identities=9%  Similarity=0.043  Sum_probs=40.7

Q ss_pred             cCcEEEEEEEccCccce-EEeec------CCC-EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITA------TET-TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~------~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |++++|.|.+.|.|... .|...      ... .....  ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   66 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGN   66 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCe
Confidence            67899999999998432 22221      111 01111  2347999999999999999999999884

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.75  E-value=9e-08  Score=65.01  Aligned_cols=64  Identities=8%  Similarity=0.046  Sum_probs=45.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------cCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------ATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+++.|.|.+.+.|... .|..              ...++.+... ....+|.|.+++.+|+|.|.|.+.+....
T Consensus         8 ~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~   87 (95)
T cd07701           8 TVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK   87 (95)
T ss_pred             EEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc
Confidence            477888999999999887322 3321              1235544322 35678999999999999999988875433

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.74  E-value=4.6e-08  Score=64.11  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=43.9

Q ss_pred             eeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+.+.|.|.+.|.+ .+.     ..+....++.+.  +  ..|.|.+++.+|+|.|+|.+.|..+.
T Consensus         6 ~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           6 AHPGDLLQLRCRLRDDVQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             ecCCCCEEEEEEecCCCceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCc
Confidence            66788999999999976 333     233333344443  2  36999999999999999999998764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.74  E-value=2e-08  Score=63.94  Aligned_cols=55  Identities=16%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             EEEEEEEccCccce-EE------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKGDKEIV-RK------ITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+|.|.+.|.|... .|      +....++.+.   ....|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   62 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYA   62 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence            57999999998433 33      2333444443   23479999999999999999999998853

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.73  E-value=3e-08  Score=66.49  Aligned_cols=62  Identities=8%  Similarity=0.026  Sum_probs=44.4

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCE----EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETT----EMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.|.|... .|.......    ...  .....|.|.+++.+|+|.|+|.+.|..|.
T Consensus        12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (88)
T cd04968          12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK   78 (88)
T ss_pred             EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence            366788999999999998332 333221110    111  13468999999999999999999999884

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.72  E-value=4.7e-08  Score=65.81  Aligned_cols=60  Identities=7%  Similarity=0.077  Sum_probs=42.1

Q ss_pred             cCcEEEEEEEccCccce-EEeecC----------CC--EEEEEc-------CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITAT----------ET--TEMEHK-------GKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~----------~~--~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |++++|.|.+.|.|... .|+...          ..  ..+...       .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            56899999999999443 444311          11  111111       12357999999999999999999999884

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.72  E-value=4.5e-08  Score=66.66  Aligned_cols=61  Identities=11%  Similarity=0.019  Sum_probs=44.9

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec------C-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA------T-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +..|+.+.|.|.+.|.|... .|...      . .++...  .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (95)
T cd05730          15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGE   83 (95)
T ss_pred             EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence            66788999999999988433 33322      2 233322  23347999999999999999999999984

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.71  E-value=3.7e-08  Score=63.63  Aligned_cols=74  Identities=23%  Similarity=0.404  Sum_probs=49.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.+...........+. +.|.|.+.+.+ .+.++|+ +......  ............|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            35666655555544444 99999999887 7889999 1111100  01112222345799999999999999999986

...

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.71  E-value=7.1e-08  Score=66.26  Aligned_cols=65  Identities=11%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             eeeecCcEEEEEEEccCccce-E------EeecCCCEEEEEc------CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-R------KITATETTEMEHK------GKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+..|+.+.|.|.+.|.|.+. .      ++..+.+......      .....|.|.+++.+|+|.|+|.|.|..+..
T Consensus        14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            366678899999999999543 3      3332222211111      123689999999999999999999998853

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.71  E-value=7.5e-08  Score=63.87  Aligned_cols=59  Identities=8%  Similarity=0.088  Sum_probs=40.8

Q ss_pred             cCcEEEEEEEccCccce-EEeecCC----------CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITATE----------TTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~~----------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      |+.++|.|.+.|.|.+. .|.....          +..+........|.|.+++.+|+|.|.|.+.|...
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            67899999999987443 3332111          11111122357899999999999999999998754

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.70  E-value=6.6e-08  Score=62.52  Aligned_cols=57  Identities=12%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             cCcEEEEEEEccCccce-EEee-------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKIT-------ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.+.|.|.+.|.|... .|+.       ...++...   ....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   65 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGE   65 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCe
Confidence            57899999999988433 3332       12222222   2346899999999999999999999884

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.70  E-value=1.3e-07  Score=66.26  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--ecC----------------CCCCeEEEEeC-CEEEEEEcCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--PIT----------------SSPDFQIHTFS-TKSILIMRQVFM  198 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~~----------------~~~~~~~~~~~-~~~~l~i~~~~~  198 (283)
                      ..+..+.+.+|++++|.|.+.+ +.+.+.|||...  .+.                ...++...... ....|.|.++..
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3456678999999999999988 778899998642  110                01233333222 456899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy14060        199 EDSGVFAVIAENR  211 (283)
Q Consensus       199 ~d~G~Y~C~a~n~  211 (283)
                      +|+|.|+|.+.+.
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 EDSAVYLCASSLG   94 (110)
T ss_pred             hhCEEEEEEeeCC
Confidence            9999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.69  E-value=5.2e-08  Score=65.60  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             cCcEEEEEEEccCccce-EEeecC--------------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITAT--------------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~--------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.|... .|...+              .++.+.   ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            57899999999988432 232221              233332   2346999999999999999999999884

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.68  E-value=2.6e-07  Score=63.29  Aligned_cols=65  Identities=12%  Similarity=0.135  Sum_probs=46.5

Q ss_pred             eeeecCcEEEEEEEccCcc---ce-----EEeec--CCCEEEEEc----CCEEEEEEccCCCCC-CeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE---IV-----RKITA--TETTEMEHK----GKIQERVVDASELDD-DGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~---i~-----~~~~~--~~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~  123 (283)
                      .+..|+.+.|.|.+.|.|.   +.     +.+..  ..++.+...    +....|.|.++..+| .|.|.|.|.|..|..
T Consensus        12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~   91 (98)
T cd05758          12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG   91 (98)
T ss_pred             EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence            3567889999999999873   22     22322  245555432    234689999999955 899999999999853

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.68  E-value=2.1e-07  Score=64.68  Aligned_cols=75  Identities=13%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             EecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCE--e---cC---------CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDF--P---IT---------SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ...+..+.+.+|++++|.|.+.+.. ...+.|||...  .   +.         ...++..........|.|.++..+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3455667889999999999997654 56799998531  1   10         01234443444556899999999999


Q ss_pred             EEEEEEEEeC
Q psy14060        202 GVFAVIAENR  211 (283)
Q Consensus       202 G~Y~C~a~n~  211 (283)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.68  E-value=1.1e-07  Score=62.51  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             cCcEEEEEEEccCccce-EEeec---CCCEEEEE--------cCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITA---TETTEMEH--------KGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~---~~~~~~~~--------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+.++|.|.+.|.|... .|...   .....+..        ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL   73 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE
Confidence            67899999999998432 33321   11111110        1123679999999999999999999998853

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.67  E-value=1.2e-07  Score=62.56  Aligned_cols=63  Identities=11%  Similarity=0.041  Sum_probs=44.4

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecCCCEE----EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITATETTE----MEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ...|+.+.|.|.+.|.|... .|........    .........|.|.+++.+|+|.|+|.+.|..|.
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   73 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE   73 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc
Confidence            44578999999999987332 3333222211    112224578999999999999999999999884

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.66  E-value=6.3e-08  Score=62.94  Aligned_cols=59  Identities=7%  Similarity=0.032  Sum_probs=41.5

Q ss_pred             cCcEEEEEEEccCccce-EEeec------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITA------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.|... .|...      .... .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~   66 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY   66 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCe
Confidence            67899999999998432 33221      1111 111223467999999999999999999999884

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.66  E-value=5.1e-08  Score=62.11  Aligned_cols=54  Identities=15%  Similarity=0.092  Sum_probs=40.0

Q ss_pred             EEEEEEEccCccce-EEeec-----CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKITA-----TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|...     ..++.+.   ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   60 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGK   60 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCc
Confidence            57999999998433 33332     2334443   2347999999999999999999999884

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.66  E-value=7.6e-08  Score=63.91  Aligned_cols=60  Identities=8%  Similarity=0.015  Sum_probs=41.1

Q ss_pred             cCcEEEEEEEccC--ccce-EEeecCCC-----------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGD--KEIV-RKITATET-----------TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~--~~i~-~~~~~~~~-----------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.  |.+. .|......           ...........|.|.+++.+|+|.|.|.+.|..+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~   74 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD   74 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc
Confidence            6789999999999  5332 33211110           00111123578999999999999999999998773

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.64  E-value=7.2e-08  Score=61.75  Aligned_cols=58  Identities=12%  Similarity=-0.011  Sum_probs=40.2

Q ss_pred             EEEEEEEccCccce-EEeecCCCEE---EEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKGDKEIV-RKITATETTE---MEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.|.|.+.|.|... .|...+....   .........|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   62 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA   62 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE
Confidence            47999999999433 4433221110   1111234689999999999999999999999853

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.64  E-value=1.7e-07  Score=63.18  Aligned_cols=74  Identities=8%  Similarity=0.025  Sum_probs=54.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+ ...+..|++|+|.|... .+...+.|+|+|.......   .........+.|.+++.+|+|.|+|.+.+.
T Consensus         2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            34444444 35788999999999875 4778899999987543211   111234557999999999999999999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.63  E-value=6.1e-08  Score=63.17  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             eeeecCcEEEEEEEccCccc--eEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI--VRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+.+|+.|+|.|.+.+.|..  ..|...+...  ..  ....|.|.++ .+|+|.|+|.+.|.
T Consensus        11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l--~~--~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL--ET--TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             EeeCCCCEEEEEeCCCCCCCccEEEEECCEEe--ec--cCCeEEEeec-ccCCEEeEEECCCC
Confidence            48889999999999997742  2555444322  12  3457889999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.63  E-value=1.6e-07  Score=62.53  Aligned_cols=62  Identities=10%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             eeeecCcEEEEEEE-ccCccce-EEee------c-CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEK-KGDKEIV-RKIT------A-TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~-~g~~~i~-~~~~------~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+ .|.|... .|..      . ..++....   ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus         7 ~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           7 QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCce
Confidence            36678899999998 6777332 2222      2 22333322   3479999999999999999999998743

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.62  E-value=5.6e-07  Score=61.08  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             eeeecCcEEEEEEEccCccc---e-----EEeec--CCCEEEEEc----CCEEEEEEccCCCCC-CeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI---V-----RKITA--TETTEMEHK----GKIQERVVDASELDD-DGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i---~-----~~~~~--~~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.+.|..   .     ..+..  ..++.+...    +....|.|.++..+| .|.|.|.|.|.+|..
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d   91 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG   91 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence            46788899999999877732   2     12212  356776543    478899999998877 799999999999854

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.61  E-value=1.5e-07  Score=62.19  Aligned_cols=61  Identities=7%  Similarity=-0.046  Sum_probs=43.1

Q ss_pred             eeeecCcEEEEEEEcc-Cccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKG-DKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g-~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .|.+|+.++|.|.+.+ .+... .+...+..  +........|.|.+++.+|+|.|+|.+.+..+
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~--~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKA--KKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeE--ccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence            4778899999999864 33322 33333322  11222356899999999999999999999876

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.61  E-value=3.5e-07  Score=62.25  Aligned_cols=63  Identities=8%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------ATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|++++|.|.+.+.+... .|..              ...++.+.. .+....|.|.+++.+|+|.|.|.+.+...
T Consensus         8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   86 (95)
T cd05717           8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV   86 (95)
T ss_pred             EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence            467889999999998876222 2321              123444421 23457899999999999999999886643

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.60  E-value=3.7e-07  Score=64.61  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             CCceeecCCCcEEEEEEEee--ecCCEEEEEeCC--Eec------C-----------CCCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--FPI------T-----------SSPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~--~~~------~-----------~~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      +..+.+..|++++|.|.+.+  .+.+.+.|||..  ...      .           ...++.+....  ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            45567889999999999977  577889999852  110      0           12345554444  5678999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      ..+|+|.|+|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.60  E-value=1.3e-07  Score=61.53  Aligned_cols=55  Identities=11%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             EEEEEEEccCccce-EEee------cC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKIT------AT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~------~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+|.|.+.|.|... .|..      .. .++.+..  ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   63 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGS   63 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCe
Confidence            57999999998322 2222      22 1223322  2357999999999999999999999884

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.60  E-value=2.7e-07  Score=59.75  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             EEEEEEEcc-Cccce-EEeec------CCC---EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKG-DKEIV-RKITA------TET---TEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g-~~~i~-~~~~~------~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.|.|.+.| .|.+. .|...      ..+   +.+........|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            469999999 77443 33322      221   113333346789999999999999999999998853

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.59  E-value=1.1e-07  Score=62.39  Aligned_cols=39  Identities=5%  Similarity=0.070  Sum_probs=34.8

Q ss_pred             ecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecC
Q psy14060        241 TTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       241 ~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~  279 (283)
                      ..|.+..+.+|+.+.|.|.+.|.|.| +|.|++||+++..
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~   42 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD   42 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC
Confidence            45567889999999999999999999 7999999999864

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.59  E-value=2.2e-07  Score=60.20  Aligned_cols=55  Identities=9%  Similarity=0.070  Sum_probs=38.8

Q ss_pred             EEEEEEEccCccce-EEeecC---------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKITAT---------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|...+         .++.+..  ....|.|.+++.+|+|.|.|.|.|..|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~   65 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGS   65 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCE
Confidence            47999999999433 333222         1233322  2347899999999999999999999874

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.59  E-value=9.6e-08  Score=61.72  Aligned_cols=54  Identities=11%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             EEEEEEEccCccce-EE------ee--cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RK------IT--ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~------~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|      +.  ...++...   ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~   63 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGT   63 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCc
Confidence            47999999999432 22      22  22344433   2346999999999999999999999885

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.59  E-value=1.2e-06  Score=60.97  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CCCcEEEEEEEeeec------CCEEEEEeCC-----E-ec--CCC--------CCeEEEE---eCCEEEEEEcCCCCCCC
Q psy14060        147 EQDQARFEVEFDGDP------LPTIKWFRED-----F-PI--TSS--------PDFQIHT---FSTKSILIMRQVFMEDS  201 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p------~~~~~W~k~~-----~-~~--~~~--------~~~~~~~---~~~~~~l~i~~~~~~d~  201 (283)
                      .|+.++|.|.....+      ...+.|+|..     . .+  ...        .+.++..   .....+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987643      4689999862     1 01  011        1111111   22456899999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|.|.+.+..+.......|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877777777777764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.58  E-value=7.4e-08  Score=61.67  Aligned_cols=53  Identities=11%  Similarity=0.071  Sum_probs=38.8

Q ss_pred             EEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|.      ....++.  .  ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~   60 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDVTEEDAGNYTVVLTNKQAK   60 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcCCHHHCEEEEEEEEcCCcc
Confidence            57999999999443 333      2222222  1  3467999999999999999999998873

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.58  E-value=1.4e-07  Score=61.51  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=37.9

Q ss_pred             EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCC----CCCeEEEEEEEecceeee
Q psy14060         66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASEL----DDDGYYAITERKYYALSD  124 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~~~~  124 (283)
                      ++|.|.+.|.|.+. .|...        ..++.+.  .....|.|.++..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            57999999998433 33321        1223322  2345777887753    799999999999998543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.58  E-value=8.3e-07  Score=61.95  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             CCCcEEEEEEEeeec------------CCEEEEEeCCE-----ec---------CCC--CCeEEEE---eCCEEEEEEcC
Q psy14060        147 EQDQARFEVEFDGDP------------LPTIKWFREDF-----PI---------TSS--PDFQIHT---FSTKSILIMRQ  195 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p------------~~~~~W~k~~~-----~~---------~~~--~~~~~~~---~~~~~~l~i~~  195 (283)
                      .|++++|.|......            .+.+.|+|...     .+         ...  .++.+..   .....+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999986432            36899998521     11         011  1333322   22457899999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      ++.+|+|.|+|.+.+..........|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999997766666666666653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.57  E-value=4.9e-07  Score=62.70  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=51.0

Q ss_pred             eecCCCcEEEEEEEeee-cCCEEEEEeCCEe-----c------------CCCCCeEEEEeC--CEEEEEEcCCCCCCCEE
Q psy14060        144 RAFEQDQARFEVEFDGD-PLPTIKWFREDFP-----I------------TSSPDFQIHTFS--TKSILIMRQVFMEDSGV  203 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~  203 (283)
                      .+..|++++|.|.+... +...+.|+|....     +            ....++.+....  ...+|.|.++..+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999875 5678999985321     1            011233333333  46689999999999999


Q ss_pred             EEEEEEeCCc
Q psy14060        204 FAVIAENRGG  213 (283)
Q Consensus       204 Y~C~a~n~~g  213 (283)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.57  E-value=1.4e-07  Score=64.70  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=40.3

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|+.+..
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~   44 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET   44 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence            47788888889999999999999999999999999999998875

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.56  E-value=2.4e-07  Score=61.68  Aligned_cols=59  Identities=14%  Similarity=0.068  Sum_probs=40.3

Q ss_pred             cCcEEEEEEEccCcc--ce-EEeecCCCE------------EEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         63 AKSQQVQKEKKGDKE--IV-RKITATETT------------EMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        63 g~~v~l~C~~~g~~~--i~-~~~~~~~~~------------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      |+.+.|.|.+.+++.  +. .|.......            ..........|.|.+++.+|+|.|+|.|.|..+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   74 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM   74 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce
Confidence            678999999988762  22 332222110            000112367899999999999999999999876

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.55  E-value=2.4e-07  Score=60.66  Aligned_cols=55  Identities=9%  Similarity=0.051  Sum_probs=39.2

Q ss_pred             EEEEEEEccCccce-EEeec--------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         66 QQVQKEKKGDKEIV-RKITA--------------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~--------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      |+|.|.+.|.|... .|...              ..++.+.   ...+|.|.++..+|+|.|.|.|.|..|..
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            57999999998433 23221              1223322   23579999999999999999999998843

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.55  E-value=4.1e-07  Score=57.81  Aligned_cols=58  Identities=9%  Similarity=-0.038  Sum_probs=38.3

Q ss_pred             cCcEEEEEEEccCccce-EEeecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITATETTEM--EHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      |+.++|.|.+.|.|... +|...+.....  ........|.|.++  .|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~   61 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGM   61 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCE
Confidence            56899999999999444 44332211100  00112346888886  4899999999999885

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.55  E-value=1.3e-07  Score=60.52  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             EEEEEEEccCccce-EEeecC-----CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKITAT-----ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|....     .+...  ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   61 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGS   61 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCce
Confidence            57999999998433 333222     12222  123457999999999999999999999884

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.54  E-value=2.2e-07  Score=62.90  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=42.6

Q ss_pred             eeecCcEEEEEEEcc-----Cccce-EEeecCC--------CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKG-----DKEIV-RKITATE--------TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g-----~~~i~-~~~~~~~--------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+.+.|.|.+.|     .|..+ .|...+.        ..++...  ...|.|.++..+|+|.|+|.+.|..+.
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            667889999999999     45222 2222211        1222221  357999999999999999999998874

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.54  E-value=8.4e-07  Score=59.84  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=46.2

Q ss_pred             eeeecCcEEEEEEEccCc--cce-------------EEeecCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-------------RKITATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-------------~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|++++|.|.+.+..  .+.             .......|+.... .+...+|.|.+++.+|+|.|.|.+.....
T Consensus         8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~   86 (95)
T cd05881           8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPP   86 (95)
T ss_pred             EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccC
Confidence            466788999999999863  111             1112455676665 46788999999999999999998876543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.54  E-value=1.5e-07  Score=59.87  Aligned_cols=54  Identities=7%  Similarity=0.025  Sum_probs=38.4

Q ss_pred             EEEEEEEccCccce-EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.|.+.|.|... .|...+.    ...+.   ....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~   59 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK---RGVHLTIYEVTEKDAGNYTVVLTNPITK   59 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc---cCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence            47899999999443 3332211    11211   2347999999999999999999999873

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.52  E-value=3.9e-07  Score=61.41  Aligned_cols=72  Identities=13%  Similarity=0.058  Sum_probs=48.6

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCC--E-EEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATET--T-EMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~--~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ++|.+...++..|..|+.|+|.|..............+..  . .....+....|.|.+++.+|+|.|+|...+.
T Consensus         1 pkP~L~a~p~~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           1 PKPSLWAEPSSVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCEEEecCCCccCCCCcEEEEEecCCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3567776666668899999999988643332222222111  1 1112345678999999999999999998875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.52  E-value=1.7e-06  Score=59.40  Aligned_cols=76  Identities=16%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             CCcEEEEEEEeeec---CCEEEEEeCCE--ec---------CC----C--CCeEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy14060        148 QDQARFEVEFDGDP---LPTIKWFREDF--PI---------TS----S--PDFQIHT---FSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       148 g~~v~l~C~~~g~p---~~~~~W~k~~~--~~---------~~----~--~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      |+++.|.|...+..   ...+.|+|...  .+         ..    .  .++.+..   .....+|.|.++..+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999986322   23578887541  11         00    0  1222211   12346899999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v  223 (283)
                      +|.+.+..+.......|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776665565554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.52  E-value=2.3e-07  Score=61.75  Aligned_cols=64  Identities=11%  Similarity=0.018  Sum_probs=43.1

Q ss_pred             eeeecCcEEEEEEEcc-Cccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKG-DKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g-~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.+ .|... .|.................|.|.+++.+|+|.|.|.+.|..+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   77 (85)
T cd05754          12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT   77 (85)
T ss_pred             EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence            3667889999999975 44322 3333222111111112457999999999999999999998874

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.52  E-value=1.8e-06  Score=58.99  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             CcEEEEEEEeeec---CCEEEEEeCCEe---------------cCCCCCeEEEEeC---CEEEEEEcCCCCCCCEEEEEE
Q psy14060        149 DQARFEVEFDGDP---LPTIKWFREDFP---------------ITSSPDFQIHTFS---TKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       149 ~~v~l~C~~~g~p---~~~~~W~k~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +++.|.|.....+   ...+.|+|....               +......++....   ...+|.|.++..+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987644   346999986431               0111112222222   356899999999999999999


Q ss_pred             EEe-CCceeEEEEEEEE
Q psy14060        208 AEN-RGGKAKCSANLVV  223 (283)
Q Consensus       208 a~n-~~g~~~~~~~l~v  223 (283)
                      +.. ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5566666666655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.52  E-value=2.8e-07  Score=59.90  Aligned_cols=57  Identities=11%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             EEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.|.|.+.|.|.+. .|.      ....+..+........|.|.++..+|.|.|+|.+.|..|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~   64 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV   64 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC
Confidence            46899999998433 332      2222222222233457999999999999999999999884

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.50  E-value=6.9e-07  Score=58.68  Aligned_cols=57  Identities=11%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             EEEEEEccCccce-------EEeecCCCEEEE--E-----cCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         67 QVQKEKKGDKEIV-------RKITATETTEME--H-----KGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        67 ~l~C~~~g~~~i~-------~~~~~~~~~~~~--~-----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.|.+.|.|...       ..+.........  .     ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence            3689999998433       333333322221  1     1235679999999999999999999999853

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.50  E-value=3.1e-06  Score=58.83  Aligned_cols=79  Identities=10%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCCcEEEEEEEeeec------CCEEEEEeCCE----e----cCC----------CCCeEEEEe-CCEEEEEEcCCCCCCC
Q psy14060        147 EQDQARFEVEFDGDP------LPTIKWFREDF----P----ITS----------SPDFQIHTF-STKSILIMRQVFMEDS  201 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p------~~~~~W~k~~~----~----~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~  201 (283)
                      .|++++|.|.....|      ...+.|+|...    .    +..          ..++.+... ....+|.|.++..+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478999999987543      35699998631    0    100          012222111 2245799999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|.|.+.+..+.......|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888777777777754

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.48  E-value=6.7e-07  Score=60.32  Aligned_cols=63  Identities=6%  Similarity=0.037  Sum_probs=44.1

Q ss_pred             eeecCcEEEEEEEccCccce-EEe------e--------------cCCCEEEEE---cCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKI------T--------------ATETTEMEH---KGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~------~--------------~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|+.|+|.|...+.+... .|.      .              ...++....   ..+...|+|.+++.+|+|.|+|.
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~   83 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE   83 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence            45788999999998877222 221      0              122233332   34568899999999999999999


Q ss_pred             EEeccee
Q psy14060        116 ERKYYAL  122 (283)
Q Consensus       116 a~n~~~~  122 (283)
                      +.|..+.
T Consensus        84 v~~~~~~   90 (94)
T cd07690          84 VEDKKEE   90 (94)
T ss_pred             ECCccce
Confidence            9887653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.48  E-value=1e-06  Score=60.34  Aligned_cols=67  Identities=7%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             eecCCCcEEEEEEEeee--cCCEEEEEeCCE--ecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        144 RAFEQDQARFEVEFDGD--PLPTIKWFREDF--PIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~--~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      .+..|++++|.|...+.  ....+.||+...  ...            ...++..........|.|.++..+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998764  456799998532  110            01245554455667899999999999999999


Q ss_pred             EEe
Q psy14060        208 AEN  210 (283)
Q Consensus       208 a~n  210 (283)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.47  E-value=2.6e-07  Score=58.99  Aligned_cols=52  Identities=12%  Similarity=-0.028  Sum_probs=37.0

Q ss_pred             EEEEEEEccCccce-E------EeecC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         66 QQVQKEKKGDKEIV-R------KITAT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~------~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ++|.|.+.|.|... .      .+... .++.  ..  ..+|.|.+++.+|+|.|+|.+.|...
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCHHHCEEEEEEEEcccc
Confidence            47999999999443 2      33222 2222  22  23799999999999999999998744

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.47  E-value=2e-06  Score=59.25  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=51.8

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe-----c----CC----------CCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP-----I----TS----------SPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~-----~----~~----------~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      .+.+..+.+|+++.|.|.........+.|||....     +    ..          ..+..+..   ..+|.|.+++..
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~---ngSL~I~~v~~~   80 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP---NGSLLIQNVTQK   80 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC---CCcEEEecCCcc
Confidence            34455678999999998765434458999996321     1    00          01112221   236999999999


Q ss_pred             CCEEEEEEEEeCCc-eeEEEEEE
Q psy14060        200 DSGVFAVIAENRGG-KAKCSANL  221 (283)
Q Consensus       200 d~G~Y~C~a~n~~g-~~~~~~~l  221 (283)
                      |+|.|+|.+.+... .......|
T Consensus        81 D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          81 DTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             cCEEEEEEEEeCCccEEEEEEEE
Confidence            99999999988763 33444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.47  E-value=6.1e-07  Score=60.84  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             CeEEecCCceEEc---CCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        237 PSFLTTISSAVIN---VGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       237 p~~~~~~~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.|+..+.+..+.   +|+.+.|.|.+.|.|.|.|+|++||..+...
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~   48 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE   48 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC
Confidence            5666666665543   4789999999999999999999999998643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.47  E-value=7.9e-07  Score=57.82  Aligned_cols=56  Identities=13%  Similarity=0.152  Sum_probs=39.3

Q ss_pred             EEEEEccCccce-------EEeecCCCEEE--E---EcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         68 VQKEKKGDKEIV-------RKITATETTEM--E---HKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        68 l~C~~~g~~~i~-------~~~~~~~~~~~--~---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.|.+.|+|..+       ..+..+.+...  .   .......|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~   70 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED   70 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence            689999999433       34433333211  1   11235689999999999999999999999854

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.46  E-value=5.4e-07  Score=58.62  Aligned_cols=57  Identities=18%  Similarity=0.119  Sum_probs=36.6

Q ss_pred             EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCC----CCCeEEEEEEEecceeee
Q psy14060         66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASEL----DDDGYYAITERKYYALSD  124 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~~~~  124 (283)
                      +.|.|.+.|.|... .|...        ..++.+..  ....|.|..+..    .|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            57999999999443 33322        12333332  234566766654    378999999999988543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.45  E-value=7.4e-07  Score=57.96  Aligned_cols=57  Identities=19%  Similarity=0.170  Sum_probs=37.7

Q ss_pred             EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCC---C-CCCeEEEEEEEecceeee
Q psy14060         66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASE---L-DDDGYYAITERKYYALSD  124 (283)
Q Consensus        66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~---~-~D~G~Y~C~a~n~~~~~~  124 (283)
                      +.|.|.+.|.|..+ .|...        ..++.+..  ....|.|.++.   + .|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            47999999999444 33332        23333322  34577787653   2 469999999999998543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.43  E-value=4.3e-06  Score=58.81  Aligned_cols=75  Identities=9%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             CCceeecCCCcEEEEEEEeee----cCCEEEEEe---------------CCEecC-CC----CCeEEEEe--CCEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD----PLPTIKWFR---------------EDFPIT-SS----PDFQIHTF--STKSILIM  193 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~----p~~~~~W~k---------------~~~~~~-~~----~~~~~~~~--~~~~~l~i  193 (283)
                      +..+.+..|+.+.|.|.....    +...+.|.+               ++.... ..    .+..+...  ....+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            455778899999999998653    235799932               233221 11    12222211  23458999


Q ss_pred             cCCCCCCCEEEEEEEEeCCce
Q psy14060        194 RQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+++.+|.|.|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999987653

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.43  E-value=7.4e-07  Score=59.08  Aligned_cols=58  Identities=10%  Similarity=0.118  Sum_probs=41.1

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeecC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITAT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      .+..|+++.|.|.+.+.. .+.     ..+... .++.+.    ...|.|.+++.+|+|.|+|.+.+..
T Consensus         7 ~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           7 TFKLGNNAELKCSPKSNLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEECCCCEEEEEECCCCCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            377788999999986543 343     334333 344332    2358999999999999999998874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.40  E-value=1.2e-06  Score=59.48  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             CeEEecCCceEEcCC---CeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        237 PSFLTTISSAVINVG---QLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       237 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.|...|.+..+.+|   +.++|.|.+.|+|.|.|+|++||+.+...
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~   48 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFA   48 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccC
Confidence            566666777766555   68999999999999999999999998643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.39  E-value=1.9e-06  Score=55.87  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             EEEEEEEcc-Cccce-EEeecC----------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         66 QQVQKEKKG-DKEIV-RKITAT----------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        66 v~l~C~~~g-~~~i~-~~~~~~----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.|.|.+.+ .|.+. .|...+          .++.+........|.|.++..+|+|.|+|.+.|..|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~   69 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN   69 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence            468999875 45322 232221          1233333345678999999999999999999999874

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.39  E-value=2e-06  Score=58.61  Aligned_cols=78  Identities=13%  Similarity=0.255  Sum_probs=51.7

Q ss_pred             cCCCcEEEEEEEee-ecCCEEEEEeCCEecC--C-----------CCCe--EEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        146 FEQDQARFEVEFDG-DPLPTIKWFREDFPIT--S-----------SPDF--QIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       146 ~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..|++|+|.|.... .....+.|++....+.  .           ...+  ++.......+|.|.++..+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999998865 4456799998643221  0           0111  22333445789999999999999999998


Q ss_pred             eCCcee-EEEEEEEE
Q psy14060        210 NRGGKA-KCSANLVV  223 (283)
Q Consensus       210 n~~g~~-~~~~~l~v  223 (283)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            877543 33344443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.38  E-value=2e-06  Score=58.29  Aligned_cols=69  Identities=7%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .....+..|++|+|.|.... +...+.|||++...................+.|..++.+|+|.|.|...
T Consensus         7 ~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           7 HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            34567889999999998765 5568999999876332110000011234578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.38  E-value=1.3e-06  Score=58.92  Aligned_cols=60  Identities=10%  Similarity=0.063  Sum_probs=39.2

Q ss_pred             cCcEEEEEEEccCccce-EEeecCC------CEEEEEcCCEEEEEEccCC-CCCCeEEEEEEEecceeee
Q psy14060         63 AKSQQVQKEKKGDKEIV-RKITATE------TTEMEHKGKIQERVVDASE-LDDDGYYAITERKYYALSD  124 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~-~~~~~~~------~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~~~  124 (283)
                      |+.++|.|.+.|+|... .|.....      .......  ...|.|.++. .+|+|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--GGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            34699999999988333 3332211      1111111  2368888877 4999999999999988543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.37  E-value=3.6e-06  Score=56.74  Aligned_cols=66  Identities=17%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCC---------C-----CC--eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITS---------S-----PD--FQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~---------~-----~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      |++|+|.|.........+.|++.......         .     ..  -+..... ..+|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence            78999999987756668999987533210         0     00  1112222 267999999999999999999877


Q ss_pred             Cce
Q psy14060        212 GGK  214 (283)
Q Consensus       212 ~g~  214 (283)
                      .+.
T Consensus        80 ~~~   82 (92)
T cd05741          80 NGV   82 (92)
T ss_pred             CCc
Confidence            643

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.36  E-value=1.1e-05  Score=56.26  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             CCCcEEEEEEEeeec----------CCEEEEEeCC--Ee---c---------CCC--CCeEEE---EeCCEEEEEEcCCC
Q psy14060        147 EQDQARFEVEFDGDP----------LPTIKWFRED--FP---I---------TSS--PDFQIH---TFSTKSILIMRQVF  197 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p----------~~~~~W~k~~--~~---~---------~~~--~~~~~~---~~~~~~~l~i~~~~  197 (283)
                      .|++++|.|.....+          ...+.|+|..  ..   +         ...  .++.+.   ......+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999986533          2569999852  11   0         000  122221   11234679999999


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+|+|.|.|.+............|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999988766666667776653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.34  E-value=2.4e-06  Score=54.98  Aligned_cols=69  Identities=10%  Similarity=0.077  Sum_probs=43.9

Q ss_pred             CceeeecCCeeeecCcEEEEEEEccCc-cce-EEe---ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         50 PSASGVHGKEIHTAKSQQVQKEKKGDK-EIV-RKI---TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        50 p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~-~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      |.+.......+..+..+.|.|.+.+.+ ... +|.   ................|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            333433444333344599999999887 433 444   111111112233577899999999999999999987

...

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.34  E-value=7.9e-06  Score=53.26  Aligned_cols=74  Identities=16%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCce-eEEEEEEEEE
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGK-AKCSANLVVE  224 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~  224 (283)
                      +.|.|.+.| .|.+.|+|||++.++...........+   ..++|.|..-...|...|+|.|.|..-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            679999976 488899999999998754221111111   2456888777777777999999987532 3333444443

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.34  E-value=1.6e-06  Score=54.11  Aligned_cols=54  Identities=13%  Similarity=0.101  Sum_probs=33.2

Q ss_pred             cCcEEEEEEE-ccCccce-EEeecCC------CEEEEEcCC-EE-EEEEccCCCCCCeEEEEEE
Q psy14060         63 AKSQQVQKEK-KGDKEIV-RKITATE------TTEMEHKGK-IQ-ERVVDASELDDDGYYAITE  116 (283)
Q Consensus        63 g~~v~l~C~~-~g~~~i~-~~~~~~~------~~~~~~~~~-~~-~L~i~~~~~~D~G~Y~C~a  116 (283)
                      |++++|.|.+ .+.+... .|.....      .......+. .. .|.|.+++.+|+|.|+|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999 5544322 3332221      111111111 11 3999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.32  E-value=4.9e-06  Score=56.50  Aligned_cols=77  Identities=9%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             ecCCceeecCCCcEEEEEEEee-ecCCE--EEEEeCCEecCCCCCeE--EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDG-DPLPT--IKWFREDFPITSSPDFQ--IHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g-~p~~~--~~W~k~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..+.+..+.+|+.++|.|.+.| .|.+.  +.|||++..+.......  -.......+|.+.....+|...|+|.|.+..
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l   85 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDL   85 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEecc
Confidence            3444456789999999999976 46665  79999999886532111  0111124467776554455559999998865


Q ss_pred             ce
Q psy14060        213 GK  214 (283)
Q Consensus       213 g~  214 (283)
                      +.
T Consensus        86 ~~   87 (100)
T cd05755          86 RP   87 (100)
T ss_pred             Cc
Confidence            44

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.31  E-value=1.1e-06  Score=59.18  Aligned_cols=60  Identities=17%  Similarity=0.044  Sum_probs=45.1

Q ss_pred             eeeecCcEEEEEE-EccCccce-EE-------eecCCCEEEEEcCCEEEEEEccCCCCCCe-EEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKE-KKGDKEIV-RK-------ITATETTEMEHKGKIQERVVDASELDDDG-YYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~-~~g~~~i~-~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~  121 (283)
                      .|.+|+.+.|.|. ..|.|+.. .|       +....|+.+.   ....|.|.++..+|+| .|.|.|.|...
T Consensus        14 ~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~---~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          14 EVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG---QNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             EEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC---CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            4778999999997 58888443 22       2334455444   3478999999999999 89999998864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.31  E-value=2.4e-06  Score=55.80  Aligned_cols=67  Identities=10%  Similarity=0.104  Sum_probs=45.3

Q ss_pred             CceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      |.+.... ..+.+|+.+.|.|.+.+.|... .|.....  .+......  |.+.+++.+|+|.|+|.+.+..+
T Consensus         2 P~l~~~~-~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~--~~~~~~~~--~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    2 PVLSSSP-QSVEEGDSVTLTCSVSGNPPPQVQWYKNGS--PINSSQNG--LFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             -EEEEES-SEEETTSEEEEEEEEESSSSSEEEEEETTE--EEEEESSE--EEESSEEGGGTEEEEEEEEETTE
T ss_pred             cEEEccc-eEEeCCCcEEEEEEEEcccceeeeeeeeee--eeeeeeee--eeeeeeccccCEEEEEEEEeCCC
Confidence            3344333 3488899999999999887543 4444332  22222122  77789999999999999998665

...

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.30  E-value=1.4e-06  Score=59.21  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             EecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        240 LTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       240 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|||+.+...
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~   43 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV   43 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccc
Confidence            34556677889999999999999999999999999988754

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.30  E-value=1.8e-06  Score=58.40  Aligned_cols=43  Identities=14%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             CeEEecCCceEEcCC---CeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        237 PSFLTTISSAVINVG---QLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       237 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      |.|...|.+..+.++   ..+.|.|.+.|.|.|.++|+++|..+..
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~   47 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDL   47 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccC
Confidence            566666666655444   4799999999999999999999998854

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.29  E-value=1.1e-05  Score=56.78  Aligned_cols=74  Identities=14%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             CCceeecCCCcEEEEEEEeeec----CCEEEEEeC----CEe--c---C------CCCCe--EEEE----eCCEEEEEEc
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP----LPTIKWFRE----DFP--I---T------SSPDF--QIHT----FSTKSILIMR  194 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~----~~~--~---~------~~~~~--~~~~----~~~~~~l~i~  194 (283)
                      +..+.+..|+++.|.|.....+    ...+.|++.    +..  +   .      ...++  +...    .....+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4557889999999999986432    236999752    111  1   0      01111  1111    1234579999


Q ss_pred             CCCCCCCEEEEEEEEeCCc
Q psy14060        195 QVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +++.+|+|.|+|.+.|..+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999988654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.26  E-value=5.4e-06  Score=56.29  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ..|+.+.|.|.+.|. |. ..++|+++|..+..... .....  .+.   .+.|.+......+.+.|+|.+.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            467899999999997 54 68999999998865432 11111  111   234666666667999999999987643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.26  E-value=1.1e-05  Score=57.05  Aligned_cols=73  Identities=8%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             ecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCC--Ee---c---------CCCCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED--FP---I---------TSSPDFQIHT--FSTKSILIMRQVFMED  200 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d  200 (283)
                      ..+..+.+..|++++|.|..... ....+.|||..  ..   +         ....++.+..  .....+|.|.++..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            44566789999999999998753 45679999842  11   1         0123444432  2346789999999999


Q ss_pred             CEEEEEEEEe
Q psy14060        201 SGVFAVIAEN  210 (283)
Q Consensus       201 ~G~Y~C~a~n  210 (283)
                      +|.|.|.+..
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.25  E-value=3.1e-06  Score=52.15  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=39.1

Q ss_pred             ecCcEEEEEEEccCccce-EEeecCCCE--EEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         62 TAKSQQVQKEKKGDKEIV-RKITATETT--EMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        62 ~g~~v~l~C~~~g~~~i~-~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +|+.+.|.|.+.+.+... .|.......  ..........|.|.+++.+|+|.|+|.+.|..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            367899999987776332 333211111  11112245689999999999999999998864

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.25  E-value=8.5e-06  Score=53.90  Aligned_cols=63  Identities=10%  Similarity=0.130  Sum_probs=43.3

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecC------CCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITAT------ETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~------~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +..|+.+.|.|.+.+.|... .|....      ..... ........|.|.++..+|+|.|.|.+.|..+.
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~   76 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS   76 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence            44677899999999887322 332221      11111 11234567999999999999999999998774

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.24  E-value=2.4e-05  Score=54.77  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             cCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCE-----ecC----C----------CCCeEEEEe--CCEEEEEEcCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDF-----PIT----S----------SPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~-----~~~----~----------~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      .+..+.+..|+++.|.|... ......+.|++...     .+.    .          ..++.+...  ....+|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35667899999999999998 44556899998322     111    0          122333333  23568999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy14060        197 FMEDSGVFAVIAENR  211 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~  211 (283)
                      ..+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.24  E-value=1.1e-05  Score=57.09  Aligned_cols=74  Identities=11%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             CCceeecCCCcEEEEEEEeeec----CCEEEEEeCCE------ec---------C-CCCC----eEEEE--eCCEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP----LPTIKWFREDF------PI---------T-SSPD----FQIHT--FSTKSILIM  193 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~~~------~~---------~-~~~~----~~~~~--~~~~~~l~i  193 (283)
                      +..+.+..|+.++|.|......    ...+.|++...      .+         . ...+    +.+..  .....+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4557788999999999986432    24699986321      11         0 0111    11111  122467999


Q ss_pred             cCCCCCCCEEEEEEEEeCCc
Q psy14060        194 RQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .++..+|+|.|+|.+.|...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.22  E-value=1.1e-05  Score=53.04  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=42.7

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +.|.|.+.+ +|.+.++|++++..+...........+.    .+.|.+......+.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999976 4889999999999886432111111111    234666555566678999999987643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.20  E-value=2.8e-06  Score=57.23  Aligned_cols=62  Identities=8%  Similarity=0.020  Sum_probs=43.1

Q ss_pred             eeeecCcEEEEEEEc-cCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKK-GDKEIV-RKITA--------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|... |.|... .|+..        ..+..+..  ....|.|.+++.+|+|.|+|.|.|....
T Consensus        14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccC
Confidence            477899999999764 556433 33222        12222222  3568999999999999999999998653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.20  E-value=1e-05  Score=56.31  Aligned_cols=66  Identities=23%  Similarity=0.299  Sum_probs=45.8

Q ss_pred             eecCCCcEEEEEEEeee-cCCEEEEEeCCEe---------c--C-----------CCCCeEEE--EeCCEEEEEEcCCCC
Q psy14060        144 RAFEQDQARFEVEFDGD-PLPTIKWFREDFP---------I--T-----------SSPDFQIH--TFSTKSILIMRQVFM  198 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~---------~--~-----------~~~~~~~~--~~~~~~~l~i~~~~~  198 (283)
                      .+..|++++|.|...+. ....+.|||....         +  .           ...++.+.  .......|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998763 3457999985321         0  0           01233332  223356799999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|+|.|+|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00410 IG_like Immunoglobulin like

Probab=98.20  E-value=2e-05  Score=51.71  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec-------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA-------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..|+.+.|.|.+.+.+... .|...       ..++..........|.|.++..+|+|.|.|.+.+..+
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            56788999999999875222 33333       4566666555568899999999999999999987655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.20  E-value=2e-05  Score=51.71  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec-------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA-------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..|+.+.|.|.+.+.+... .|...       ..++..........|.|.++..+|+|.|.|.+.+..+
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            56788999999999875222 33333       4566666555568899999999999999999987655

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.17  E-value=1.1e-05  Score=55.80  Aligned_cols=67  Identities=13%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             eecCCCcEEEEEEEeeecCCEEEEEeCCEe----c------CC------------CCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        144 RAFEQDQARFEVEFDGDPLPTIKWFREDFP----I------TS------------SPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      .+..|++++|.|.........+.|||....    +      ..            ..++..........|.|.++..+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            357899999999986644567999985321    1      00            1123332334566899999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.17  E-value=4.4e-05  Score=53.09  Aligned_cols=78  Identities=15%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CCcEEEEEEEeeec-------CCEEEEEeCC-----Eec----CCC----------CCeEEEEe---CCEEEEEEcCCCC
Q psy14060        148 QDQARFEVEFDGDP-------LPTIKWFRED-----FPI----TSS----------PDFQIHTF---STKSILIMRQVFM  198 (283)
Q Consensus       148 g~~v~l~C~~~g~p-------~~~~~W~k~~-----~~~----~~~----------~~~~~~~~---~~~~~l~i~~~~~  198 (283)
                      |+++.|.|...-.|       .+.+.|.|..     ...    ...          .+..+...   ....+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67899999965322       3689998751     111    011          12222221   1356899999999


Q ss_pred             CCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        199 EDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|+|.|.|.+............|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999998766666677777653

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.15  E-value=1.4e-05  Score=54.58  Aligned_cols=70  Identities=10%  Similarity=0.062  Sum_probs=48.9

Q ss_pred             eeecCCCcEEEEEEEee-ecCCEEEEEeCCEe-----c--------CCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDG-DPLPTIKWFREDFP-----I--------TSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~-----~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +.+.+|++++|.|.... .....+.|+|....     +        ....++.+..  ......|.|.++..+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35678999999999865 34567899986421     1        0112344332  2345789999999999999999


Q ss_pred             EEEeCC
Q psy14060        207 IAENRG  212 (283)
Q Consensus       207 ~a~n~~  212 (283)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            986543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.15  E-value=2.9e-06  Score=56.90  Aligned_cols=59  Identities=8%  Similarity=0.030  Sum_probs=39.6

Q ss_pred             eeecCcEEEEEEEccCc-cceEEeecCCC--------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIVRKITATET--------TEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~~~~~~~~~--------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +.+|+.+.|.|.+.+.+ .+ .|...+..        .....  ....|.|.+++.+|+|.|.|.+.+..+
T Consensus         8 v~~g~~v~L~C~~~~p~~~i-~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           8 VVEGNSVFLECSPKSNLASV-VWLFQGGPLQRKEEPEERLLV--TEDGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             EECCCcEEEEEeCCCCCceE-EEEECCcccccccCcCceEEE--cCCCEEEccCCHHHCEEEEEEEecCcc
Confidence            66788999999998743 33 33322111        11221  123588999999999999999987754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.13  E-value=2.6e-05  Score=51.43  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=43.9

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCC------EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST------KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +.|.|.+.| +|.+.|+|+++|..+..... .+...+.      .+.|.+......+...|+|.+.|....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999987 48899999999998765322 2222211      234666566667778999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>KOG3515|consensus

Probab=98.12  E-value=1.2e-05  Score=72.70  Aligned_cols=173  Identities=14%  Similarity=0.069  Sum_probs=111.0

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEecce---eeeeeccCCCCCCeEEecCCc-eeecCCCcEEEEEEEeeec-CCEEEEEeC
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYA---LSDLSEQKPAKPPVFTKKIQP-CRAFEQDQARFEVEFDGDP-LPTIKWFRE  170 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~---~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p-~~~~~W~k~  170 (283)
                      ...+.+......|.|.|+|.+.+...   .+....+.+..+|.++..... ....+++.....-.+.+.| .+.+.|.++
T Consensus       360 ~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~  439 (741)
T KOG3515|consen  360 VISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFR  439 (741)
T ss_pred             eEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheec
Confidence            44556667888999999999887764   222233344445555443222 3344444444444444655 467999998


Q ss_pred             CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcC
Q psy14060        171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV  250 (283)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~  250 (283)
                      +..+................+-+.++...|.|.|.|.+.|+.|.......+.+..          .|.+...........
T Consensus       440 ~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~----------sp~~~~~~~~~~~~~  509 (741)
T KOG3515|consen  440 LYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT----------SPHNHHLQDQVEGAT  509 (741)
T ss_pred             ceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeecccc----------CCcccccccccccCC
Confidence            8887665443222222222233556888999999999999998877766655553          455544444456678


Q ss_pred             CCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060        251 GQLARFDAKISATKPL--DVYWLKVSSLSD  278 (283)
Q Consensus       251 g~~v~L~C~~~g~p~~--~v~W~~~g~~l~  278 (283)
                      |+++.+.|.....+.-  .+.|.+.|.+..
T Consensus       510 ~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~  539 (741)
T KOG3515|consen  510 GNSVDGECMQDEQPQDQQMHHEPRSGEPPS  539 (741)
T ss_pred             CCcccceeeccccccchhhhcccccCCCCc
Confidence            8889999998876644  488999887653

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.12  E-value=2.6e-05  Score=51.37  Aligned_cols=62  Identities=18%  Similarity=0.296  Sum_probs=43.0

Q ss_pred             EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +.|.|.+.| +|...++|+|+|..+............     ..+.|.+......+...|+|.+.|..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            689999987 677899999999997653222111111     13357776666667789999998865

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.11  E-value=5.9e-05  Score=51.71  Aligned_cols=74  Identities=19%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             cEEEEEEEeeec---CCEEEEEeCCE-----ec---C--------CC--CCeEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy14060        150 QARFEVEFDGDP---LPTIKWFREDF-----PI---T--------SS--PDFQIHT--FSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       150 ~v~l~C~~~g~p---~~~~~W~k~~~-----~~---~--------~~--~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ++.|.|......   ...+.|+|...     .+   .        ..  .+..+..  .....+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            588999886433   34789998421     11   0        00  1223322  1234579999999999999999


Q ss_pred             EEEe-CCceeEEEEEEEE
Q psy14060        207 IAEN-RGGKAKCSANLVV  223 (283)
Q Consensus       207 ~a~n-~~g~~~~~~~l~v  223 (283)
                      .+.+ ..|..+....|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9987 5566665666654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.09  E-value=4.6e-05  Score=51.93  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCcEEEEEEEeeecC-CEEEEEeCCEe----c----C-CC--------CCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        148 QDQARFEVEFDGDPL-PTIKWFREDFP----I----T-SS--------PDFQIH-TFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       148 g~~v~l~C~~~g~p~-~~~~W~k~~~~----~----~-~~--------~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      |++++|.|....... -.+.|+|....    +    . ..        .+..+. ......+|.|.++..+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            688999998754332 25899985321    0    0 00        011111 1123467999999999999999997


Q ss_pred             Ee-CCceeEEEEEEEE
Q psy14060        209 EN-RGGKAKCSANLVV  223 (283)
Q Consensus       209 ~n-~~g~~~~~~~l~v  223 (283)
                      .. ..|.......|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            64 4566666666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.06  E-value=3.1e-05  Score=53.99  Aligned_cols=61  Identities=8%  Similarity=0.035  Sum_probs=43.3

Q ss_pred             eeeecCcEEEEEEEccCc--cceEEe--------------------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIVRKI--------------------TATETTEMEH--KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~~~~--------------------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|++|+|.|.+.+.+  .+. |.                    ....++.+..  ......|.|.+++.+|+|.|.|
T Consensus         9 ~~~~G~~v~L~C~~~~~~~~~v~-W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C   87 (109)
T cd04983           9 SVQEGENVTLNCNYSTSTFYYLF-WYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC   87 (109)
T ss_pred             EEcCCCCEEEEEEECCCCccEEE-EEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence            366788999999998754  222 11                    1234555443  2368899999999999999999


Q ss_pred             EEEecc
Q psy14060        115 TERKYY  120 (283)
Q Consensus       115 ~a~n~~  120 (283)
                      .+.+..
T Consensus        88 ~~~~~~   93 (109)
T cd04983          88 ALSESG   93 (109)
T ss_pred             EEecCC
Confidence            987653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.05  E-value=8.7e-06  Score=54.78  Aligned_cols=58  Identities=10%  Similarity=0.123  Sum_probs=40.4

Q ss_pred             eeecCcEEEEEEEccCc-------cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDK-------EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-------~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +.+|+...|.|...+..       .+.     +.+....+ .+.   ....|.|.++..+|+|.|+|.+.|..+
T Consensus         7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV---KGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe---cCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            66788999999876432       332     23332222 221   345899999999999999999998866

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.05  E-value=0.00011  Score=50.12  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEe-CCceeEEEEEEEE
Q psy14060        189 SILIMRQVFMEDSGVFAVIAEN-RGGKAKCSANLVV  223 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  223 (283)
                      .+|.|.+++.+|.|.|.|.+.+ ..|..+....|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            5799999999999999999998 5777777777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.04  E-value=5.2e-05  Score=53.78  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=49.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeec------CCEEEEEeCCEe------c--CC---------CCCeEEE--EeCCEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP------LPTIKWFREDFP------I--TS---------SPDFQIH--TFSTKSILIM  193 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p------~~~~~W~k~~~~------~--~~---------~~~~~~~--~~~~~~~l~i  193 (283)
                      .+..+.+..|+.|+|.|......      ...+.||+....      +  ..         ..++.+.  .....+.|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            34567888999999999875311      245899986321      0  00         0133332  1334578999


Q ss_pred             cCCCCCCCEEEEEEEEeC
Q psy14060        194 RQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~  211 (283)
                      .++..+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.02  E-value=0.0002  Score=50.11  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      ..+|.|.+++.+|+|.|.|.+.+..........|.|..
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            46899999999999999999998877777777777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.01  E-value=6.5e-05  Score=56.20  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             ceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecC----------CC--CCeEE-EEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPIT----------SS--PDFQI-HTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~----------~~--~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      ...+.+|+++.|.|... +...+.+.|+|....+.          +.  .++.+ ...-....|.|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            46789999999999984 54567899999743221          11  12221 1222346899999999999999998


Q ss_pred             EEe-CCc-eeEEEEEEEEEe
Q psy14060        208 AEN-RGG-KAKCSANLVVEE  225 (283)
Q Consensus       208 a~n-~~g-~~~~~~~l~v~~  225 (283)
                      ..- +.| ..+..+.|.|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            754 345 677778888875

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.01  E-value=2.9e-05  Score=53.89  Aligned_cols=60  Identities=8%  Similarity=0.070  Sum_probs=41.6

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEee---------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKIT---------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~~---------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|.+.+..   .+.          ..+.         ...++.....+....|.|.+++++|+|.|.|.+.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   91 (106)
T cd04980          12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY   91 (106)
T ss_pred             ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence            66788999999987653   121          1110         0134555445567889999999999999999875


Q ss_pred             ec
Q psy14060        118 KY  119 (283)
Q Consensus       118 n~  119 (283)
                      +.
T Consensus        92 ~~   93 (106)
T cd04980          92 GT   93 (106)
T ss_pred             CC
Confidence            43

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.99  E-value=3.2e-05  Score=52.85  Aligned_cols=59  Identities=7%  Similarity=0.136  Sum_probs=42.6

Q ss_pred             eeecCcEEEEEEEccC--c--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGD--K--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~--~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|...+.  .  .+.          ..+         ....++.....+....|.|.+++++|+|.|.|.+
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   82 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV   82 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence            5678899999998764  2  222          111         1123666666667889999999999999999987


Q ss_pred             Ee
Q psy14060        117 RK  118 (283)
Q Consensus       117 ~n  118 (283)
                      .+
T Consensus        83 ~~   84 (98)
T cd04984          83 WD   84 (98)
T ss_pred             cc
Confidence            64

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.98  E-value=0.0002  Score=49.90  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             eecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEE-EEeC----CEEEEEEcCCCCCCC-EEEEEEEEeCCce
Q psy14060        144 RAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQI-HTFS----TKSILIMRQVFMEDS-GVFAVIAENRGGK  214 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~-~~~~----~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~  214 (283)
                      ....|+.++|.|.+.|. |. ..++|+|||..+........ ..++    ..+.|.+... ..|. ..|+|.+.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence            44567889999999884 54 58999999999764221111 1111    1234555543 3443 4699999987533

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.97  E-value=4.5e-05  Score=52.68  Aligned_cols=61  Identities=10%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccC-c--cce--E--------Ee------------ecCCCEEEEEcC--CEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGD-K--EIV--R--------KI------------TATETTEMEHKG--KIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~-~--~i~--~--------~~------------~~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y  112 (283)
                      +..|++++|.|.+.+. +  .+.  +        .+            ....++.+....  ...+|.|.+++.+|+|.|
T Consensus         3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   82 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY   82 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            5678899999998875 2  121  0        00            112344444333  678999999999999999


Q ss_pred             EEEEEecc
Q psy14060        113 AITERKYY  120 (283)
Q Consensus       113 ~C~a~n~~  120 (283)
                      .|.+.+..
T Consensus        83 ~C~v~~~~   90 (105)
T cd00099          83 YCAVSLSG   90 (105)
T ss_pred             EEEEecCC
Confidence            99988765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=97.97  E-value=5.7e-05  Score=47.22  Aligned_cols=62  Identities=32%  Similarity=0.474  Sum_probs=45.4

Q ss_pred             EEEEEEEeeecCCEEEEEeCCEecCCCCCe----EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        151 ARFEVEFDGDPLPTIKWFREDFPITSSPDF----QIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +.|.|.+.+.+...+.|++++.........    ..........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368999988677899999988776543211    11112234579999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.97  E-value=7.5e-05  Score=52.76  Aligned_cols=71  Identities=15%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCCE--e---c---C--------C---CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFREDF--P---I---T--------S---SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~--~---~---~--------~---~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      +....+..|++++|.|...+..  ...+.|||...  .   +   .        .   ..++......  ....|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4557789999999999876532  45689998531  1   1   0        0   1233333222  3457999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.96  E-value=5.3e-05  Score=51.27  Aligned_cols=68  Identities=10%  Similarity=0.041  Sum_probs=42.8

Q ss_pred             CceeeecCCeeeecCcEEEEEEEccCccceEEeecCCC--E-EE---EEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATET--T-EM---EHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~--~-~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      |.+...++..|..|++|+|.|..........+...+..  . ..   ...+....+.|.+++.+|+|.|.|...
T Consensus         2 P~l~a~p~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHPSPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecCCCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            55555566668889999999977643321111111111  0 10   012246688999999999999999765

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.94  E-value=0.00024  Score=46.43  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             eeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ..+..|++++|.|.....+.|  .+.|+..+.....     .. .....+|.+..+..+|+|..+|.+....-.......
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~-~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----IL-NQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----ec-cCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            467789999999999654444  8999875443221     00 123446999999999999999999754333333333


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      +.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            333

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.92  E-value=0.00015  Score=48.90  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             CCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCC-eEEEEe--CC---EEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        148 QDQARFEVEFDGD-PLP-TIKWFREDFPITSSPD-FQIHTF--ST---KSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       148 g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      ++.+.|.|.+.|. |.. .++|++++..+..... ......  +.   .+.|.+.   ..+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCCC
Confidence            6789999999995 553 8999999864332211 111111  11   1234443   3478899999987653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.90  E-value=6.5e-05  Score=50.48  Aligned_cols=55  Identities=11%  Similarity=0.020  Sum_probs=36.6

Q ss_pred             eeecCcEEEEEEEccCccce-EEee------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKIT------------ATETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +.+|+++.|.|.. +.|... .|..            ...++..    ....|.|.++.++|+|.|+|.+.+.
T Consensus         8 ~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~   75 (91)
T cd05871           8 GVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEH   75 (91)
T ss_pred             EecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEcc
Confidence            4567899999986 455222 3322            1122222    2245999999999999999999753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.90  E-value=0.0002  Score=48.38  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             cEEEEEEEeeec-CCEEEEEeCCE----ecC-----------CC--CCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEEE-
Q psy14060        150 QARFEVEFDGDP-LPTIKWFREDF----PIT-----------SS--PDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAE-  209 (283)
Q Consensus       150 ~v~l~C~~~g~p-~~~~~W~k~~~----~~~-----------~~--~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~-  209 (283)
                      +++|.|.....+ ...+.|.|...    .+.           ..  .+..+. ......+|.|.+++.+|.|.|.|.+. 
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            688999986432 24689987421    111           00  122221 11224589999999999999999964 


Q ss_pred             eCCceeEEEEEEEE
Q psy14060        210 NRGGKAKCSANLVV  223 (283)
Q Consensus       210 n~~g~~~~~~~l~v  223 (283)
                      .+.|...++..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            56788888888776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.85  E-value=0.00011  Score=50.41  Aligned_cols=28  Identities=11%  Similarity=0.014  Sum_probs=24.4

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +..+|.|.+++.+|+|.|+|.+.+..+.
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~   90 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFY   90 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcE
Confidence            5689999999999999999999876553

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.85  E-value=8.9e-05  Score=51.78  Aligned_cols=61  Identities=8%  Similarity=0.091  Sum_probs=41.3

Q ss_pred             eeeecCcEEEEEEEccCc-cce--E--------Eee-------------cCCCEEEEEcC-CEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV--R--------KIT-------------ATETTEMEHKG-KIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~--~--------~~~-------------~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|++++|.|.+.+.. .+.  +        .|.             ...++...... ....|.|.+++.+|+|.|.
T Consensus         9 ~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   88 (110)
T cd05899           9 IKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL   88 (110)
T ss_pred             EEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence            366788999999998722 222  1        110             02344443332 5688999999999999999


Q ss_pred             EEEEec
Q psy14060        114 ITERKY  119 (283)
Q Consensus       114 C~a~n~  119 (283)
                      |.+.+.
T Consensus        89 Ca~~~~   94 (110)
T cd05899          89 CASSLG   94 (110)
T ss_pred             EEeeCC
Confidence            988754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.82  E-value=3.8e-05  Score=50.57  Aligned_cols=56  Identities=7%  Similarity=0.101  Sum_probs=39.7

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .+..|+++.|.|...+.. .+.     ..+....++....    ..|.|.+++.+|+|.|.|.+.-
T Consensus         7 tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           7 TVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEec
Confidence            477888999999998776 443     2333334444432    2377999999999999998763

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.81  E-value=0.00014  Score=51.38  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=41.3

Q ss_pred             eeecCcEEEEEEEcc--Cc--cce--E--------Ee--------------ecCCCEEEEEcC--CEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKG--DK--EIV--R--------KI--------------TATETTEMEHKG--KIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g--~~--~i~--~--------~~--------------~~~~~~~~~~~~--~~~~L~i~~~~~~D~  109 (283)
                      +.+|+.++|.|.+.+  .+  .+.  +        .+              ....++.+....  ....|+|.+++.+|+
T Consensus        10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   89 (116)
T cd04982          10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS   89 (116)
T ss_pred             eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence            556889999999876  33  222  1        00              013456665554  678999999999999


Q ss_pred             eEEEEEEEe
Q psy14060        110 GYYAITERK  118 (283)
Q Consensus       110 G~Y~C~a~n  118 (283)
                      |.|.|.+..
T Consensus        90 g~Y~C~~~~   98 (116)
T cd04982          90 ATYYCAYWE   98 (116)
T ss_pred             EEEEEEEec
Confidence            999998754

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.77  E-value=0.00043  Score=44.59  Aligned_cols=63  Identities=21%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             cEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        150 QARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       150 ~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++|.|.+.|. |. ..+.|+|+|..+..... .....  .+.   .+.|.+......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899999986 55 58999999987543211 11111  111   2356666666677789999998754

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.73  E-value=0.0002  Score=50.41  Aligned_cols=28  Identities=14%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+..+|.|.+++.+|+|.|+|.+.|...
T Consensus        77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          77 RKDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             cCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            3568999999999999999999988754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.70  E-value=0.00022  Score=48.82  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             CCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +.......++.++|.|.+.|. | ...+.|+++|..+..... .....  ++.   .+.|.+......+...|+|.+.+.
T Consensus         9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699           9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence            333345567789999999984 5 458999999998753211 01111  111   224555554444567999999876


Q ss_pred             C
Q psy14060        212 G  212 (283)
Q Consensus       212 ~  212 (283)
                      .
T Consensus        89 ~   89 (100)
T cd07699          89 G   89 (100)
T ss_pred             C
Confidence            5

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.70  E-value=0.00038  Score=46.47  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             CCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        148 QDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTF-ST----KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       148 g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      |+.+.+.|.+. ++|.+.++|+.++..+........... ..    .+.|.+..-...+...++|.+.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            67999999875 578899999999887621110111111 11    235777655556677999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.69  E-value=0.00025  Score=46.18  Aligned_cols=58  Identities=14%  Similarity=0.249  Sum_probs=38.7

Q ss_pred             cEEEEEEEeeecCC--EEEEEeCCE--e---cC-------------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEE
Q psy14060        150 QARFEVEFDGDPLP--TIKWFREDF--P---IT-------------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       150 ~v~l~C~~~g~p~~--~~~W~k~~~--~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      ++.|.|.+.....+  .+.|++...  .   +.             ...++.+...  ....+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            46899998764443  789988541  0   00             0123333333  4557899999999999999996

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.69  E-value=8.2e-05  Score=50.54  Aligned_cols=27  Identities=22%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ...|.|.++..+|+|.|+|++.|....
T Consensus        69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C   95 (104)
T cd05896          69 EDSIWFRPAELQDSGLYTCVLRNSTYC   95 (104)
T ss_pred             CCEEEEEeCChhhCeEEEEEECCCCcc
Confidence            457899999999999999999998753

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.67  E-value=0.00016  Score=48.66  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=22.9

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ..+|.|.+++.+|+|.|+|.+....+
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~   81 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTNG   81 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCCC
Confidence            37899999999999999998877654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.64  E-value=0.00023  Score=49.44  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=21.1

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         94 GKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +....|+|.++..+|+|.|.|...
T Consensus        69 ~~~~~L~I~~~~~~Dsg~YyCa~~   92 (107)
T cd07700          69 SSRYRLHINRVKPEDSGTYFCMTV   92 (107)
T ss_pred             CCEEEEEECCCCHHHCEEEEEeEc
Confidence            446789999999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.62  E-value=0.0002  Score=50.00  Aligned_cols=34  Identities=9%  Similarity=0.016  Sum_probs=27.0

Q ss_pred             CEEEEE---cCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         87 TTEMEH---KGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        87 ~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      |+.+..   ..+..+|+|.+++.+|+|.|+|.+.+..
T Consensus        61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~   97 (112)
T cd05900          61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGI   97 (112)
T ss_pred             eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCC
Confidence            555543   3367899999999999999999887653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.61  E-value=0.00094  Score=45.08  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             cCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC-CeEEEEeC--C---EEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        146 FEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP-DFQIHTFS--T---KSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~-~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      ..|+.++|.|.+.|. |.. .++|+++|..+.... .......+  .   .+.|.+.   .++...|+|.+.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence            357889999999995 543 789999999876531 11111111  1   1234443   3456699999988653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.61  E-value=0.00021  Score=50.36  Aligned_cols=27  Identities=11%  Similarity=0.092  Sum_probs=23.6

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..+|.|.+++.+|+|.|.|.+.|...
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCC
Confidence            467899999999999999999887654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.59  E-value=0.00019  Score=49.44  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=22.7

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ..+|.|.+++.+|+|.|.|.+.+...
T Consensus        69 ngSL~I~~v~~~D~G~Y~~~v~~~~~   94 (105)
T cd05774          69 NGSLLIQNVTQKDTGFYTLQTITTNF   94 (105)
T ss_pred             CCcEEEecCCcccCEEEEEEEEeCCc
Confidence            45899999999999999999887653

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.59  E-value=0.00024  Score=50.15  Aligned_cols=59  Identities=10%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe---------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI---------TATETTEMEH--KGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~---------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++|+|.|......   .+.          ..+         ...+|+.+..  ..+...|.|.+++.+|+|.|.|.
T Consensus        11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   90 (116)
T cd07706          11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA   90 (116)
T ss_pred             EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            66788999999987532   121          011         1134565542  34678999999999999999998


Q ss_pred             EEe
Q psy14060        116 ERK  118 (283)
Q Consensus       116 a~n  118 (283)
                      +..
T Consensus        91 ~~~   93 (116)
T cd07706          91 LST   93 (116)
T ss_pred             EEC
Confidence            764

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.58  E-value=0.0012  Score=44.53  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC-Ce-EEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP-DF-QIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~-~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .....++|.|.+.|. |. ..++|+++|..+.... .. .....+.    .+.|.+......+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            345678999999984 54 5799999998863321 10 1111111    224555544444667999999886543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.55  E-value=0.00041  Score=48.95  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.3

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..+|.|.+++.+|+|.|.|.+.|...
T Consensus        78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          78 KDASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             CeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            357899999999999999999887643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.55  E-value=0.00033  Score=47.73  Aligned_cols=60  Identities=10%  Similarity=0.018  Sum_probs=40.5

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe--------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI--------TATETTEME--HKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~--------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|......   .+.          ..+        ....++.+.  ...+...|.|.+++.+|+|.|.|.+
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   83 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV   83 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence            56788999999876522   221          111        122345443  2346789999999999999999977


Q ss_pred             Eec
Q psy14060        117 RKY  119 (283)
Q Consensus       117 ~n~  119 (283)
                      ...
T Consensus        84 ~~~   86 (98)
T cd05716          84 GDD   86 (98)
T ss_pred             ccC
Confidence            654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.54  E-value=0.00023  Score=48.02  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=38.2

Q ss_pred             eeecCcEEEEEEE-ccC------ccce-----EEeecCC-CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEK-KGD------KEIV-----RKITATE-TTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~-~g~------~~i~-----~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +.+|.+..|.|.- .+.      +++.     ..+.... ++.. .. +...|.|.++..+|+|.|+|.+.+..+
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LK-GSTYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cC-CCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            5567789999963 222      2343     3333222 2221 11 234699999999999999999998865

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.54  E-value=0.00031  Score=48.63  Aligned_cols=27  Identities=19%  Similarity=0.101  Sum_probs=23.5

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..+|.|.+++.+|+|.|.|.+.+..+
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~   92 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLE   92 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEeccc
Confidence            467899999999999999999877654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00057  Score=46.90  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             eeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEe----CC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        143 CRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTF----ST---KSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~----~~---~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ..+..+..++|.|.+.|. |. ..++|++++..+.....  ......    +.   .+.|.+..-...+...|+|.+.+.
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            344557789999999995 54 36899999988754211  111111    11   224555443334566899999876


Q ss_pred             C
Q psy14060        212 G  212 (283)
Q Consensus       212 ~  212 (283)
                      .
T Consensus        91 ~   91 (102)
T cd05768          91 A   91 (102)
T ss_pred             C
Confidence            4

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.52  E-value=0.00025  Score=48.24  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=25.2

Q ss_pred             EcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         92 HKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ......+|+|.+++.+|+|.|.|.+.+..+
T Consensus        56 ~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~   85 (97)
T cd05775          56 FSQNDYSLQISNLKMEDAGSYRAEINTKNG   85 (97)
T ss_pred             ecCCceeEEECCCchHHCEEEEEEEEcCCC
Confidence            344578999999999999999998877654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.50  E-value=0.00042  Score=47.79  Aligned_cols=32  Identities=9%  Similarity=0.129  Sum_probs=25.1

Q ss_pred             CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         87 TTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        87 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      ++..+.......|.|.+++.+|+|.|.|...+
T Consensus        59 rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          59 RFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             eEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            34444445778899999999999999997653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.49  E-value=0.0008  Score=45.75  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.5

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         95 KIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      ...+|.|.+++.+|+|.|.|.+..
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~   83 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFAT   83 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEe
Confidence            467999999999999999998764

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.49  E-value=0.00075  Score=45.73  Aligned_cols=65  Identities=11%  Similarity=0.046  Sum_probs=45.9

Q ss_pred             eeeecCcEEEEEEEccCccce--EEeec------C--CCEEEEEcC---CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV--RKITA------T--ETTEMEHKG---KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~--~~~~~------~--~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .|.+||.+.|.|.++..|.+.  .|...      .  +.......+   -...|.|.+++.+|+|.|+|.+.|.....
T Consensus        14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            478899999999999999543  33322      1  111111111   34789999999999999999999987643

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.46  E-value=0.00044  Score=48.23  Aligned_cols=27  Identities=11%  Similarity=-0.013  Sum_probs=23.4

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      .+..+|+|.+++.+|+|.|.|.+....
T Consensus        69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~   95 (110)
T cd05878          69 RGDASLEISRLRSSDSGVYRCEVMHGI   95 (110)
T ss_pred             CCcEEEEECCCChhhCEEEEEEEEeCC
Confidence            457889999999999999999887653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.44  E-value=0.0025  Score=43.13  Aligned_cols=70  Identities=13%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             CcEEEEEEEeee-cCCEEEEEeCCE----ec-----------CCC--CCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        149 DQARFEVEFDGD-PLPTIKWFREDF----PI-----------TSS--PDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       149 ~~v~l~C~~~g~-p~~~~~W~k~~~----~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      +.++|.|..... ....++|.|...    .+           ...  .+..+.. .....+|.|.+++.+|.|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            368899988542 235678987432    11           011  1222211 1124689999999999999999986


Q ss_pred             eC-CceeEEE
Q psy14060        210 NR-GGKAKCS  218 (283)
Q Consensus       210 n~-~g~~~~~  218 (283)
                      .. .|..+..
T Consensus        81 t~P~g~~~~~   90 (96)
T cd05889          81 TYPQGSWEKV   90 (96)
T ss_pred             eCCCCCeEEE
Confidence            43 4554433

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.41  E-value=0.0032  Score=42.45  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEEe--CC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHTF--ST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+...+|.|.+.|. |. ..++|+++|..+..... ......  +.   .+.|.+.   +.+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            35568999999994 54 57899999998754311 111111  11   1235444   345669999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.40  E-value=0.0046  Score=41.52  Aligned_cols=67  Identities=10%  Similarity=0.070  Sum_probs=40.3

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeC--CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..|...+|.|.+.|. |. ..++|+|||..+.......+...+  .........+..++...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            346667899999995 43 578999999987621111122221  11111122234567778999998754

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.39  E-value=0.0015  Score=44.19  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             CCceeecCCCcEEEEEEEeee--cC-CEEEEEeCCEecCCC--CCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD--PL-PTIKWFREDFPITSS--PDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~--p~-~~~~W~k~~~~~~~~--~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +....+..++.++|.|.+.|.  |. ..++|+|+++.....  .......++.   .+.|.+..-...+.-.|+|.+.+.
T Consensus         6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~   85 (96)
T cd07696           6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP   85 (96)
T ss_pred             cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence            344456668899999999987  43 478999987533210  0000111111   123444443333455899999876


Q ss_pred             C
Q psy14060        212 G  212 (283)
Q Consensus       212 ~  212 (283)
                      .
T Consensus        86 ~   86 (96)
T cd07696          86 D   86 (96)
T ss_pred             C
Confidence            5

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.39  E-value=0.00094  Score=46.20  Aligned_cols=28  Identities=18%  Similarity=0.121  Sum_probs=24.2

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+..+|.|.+++.+|+|.|.|.+.+..+
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~   92 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIE   92 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCC
Confidence            3578999999999999999999887643

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.38  E-value=0.0011  Score=46.06  Aligned_cols=61  Identities=8%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             eeeecCcEEEEEEEc-cCc--cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKK-GDK--EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~--~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|+++.|.|... ...  .+.          ..+              ....++.+...  ....+|.|.+++.+|+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds   91 (114)
T PF07686_consen   12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS   91 (114)
T ss_dssp             EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred             EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence            356678899999998 222  221          111              11233333332  3478999999999999


Q ss_pred             eEEEEEEEec
Q psy14060        110 GYYAITERKY  119 (283)
Q Consensus       110 G~Y~C~a~n~  119 (283)
                      |.|.|.....
T Consensus        92 G~Y~C~v~~~  101 (114)
T PF07686_consen   92 GTYFCQVSTS  101 (114)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEEEC
Confidence            9999988766

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.31  E-value=0.00066  Score=46.18  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ...+|.|.+++.+|+|.|.|.....
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~   83 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTF   83 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeC
Confidence            5688999999999999999976543

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.30  E-value=0.00052  Score=42.08  Aligned_cols=53  Identities=21%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             ecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ...|.+|+|+|+..+   ..+.|++++..+.....          .+.+.+-. +++|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCC---CCceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            356889999998653   22999999866554222          13333333 8899999998543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.28  E-value=0.022  Score=48.67  Aligned_cols=114  Identities=10%  Similarity=0.046  Sum_probs=70.0

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEecce--e-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEEEe
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYA--L-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKWFR  169 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~--~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W~k  169 (283)
                      ...|.|..++..++|.|+-...+..+  . .....+....+|.+.+.  ..-+..|+...-.|.+..+ |.  ..+.||+
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~  274 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYK  274 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            46699999999999999976544322  1 11222333456665443  3346789999999999876 43  3689999


Q ss_pred             CCEecCCCCC----eEEEEeCC---EEEEEEcCCCC-CCCEEEEEEEEeC
Q psy14060        170 EDFPITSSPD----FQIHTFST---KSILIMRQVFM-EDSGVFAVIAENR  211 (283)
Q Consensus       170 ~~~~~~~~~~----~~~~~~~~---~~~l~i~~~~~-~d~G~Y~C~a~n~  211 (283)
                      |+.++.....    ......+.   .++|.+..... ...-..+|.+.-.
T Consensus       275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~  324 (486)
T PHA03273        275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY  324 (486)
T ss_pred             CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence            9999873222    11111222   33555554332 3344789987543

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.23  E-value=0.0036  Score=43.84  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=47.1

Q ss_pred             CCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC---eEEEEe-C---CEEEEEEcCCCCCC-CEEEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD---FQIHTF-S---TKSILIMRQVFMED-SGVFAVIAE  209 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~---~~~~~~-~---~~~~l~i~~~~~~d-~G~Y~C~a~  209 (283)
                      +....+..+..++|.|.+.|. |. ..++|++|+..+.....   ...... +   ..+.|.+......+ ...|+|.+.
T Consensus        10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~   89 (115)
T cd05769          10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ   89 (115)
T ss_pred             cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence            333344456789999999985 55 48999999988764321   111111 1   12346666544433 568999998


Q ss_pred             eCCceeE
Q psy14060        210 NRGGKAK  216 (283)
Q Consensus       210 n~~g~~~  216 (283)
                      +......
T Consensus        90 H~g~~~~   96 (115)
T cd05769          90 FYGGTDT   96 (115)
T ss_pred             EeCCccc
Confidence            8754443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.19  E-value=0.016  Score=49.82  Aligned_cols=115  Identities=10%  Similarity=-0.075  Sum_probs=69.3

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecc-e---eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEE
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYY-A---LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKW  167 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~-~---~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W  167 (283)
                      +...|.|.+++..++|.|+-...+.. +   ......+....+|.+.+.  ..-+..|+...-.|.+..+ |.  ..+.|
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEE
Confidence            45679999999999999997654322 1   112223444456654433  3346789999999999876 43  36899


Q ss_pred             EeCCEecCCCC---CeEEEEeCC---EEEEEEcCCCCCC--CEEEEEEEEeC
Q psy14060        168 FREDFPITSSP---DFQIHTFST---KSILIMRQVFMED--SGVFAVIAENR  211 (283)
Q Consensus       168 ~k~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d--~G~Y~C~a~n~  211 (283)
                      |+|+..+....   .+....++.   .++|.+......|  --..+|.+.-.
T Consensus       365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~  416 (566)
T PHA03269        365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWI  416 (566)
T ss_pred             EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEc
Confidence            99998887422   112222222   3345553322222  34679986543

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.18  E-value=0.0054  Score=41.43  Aligned_cols=63  Identities=13%  Similarity=0.065  Sum_probs=39.2

Q ss_pred             CcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEE-E-EeCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        149 DQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQI-H-TFST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       149 ~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~-~-~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ....+.|.+ .|+|.+.|+|+++.   ........ . ..+.   .+.|.+......+...|+|.+.|..-.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            456789998 57899999999971   11111111 1 1111   235666655556667999999987644

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.18  E-value=0.0019  Score=45.71  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=26.0

Q ss_pred             CCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         86 ETTEM--EHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        86 ~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .|+.+  +...+..+|.|.+++.+|+|.|.|.....
T Consensus        67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            34444  23456789999999999999999977653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.18  E-value=0.0021  Score=43.47  Aligned_cols=25  Identities=12%  Similarity=0.182  Sum_probs=21.6

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ...+|.|.|++.+|+|.|+|...+-
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tf   82 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTF   82 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeC
Confidence            4679999999999999999986544

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.12  E-value=0.0012  Score=44.92  Aligned_cols=40  Identities=10%  Similarity=0.069  Sum_probs=31.2

Q ss_pred             ecCCceEEcCCCeEEEEEEEEe-eCCCe--eEEeeCCEEecCC
Q psy14060        241 TTISSAVINVGQLARFDAKISA-TKPLD--VYWLKVSSLSDVK  280 (283)
Q Consensus       241 ~~~~~~~v~~g~~v~L~C~~~g-~p~~~--v~W~~~g~~l~~~  280 (283)
                      ..+.+..+.+|+.++|.|.+.| .|.+.  |.||++++.+..+
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~   48 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ   48 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc
Confidence            3344455789999999999986 56565  7999999998654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.10  E-value=0.033  Score=47.23  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeccee---eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEEE
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYAL---SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKWF  168 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W~  168 (283)
                      ..+.|.|..++...+|.|+-...+..+.   .....+....+|.+.+.  ..-+..|+...-.|.+..+ |.  ..+.||
T Consensus       180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEE
Confidence            3567999999999999999986554331   12233444556665443  3346789999999999876 43  368999


Q ss_pred             eCCEecCC
Q psy14060        169 REDFPITS  176 (283)
Q Consensus       169 k~~~~~~~  176 (283)
                      +|+..+..
T Consensus       258 ~ng~~V~~  265 (466)
T PHA03270        258 EGGDEVFA  265 (466)
T ss_pred             eCCccccC
Confidence            99998854

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.09  E-value=0.0041  Score=42.06  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=40.8

Q ss_pred             CceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEEeCCE----EEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHTFSTK----SILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ....+..+..++|.|.+.|. |. ..++|+++|..+..+.. ......+..    +.|.+..-.  ....|+|.+.+..
T Consensus         9 s~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697           9 SKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             CHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            33344456678999999994 54 46899999988654311 111111221    234444322  2345999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.08  E-value=0.049  Score=45.98  Aligned_cols=116  Identities=9%  Similarity=0.064  Sum_probs=67.1

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeccee---eee-eccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEE
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYAL---SDL-SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKW  167 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~-~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W  167 (283)
                      ....|.|.++...|+|.|+-...+....   ... .......+|.+...+  ..+..|+...-.|.+..+ |.  ..++|
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrW  282 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSW  282 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEE
Confidence            4678999999999999665544443221   111 111223455444433  245689999999999876 43  36899


Q ss_pred             EeCCEecCCCCC--eEE-EEe-----CCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        168 FREDFPITSSPD--FQI-HTF-----STKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       168 ~k~~~~~~~~~~--~~~-~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |+||..+.....  ... ...     ...++|.+.+......-..+|.+.-..
T Consensus       283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r  335 (490)
T PHA03271        283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ  335 (490)
T ss_pred             EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence            999988754321  111 111     123345554433334448899875433

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.08  E-value=0.0037  Score=41.07  Aligned_cols=65  Identities=11%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             CCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCeE-EE-EeCCE----EEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        147 EQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDFQ-IH-TFSTK----SILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~~-~~-~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+..+.|.|.+.+. |.. .+.|++++..+....... .. ..+..    +.|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            37889999999985 544 799999999876543221 11 12222    245555   55566899999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.04  E-value=0.0067  Score=42.05  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--C-CEEEEEeCCE-ec--------------CCCCCeEEEE--eCCEEEEEEcCCCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--L-PTIKWFREDF-PI--------------TSSPDFQIHT--FSTKSILIMRQVFM  198 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~-~~~~W~k~~~-~~--------------~~~~~~~~~~--~~~~~~l~i~~~~~  198 (283)
                      .+....+..|..++|.|.++|..  . -.+.|+|... .+              ....++.+..  .....+|.|.++..
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            44556778888999999997743  2 4678988521 11              0112222222  33456899999999


Q ss_pred             CCCEEEEEEE
Q psy14060        199 EDSGVFAVIA  208 (283)
Q Consensus       199 ~d~G~Y~C~a  208 (283)
                      +|.+.|.|..
T Consensus        84 ~DTa~Y~Ca~   93 (115)
T cd05721          84 NQTDIYFCKI   93 (115)
T ss_pred             HHCeEEEEEe
Confidence            9999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.04  E-value=0.001  Score=43.65  Aligned_cols=26  Identities=8%  Similarity=0.312  Sum_probs=22.6

Q ss_pred             EEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060        254 ARFDAKISA-TKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       254 v~L~C~~~g-~p~~~v~W~~~g~~l~~  279 (283)
                      +.|.|.+.| +|.+.++|+++|+++..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~   28 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDG   28 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccC
Confidence            689999987 68889999999998764

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.96  E-value=0.00089  Score=43.50  Aligned_cols=26  Identities=4%  Similarity=0.072  Sum_probs=22.4

Q ss_pred             EEEEEEEE-eeCCCeeEEeeCCEEecC
Q psy14060        254 ARFDAKIS-ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       254 v~L~C~~~-g~p~~~v~W~~~g~~l~~  279 (283)
                      +.|+|... +.|.++|+||+||++|..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~   28 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKG   28 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCC
Confidence            68999986 578889999999999954

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.90  E-value=0.0061  Score=37.73  Aligned_cols=49  Identities=10%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+.|.|.|..    ..+|.|++ |..+....         ..+|.+-.......|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            3578999965    25699999 55443221         23588888889999999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG1480|consensus

Probab=96.85  E-value=0.00083  Score=60.42  Aligned_cols=164  Identities=15%  Similarity=0.176  Sum_probs=96.2

Q ss_pred             CCCceeeecCC-eeeecCcEEEEEEEccCccce-----EEeecCCCEEEEEc----C---CEEEEEEccCCCCCCe---E
Q psy14060         48 PEPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-----RKITATETTEMEHK----G---KIQERVVDASELDDDG---Y  111 (283)
Q Consensus        48 ~~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-----~~~~~~~~~~~~~~----~---~~~~L~i~~~~~~D~G---~  111 (283)
                      ..|+|...+.. .+..+..+.|.|.+...+.|.     .++.......+...    +   ......|.....++.|   .
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence            55666654444 345556799999997666544     22222221111100    0   1223444444444544   5


Q ss_pred             EEEE--EEecceeeee--eccCC-CCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEe
Q psy14060        112 YAIT--ERKYYALSDL--SEQKP-AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTF  185 (283)
Q Consensus       112 Y~C~--a~n~~~~~~~--~~~~~-~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~  185 (283)
                      |.|.  +....|....  ..+.. .....|...+....+..+..+.+.|.. .+.|...+.|++++..+.+..+......
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d  182 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD  182 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence            7774  4433332111  11111 112234445556678888888898876 5677888999999988877444333333


Q ss_pred             CCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        186 STKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       186 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .   .+.+..+...|.|+|+|++.|-.+.
T Consensus       183 ~---~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  183 H---NLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             C---Cccccchhhhhcccceeeeehhhcc
Confidence            3   4889999999999999999987655

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.84  E-value=0.011  Score=38.78  Aligned_cols=60  Identities=3%  Similarity=-0.015  Sum_probs=43.8

Q ss_pred             eeeecCcEEEEEEEccC--c--cceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGD--K--EIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~--~--~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+..|++++|+|.....  |  .| +++............+..+|.+..+...|+|..+|.....
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i-~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKV-EWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccE-EEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            47788999999999553  3  33 5665554433333346788999999999999999987544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.83  E-value=0.0053  Score=46.17  Aligned_cols=58  Identities=12%  Similarity=0.113  Sum_probs=38.0

Q ss_pred             eeeecCcEEEEEEEc-cCc--cceEEee------------------cCCCEE-EEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKK-GDK--EIVRKIT------------------ATETTE-MEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~--~i~~~~~------------------~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +|.+|++|.|.|... +..  .+. |..                  ..+|+. +...-....|+|.+++.+|+|.|.|..
T Consensus        26 ~V~ege~VtLsCs~t~s~~~~qVt-WkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         26 TVSEHVNVKISCNKTSSFNSILIT-WKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEcCCCCEEEEEecCCCCccceEE-EEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            577888999999974 322  222 111                  112443 233334678999999999999999965


Q ss_pred             E
Q psy14060        117 R  117 (283)
Q Consensus       117 ~  117 (283)
                      .
T Consensus       105 ~  105 (189)
T PHA02987        105 N  105 (189)
T ss_pred             E
Confidence            4

>KOG0613|consensus

Probab=96.83  E-value=0.0026  Score=60.59  Aligned_cols=203  Identities=12%  Similarity=0.072  Sum_probs=119.3

Q ss_pred             CcEEEEEEEccCc--cce---EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee---ee---------
Q psy14060         64 KSQQVQKEKKGDK--EIV---RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD---LS---------  126 (283)
Q Consensus        64 ~~v~l~C~~~g~~--~i~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~---~~---------  126 (283)
                      ....+.|.+.++.  .+.   ..+.....     .-+...+.|.+....+.+.|+|...+..+-..   ..         
T Consensus       245 s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~  319 (1205)
T KOG0613|consen  245 SDRKIQLTLRAPRGPYSAHILGYLIEQRK-----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKP  319 (1205)
T ss_pred             hheeeeEEeecCCCchHHHHhcchhhhcc-----cCCCccccccccCCccccceeeecccCCcccceeeeEEeecccccc
Confidence            3588899888776  211   11111111     11234556677777778888887665544111   00         


Q ss_pred             -----ccCCCCC---CeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCC--CeEEEEeCCEEEEEEcC
Q psy14060        127 -----EQKPAKP---PVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSP--DFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       127 -----~~~~~~~---p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~  195 (283)
                           ......+   +.+...........+..+.+.|...+.+.|. +.||++........  ............+.+..
T Consensus       320 ~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~  399 (1205)
T KOG0613|consen  320 GPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKD  399 (1205)
T ss_pred             CchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhh
Confidence                 0000111   2222233444566778899999999988886 99999766554332  22233334455688888


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCC--CeEEEEEEEEeeCCC--eeEEe
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG--QLARFDAKISATKPL--DVYWL  271 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g--~~v~L~C~~~g~p~~--~v~W~  271 (283)
                      +...+.+.|.|.+.|..|.........+......     ..|.............+  +.+.+.|.+.+.+.+  .++|+
T Consensus       400 ~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g-----t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~  474 (1205)
T KOG0613|consen  400 AGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG-----TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTI  474 (1205)
T ss_pred             cCcccccccccceeccCCcccccchhhcccccCC-----CCCccccccccccccccCCcccccccCCCCccccceeEeec
Confidence            9999999999999999988766655555432110     22333333333333444  778889988887755  46666


Q ss_pred             eCCEE
Q psy14060        272 KVSSL  276 (283)
Q Consensus       272 ~~g~~  276 (283)
                      +++-+
T Consensus       475 ~~~~~  479 (1205)
T KOG0613|consen  475 KDGLP  479 (1205)
T ss_pred             cCCcc
Confidence            66543

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.82  E-value=0.0064  Score=42.87  Aligned_cols=33  Identities=6%  Similarity=0.008  Sum_probs=24.5

Q ss_pred             CCEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         86 ETTEMEHK--GKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        86 ~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +++.....  .....|.|.++..+|+|.|.|.+..
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            34544432  2456899999999999999997754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.77  E-value=0.0036  Score=42.47  Aligned_cols=75  Identities=11%  Similarity=0.037  Sum_probs=42.8

Q ss_pred             EecCCceeecCCCcEEEEEEEeee--cC-CEEEEEeCCEecCCCCCeEEEE-eCC---EEEEEEcCCCCCCCEEEEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD--PL-PTIKWFREDFPITSSPDFQIHT-FST---KSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~--p~-~~~~W~k~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      +..+....+..+..++|.|.+.+.  |. ..+.|.+++.. .......... ++.   .+.|.+..-.......|+|.+.
T Consensus         8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~   86 (99)
T cd04986           8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVT   86 (99)
T ss_pred             EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEE
Confidence            334444455577889999999984  43 47999999875 1100000111 111   2245554333344467999998


Q ss_pred             eCC
Q psy14060        210 NRG  212 (283)
Q Consensus       210 n~~  212 (283)
                      +..
T Consensus        87 H~~   89 (99)
T cd04986          87 HPE   89 (99)
T ss_pred             CCC
Confidence            764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.76  E-value=0.012  Score=39.71  Aligned_cols=65  Identities=17%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEE-eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHT-FST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++.++|.|.+.|. |. ..++|+|+|.. ....  ...... .+.   .+.|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999995 54 47899999997 3221  001111 121   1234444332223568999998764

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.76  E-value=0.0019  Score=44.03  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +..+|.|.+++.+|+|.|+|...+.
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~   85 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATF   85 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeC
Confidence            5688999999999999999999883

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.69  E-value=0.023  Score=38.34  Aligned_cols=67  Identities=10%  Similarity=-0.043  Sum_probs=40.0

Q ss_pred             CcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        149 DQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       149 ~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ....+.|.+. |+|.+.|+|+++...... ........+.   .+.|.+......|...|+|.+.|..-...
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~   86 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP   86 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            3578999886 678999999997211100 0000111111   23566665555666799999998764433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.66  E-value=0.0037  Score=42.85  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             EEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        247 VINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       247 ~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .+..|..++|.|.+.|..+.  .++|++||+++..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            34457889999999995433  5899999998753

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=96.64  E-value=0.088  Score=40.26  Aligned_cols=120  Identities=11%  Similarity=0.174  Sum_probs=74.2

Q ss_pred             CceeecCCCcEEEEEEEeeec-CCEEEEEeCCEe-cC---------------C---CCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFP-IT---------------S---SPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~-~~---------------~---~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+.....+++|.|.|...... -....|+++... +.               +   ...+.....+..++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            344567799999999864322 245789885432 21               0   112445666778899999999999


Q ss_pred             CEEEEEEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC-eEEEEEEEEeeCCCeeEEeeCCEE
Q psy14060        201 SGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ-LARFDAKISATKPLDVYWLKVSSL  276 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~p~~~v~W~~~g~~  276 (283)
                      .|-|+|.+....+.... ..-|.|+.           -.+..     ...++. .-.+.|-+-..-.+-..|.-+|..
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~-----------~~V~~-----~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQK-----------EDILY-----VVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEec-----------ceEEE-----EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            99999999876544332 34444432           11111     122233 345689876554443489888875

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.61  E-value=0.0024  Score=43.68  Aligned_cols=25  Identities=12%  Similarity=0.177  Sum_probs=22.3

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ...+|.|.+++.+|+|.|.|...+.
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~   86 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITF   86 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeC
Confidence            5778999999999999999988763

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.51  E-value=0.0059  Score=41.11  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             cCCCeEEEEEEEEee-CC-CeeEEeeCCEEecCC
Q psy14060        249 NVGQLARFDAKISAT-KP-LDVYWLKVSSLSDVK  280 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~~  280 (283)
                      ..|+.+.|.|.+.|. |. +.++|++||+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~   44 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSG   44 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence            468899999999997 53 479999999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.48  E-value=0.0084  Score=41.77  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             eEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecC
Q psy14060        246 AVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDV  279 (283)
Q Consensus       246 ~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~  279 (283)
                      .....|+.++|.|.+.|. |. ..++|++||+.+..
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            345678889999999884 53 37999999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA02633 hypothetical protein; Provisional

Probab=96.47  E-value=0.011  Score=35.63  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      ..|.|-++..+|+|.|.|..+|..-....+..+.|..
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            3588999999999999999998877777778888775

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.45  E-value=0.0049  Score=40.23  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             EEEEEEEEe-eCCCeeEEeeCCEEecCC
Q psy14060        254 ARFDAKISA-TKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       254 v~L~C~~~g-~p~~~v~W~~~g~~l~~~  280 (283)
                      +.|.|.+.| .|.+.|+||++|+++...
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~   29 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGK   29 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCc
Confidence            689999976 577799999999998754

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.43  E-value=0.0049  Score=40.50  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=22.8

Q ss_pred             EEEEEEEEe-eCCCeeEEeeCCEEecCC
Q psy14060        254 ARFDAKISA-TKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       254 v~L~C~~~g-~p~~~v~W~~~g~~l~~~  280 (283)
                      +.|.|.+.| +|.+.|+|++||+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~   29 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA   29 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc
Confidence            689999987 488899999999987653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.42  E-value=0.0046  Score=40.53  Aligned_cols=25  Identities=12%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             EEEEEEEEe-eCCCeeEEeeCCEEec
Q psy14060        254 ARFDAKISA-TKPLDVYWLKVSSLSD  278 (283)
Q Consensus       254 v~L~C~~~g-~p~~~v~W~~~g~~l~  278 (283)
                      +.|.|.+.+ +|.+.+.|++||+.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            689999976 4888999999999885

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.41  E-value=0.011  Score=39.84  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             CCeEEEEEEEEee-CCC-eeEEeeCCEEe
Q psy14060        251 GQLARFDAKISAT-KPL-DVYWLKVSSLS  277 (283)
Q Consensus       251 g~~v~L~C~~~g~-p~~-~v~W~~~g~~l  277 (283)
                      |+.++|.|.+.|. |.. .++|+++|+.+
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~   42 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDS   42 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence            6789999999995 544 79999999743

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.38  E-value=0.0073  Score=40.16  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             CCeEEEEEEEE-eeCCCeeEEeeCCEEe
Q psy14060        251 GQLARFDAKIS-ATKPLDVYWLKVSSLS  277 (283)
Q Consensus       251 g~~v~L~C~~~-g~p~~~v~W~~~g~~l  277 (283)
                      |+.+.|.|.+. ++|.|.++|+.+|..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            78999999775 6788899999999877

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.38  E-value=0.019  Score=38.59  Aligned_cols=66  Identities=15%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             ecCCCcEEEEEEEee-ecC--CEEEEEeCCEecCCCCCeEE----EEeCCEEEEEEcCCCCCCCE-EEEEEEEeC
Q psy14060        145 AFEQDQARFEVEFDG-DPL--PTIKWFREDFPITSSPDFQI----HTFSTKSILIMRQVFMEDSG-VFAVIAENR  211 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g-~p~--~~~~W~k~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~  211 (283)
                      +..|..+++.|.+.+ +|.  ..+.|++....+.......-    ........+.+... ++|.| +|+|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            478999999999975 455  57999997766544321110    00112234555554 66666 999998643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.37  E-value=0.0053  Score=40.34  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=21.9

Q ss_pred             EEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060        254 ARFDAKISA-TKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       254 v~L~C~~~g-~p~~~v~W~~~g~~l~~  279 (283)
                      +.|.|.+.| +|...++|++||+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC
Confidence            689999987 67778999999999753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.35  E-value=0.0049  Score=39.89  Aligned_cols=30  Identities=10%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             CCEEEEEc--CCEEEEEEccCCCCCCeEEEEE
Q psy14060         86 ETTEMEHK--GKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        86 ~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      .++.+...  .+...|.|.+++.+|+|.|.|.
T Consensus        49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            45554433  5788999999999999999995

>PHA02633 hypothetical protein; Provisional

Probab=96.35  E-value=0.0037  Score=37.69  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=22.9

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ....|.|.++..+|+|.|.|..+|..-
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~   42 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETY   42 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCe
Confidence            345688999999999999999987754

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.32  E-value=0.0067  Score=41.44  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=26.2

Q ss_pred             ceEEcCCCeEEEEEEEEee-C-CCeeEEeeCCEEec
Q psy14060        245 SAVINVGQLARFDAKISAT-K-PLDVYWLKVSSLSD  278 (283)
Q Consensus       245 ~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~l~  278 (283)
                      ......++.++|.|.+.|. | ...+.|++||+.+.
T Consensus        11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            3344567889999999984 4 33799999999985

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.30  E-value=0.0045  Score=41.86  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.7

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ...+|.|.|++.+|+|.|+|....-
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~   82 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTY   82 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeC
Confidence            4688999999999999999977654

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>TIGR00864 PCC polycystin cation channel protein

Probab=96.29  E-value=1.5  Score=46.51  Aligned_cols=223  Identities=11%  Similarity=0.044  Sum_probs=125.4

Q ss_pred             eEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EE-eecCCCEEEEEcCCEEE
Q psy14060         21 KSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RK-ITATETTEMEHKGKIQE   98 (283)
Q Consensus        21 ~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~-~~~~~~~~~~~~~~~~~   98 (283)
                      ...+|+|..|..+...++.|..+....   .... ....+..++.|.|.-.+.+...++ +| +.++.....  .....+
T Consensus      1674 VtL~aSN~vG~~t~s~~i~v~epi~~L---~L~a-S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~--s~p~~t 1747 (2740)
T TIGR00864      1674 IFLQAANLLGQATADCTIDFLEPAGNL---MLQA-SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLET--SEPFMS 1747 (2740)
T ss_pred             EEEEEeecccceeeEEEEEEEEEcCce---EEec-cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCccc--CCCceE
Confidence            467899999999888888887754321   1111 112255567788887766555433 22 222211110  011001


Q ss_pred             EEEccCCCCCCeEEEE--EEEecceeee-eeccCCCCCCe---EEecCC-ce-eecCCCcEEEEEEEeeecCCEEEEEeC
Q psy14060         99 RVVDASELDDDGYYAI--TERKYYALSD-LSEQKPAKPPV---FTKKIQ-PC-RAFEQDQARFEVEFDGDPLPTIKWFRE  170 (283)
Q Consensus        99 L~i~~~~~~D~G~Y~C--~a~n~~~~~~-~~~~~~~~~p~---~~~~~~-~~-~~~~g~~v~l~C~~~g~p~~~~~W~k~  170 (283)
                           -+....|.|.-  .+.|..+... ...+.+..+..   +..... .. .+..|..+.|.-.+.......+.|..+
T Consensus      1748 -----Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~ 1822 (2740)
T TIGR00864      1748 -----HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAID 1822 (2740)
T ss_pred             -----EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeC
Confidence                 12456788887  4666666322 22223322222   211111 11 344566777766654334456788776


Q ss_pred             CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE--EEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEE
Q psy14060        171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV--IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI  248 (283)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v  248 (283)
                      +..-...         ..  .   ..+..+.|.|+.  .|.|..+....+..+.|+++         .-.+........+
T Consensus      1823 ~g~s~~g---------k~--v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~---------I~~L~L~as~~~~ 1879 (2740)
T TIGR00864      1823 GGSSKMG---------KH--A---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEP---------IFGLELKASKKIA 1879 (2740)
T ss_pred             CCCcccc---------ce--e---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEe---------cceEEEecccccc
Confidence            5421111         10  1   134567899976  57788888888888888862         2244444455577


Q ss_pred             cCCCeEEEEEEEEeeCCCeeEEeeC-CEEe
Q psy14060        249 NVGQLARFDAKISATKPLDVYWLKV-SSLS  277 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~p~~~v~W~~~-g~~l  277 (283)
                      ..|+.++|.+.....+...+.|..+ |.+.
T Consensus      1880 ~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~ 1909 (2740)
T TIGR00864      1880 AIGEKVEFQILLAAGSAVNFRLQIGGAAPE 1909 (2740)
T ss_pred             cCCCEEEEEEEecCCCceEEEEEeCCCCce
Confidence            8999999999887666778999764 4443

Note: this model has been restricted to the amino half because for technical reasons.

>cd00096 Ig Immunoglobulin domain

Probab=96.26  E-value=0.01  Score=36.43  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ....|.|.+++..|.|.|.|.+.+..
T Consensus        41 ~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          41 GSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eEEEEEECccCcccCcEEEEEEecCc
Confidence            56789999999999999999887764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.26  E-value=0.049  Score=46.68  Aligned_cols=81  Identities=17%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--  266 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--  266 (283)
                      ..|.|..++..+.|.|+=...+..+.......+.|...        .+|.+...+  .-+.+|+...-.|.+..+-++  
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y--------r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~S  267 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY--------NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSS  267 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccC--CccccCCCceEEEEeeeecCCCc
Confidence            35999999999999998554455454444455555432        356655433  346899999999999886555  


Q ss_pred             -eeEEeeCCEEecC
Q psy14060        267 -DVYWLKVSSLSDV  279 (283)
Q Consensus       267 -~v~W~~~g~~l~~  279 (283)
                       .+.|+.||.++..
T Consensus       268 v~~rWf~dg~~V~~  281 (486)
T PHA03273        268 VKLRWYKNAKEVDF  281 (486)
T ss_pred             eEEEEEeCCeeccc
Confidence             5999999999884

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.24  E-value=0.01  Score=41.51  Aligned_cols=27  Identities=11%  Similarity=-0.016  Sum_probs=23.7

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..+|.|.+++.+|+|.|.|...+...
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~  103 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIE  103 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCc
Confidence            578999999999999999998876644

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.23  E-value=0.0082  Score=42.05  Aligned_cols=37  Identities=14%  Similarity=-0.010  Sum_probs=27.4

Q ss_pred             CCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        243 ISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       243 ~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      +....+..++.++|.|.+.|. |.. .++|++||+.+..
T Consensus        10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~   48 (115)
T cd05769          10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD   48 (115)
T ss_pred             cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence            333344567789999999985 443 7999999998764

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.23  E-value=0.022  Score=39.55  Aligned_cols=57  Identities=5%  Similarity=-0.036  Sum_probs=38.3

Q ss_pred             eeecCcEEEEEEEccCc--c-ce-----------EEe-----------ecCCC--EEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--E-IV-----------RKI-----------TATET--TEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~-i~-----------~~~-----------~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      +..|+.++|.|.+.|..  . ..           .+.           ....+  ...+...+...|.|.+++.+|++.|
T Consensus        10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y   89 (115)
T cd05721          10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY   89 (115)
T ss_pred             EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence            55667899999997654  1 21           011           01122  2334456789999999999999999


Q ss_pred             EEEE
Q psy14060        113 AITE  116 (283)
Q Consensus       113 ~C~a  116 (283)
                      .|..
T Consensus        90 ~Ca~   93 (115)
T cd05721          90 FCKI   93 (115)
T ss_pred             EEEe
Confidence            9965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.13  E-value=0.021  Score=38.40  Aligned_cols=30  Identities=13%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             cCCCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060        249 NVGQLARFDAKISATKPL--DVYWLKVSSLSD  278 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~  278 (283)
                      ..|...+|.|.+.|.-++  .++|++||+.+.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            346677999999995333  689999999875

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.06  E-value=0.014  Score=39.46  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=25.2

Q ss_pred             EEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        247 VINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       247 ~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .+..+..++|.|.+.|. |.. .++|.+||+.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            34456778999999994 433 6899999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.04  E-value=0.025  Score=38.09  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             CCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        250 VGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .|+..+|.|.+.|. |.. .++|.+||+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~   45 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD   45 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence            45667999999994 543 6899999998754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=95.99  E-value=0.007  Score=42.08  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=23.0

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +..+|.|++++.+|+|.|.|......
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~   95 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGI   95 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECC
Confidence            57899999999999999999887643

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.96  E-value=0.082  Score=44.93  Aligned_cols=81  Identities=10%  Similarity=0.062  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--  266 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--  266 (283)
                      ..|.|..++....|.|+=..-+..+.......+.|...        .+|.+...+  .-+..|+...-.|.+..+-++  
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y--------r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~S  251 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF--------RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDR  251 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccC--CccccCCCceEEEEeeeecCCCc
Confidence            35999999999999999887666654443333444432        356655433  346789999999999886555  


Q ss_pred             -eeEEeeCCEEecC
Q psy14060        267 -DVYWLKVSSLSDV  279 (283)
Q Consensus       267 -~v~W~~~g~~l~~  279 (283)
                       .+.||.||.++..
T Consensus       252 v~lrWf~ng~~V~~  265 (466)
T PHA03270        252 AAFRWFEGGDEVFA  265 (466)
T ss_pred             eEEEEEeCCccccC
Confidence             5999999998864

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=95.87  E-value=0.03  Score=37.71  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=25.1

Q ss_pred             cCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        249 NVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      ..|+.++|.|.+.|. |.. .++|++||+.+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            367889999999995 433 6899999998765

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=95.86  E-value=0.018  Score=38.83  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             CCCeEEEEEEEEee-CC-CeeEEeeCCEEe
Q psy14060        250 VGQLARFDAKISAT-KP-LDVYWLKVSSLS  277 (283)
Q Consensus       250 ~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l  277 (283)
                      ..+.+.|.|.+.|. |. ..++|++||+.+
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            45668999999984 54 378999999986

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.86  E-value=0.032  Score=37.66  Aligned_cols=27  Identities=7%  Similarity=0.020  Sum_probs=22.0

Q ss_pred             CCCeEEEEEEEEee-CCC-eeEEeeCCEE
Q psy14060        250 VGQLARFDAKISAT-KPL-DVYWLKVSSL  276 (283)
Q Consensus       250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~  276 (283)
                      .++.++|.|.+.|. |.. .++|++||+.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            46678999999995 433 6899999997

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=95.85  E-value=0.014  Score=49.87  Aligned_cols=90  Identities=7%  Similarity=0.047  Sum_probs=64.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEe---CCEe--cCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR---EDFP--ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k---~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +..-+....+..+++..+.|-+.|.+.+.++|.+   ++..  +.....+..........|.|-+....|+|.|+|.+.+
T Consensus       199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc  278 (560)
T KOG4597|consen  199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC  278 (560)
T ss_pred             cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence            3334455678889999999999999999999965   2222  2222111111122355799999999999999999999


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                      .+|.....+.+.+..
T Consensus       279 g~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  279 GAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccceeeccceeeeec
Confidence            999988887777654

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.84  E-value=0.071  Score=35.99  Aligned_cols=70  Identities=11%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             ceeecCCCcEEE-EEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        142 PCRAFEQDQARF-EVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       142 ~~~~~~g~~v~l-~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...+..|+.+.+ .|.+ .|+|.+.|+|+.+...... ........+.   .+.+.+......|.-.++|.+.+..
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            345667777777 8887 5679999999987332211 0000000111   2346665555566779999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>smart00407 IGc1 Immunoglobulin C-Type

Probab=95.78  E-value=0.024  Score=36.32  Aligned_cols=25  Identities=24%  Similarity=0.402  Sum_probs=20.2

Q ss_pred             EEEEEEEEee-CC-CeeEEeeCCEEec
Q psy14060        254 ARFDAKISAT-KP-LDVYWLKVSSLSD  278 (283)
Q Consensus       254 v~L~C~~~g~-p~-~~v~W~~~g~~l~  278 (283)
                      ++|.|.+.|. |. ..++|++||+++.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~   28 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVT   28 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence            6899999986 44 4799999999743

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.65  E-value=0.014  Score=39.45  Aligned_cols=31  Identities=10%  Similarity=0.158  Sum_probs=24.0

Q ss_pred             eEEcCCCeEEEEEEEEee--CCC-eeEEeeCCEE
Q psy14060        246 AVINVGQLARFDAKISAT--KPL-DVYWLKVSSL  276 (283)
Q Consensus       246 ~~v~~g~~v~L~C~~~g~--p~~-~v~W~~~g~~  276 (283)
                      ..+..|+.++|.|.+.|.  |.. .++|+|||..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            345678999999999998  333 6899998743

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.43  E-value=0.053  Score=35.48  Aligned_cols=30  Identities=20%  Similarity=0.218  Sum_probs=24.6

Q ss_pred             CCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        250 VGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .++.+.|.|.+.+. |.. .|.|++||+.+..
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~   38 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE   38 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence            48899999999985 433 6999999998764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=95.23  E-value=5.3  Score=42.77  Aligned_cols=222  Identities=15%  Similarity=0.103  Sum_probs=123.9

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeec-CC--eeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCC
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVH-GK--EIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGK   95 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~--~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~   95 (283)
                      ...-+|.|..|.......+.|..+..   ...+.... +.  -+..|..+.|.=+++....+. .|.-......   .+.
T Consensus      1757 ~VtVta~N~vss~~~s~~V~VqepV~---GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~---~gk 1830 (2740)
T TIGR00864      1757 LVTMKAFNELGSANASEEVDVQEPIS---GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK---MGK 1830 (2740)
T ss_pred             EEEEEEEccccccceeEEEEEEeccc---cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc---ccc
Confidence            34568999999988888888877643   12222111 11  133455677766654333332 2221111101   112


Q ss_pred             EEEEEEccCCCCCCeEEEE--EEEeccee-eeeeccCCCCCC-eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC
Q psy14060         96 IQERVVDASELDDDGYYAI--TERKYYAL-SDLSEQKPAKPP-VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED  171 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C--~a~n~~~~-~~~~~~~~~~~p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~  171 (283)
                      ...     .+..++|.|+-  .|.|..+. .....+.+..++ .+........+..|+.+.|.+.+...+...+.|...+
T Consensus      1831 ~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1831 HAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred             eeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence            222     45679999998  56777663 223334444444 2333445556778999999999877677888996653


Q ss_pred             E-ecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE--EEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCC-ceE
Q psy14060        172 F-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVF--AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SAV  247 (283)
Q Consensus       172 ~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~-~~~  247 (283)
                      . ......       +......   -  ..-|.|  ...+.|..+.......+.|.++         -.-+..... ...
T Consensus      1906 gs~~~~t~-------~~t~~Hs---Y--~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~---------V~gL~I~~~c~~~ 1964 (2740)
T TIGR00864      1906 AAPEVLQP-------GPRFSHS---F--PRVDDHMVNLRAKNEVSCAQANLHIEVLEA---------VRGLQIPDCCAAG 1964 (2740)
T ss_pred             CCceeecC-------CCeEEee---c--CCCCcEEEEEEEEeccceeeeeEEEEEEEe---------ccceEecCCcccc
Confidence            3 221101       1110111   1  123445  5567888888888777777652         112222111 112


Q ss_pred             EcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060        248 INVGQLARFDAKISATKPLDVYWLKV  273 (283)
Q Consensus       248 v~~g~~v~L~C~~~g~p~~~v~W~~~  273 (283)
                      +..|+..+|.-.+....+..+.|+++
T Consensus      1965 ~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864      1965 IATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred             eecCceEEEEEEEecCCceEEEEEee
Confidence            68899999998886545567999865

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.13  E-value=0.17  Score=43.70  Aligned_cols=81  Identities=11%  Similarity=0.038  Sum_probs=54.9

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeC-CceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-  266 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-  266 (283)
                      ..|.|.++...+.|.|+=+..+. .+.......+.|...        .+|.+...  ..-+.+|+...-.|.+..+-++ 
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~  358 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPH  358 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--------cCCCcccc--CCccccCCCceEEEEeeeecCCC
Confidence            46999999999999997554332 233333333444332        25554443  3346899999999999886555 


Q ss_pred             --eeEEeeCCEEecC
Q psy14060        267 --DVYWLKVSSLSDV  279 (283)
Q Consensus       267 --~v~W~~~g~~l~~  279 (283)
                        .+.|++||.++..
T Consensus       359 SvrlrWf~ng~~V~~  373 (566)
T PHA03269        359 SVIVKWTSNFGNIGK  373 (566)
T ss_pred             ceEEEEEeCCcccCc
Confidence              5999999988874

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.09  E-value=0.9  Score=38.72  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL  266 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~  266 (283)
                      ..|.|.++...++|.|.-...+....  ......+.+..         .||.+...+  .-+..|+...-.|.+..+-+|
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP  275 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------RPASVDVLA--PPVLSGENYKASCIVRHFYPP  275 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---------cCCCccccC--CccccCCCceEEEEeeeecCC
Confidence            46899999999999775555443332  22334444444         366555433  346789999999999886555


Q ss_pred             ---eeEEeeCCEEecC
Q psy14060        267 ---DVYWLKVSSLSDV  279 (283)
Q Consensus       267 ---~v~W~~~g~~l~~  279 (283)
                         .+.|++||.++..
T Consensus       276 ~SvrlrWf~nG~~V~~  291 (490)
T PHA03271        276 GSVYVSWRQNGNIATP  291 (490)
T ss_pred             CceEEEEEeCCccccC
Confidence               5999999988754

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.59  E-value=0.09  Score=37.41  Aligned_cols=79  Identities=10%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             ecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCC--CCCeEEEE-----------eCCEEEEEEcCCCCCCCEEEEE
Q psy14060        145 AFEQDQARFEVEFDGD-----PLPTIKWFREDFPITS--SPDFQIHT-----------FSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~--~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ..-+++|.|.|.+...     +.-.+.|..++..+..  +.......           ..+.++|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3447899999998652     2346899998876531  11111100           011234666553333 799999


Q ss_pred             EEEeCCceeEEEEEEEEE
Q psy14060        207 IAENRGGKAKCSANLVVE  224 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~  224 (283)
                      .+............|...
T Consensus       103 eVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  103 EVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-
T ss_pred             EEEecCCCceEEEEEEEE
Confidence            999887777766666653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.58  E-value=0.063  Score=42.64  Aligned_cols=49  Identities=16%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             cCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        161 PLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       161 p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..|.+.|... ++.+..+.++.+...+   .|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            4689999875 4555555566666544   49999999999999999987654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.12  E-value=0.073  Score=36.10  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=27.3

Q ss_pred             EEecCCceEEcCCCeEEEEEEEEeeC--CC-eeEEeeCCEE
Q psy14060        239 FLTTISSAVINVGQLARFDAKISATK--PL-DVYWLKVSSL  276 (283)
Q Consensus       239 ~~~~~~~~~v~~g~~v~L~C~~~g~p--~~-~v~W~~~g~~  276 (283)
                      ++.++....+..+..++|.|.+.+.-  .. .|+|.++|+.
T Consensus         7 ~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           7 SLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             EEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            33334444555788999999999843  32 6999999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=93.61  E-value=0.25  Score=37.89  Aligned_cols=83  Identities=5%  Similarity=0.033  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee--eeccCCCCCCeEEecCCceeecCC-CcEEEEEEEeeec
Q psy14060         85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD--LSEQKPAKPPVFTKKIQPCRAFEQ-DQARFEVEFDGDP  161 (283)
Q Consensus        85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g-~~v~l~C~~~g~p  161 (283)
                      ...+..+-.+...+|+|.++..+..|-|+|.+....+...  ..-+.++.-..+.      ...++ ..-.+.|-+-...
T Consensus        88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~  161 (251)
T PHA02982         88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKH  161 (251)
T ss_pred             ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEecc
Confidence            3455666677889999999999999999999987654221  1222221111111      11122 2346788875443


Q ss_pred             CCEEEEEeCCEe
Q psy14060        162 LPTIKWFREDFP  173 (283)
Q Consensus       162 ~~~~~W~k~~~~  173 (283)
                      .+-..|..+|..
T Consensus       162 ~dvp~W~V~GVv  173 (251)
T PHA02982        162 GDVPRFIVAGIV  173 (251)
T ss_pred             CCCccEEEeeEE
Confidence            332388877764

>PHA03042 CD47-like protein; Provisional

Probab=92.98  E-value=0.88  Score=36.50  Aligned_cols=68  Identities=18%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             CCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        147 EQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      -++++.+.|.+..-     ..-.+.|..++..+......      ..++|.+.... .-.|+|+|.+.+..........+
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence            46789999998652     24568999998876432211      12345554333 34799999998766544444333

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=92.79  E-value=0.21  Score=30.76  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             cCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         63 AKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        63 g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      |.+|+|+|-..+.. | .|......    ..+....+.+.+-. +++|.|.|.+.+.
T Consensus         7 GTtVtlTCP~~~~~-i-~W~~n~~~----~~g~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           7 GTTVTVTCPLSGDD-I-KWKKNDQV----SQGSDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             ccEEEEECCCCCCC-c-eEEeCCcc----CCCCCceEEeeccC-CCCceEEEEeCCC
Confidence            55899999654333 3 33332211    11111233344444 8999999988654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.54  E-value=0.79  Score=31.25  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=43.0

Q ss_pred             cEEEEEEEeeecCCE--EEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EEEEEE
Q psy14060        150 QARFEVEFDGDPLPT--IKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVV  223 (283)
Q Consensus       150 ~v~l~C~~~g~p~~~--~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v  223 (283)
                      ++...-...+.+...  ++|..+....... ..-++.......+|.|..+..+|+|.|.-.+++..|.... .+.+.|
T Consensus        29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            455555554444433  5565444433221 1112334444558999999999999999999998887633 344444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=91.07  E-value=1.6  Score=28.99  Aligned_cols=68  Identities=10%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             cCCceeecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .++...+..|++++..|.+...     ....+.|..++..++.. .+.... ...+.+.+.+........|.|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in-~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIN-DTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEES-TTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeC-CeEEEEEEccCCCCCceEEEEEE
Confidence            3455678899999999998532     34578999988866553 444333 34467888888776666777763

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.78  E-value=1.9  Score=36.15  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=17.3

Q ss_pred             cEEEEEEEeee-cC-CEEEEEeC
Q psy14060        150 QARFEVEFDGD-PL-PTIKWFRE  170 (283)
Q Consensus       150 ~v~l~C~~~g~-p~-~~~~W~k~  170 (283)
                      .+.|.|.+.|. |. ..+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999995 54 46899999

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=90.37  E-value=0.68  Score=28.82  Aligned_cols=47  Identities=15%  Similarity=0.039  Sum_probs=31.0

Q ss_pred             cEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         65 SQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        65 ~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .|.|.|.+  +..| .|+..... . ..  ...+|.+......-.|.|.|.+.+
T Consensus         8 ~V~L~C~~--~tsi-~W~kG~~~-~-~~--~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           8 KVFLKCNG--ATNI-TWKKGKEI-L-EV--SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             eEEEEecC--CCcE-EEecCccc-c-cc--cccEEeccCcccCCCcceEecCcc
Confidence            69999965  2233 45542221 1 11  156788888888889999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=90.28  E-value=0.49  Score=31.93  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=25.5

Q ss_pred             EcCCCeEEEEEEEEe-eCC--CeeEEeeCCEEecCC
Q psy14060        248 INVGQLARFDAKISA-TKP--LDVYWLKVSSLSDVK  280 (283)
Q Consensus       248 v~~g~~v~L~C~~~g-~p~--~~v~W~~~g~~l~~~  280 (283)
                      +.+|..+++.|.+.+ +|.  .++.|+++...+..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~   47 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK   47 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceeccc
Confidence            478999999999975 454  479999987765543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG0613|consensus

Probab=90.20  E-value=1.7  Score=42.45  Aligned_cols=134  Identities=10%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      .+.......++...+.|.+.+.+-+.+.|+-+.......       .....+..+.+....+.+.|+|...+..+.....
T Consensus       235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~  307 (1205)
T KOG0613|consen  235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFK  307 (1205)
T ss_pred             ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCccccee
Confidence            334445555666777777776555556555443322211       1123356777777788889999988877766555


Q ss_pred             EEEEEEeccCCCCCC------CCC---CeEEecCCceEEcCCCeEEEEEEEEeeCCCe-eEEeeCCEEecC
Q psy14060        219 ANLVVEEKRQGGRGG------VVP---PSFLTTISSAVINVGQLARFDAKISATKPLD-VYWLKVSSLSDV  279 (283)
Q Consensus       219 ~~l~v~~~~~~~~~~------~~~---p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~l~~  279 (283)
                      ..-.+.....-...+      ..+   |.+......+....+..+.+.|...+.+.|. +.|++++.....
T Consensus       308 v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~  378 (1205)
T KOG0613|consen  308 VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE  378 (1205)
T ss_pred             eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence            443332211100000      111   2222223344567778899999999998886 999998765443

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=90.18  E-value=11  Score=32.28  Aligned_cols=121  Identities=17%  Similarity=0.276  Sum_probs=72.3

Q ss_pred             eeecCCCcEEEEEEEee--ec-CCEEEEEeCCEecCC-----------------CCCeEEEEe------CCEEEEEEcCC
Q psy14060        143 CRAFEQDQARFEVEFDG--DP-LPTIKWFREDFPITS-----------------SPDFQIHTF------STKSILIMRQV  196 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g--~p-~~~~~W~k~~~~~~~-----------------~~~~~~~~~------~~~~~l~i~~~  196 (283)
                      ..+..|..+.|.|..+-  .. -..+.|+--+.++.+                 ...+.+...      -..++|+|..+
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            35666999999998863  22 246789876654431                 112333222      12458999999


Q ss_pred             CCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCe-EEEEEEEEee--CCCeeEEeeC
Q psy14060        197 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQL-ARFDAKISAT--KPLDVYWLKV  273 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~-v~L~C~~~g~--p~~~v~W~~~  273 (283)
                      ....+|-|.|.+....-.....--|.|..           ..+.     .-..+|.. -.+.|-+...  .++++.|.-+
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-----------~V~f-----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn  417 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHCFKVAD-----------HVFF-----KWNTEGDNETKVACYAAQYDMQPFSILWKSN  417 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhheEecc-----------EEEE-----EEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence            99999999999976533333333333332           1111     11234433 4567987654  3457999999


Q ss_pred             CEEecC
Q psy14060        274 SSLSDV  279 (283)
Q Consensus       274 g~~l~~  279 (283)
                      |.....
T Consensus       418 GV~~~G  423 (500)
T PHA02914        418 GVSFGG  423 (500)
T ss_pred             cEEecC
Confidence            876644

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=88.02  E-value=0.84  Score=30.83  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             eEEcCCCeEEE-EEEE-EeeCCCeeEEeeC
Q psy14060        246 AVINVGQLARF-DAKI-SATKPLDVYWLKV  273 (283)
Q Consensus       246 ~~v~~g~~v~L-~C~~-~g~p~~~v~W~~~  273 (283)
                      ..+.+|+.+.+ .|.+ .|.|.+.|+|+.+
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            45678888888 8887 4678889999986

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=87.82  E-value=0.6  Score=37.28  Aligned_cols=37  Identities=8%  Similarity=0.048  Sum_probs=28.3

Q ss_pred             EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         81 KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      .+.+..++++.   .+..|.+.+...+++|.|+|......
T Consensus        24 ~l~gn~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   24 PLSGNSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             ccCCCCeEEEc---cCceEEeeccccccCCceEEEEEEEe
Confidence            44555666666   45679999999999999999876553

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=86.71  E-value=6.6  Score=25.44  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=28.8

Q ss_pred             CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-eCCceeEEEEEE
Q psy14060        162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKAKCSANL  221 (283)
Q Consensus       162 ~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l  221 (283)
                      .+.+.|+..+..+....          ..+.......+|+|.+.|.|. +..-.......+
T Consensus        26 ~~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i   76 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEI   76 (80)
T ss_dssp             CEEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred             ChhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence            35677766554432211          125556677899999999994 433333333333

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03052 Hypothetical protein; Provisional

Probab=83.94  E-value=5.1  Score=24.78  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             CceEEcCCCeEEEEEEEEeeC---CCeeEEeeCCEEe
Q psy14060        244 SSAVINVGQLARFDAKISATK---PLDVYWLKVSSLS  277 (283)
Q Consensus       244 ~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~l  277 (283)
                      ....+..|..++|.|.+.-.+   .+.+-|.-||...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            456788999999999996322   2368899999988

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=83.65  E-value=1.3  Score=30.17  Aligned_cols=36  Identities=11%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ..++.++.  ....|.|..+++.|+|.|.-++++..|.
T Consensus        61 n~r~~F~~--enlaLlIkaAq~qDSG~Y~LEvT~~sG~   96 (108)
T PF11465_consen   61 NNRFNFTS--ENLALLIKAAQPQDSGLYCLEVTNESGK   96 (108)
T ss_dssp             HHHEEEET--TTTEEEESS-SGGG-EEEEEEEEETTSC
T ss_pred             cceEeeec--cCceEEEeecCcccCceEEEEEEcCCCc
Confidence            34555554  4568999999999999999999998773

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=82.82  E-value=1.6  Score=29.41  Aligned_cols=22  Identities=9%  Similarity=0.228  Sum_probs=18.4

Q ss_pred             CeEEEEEEE-EeeCCCeeEEeeC
Q psy14060        252 QLARFDAKI-SATKPLDVYWLKV  273 (283)
Q Consensus       252 ~~v~L~C~~-~g~p~~~v~W~~~  273 (283)
                      ....+.|.+ .|.|.+.|+|+++
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC
Confidence            456789998 5789999999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=82.24  E-value=6  Score=26.07  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             CCCeEEecCCceEE--cCC--CeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        235 VPPSFLTTISSAVI--NVG--QLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       235 ~~p~~~~~~~~~~v--~~g--~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      .++.++.+.....+  ..+  ....|.+.+.+. ...+.||.||+.+
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~   54 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL   54 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence            35566655544333  222  255666667665 4589999999998

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=81.96  E-value=2.6  Score=30.09  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=15.0

Q ss_pred             EEEEEccCCCCCCeEEEEEEEecce
Q psy14060         97 QERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        97 ~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+|.+.....- .|+|+|.+.....
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~  109 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSR  109 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTE
T ss_pred             EEEEEcchhcc-ccceEEEEEecCC
Confidence            34777764333 8999999877655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03042 CD47-like protein; Provisional

Probab=81.48  E-value=6.8  Score=31.66  Aligned_cols=56  Identities=5%  Similarity=-0.080  Sum_probs=33.7

Q ss_pred             cEEEEEEEccCc-----cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         65 SQQVQKEKKGDK-----EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        65 ~v~l~C~~~g~~-----~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ++.+.|.+...-     ++. +|.-.++........+..+|.+.. ...=.|+|+|++.+...
T Consensus        33 TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n   94 (286)
T PHA03042         33 TIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFN   94 (286)
T ss_pred             eEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeeccc
Confidence            699999997532     333 555444433333222456666654 33458999999877643

>KOG1480|consensus

Probab=80.62  E-value=0.29  Score=44.90  Aligned_cols=134  Identities=13%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCE----EEEEeCCEecCC---C--CCeEEEEeCCEEEEEEcCCCCCCCE-
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT----IKWFREDFPITS---S--PDFQIHTFSTKSILIMRQVFMEDSG-  202 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~----~~W~k~~~~~~~---~--~~~~~~~~~~~~~l~i~~~~~~d~G-  202 (283)
                      -|.|+..+.+..+..+.++.+.|.+...+...    -.|..+......   .  .....    ....+.|....-++.| 
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~----~~~si~Isr~~v~~~~~   99 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV----REVSIDISRQQVETSGG   99 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE----EeeeeeeehhhhhcccC
Confidence            45677778888899999999999987544432    245554332211   0  00000    0112333332222222 


Q ss_pred             --EEE--EEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEE
Q psy14060        203 --VFA--VIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSL  276 (283)
Q Consensus       203 --~Y~--C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~  276 (283)
                        -|.  |.+....|...+. +.+.+..         ....|...+....|..+..+.|.|.. .+.|...++|++++..
T Consensus       100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay---------~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~  170 (909)
T KOG1480|consen  100 PEDYWCQCVAWSDDGTVKSRKATVRIAY---------LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV  170 (909)
T ss_pred             ccceeeeeeeecCCCcchhhhHHHHHHH---------HHHhhccChhhheecccccccccccCcccchhhhhhccccCCC
Confidence              354  5566655622111 1111111         12345556667788889999999876 4667778999999987


Q ss_pred             ecC
Q psy14060        277 SDV  279 (283)
Q Consensus       277 l~~  279 (283)
                      ++.
T Consensus       171 ~~p  173 (909)
T KOG1480|consen  171 IDP  173 (909)
T ss_pred             CCc
Confidence            765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		2e-11
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		2e-11
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		4e-11
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		8e-11
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		8e-11
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		6e-09
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-08
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-08
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-08
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-08
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		3e-05
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		4e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		4e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		5e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		6e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		6e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		6e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		7e-04

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
           L +++E+KP   P FTK I      E   ARF+ + +G P P + WF++D P+  S  FQ
Sbjct: 30  LEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           I +       L + +V  +D   +   A N  G+A C+A L+VE
Sbjct: 90  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
           L +++E+KP   P FTK I      E   ARF+ + +G P P + WF++D P+  S  FQ
Sbjct: 30  LEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           I +       L + +V  +D   +   A N  G+A C+A L+VE
Sbjct: 90  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           +PP F + ++   A   +    + + DG P   I W++E   + S+P +++   +  + L
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
           ++ +V   D G +   AEN  G    SA LV++E++       +PPSF   +      +G
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK-------LPPSFARKLKDVHETLG 116
Query: 252 QLARFDAKISATKPLDVYWLK 272
               F+ +I+ ++PL V W K
Sbjct: 117 FPVAFECRINGSEPLQVSWYK 137

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 189
           + P FT+ +Q     E   A FE    G P+P + WFR+   I++S  P  QI     ++
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
            L +  V   +SG +++ A N  G+A  +A L+V+ +         PP+F+  + S  + 
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVR 116
Query: 250 VGQLARFDAKISA 262
            G   R   +++ 
Sbjct: 117 QGSQVRLQVRVTG 129

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           PP F +++Q     +  Q R +V   G P P +K++R+   I SS DFQI        L+
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           + + + EDSG ++V A N  G+A  +A L+V+
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 107 DDDGYY-AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI 165
           DD G Y  +   K   +S  +E     PP F        A+E     FE    G P+PT+
Sbjct: 285 DDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV 344
Query: 166 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            W +    +  S  FQI   S   IL    V   D G +  +AEN  G A+ SA L+V
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRIL---GVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           +PP F KK++P R  +QD+  R+E +  G P   + W++++  I  S  F++    + ++
Sbjct: 97  EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           L M  + +EDSG +   A N  G A  S +L V+E          PP F           
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLK 206
Query: 251 GQLARFDAKISATKPLDVYWLK 272
           G     + ++  T P  V W K
Sbjct: 207 GADVHLECELQGTPPFQVSWHK 228

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           PP F KK++P R  +QD+  R+E +  G P   + W++++  I  S  F++    + ++L
Sbjct: 98  PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
            M  + +EDSG +   A N  G A  S +L V+E          PP F           G
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG 207
Query: 252 QLARFDAKISATKPLDVYWLK 272
                + ++  T P  V W K
Sbjct: 208 ADVHLECELQGTPPFQVSWHK 228

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 205
           +E + ARF  + DG+P+PT+ W R+   +++S   Q+ T   KS   +  V   D G ++
Sbjct: 27  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86
Query: 206 VIAENRGGKAKCSANLVVE 224
           V+ EN  GK +    L ++
Sbjct: 87  VVVENSEGKQEAEFTLTIQ 105

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 205
           +E + ARF  + DG+P+PT+ W R+   +++S   Q+ T   KS   +  V   D G ++
Sbjct: 21  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 80
Query: 206 VIAENRGGKAKCSANLVVE 224
           V+ EN  GK +    L ++
Sbjct: 81  VVVENSEGKQEAEFTLTIQ 99

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTK 188
           A  P F  K++  + FE     F     G+P P I WF++   I+   D           
Sbjct: 5   ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
             L      ++D G + ++A N  G+  C+  L+V+   Q GR
Sbjct: 65  CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211
           R+     G P P ++W R+  P+ S    ++    +   L   ++ +EDSG++  +AEN+
Sbjct: 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENK 368
Query: 212 GGKAKCSANLVVE 224
            G    SA L V+
Sbjct: 369 HGTVYASAELTVQ 381

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
           + A+   +  G PLP IKW+R    +  S  +++ +      L +     ED GV+  IA
Sbjct: 23  EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82
Query: 209 ENRGGKAKCSANLVVE 224
            N  G+ + S+ L+++
Sbjct: 83  TNEVGEVETSSKLLLQ 98

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211
           R+     G P PT++W R   P+ S    ++        L   ++ +EDSG++  +AEN+
Sbjct: 312 RWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLEDSGMYQCVAENK 367
Query: 212 GGKAKCSANLVVE 224
            G    SA L V+
Sbjct: 368 HGTIYASAELAVQ 380

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSIL 191
           P F  K++  + FE     F     G+P P I WF++   I+   D             L
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
                 ++D G + ++A N  G+  C+  L+V+    G
Sbjct: 69  HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STK 188
           A  P F ++++      Q  A    +  G P P +KW+R+   I +    ++I  F    
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
             LI+  V  +D+ V+ V A N+GG    +A+L VE
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STK 188
           A  P F ++++      Q  A    +  G P P +KW+R+   I +    ++I  F    
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
             LI+  V  +D+ V+ V A N+GG    +A+L VE
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
           ++ R   ++ G P P IKW++   P+ S+     HT     +L + +V   D+G + VI 
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 270
Query: 209 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 237
            N   K K S   +LVV    Q G   ++ P
Sbjct: 271 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 301

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
           ++ R   ++ G P P IKW++   P+ S+     HT     +L + +V   D+G + VI 
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 209 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 237
            N   K K S   +LVV    Q G   ++ P
Sbjct: 401 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 431

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-31
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-26
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-30
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-20
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-30
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-22
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-30
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-29
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-27
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-27
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-27
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-19
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-27
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-26
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-26
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-25
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-04
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-25
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-25
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-24
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-24
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-24
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-23
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-23
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-23
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-23
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-23
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	7e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-23
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-15
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-20
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-17
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-21
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-21
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	9e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-17
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-17
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-16
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-20
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-20
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-20
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-15
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-12
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-19
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-19
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-18
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-18
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-18
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-14
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-16
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-14
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-17
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-17
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-15
2ens_A	96	Advanced glycosylation END product-specific recept	5e-15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-14
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-13
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-13
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	7e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-07
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	6e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-06
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-05
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-04

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  114 bits (286), Expect = 3e-31
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 189
           + P FT+ +Q     E   A FE    G P+P + WFR+   I++S  P  QI     ++
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
            L +  V   +SG +++ A N  G+A  +A L+V+ +         PP+F+  + S  + 
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET-------APPNFVQRLQSMTVR 116

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
            G   R   +++      V + +
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYR 139

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  100 bits (251), Expect = 4e-26
 Identities = 32/97 (32%), Positives = 52/97 (53%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
           +    PP F +++Q     +  Q R +V   G P P +K++R+   I SS DFQI     
Sbjct: 98  KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
              L++ + + EDSG ++V A N  G+A  +A L+V+
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  112 bits (281), Expect = 2e-30
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            + P   K+++       + A+   +  G PLP IKW+R    +  S  +++ +      
Sbjct: 5   GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF---LTTISSAV 247
           L +     ED GV+  IA N  G+ + S+ L+++            P F           
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------TPQFHPGYPLKEKYY 114

Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
             VG   R            + W  
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTWFH 139

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 5/152 (3%)

Query: 80  RKITATETTEMEHKGKIQERVVDASELDDDGYYAITER----KYYALSDLSEQKPAKPPV 135
           +++  +   +M   G+     V   E +D+G Y         +    S L  Q   +   
Sbjct: 46  KELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHP 105

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 195
                +          R  V + G P+P + WF     + +S +  I      + L+M+ 
Sbjct: 106 GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKN 165

Query: 196 VFME-DSGVFAVIAENRGGKAKCSANLVVEEK 226
           V  +  +G + V   N  G      ++ +++K
Sbjct: 166 VQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  114 bits (287), Expect = 2e-30
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           PP F KK++P R  +QD+  R+E +  G P   + W++++  I  S  F++    + ++L
Sbjct: 98  PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
            M  + +EDSG +   A N  G A  S +L V+E          PP F           G
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG 207

Query: 252 QLARFDAKISATKPLDVYWLK 272
                + ++  T P  V W K
Sbjct: 208 ADVHLECELQGTPPFQVSWHK 228

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  112 bits (282), Expect = 1e-29
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           PP F  K         +   F+    G     I W +++  I    ++++      + L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVG 251
           + +V   D+G +   A N  GK  CSA L V+E          PP F+  +  S ++   
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQD 114

Query: 252 QLARFDAKISATKPLDVYWLK 272
           +  R++ KI  +  + V W K
Sbjct: 115 EHTRYECKIGGSPEIKVLWYK 135

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 92.5 bits (230), Expect = 3e-22
 Identities = 21/92 (22%), Positives = 38/92 (41%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           PPVF KK  P    +      E E  G P   + W ++   + S   ++I + +  + + 
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           +  V   D G +   A N  G   C  ++ ++
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
           G + PP F     S  + +G+   F   ++ T P+ + W K
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK 41

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  110 bits (277), Expect = 7e-30
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFST-K 188
           A  P F ++++      Q  A    +  G P P +KW+R+   I      ++I  F    
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
             LI+  V  +D+ V+ V A N+GG    +A+L VE   +     +  P  L  + +   
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116

Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
             G++       S      + W K
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK 140

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.4 bits (235), Expect = 1e-23
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF- 185
                  P   + +    A   +    ++ F G P P I W +    I ++  +Q+    
Sbjct: 98  VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157

Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           S  S++    V  +D+G + V A+NR G  + +  L V +
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  105 bits (263), Expect = 7e-29
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-K 188
             + P   ++IQ     +   A F V   G P P  +W++    I  S     +      
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
             L++R V  EDS    V A N  G+    A L+V+ K
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  104 bits (262), Expect = 1e-28
 Identities = 27/97 (27%), Positives = 47/97 (48%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
           K         K +    +E + ARF  + DG+P+PT+ W R+   +++S   Q+ T   K
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           S   +  V   D G ++V+ EN  GK +    L +++
Sbjct: 70  STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  110 bits (277), Expect = 1e-27
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 10/140 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           PPVF KK  P    +      E E  G P   + W ++   + S   ++I + +  + + 
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
           +  V   D G +   A N  G   C  ++ ++           PP F+  +S     VG+
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKA----------PPRFVKKLSDISTVVGE 493

Query: 253 LARFDAKISATKPLDVYWLK 272
             +  A I   +P+ V W K
Sbjct: 494 EVQLQATIEGAEPISVAWFK 513

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  108 bits (272), Expect = 7e-27
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           +PP F + ++   A   +    + + DG P   I W++E   + S+P +++   +  + L
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
           ++ +V   D G +   AEN  G    SA LV++E++       +PPSF   +      +G
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK-------LPPSFARKLKDVHETLG 116

Query: 252 QLARFDAKISATKPLDVYWLK 272
               F+ +I+ ++PL V W K
Sbjct: 117 FPVAFECRINGSEPLQVSWYK 137

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  102 bits (255), Expect = 1e-24
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 133 PPVFTKKIQPCR-AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           PP F KK++P R   + +  R+E +  G P   + W++++  I  S  F++    + ++L
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
            M  + +EDSG +   A N  G A  S +L V+           PP F           G
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----------EPPVFRKKPHPVETLKG 399

Query: 252 QLARFDAKISATKPLDVYWLK 272
                + ++  T P  V W K
Sbjct: 400 ADVHLECELQGTPPFQVSWHK 420

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  101 bits (253), Expect = 2e-24
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
           L  ++   PP F +K++           FE   +G     + W+++   +    + Q   
Sbjct: 93  LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSF 152

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
               + L + Q      G +   A N  G A  SA L + E         VPP F     
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE-------VPPFFDLKPV 205

Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
           S  + +G+   F   ++ T P+ + W K
Sbjct: 206 SVDLALGESGTFKCHVTGTAPIKITWAK 233

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 99.9 bits (249), Expect = 8e-24
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
            +   PP F  K         +   F+    G     I W +++  I    ++++     
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SA 246
            + L + +V   D+G +   A N  GK  CSA L V+E          PP F+  +  S 
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSR 301

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
           ++   +  R++ KI  +  + V W K
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYK 327

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 82.5 bits (204), Expect = 5e-18
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSIL 191
           PP F KK+        ++ + +   +G    ++ WF++   I   S +  I      + L
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATL 536

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
              +    ++G +    +N  G  +C A L V E
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  104 bits (260), Expect = 3e-27
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKS 189
            PP FT+            A F  +  GDP P I W ++   +++     I     S   
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
           + I       D  ++  +A N  G+   S  L V  + Q  RG    P+        V+ 
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG---FPTIDMGPQLKVVE 121

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
             + A      S     ++ W K
Sbjct: 122 RTRTATMLCAASGNPDPEITWFK 144

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.1 bits (208), Expect = 1e-19
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIH 183
           +Q P   P      Q         A       G+P P I WF++  P+ +S +    +  
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL 161

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQ 228
              +   L + Q    D G +  +A N  G      ANL V   + 
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  100 bits (250), Expect = 6e-27
 Identities = 20/95 (21%), Positives = 32/95 (33%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
             P  T +++  R       RF +     P   +KW+     +  S        S    L
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            +     +DSG +  +  N  G+A   A L V   
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =   99 bits (249), Expect = 3e-26
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)

Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
           L +++E+KP   P FTK I      E   ARF+ + +G P P + WF++D P+  S  FQ
Sbjct: 30  LEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89

Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
           I +       L + +V  +D   +   A N  G+A C+A L+VE   + G G
Sbjct: 90  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG 141

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 97.7 bits (244), Expect = 4e-26
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           +  PV    +Q         A+F V+  G+P PT  W ++   IT    +++        
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           L + +    DSG++    +N  G    S  L ++
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 97.0 bits (242), Expect = 1e-25
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P   +  +  +    +      +  G    T  W +    I  S   ++      S L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
           +     E  G + ++ EN+ G  +   NL V +K         PP+ 
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-------PPAG 106

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 230 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
           G  G   P  +       +  G+      K++ T+P+   W+K
Sbjct: 1   GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK 43

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 97.0 bits (242), Expect = 1e-25
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
             +  P F  K++  + FE     F     G+P P I WF++   I+   D         
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 189 SI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS 238
               L      ++D G + ++A N  G+  C+  L+V+    G      P S
Sbjct: 64  GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG------PSS 109

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 95.1 bits (237), Expect = 4e-25
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STK 188
              PP F +  +     E    R + +  G P P + W+     + S    ++       
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
             LI   V   D+G +A +A+NR G+A  +  L V  K
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
           G + PP F+    +  I+ G+  R D K+S    P DV W  
Sbjct: 1   GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYL 41

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  100 bits (250), Expect = 6e-25
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTF-STK 188
           A  P F ++++      Q  A    +  G P P +KW+R+   I      ++I  F    
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
             LI+  V  +D+ V+ V A N+GG    +A+L VE   +     +  P  L  + +   
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116

Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
             G++       S      + W K
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK 140

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 72  KKGDKEIV---RKITATETTEMEHKGKIQERVVDASELDDDGYY---AITER-KYYALSD 124
            +  KEI+    K    E     H+  I          DD   Y   A  +       + 
Sbjct: 39  YRQGKEIIADGLKYRIQEFKGGYHQLIIAS-----VTDDDATVYQVRATNQGGSVSGTAS 93

Query: 125 LSEQKPAK--PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
           L  + PAK   P   + +    A   +    ++ F G P P I W +    I ++  +Q+
Sbjct: 94  LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV 153

Query: 183 H-TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
             T S  S++    V  +D+G + V A+NR G  + +  L V + 
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKS 189
           +PP F K+ +         A F  +  GDP P + W ++   + S     I     +   
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
           + I       D  V+  +A+N  G+    A L V  + Q   G    P+        V+ 
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVVE 121

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
             + A      S     ++ W K
Sbjct: 122 RTRTATMLCAASGNPDPEITWFK 144

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 92.2 bits (229), Expect = 5e-22
 Identities = 31/147 (21%), Positives = 45/147 (30%), Gaps = 8/147 (5%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
           +Q P+  P      Q         A       G+P P I WF++  P+  S         
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
               L +      D G +  +A N  G +    ANL V  +        V P F     S
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-------VAPRFSILPMS 214

Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
             I  G           +    V W++
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQ 241

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 183
           +L  +     P F+                     G P+P +KW +    +T   D  + 
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG 255

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
                   ++    ++DS  +  +A +  G  +  A + V+  
Sbjct: 256 R------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HT 184
           S       P F +        E    R + +  G P P + W  +  P+      ++   
Sbjct: 2   SSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
            +    LI+  V   D+G++  IA NR G+   S  LVV  K  G
Sbjct: 62  ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 92.3 bits (230), Expect = 4e-24
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-KSI 190
            PP F   +      E       +   G+P P + W R   P+                 
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L +      D+G +   A N  G  +C A L V  +
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 90.8 bits (226), Expect = 1e-23
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
                  K +     F  + A FE+E   +P    +W  +  P+ +SPD +I     K I
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           LI+    +  +G  +  A N     K +ANL V+E
Sbjct: 62  LILHNCQLGMTGEVSFQAAN----TKSAANLKVKE 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 91.2 bits (227), Expect = 1e-23
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
               +    FT+++   +  E+  A F  +    P  T+ W +    + +S   Q     
Sbjct: 2   SSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEG 60

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
               L +  +   DS  +        G+A+  A L+V+ +R G
Sbjct: 61  LTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSG 99

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 89.7 bits (223), Expect = 4e-23
 Identities = 18/92 (19%), Positives = 35/92 (38%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P      +  +         EV+F G P PT  W   D     +P+  +   S+ + + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                  DSG + +  +N  G+ +    ++V+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 89.3 bits (222), Expect = 7e-23
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P F+  ++ C   E      +    G P+P I W     PI  +        +    L 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE---LH 67

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           ++    ED G +  +AEN  G+  CSA + V
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 89.3 bits (222), Expect = 7e-23
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILI 192
            + + +I      E    ++  + +     T + W+     + +S  ++I      +IL 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
           ++ +   D G +     N  G+    A L V+  R+
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 89.8 bits (223), Expect = 8e-23
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
             +  + P+F  K Q  +  E D  + E +    P P + W R +  +  + D       
Sbjct: 9   SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68

Query: 187 T--KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
              +  L+++ V  +D+G + V A N  G   C+  L V  +
Sbjct: 69  NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 88.5 bits (220), Expect = 1e-22
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           + P  F + ++     E   A           P +KW   +  +     + +        
Sbjct: 6   SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L++R +  +DSG ++       G    SA L V   
Sbjct: 65  LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 16/147 (10%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK-- 188
             PPV  +  Q            +    G+P P I W  +   I ++  +Q+  + T   
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486

Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
              S L +  V   D G++  IA+++ G A+ SA L V               ++  +  
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-----------LPYIRQMEK 535

Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
             I  G+       ++      + W +
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWER 562

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 91.5 bits (227), Expect = 5e-21
 Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 15/179 (8%)

Query: 99  RVVDASELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEV 155
            + +     D   Y   A  +  Y A   L  Q    P +     +   A          
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641

Query: 156 EFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTK-SILIMRQVFMEDSGVFAVIAENRGG 213
              G  LP  I W  +   I+            + S+L +  V    +G F   A N  G
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701

Query: 214 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
             + +  L V           VPP ++   +      G  A+ + K        V W K
Sbjct: 702 HQQFTTPLNVY----------VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK 750

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 88.5 bits (219), Expect = 7e-20
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P                 A F  ++ G+P+ T+ W ++   I  S          +S+L 
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLR 392

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
           +  V  ED G++     N    A+ SA L +  +         PP          +  G 
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGR-------FDPPVIRQAFQEETMEPGP 445

Query: 253 LARFDAKISATKPLDVYWLK 272
                         ++ W  
Sbjct: 446 SVFLKCVAGGNPTPEISWEL 465

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 87.3 bits (216), Expect = 1e-19
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--I 190
             V   K                   G P+P  +W++     T      ++    +    
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           LI++   +EDSG +  +  N  G       L V            P S      +  ++ 
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDF 357

Query: 251 GQLARFDAKISATKPLDVYWLK 272
           G+ A F  + +      V W+K
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMK 379

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.0 bits (197), Expect = 4e-17
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P   + ++       +         G P+ +I W R++  +  +   ++  F   +++I
Sbjct: 527 LPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV--FPNGTLII 583

Query: 193 MRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINV 250
                  D   +  +A+N+ G  A+ S  + V           V P  +          V
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVM----------VLPRIIPFAFEEGPAQV 633

Query: 251 GQLARFDAKISAT-KPLDVYWLK 272
           GQ       +     PL++ W  
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTL 656

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
           PP +  +       +   A+ E + DG P P + W +         +++    S      
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT--PGEYKDLKKSDNIRVE 771

Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
              L +  +   + G +   A N  G    +  ++  +              
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ---------AHHHH 814

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 18/150 (12%)

Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           K PVF K+      F     A  E +  G+P+P I W R D              S   +
Sbjct: 37  KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 96

Query: 191 LIMR-----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
           +              + V+A +A N+ G        V           VV   +   ++ 
Sbjct: 97  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADVNK 147

Query: 246 AVINVGQLARFDAKISATK---PLDVYWLK 272
             +  G  A     I +        V W  
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHT 177

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 64.6 bits (157), Expect = 6e-12
 Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 10/221 (4%)

Query: 73  KGDKEIVRKITATETTEMEHKGKIQE-RVVDASELDDDGYYAITERKYY--ALSDLSEQK 129
           + D   V  +        + K      R  D  +      YA   R  +   +S     +
Sbjct: 75  RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 134

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPITSSPDFQI--HT 184
                 +   +        + A  +     F  D +  + W  ++             + 
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194

Query: 185 FSTKSILIMRQVFMEDS-GVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTT 242
                 L +R+V  ED    +    ++R  G+ + SA        +     V     L  
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254

Query: 243 ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV 283
                 +                    W K    +  K+ V
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAV 295

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-IN 249
           + M    ++   +FA +A    G    +AN    +++         P FL   ++ +  +
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK--------GPVFLKEPTNRIDFS 52

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
               A  + K S     ++ W++
Sbjct: 53  NSTGAEIECKASGNPMPEIIWIR 75

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P  T  ++       +         G+P P I WF+++  +       +        L 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLT 67

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
           +R+V  ED G++   A +  G AK  A  ++E  ++
Sbjct: 68  IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 90.7 bits (225), Expect = 4e-22
 Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 23/170 (13%)

Query: 80  RKITATETTEMEHKGKIQERVVDASELDDDGYYAIT----------------------ER 117
             I  ++  +    G+     ++    +D G Y +                         
Sbjct: 42  SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYA 101

Query: 118 KYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS 177
           ++  L   +  +  +  V           E           GDP P + W + +  +  +
Sbjct: 102 EFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT 161

Query: 178 PDFQIHTFSTK-SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
               +   + + +   +  V   DSG + ++ +N+ G       + V   
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 15/125 (12%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
                 + W      I  S   +      +  L + +    D G + +   +     + +
Sbjct: 29  YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88

Query: 219 ANLVVEE-----------KRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD 267
            +L  +            K+                    I  G+       +    P +
Sbjct: 89  VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 148

Query: 268 VYWLK 272
           V WLK
Sbjct: 149 VSWLK 153

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 91.9 bits (228), Expect = 7e-22
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST 187
            P   P F + +       +     + +         I W++++  I  S D +      
Sbjct: 3   DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDG 59

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
              L++ +   +D+G++ VI ++  GK K    LV E  ++     V     L+     +
Sbjct: 60  ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMM-EVCKKIALSATDLKI 118

Query: 248 INVGQLARFDAKISATKP-LDVYWLK 272
            +  +  +  + ++     L V W  
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSH 144

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 84.6 bits (209), Expect = 4e-19
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
           L   +  +  +  V           E           GDP P + W + +  + S     
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270

Query: 182 IHTFSTK-SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           +   + + +   +  V   DSG + ++ +N+ G       + V  
Sbjct: 271 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 84.2 bits (208), Expect = 5e-19
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 21/161 (13%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL----------PTIKWFREDFPITSSPDFQI 182
                 ++    A      + +   +G  L            + W      I  S   + 
Sbjct: 98  FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT 157

Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-----------KRQGGR 231
                +  L + +    D G + +   +     + + +L  +            K+    
Sbjct: 158 GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 217

Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
                           I  G+       +    P +V WLK
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 93.0 bits (231), Expect = 8e-22
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
           LS+    +   F ++     A E   A  E    G P P+  W R +  I        ++
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK--KYS 270

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
               S L++  V  +DSG +  +   +      SA L V           VPP FL   S
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL----------VPPWFLNHPS 320

Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
           +          F+  +S      V W+K
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMK 348

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 85.7 bits (212), Expect = 3e-19
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           A P  F  + +   AF  D    + E  GDP+PTI W +    +   P            
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178

Query: 191 LIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
           L + ++   DSGV+   A N    +    A + +       R       FL   S+ +  
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR----QLYFLQRPSNVIAI 234

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
            G+ A  +  +S   P    WL+
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLR 257

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           PP F        A+E     FE    G P+PT+ W +    +  S  FQI   S    L 
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LR 368

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           +  V   D G +  +AEN  G A+ SA L+V +
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 13/145 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
              F  +                  + D  +P IKW ++   +    D +       S+L
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80

Query: 192 IMR----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
           I      +    D G++   A      +  S    V            P  FL+   S  
Sbjct: 81  IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA--------GPLRFLSQTESIT 132

Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
             +G       ++       ++W K
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTIHWQK 157

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 92.0 bits (228), Expect = 8e-22
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 29/220 (13%)

Query: 80  RKITATETTEMEHKGKIQERVVDASELDDDGYY--------------AITERKYYALSDL 125
                +   E+E KG   +       +DD G Y               I E +   L  L
Sbjct: 41  VSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLAL 100

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHT 184
           S  +   P V  K        E+ Q RF ++         + +   +  I   P +++H 
Sbjct: 101 SH-EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI 159

Query: 185 FSTKSI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV-------- 234
                I  + M ++  ED G +    ++       +  LV +  ++  +           
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219

Query: 235 -VPPSFLTTISSAVINVGQLARFDAKISATKP-LDVYWLK 272
              P F+  +S  V           K++  K    + W K
Sbjct: 220 KQGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYK 258

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 88.5 bits (219), Expect = 2e-20
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
              P   + +            FE +    P     W ++      SP  ++ +   K+ 
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGG--VVPPSFLTTISSAVI 248
           +  + + M+D G+++    +  G A        E KR          P   + +  +  I
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 249 NVGQLARFDAKISATKPL-DVYWLK 272
                 RF  +         V ++ 
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIF 144

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 80  RKITATETTEM--EHKGKIQERVVDASELDDDGYY--------------------AITER 117
           ++I      +M  +    I E  ++  + +D+G Y                       + 
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206

Query: 118 KYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITS 176
           +  A     E    + P F + +       +     + +       T I W++++  I+ 
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265

Query: 177 SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                         L++ +   +D+G++ VI ++  GK K    LV E
Sbjct: 266 DEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.0 bits (223), Expect = 1e-21
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 129 KPAKPPVFTK--KIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IH 183
              + P +T   K++         +  +F     G+P+PT++W +               
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
             +    LIM  V   D G +  + EN  G    + +L V E     R    P       
Sbjct: 71  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE-----RSRHRPILQAGLP 125

Query: 244 SSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
           ++A   VG    F  K+ +     + W+K    +  K G
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 71.9 bits (176), Expect = 4e-15
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE-----------DF 172
           D+ E+   +P +                 F  +   D  P I+W +              
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168

Query: 173 PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
           P            S   +L +  V   D+G +     N  G+A  SA L V  K+Q
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           + P    K ++       +      E      P + W ++   I  S  + +    T ++
Sbjct: 6   SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L++R   ++D+G +    E     +K +A+L VEEK
Sbjct: 65  LVIRGASLKDAGEYTCEVEA----SKSTASLHVEEK 96

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 89.2 bits (221), Expect = 2e-21
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 16/151 (10%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQ-------ARFEVEFDGDPLPTIKWFREDFPITSSPDFQ- 181
               P +T+   P R  ++          RF     G+P P+I W +             
Sbjct: 8   DTGAPYWTR---PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64

Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
           I     +  L+M  V   D G +  + EN+ G  + +  L V E     R    P     
Sbjct: 65  IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAG 119

Query: 242 TISSAVINVGQLARFDAKISATKPLDVYWLK 272
             ++    +G    F  K+ +     + WLK
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 18/138 (13%)

Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP---------- 173
           D+ E+ P +P +         A       F  +   D  P I+W +              
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164

Query: 174 --ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
             +T    +   +      L +  V   D G +   A N  G A+ +  L V   R    
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR---- 220

Query: 232 GGVVPPSFLTTISSAVIN 249
                   +    +  ++
Sbjct: 221 --AAEEELVEADEAGSVH 236

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 87.5 bits (217), Expect = 6e-21
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 7/146 (4%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           A PP   +K Q         A F     GDP P+I W +    ++ +            I
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63

Query: 191 LIMR---QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
            I+R        D   +  +AEN  G A    A L + E  +   G    P       + 
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG---FPVITQGPGTR 120

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
           VI VG       K       ++YW+K
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIK 146

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 13/141 (9%)

Query: 99  RVVDASELDDDGYY---------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQD 149
           R+       DD  Y                       ++ PA  PV T+           
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126

Query: 150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 209
                 +  G+P P I W +    +  S             L +     ED G +  +AE
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGFLQIENSREEDQGKYECVAE 183

Query: 210 NRGGKAKCSA-NLVVEEKRQG 229
           N  G     A NL V+ +R G
Sbjct: 184 NSMGTEHSKATNLYVKVRRVG 204

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
              F+KK +         A FE E +      ++W R    I++S  + + T  T+  L 
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLT 66

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           +R+V   D G +AVIA    G +K   +L V E
Sbjct: 67  VREVGPADQGSYAVIA----GSSKVKFDLKVIE 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 84.0 bits (208), Expect = 7e-21
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
           +     TK+++     E +   FE             W      + SS  FQ      K 
Sbjct: 6   SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           IL++R+    D+G                A+L+V E+
Sbjct: 66  ILVVREAAPSDAGEVVFSVRG----LTSKASLIVRER 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 83.6 bits (207), Expect = 9e-21
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 131 AKPPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
           +    F K + P  +  +  + RF VE   DP   +KW++    I  S  +       + 
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           IL +    M D   + V A    G  KCS  L V   
Sbjct: 64  ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 88.3 bits (219), Expect = 1e-20
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 13/143 (9%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
              F + + P    + + A         P P + W   +  +T+  D +    +  ++ I
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 157

Query: 193 MRQVFMEDSGVFAVIAEN-RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT--ISSAVIN 249
              +   D G++         G+      +V+           VPP+        +A   
Sbjct: 158 -LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN---------VPPAISMPQKSFNATAE 207

Query: 250 VGQLARFDAKISATKPLDVYWLK 272
            G+   F  + S +    + W +
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFR 230

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
               T  +        +   F     G+P     +  +   I S+    +     +S L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
           +    +ED+G++   A +  G+ +  +  L + +            +F   +S      G
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----------KLTFREVVSPQEFKQG 113

Query: 252 QLARFDAKISATKPLDVYWLK 272
           + A    ++S++    V WL 
Sbjct: 114 EDAEVVCRVSSSPAPAVSWLY 134

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 77.9 bits (192), Expect = 6e-17
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 17/139 (12%)

Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFT--KKIQPCRAFEQDQARFEVEFDGD 160
             D+G Y      E +              PP  +  +K     A   ++  F     G 
Sbjct: 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 221

Query: 161 PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
           P P I WFR    I  +  + +    + + L +R +   D G +   A N+ G+ +  A 
Sbjct: 222 PEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279

Query: 221 LVVEEKRQGGRGGVVPPSF 239
           L V           V    
Sbjct: 280 LQV----------FVQHHH 288

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
           +K  K PV T  ++   A  ++ A F    +  P P I W R    I      +      
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIREN 60

Query: 188 KSILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
             +L +  V   D G++   A N  GG  +    L V+          + P       + 
Sbjct: 61  GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK----------MKPKITRPPINV 110

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
            I  G  A             V W+K
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIK 136

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
              P  T+     +  E  +A       G+P P++ W + D  +  +    +    +   
Sbjct: 98  KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS--- 154

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVE 224
           L +  V  ED+G +  +A+N  G A      L VE
Sbjct: 155 LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 82.8 bits (205), Expect = 2e-20
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF----QIHTFS 186
           + P +    ++  + F  D+    VE   +    + W +    +T    F    +     
Sbjct: 6   SGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
            + ILI   V  ED G + VI        +C A L+VEEK+
Sbjct: 65  KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 82.8 bits (205), Expect = 3e-20
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            +     + ++     E   A F           + WF +  P+ ++   +I        
Sbjct: 11  GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70

Query: 191 -LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            L +RQ+ ++DSG     A    G  + SA L V EK
Sbjct: 71  VLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
               ++ +V+ +             +  +    +  G  A F  +IS      V+W  
Sbjct: 1   GSSGSSGLVQGR---------RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL 49

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 85.4 bits (211), Expect = 4e-20
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 14/152 (9%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
             FTK        E+ Q RF ++         + +   +  I   P +++H      I  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE---------EKRQGGRGGVVPPSFLT 241
           + M ++  ED G +    ++       +  LV +         E ++        P F+ 
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 242 TISSAVINVGQLARFDAKISATKP-LDVYWLK 272
            +S  V           K++  K    + W K
Sbjct: 123 YLSWEVT-GECNVLLKCKVANIKKETHIVWYK 153

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHT 184
            E    + P F +         +     + +       T I W++++  I+         
Sbjct: 110 QEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                 L++ +   +D+G++ VI ++  GK K    LV E
Sbjct: 169 --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           + P  FT+ ++   A E   A  + E        ++W +    +     + +    T+  
Sbjct: 6   SGPARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGTRCE 63

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L +  + + D+G ++ +     G+ + SA L V   
Sbjct: 64  LQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 87.0 bits (215), Expect = 6e-20
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 133 PPVFTKKI----QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTFST 187
            P +T+      +       +  RF     G+P P+I W +             I     
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
           +  L+M  V   D G +  + EN+ G  + +  L V E     R    P       ++  
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAGLPANQT 233

Query: 248 INVGQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
             +G    F  K+ +     + WLK   ++  K G
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 67.7 bits (165), Expect = 3e-13
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 20/161 (12%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
           +    P     + +       D          G P+    W ++   +  S    +    
Sbjct: 3   RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-- 60

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV-----------EEKRQGGRGGVV 235
               L +     EDSG ++             +  V            E++ +       
Sbjct: 61  --QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118

Query: 236 PPSFL----TTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            P +            +      RF    +      + WLK
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE-------------DFP 173
           E+ P +P +         A       F  +   D  P I+W +               + 
Sbjct: 216 ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV 275

Query: 174 ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
                     T     +L +  V  ED+G +  +A N  G +  SA LVV   
Sbjct: 276 TVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 83.7 bits (207), Expect = 8e-20
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 11/142 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
              F + + P    + + A         P P + W   +  +T+  D +    +  ++ I
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI--SSAVINV 250
              +   D G++               +++V           VPP+        +A    
Sbjct: 62  -LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN--------VPPAISMPQKSFNATAER 112

Query: 251 GQLARFDAKISATKPLDVYWLK 272
           G+   F  + S +    + W +
Sbjct: 113 GEEMTFSCRASGSPEPAISWFR 134

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQP--CRAFEQDQARFEVEFDGD 160
             D+G Y      E +              PP  +   +     A   ++  F     G 
Sbjct: 66  KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 125

Query: 161 PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
           P P I WFR    I  +  + +    + + L +R +   D G +   A N+ G+ +  A 
Sbjct: 126 PEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183

Query: 221 LVVEEK 226
           L V  +
Sbjct: 184 LQVFVQ 189

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 86.9 bits (215), Expect = 1e-19
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 26/199 (13%)

Query: 90  MEHKGKIQERVVDASELDDDGYY-------AITERKYYALSDL-----SEQKPAKPPVFT 137
               G +   +V   ++ D   Y       A+ E       ++             PV  
Sbjct: 157 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216

Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQ 195
              +   A   D       +  +P+    +F+    +  +P+ +I  H  ++   L+ + 
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 196 VFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-INVGQL 253
              ED GV+    +N  GK  K S  L V             P +       + +  GQ 
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQGQD 326

Query: 254 ARFDAKISATKPLDVYWLK 272
                K++     +V W  
Sbjct: 327 VTIPCKVTGLPAPNVVWSH 345

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 133 PPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
            P + +K +      +        +  G P P + W     P+ S     +      S L
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTD----SGL 362

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           +++ V   D G +   A N  G       + V
Sbjct: 363 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 14/144 (9%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
           K PV   +       E +    E   +G+       W ++                  S+
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
           + +R     D G +   AE   G A     +                 +           
Sbjct: 65  VFLR-PQASDEGHYQCFAETPAGVASSRVISFRKT----------YLIASPAKTHEKTPI 113

Query: 250 VGQLARFDAKISATKP-LDVYWLK 272
            G+  + D  +    P   + W K
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKK 137

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 9/161 (5%)

Query: 121 ALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPD 179
           A S +   +         K       E    + +    +  P P I W +       + D
Sbjct: 88  ASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD 147

Query: 180 FQ-----IHTFSTKS--ILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGR 231
                  I      +    I+ +  + D   +   A+N     +       ++   +   
Sbjct: 148 VTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207

Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
           G    P         +   G +        +       + K
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 248

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 80.9 bits (200), Expect = 1e-19
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           A P  FT+ ++   A E   A    E        ++W++    +       +     +  
Sbjct: 17  ALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCE 74

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L +R +  ED+G +  +     GK + SA L V   
Sbjct: 75  LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)

Query: 210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY 269
           + G   + SA L V           +P  F   + +     G  A    ++S  K   V 
Sbjct: 2   SSGSSGRTSAMLTVRA---------LPIKFTEGLRNEEATEGATAVLRCELS--KMAPVE 50

Query: 270 WLK 272
           W K
Sbjct: 51  WWK 53

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
               +      + I        +QA F+ E   +   T KW++    +  S    I    
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVG 60

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
               L++  V  ED G +  + +        SA L   E +
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK 99

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 87.1 bits (215), Expect = 2e-19
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 17/208 (8%)

Query: 32  VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME 91
               + +  +   VS+   +A     + +   K           +         +T    
Sbjct: 554 TLQPDMQPTEQESVSL-WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKL 612

Query: 92  HKGKIQERVVDASEL-------DDDGYY------AITERKYYALSDLSEQKPAKPPVFTK 138
           +         D   +        D G Y        T++++  +  L+       P  T 
Sbjct: 613 NATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV-LERVAPTITG 671

Query: 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM 198
            ++       +         G+P P I WF+++  +       +        L +R+V  
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRK 729

Query: 199 EDSGVFAVIAENRGGKAKCSANLVVEEK 226
           ED G++   A +  G AK  A  ++E  
Sbjct: 730 EDEGLYTCQACSVLGCAKVEAFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.8 bits (196), Expect = 6e-17
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
                  +       A   ++ R   ++ G P P IKW++   P+ S+     HT     
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGH 381

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA--- 246
           +L + +V   D+G + VI  N   K K S  + +           VPP        +   
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY--------VPPQIGEKSLISPVD 433

Query: 247 VINVGQLARFDAKISAT-KPLDVYWLK 272
               G        + A   P  ++W  
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYW 460

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.8 bits (183), Expect = 3e-15
 Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 27/160 (16%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
            P  T +    +  EQ+        D      + W++           ++ T   K    
Sbjct: 550 GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608

Query: 189 ----------------SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
                            I+ ++   ++D G +  +A++R  K +      +    +    
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---- 664

Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
             V P+    + +   ++G+        S   P  + W K
Sbjct: 665 --VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK 702

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 17/156 (10%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI--KWFREDFPITS-------- 176
                   V             ++         +    I   W                 
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277

Query: 177 SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVP 236
                       S L +  V   D G++   A +     K S  + V EK          
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF-------V 330

Query: 237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
                  S     VG+  R  AK     P ++ W K
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK 366

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 19/190 (10%), Positives = 46/190 (24%), Gaps = 15/190 (7%)

Query: 100 VVDASELDDDGYY-------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
            +     +D G Y        +    Y  + D      A        +      +     
Sbjct: 89  TIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS-DQHGVVYITENKNKTVV 147

Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
                    L      R        PD    ++ +K    +    +  +G+    A+   
Sbjct: 148 IPCLGSISNLNVSLCARYP-EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206

Query: 213 GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
              +    +VV    +      +    L+      ++VG+    +        + + +  
Sbjct: 207 ESYQSIMYIVVVVGYR------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 260

Query: 273 VSSLSDVKRG 282
               S  +  
Sbjct: 261 EYPSSKHQHK 270

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.4 bits (143), Expect = 4e-10
 Identities = 12/152 (7%), Positives = 27/152 (17%), Gaps = 8/152 (5%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-TFSTKSI 190
             P  + +            +      G       W           +            
Sbjct: 30  DLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           L + +V   D+G +          +     +            +   S    +     N 
Sbjct: 88  LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPF-----IASVSDQHGVVYITENK 142

Query: 251 GQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
            +        S +        +      V  G
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 17/177 (9%), Positives = 36/177 (20%), Gaps = 48/177 (27%)

Query: 133 PPVFTKKI---QPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSP---------- 178
           PP   +K                        P P  I W+ +     ++           
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479

Query: 179 -----------------------DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215
                                   F +     K++  +       S ++   A N+ G+ 
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539

Query: 216 KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
           +   +  V             P              +          +   ++ W K
Sbjct: 540 ERVISFHVT----------RGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYK 585

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 80.6 bits (199), Expect = 2e-19
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
           S  S    +   V+        A   ++     E    P   ++W ++   +  SP   +
Sbjct: 3   SGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLL 61

Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
               T   L++  V +EDSG +             S  + V E 
Sbjct: 62  QKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 4/95 (4%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           +        +         +   + E   +     KW +   P+  S   ++        
Sbjct: 5   SSGLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHK 62

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           L++     ED G +    +         A + V  
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
           +    ++                        E    G P P I W+++   + S    + 
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KA 268

Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT 242
              +    L +  V  EDSG +  +A N+ G  + + ++ V+            P +L  
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK----------AAPYWLDE 318

Query: 243 ISSAVINVGQLARFDAKISATKPLDVYWLK 272
             + ++  G+  R   + +      V W+ 
Sbjct: 319 PKNLILAPGEDGRLVCRANGNPKPTVQWMV 348

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P +  + +       +  R     +G+P PT++W     P+ S+P       +  +I+ 
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF 371

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
            R   +    V+     N  G    +A + V +
Sbjct: 372 -RDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 133 PPVFTKK-IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           PP  TK+  +      +D    E E  G+P P+  W R       + D ++        L
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75

Query: 192 IMRQVFM----EDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLT-TISS 245
           ++         E  G +   A N+ G A      L V +           P +    +  
Sbjct: 76  VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK----------SPLWPKENLDP 125

Query: 246 AVINVGQLARFDAKISATKP-LDVYWLK 272
            V+  G             P   ++W+ 
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMS 153

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 7/145 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           P    + + P    E      +     G P P I W        +  D ++        L
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNGD-L 173

Query: 192 IMRQVFMEDS-GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL---TTISSAV 247
               V ++D    ++  A           N    +           PSF+    T SS +
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233

Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
           +  G     +   S     D+ W K
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYK 258

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 78.9 bits (195), Expect = 6e-19
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS--TK 188
           +   + TK+++   A+  ++   E E   +    +KWF+    I   P  +        K
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            ILI+      D+  ++V+        + SA L V+ K
Sbjct: 64  HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLK 97

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 84.0 bits (207), Expect = 7e-19
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 10/148 (6%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFE-------VEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
                 +  +     E +            +     P   + W + D   T   + +   
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
           ++    L +     EDSG +     N     K S  L V E        +  P  LT  +
Sbjct: 77  WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136

Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
           S V+                 + + W K
Sbjct: 137 SGVL---VCPDLSEFTRDKTDVKIQWYK 161

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.9 bits (160), Expect = 2e-12
 Identities = 13/132 (9%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
                         I+W+++   +    +  +    T  +L+   V +ED+G +  +   
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV-HDVALEDAGYYRCVLTF 201

Query: 211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK----PL 266
                + +    +E + +  +     P  ++ + +   ++G       K+          
Sbjct: 202 AHEGQQYNITRSIELRIK-KKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT 260

Query: 267 DVYWLKVSSLSD 278
            ++W    +  +
Sbjct: 261 MLWWTANDTHIE 272

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 17/112 (15%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFE---VEFDGDPLPTIKWFRED----------FP 173
           ++K    PV    ++   A    +           G PL T+ W+  +            
Sbjct: 220 KKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279

Query: 174 ITSSPDFQIHT---FSTKSILIMRQVFMEDSGV-FAVIAENRGGKAKCSANL 221
           +T  P  +         +  LI   V  ED  + F  +  N          +
Sbjct: 280 VTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 78.6 bits (194), Expect = 8e-19
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 132 KPPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKS 189
           K   F KK++P  +  +  + R  VE   D    +KW +    I  S   +   +   K 
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
            L + Q  + D   +  +     G  KCS  L V+E
Sbjct: 73  TLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 84.1 bits (208), Expect = 9e-19
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED-FPITSSPDF 180
           L +       +P +  +  +   A +    + E    G+P+PTI W R D  PI      
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253

Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL 240
                    IL +     ED+G +  +AEN  GK      L               P+++
Sbjct: 254 HKSN----GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPNWV 299

Query: 241 TTISSAVINVGQLARFDAKISATKPLDVYWLK 272
             I+   + + +   ++ K +        WLK
Sbjct: 300 QIINDIHVAMEESVFWECKANGRPKPTYRWLK 331

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 75.6 bits (186), Expect = 9e-16
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P + + I       ++   +E + +G P PT +W +   P+ +    QI     +  L 
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLN 350

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           +  V + D+G++  +AEN+ G    SA L V  +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 130 PAKPPVFTKK---IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
           P   PVF ++   +      E+ + +   E  G+P P I+W      +    DF+ ++  
Sbjct: 2   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YSVV 60

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISS 245
             S+LI      +D+G +  IA N  G      A L             +      T S+
Sbjct: 61  DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF---------AYLENFKTRTRST 111

Query: 246 AVINVGQLARFDAKISATKP-LDVYWLK 272
             +  GQ              L   W+ 
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIF 139

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.0 bits (148), Expect = 7e-11
 Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 4/143 (2%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
               T+                          +  W   ++P     D +         L
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNL 159

Query: 192 IMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
            + +V   D G +  +  N             +  +  G  G   P   +    +     
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219

Query: 251 GQLARFDAKISATKPLDVYWLKV 273
           G   + +          + W + 
Sbjct: 220 GTTVKLECFALGNPVPTILWRRA 242

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-------FQIHT 184
           +P +   +++    +E  Q     + +G+P+P I W R     T +          ++  
Sbjct: 1   QPHI--IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
               S L ++ V + DSG +   A +R G  + S  L +E            P F++  +
Sbjct: 59  QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY----------APKFISNQT 108

Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
                 G        + +  P  ++W +
Sbjct: 109 IYYSWEGNPINISCDVKSNPPASIHWRR 136

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 76.0 bits (187), Expect = 7e-16
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--KSI 190
            P F        ++E +      +   +P  +I W R+   + +     + T+ST  K I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L +      D G +   A N  G       L + + 
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 77.5 bits (191), Expect = 3e-18
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
           PP      +P    E      E    G+P PT+ W     P+  S    +  +    I  
Sbjct: 8   PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 191 --LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
             L+  +    ++G + +IA+N  G A  + N    ++
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 15/156 (9%)

Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
              S     +    T   +          +      G P    +WF+ +  I +      
Sbjct: 8   HHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--- 64

Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGV-----VP 236
                 S LI   V ++D+G +     N         + L V +  +  +  V       
Sbjct: 65  ------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118

Query: 237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
                  +S  +  G           +      W K
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 68.0 bits (166), Expect = 7e-14
 Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 19/131 (14%)

Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
                +           +    +         +    G P+P  +WF+ + P+T      
Sbjct: 107 FQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH----- 161

Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
                TK + ++  V +E  G +     N           ++          +   + L 
Sbjct: 162 ----ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII----------IDELNNLG 207

Query: 242 TISSAVINVGQ 252
              +      Q
Sbjct: 208 HPDNKEQTTDQ 218

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 79.1 bits (195), Expect = 3e-18
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 14/144 (9%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
                         +    +     +G   P I+W ++   + +     I       I  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
           L ++ V   D+G +    E+ G         L VE            P F        + 
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE----------GVPFFTVEPKDLAVP 111

Query: 250 VGQLARFDAKISAT-KPLDVYWLK 272
                +   +     +P+ + W +
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWR 135

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSIL 191
            P FT + +          +   E  G P P TI W+R    I              S  
Sbjct: 98  VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPS 148

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVE 224
           ++    +  S +F+  A N  G A   +A + ++
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 131 AKPPVFTKKIQPCRAF----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
            + P +T   +  +        +  +F     G+P+PT++W +             +   
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 187 T-KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
                LIM  V   D G +  + EN  G    + +L V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 82.3 bits (203), Expect = 4e-18
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 12/147 (8%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
              + P       +P                G P P+ +W++     T      ++    
Sbjct: 207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK 266

Query: 188 KS--ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
           +    LI++   +EDSG +  +  N  G       L V            P S      +
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPT 316

Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
             ++ G+ A F  + +      V W+K
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMK 343

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P                 A F  ++ G+P+ T+ W ++   I  S           S+L 
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLR 356

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           +  V  ED G++     N    A+ SA L +
Sbjct: 357 IESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.2 bits (156), Expect = 7e-12
 Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 18/150 (12%)

Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           K PVF K+      F     A  E +  G+P+P I W R D              S   +
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 191 LIMR-----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
           +              + V+A +A N+ G        V           VV   +   ++ 
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADVNK 112

Query: 246 AVINVGQLARFDAKISATKPL---DVYWLK 272
             +  G  A     I +        V W  
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 14/165 (8%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFE---VEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
           +      +   +        + A  +     F  D +  + W  ++             +
Sbjct: 99  RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158

Query: 186 STKS--ILIMRQVFMEDS-GVFAVIAENR-GGKAKCSAN---LVVEEKRQGGRGGVVPPS 238
                  L +R+V  ED    +    ++R  G+ + SA    LV+ E          P +
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE----PISSSAPRT 214

Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV 283
                    + V                   W K    +  K+ V
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAV 259

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
            + +   P +  K      A        E    G+P+P IKW + D   TS         
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWL 253

Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
           S++ +L ++ V  ED G +   AEN  G+      +++             P +L  I+ 
Sbjct: 254 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------QPDWLDVITD 303

Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
              ++G   R+    S      V WL+
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLR 330

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 76.4 bits (188), Expect = 4e-16
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P +   I    A      R+     G P P ++W R+  P+ S    ++    +   L 
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELR 349

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
             ++ +EDSG++  +AEN+ G    SA L V+
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 70.7 bits (173), Expect = 4e-14
 Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 15/145 (10%)

Query: 133 PPVFTKKIQPCRAFE---QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
            PVF ++       E   +++         +P  T +W      +   PD +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGD 62

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
           ++I   V  +D+G +  +A N  G      A+L           G +            I
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF---------GFLQEFSAEERDPVKI 113

Query: 249 NVGQLARFDAKISATKP-LDVYWLK 272
             G    F        P L   WL 
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLL 138

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 60.6 bits (147), Expect = 9e-11
 Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 3/146 (2%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
                ++  P +  E     F        P  + +W   +FP     D +     T   L
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 160

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV--VPPSFLTTISSAVIN 249
            + +    D G ++  A +       S      +            P       +     
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220

Query: 250 VGQLARFDAKISATKPLDVYWLKVSS 275
            GQ+   +          + W K+  
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDG 246

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
            P  T    P                G+P P ++WF     +  S         T     
Sbjct: 4   APTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
              L +      ++G + +IA+N  GK +   +      
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
           S  S  K           +  +A     A    E        + W+++   ++SS   ++
Sbjct: 2   SSGSSGKVV-FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRV 59

Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
                   L+++Q    ++G ++  A    G  + S  L V  +  G
Sbjct: 60  EAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCFG 102

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTK 188
            + PP+  +            A  + +  GDPLP I W +E F      P   I    T 
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT- 63

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
             L ++ + + D+G +  +A +  G+   SA L V E
Sbjct: 64  --LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 77.6 bits (191), Expect = 9e-17
 Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 11/142 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
             +F     P    E + A    +      PTI W  +   +    D +    S   + I
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT--ISSAVINV 250
            R +   D G +               ++ V           VPP+      I +A  N+
Sbjct: 160 -RGIKKTDEGTYRCEGRILARGEINFKDIQVIVN--------VPPTVQARQSIVNATANL 210

Query: 251 GQLARFDAKISATKPLDVYWLK 272
           GQ               + W K
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTK 232

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 133 PPVFTKKIQPCR--AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--K 188
           PP    +       A          + DG P PT+ W ++  PI +  +       +   
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           S L +R V   D   +  IAEN+ G+   S +L V  K
Sbjct: 254 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 15/146 (10%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQI---HTFST 187
           +                +   F  +  GD     I WF  +    S    +I        
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
            S L +    ++D+G++  +     G     + N+ + +             F    +  
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQ 110

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
               G+ A     + ++ P  + W  
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKH 136

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSIL 191
           PPV  +                    G P+PTI W ++   +++     +         L
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---L 64

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            +R   + D+G +  IA    G+A  SA + V+E 
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 126 SEQKPAKPPVFTKKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--F 180
           S   P    ++  K+Q       +E +Q     E    P  TI WFR+   + SS     
Sbjct: 8   SALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNI 67

Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           +I+   + S L +      D G +   A NR G+      LV  + 
Sbjct: 68  KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 15/147 (10%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF----ST 187
           + P   +        + + A    + +G P PTI+WF++  P++++            + 
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
                M+    +D G +  +A+NR G+A    A+L +          V+   F       
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA---------VLRDDFRVEPKDT 118

Query: 247 VINVGQLARFD-AKISATKPLDVYWLK 272
            +  G+ A  +           + W+K
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIK 145

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
              F  + +  R  + + A  E     G P PT+ W ++  P+           S   I 
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167

Query: 191 ----LIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQ 228
               L++  V   D G +  IA+N  G  +   A L+V+ K  
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 128 QKPAKPPVFT---KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
           ++ A+PP         Q       +Q    V F G P P + W +   P+ +S    + T
Sbjct: 16  REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRT 74

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
               ++  +RQ    DSG + +  +    K   +  + V EK
Sbjct: 75  SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 73.7 bits (181), Expect = 4e-16
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 18/142 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSI 190
            P      +            +              W +    +T++        ++   
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-----RKNASNME 57

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
             + +   EDSG +  +  +     K +A + V+            P       S   N 
Sbjct: 58  YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK----------AAPDITGHKRSENKNE 106

Query: 251 GQLARFDAKISATKPLDVYWLK 272
           GQ A    K       +  W K
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRK 128

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-----FQIHTFST 187
            P  T   +     E   A    +  G P P   W +++  +          F I     
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 188 KSIL-IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            + L I+     ED G +   A N  G A  S  L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 105 ELDDDGYY-------AITERKYYALSDLSEQKPAK----PPVFTKKIQPCRAFEQDQARF 153
           E  D G Y       +IT+  +     L           P     + +   A        
Sbjct: 74  EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTL 133

Query: 154 EVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213
           E    G+P+P I+W +   P+ S+ +         ++L +  + +ED G++   AEN  G
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAEISTS----GAVLKIFNIQLEDEGIYECEAENIRG 189

Query: 214 KAKCSANLVVE 224
           K K  A + V+
Sbjct: 190 KDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 2/142 (1%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            P   ++    R  E           +      + +W   +FP+  + D +     T   
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           L +  V   D G ++    +        +  +             P   +         +
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 251 GQLARFDAKISATKPLDVYWLK 272
           GQ    +         D+ W K
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK 149

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 75.5 bits (185), Expect = 1e-15
 Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 8/148 (5%)

Query: 102 DASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
           D+S      Y  ++E        L  Q          +              +V  D   
Sbjct: 21  DSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQVLVDAPG 76

Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
             +  W  +   +   P F +      S +++ ++    +G + +  ++          +
Sbjct: 77  NISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 222 VVEEKRQGGRGGVVPPSFLTTISSAVIN 249
            +          +  P F    +   + 
Sbjct: 136 SIRNTL---LYTLRRPYFRKMENQDALV 160

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 22/149 (14%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFST---- 187
                  +        +      +    +    + W  E+  +     F++ T+ST    
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 188 --KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
                  +  V   D+G +   +     +   SA + + E                T SS
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE----------KGFINATNSS 333

Query: 246 AVINV--GQLARFDAKISATKPLDVYWLK 272
               +   +   F  +  A   +   W  
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 63.9 bits (155), Expect = 8e-12
 Identities = 10/96 (10%), Positives = 17/96 (17%), Gaps = 6/96 (6%)

Query: 133 PPVFTKKIQPCRAF--EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
                           + ++  F V F   P     W                       
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE----QKGLDNGYS 379

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           +          G +   AEN   +      L +   
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 17/141 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
             ++T +    R  E +Q       +  P P ++W   D    S  +        K   +
Sbjct: 140 TLLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKV 197

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
           + ++F  D       A N  G+       +            +  +  TT+    + VG+
Sbjct: 198 LHELFGTD---IRCCARNELGRECTRLFTI-----------DLNQTPQTTLPQLFLKVGE 243

Query: 253 LARFDAKISATKPL-DVYWLK 272
                 K         + W  
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL 264

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 22/104 (21%), Positives = 36/104 (34%)

Query: 120 YALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD 179
           Y++ D    +    P F  K       E   A F         P + W ++D  +  S  
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528

Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           +          L + +V  +D G + V A+N  G  +    L V
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS---PDFQIHTFSTKS 189
           PP   +        + + A    + +G P PTI+W++    + +    P        + S
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 190 ILIMR----QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTIS 244
           +  +R    +    D GV+  +A N  G+A    A+L V          ++   F    S
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA---------ILRDDFRQNPS 119

Query: 245 SAVINVGQLARFDAK-ISATKPLDVYWLK 272
             ++ VG+ A  + +         + W K
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKK 148

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
              F +          + A  E +   G P PTI W ++  P+    +           L
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT---IRGGKL 167

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTT 242
           ++      D+G +  +  N  G+ +   A L V E           PSF+  
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE----------RPSFVKA 209

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 130 PAKPPVF---TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
            +  PV     +          ++     E          W+++   +  S    +    
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
            K  LI+ +  ++DSG F    E           + V++
Sbjct: 63  RKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQD 97

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDF---------PITSSP 178
           +   +F +K Q       +   F  +   + L   PTIKWF+  +          +    
Sbjct: 5   SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64

Query: 179 DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
            F+ H+      + + +     +G +      +     CS +L V E   
Sbjct: 65  TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
                 + +              E    P P I W ++  P+   P           +LI
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLI 60

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           + ++  +D G ++ +A +     + S  + +
Sbjct: 61  LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 68.9 bits (168), Expect = 7e-15
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 14/126 (11%)

Query: 115 TERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI 174
           +   ++  S L  +       F +     + +         E  G P+P I+W+ E    
Sbjct: 4   SHHHHHHSSGLVPRGSH-MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGP 62

Query: 175 TSSP-------------DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
                                +     S + +  +  ED+G +   A N   +   +   
Sbjct: 63  NDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

Query: 222 VVEEKR 227
            V+  R
Sbjct: 123 RVKWVR 128

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 70.2 bits (172), Expect = 8e-15
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
             +F     P    E + A    +      PTI W  +   +    D +    S   + I
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
            R +   D G +               ++ V 
Sbjct: 160 -RGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 15/146 (10%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFRED---FPITSSPDFQIHTFST 187
           +                +   F  +  GD     I WF  +             +     
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 188 KSILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
            S L +    ++D+G++  +     G +++ + N+ +               F    +  
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------FQKLMFKNAPTPQ 110

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
               G+ A     + ++ P  + W  
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKH 136

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 14/142 (9%), Positives = 33/142 (23%), Gaps = 18/142 (12%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
             P   T                      +P     W  +      +             
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QE 427

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           L +  +  ++SG++   A N       +    +    +      +P   +++ +S  +  
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE------LPKPSISSNNSKPVED 481

Query: 251 GQLARFDAKISATKPLDVYWLK 272
                F  +  A       W  
Sbjct: 482 KDAVAFTCEPEAQ-NTTYLWWV 502

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.4 bits (159), Expect = 4e-12
 Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 13/144 (9%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
              P             ++D   F  E +      + W+     +  SP  Q+   +   
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL-WWVNGQSLPVSPRLQL--SNGNR 520

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
            L +  V   D+  +    +N     +     L V            P + + +   +  
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG---------PDTPIISPPDSSY 571

Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
             G         ++       W  
Sbjct: 572 LSGANLNLSCHSASNPSPQYSWRI 595

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 13/141 (9%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P  F          ++D      E +     T  W+  +  +  SP  Q+   +    L 
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLT 345

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
           +  V   D G +    +N           L V            P     + S      G
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG---------PDDPTISPSYTYYRPG 396

Query: 252 QLARFDAKISATKPLDVYWLK 272
                    ++  P    WL 
Sbjct: 397 VNLSLSCHAASNPPAQYSWLI 417

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 17/149 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P   T           +          +P     WF       S+ +  I          
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI---------- 252

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
              + + +SG +   A N       +    +    +       P  F+T+ +S  +    
Sbjct: 253 -PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE------PPKPFITSNNSNPVEDED 305

Query: 253 LARFDAKISATKPLDVYWLKVSSLSDVKR 281
                 +        ++W+   SL    R
Sbjct: 306 AVALTCEPEIQNTTYLWWVNNQSLPVSPR 334

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 11/92 (11%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
            P                          +P P   W     P   +            +L
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVL 606

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            + ++   ++G +A    N       S    +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 13/145 (8%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
            P  P             ++D   F  E +     T  W+  +  +  SP  Q+   +  
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLS--NGN 163

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
             L +  V   D+  +    +N     +  S  L V            P +   +  +  
Sbjct: 164 RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV---------LYGPDAPTISPLNTS 214

Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
              G+        ++  P    W  
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFV 239

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 15/154 (9%), Positives = 41/154 (26%), Gaps = 26/154 (16%)

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI----- 190
            T +  P    E  +    V      L    W++ +    +         + ++      
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61

Query: 191 -----------LIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPS 238
                      L+++ +   D+G + +          + +    V           +P  
Sbjct: 62  SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYP--------ELPKP 113

Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
            +++ +S  +       F  +   T+     W  
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWV 146

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQI-------HT 184
           PP       P  A   ++A     E DG P     WF++   + ++P             
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
             T   L+   +   D+G ++  A N  G    S  + +E
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 19/150 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI---------H 183
                      R  E +  +    + G   P ++W  +    T    +            
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
           TF    I   + V  ED+G +  +    GG +     + +           VPPS  T  
Sbjct: 64  TFLPTGITF-KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL--------VPPSKPTVN 114

Query: 244 SSAVINVGQLARFDAKISATKP-LDVYWLK 272
             +   +G  A          P  +  W K
Sbjct: 115 IPSSATIGNRAVLTCSEQDGSPPSEYTWFK 144

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.9 bits (173), Expect = 5e-14
 Identities = 18/149 (12%), Positives = 37/149 (24%), Gaps = 22/149 (14%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQI-----H 183
                +F          + +     VE++  P P   +W   +   T   +         
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
                S L + ++   + G +  +  N    A  + N+ V             P  LT  
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN----------TKPEILTY- 418

Query: 244 SSAVINVGQLARFDAKISATKPLDVYWLK 272
                +           +      + W  
Sbjct: 419 -----DRLVNGMLQCVAAGFPEPTIDWYF 442

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.5 bits (172), Expect = 6e-14
 Identities = 26/187 (13%), Positives = 44/187 (23%), Gaps = 20/187 (10%)

Query: 99  RVVDASELDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
            +                                       PV +         E ++  
Sbjct: 171 MIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT 230

Query: 153 FEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAV 206
                          W RE+        +            ++ L +    + DSGVF  
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290

Query: 207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP 265
            A N  G A  +  L V +K            F    ++  +N G+      +  A  KP
Sbjct: 291 YANNTFGSANVTTTLEVVDKGF-------INIFPMINTTVFVNDGENVDLIVEYEAFPKP 343

Query: 266 LDVYWLK 272
               W+ 
Sbjct: 344 EHQQWIY 350

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 52.0 bits (124), Expect = 9e-08
 Identities = 16/142 (11%), Positives = 30/142 (21%), Gaps = 9/142 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P       +     E +          DP  T    +         D +        I+I
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172

Query: 193 MRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
                           +  G         L V    +        P    + +S ++  G
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA------VPVVSVSKASYLLREG 226

Query: 252 QLARFDAKISAT-KPLDVYWLK 272
           +       I      +   W +
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKR 248

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 18/106 (16%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF-------REDFPITSSPDFQIHTF 185
            P      +            +    G P PTI W+       R    +       +++ 
Sbjct: 412 KPEILTYDRL------VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465

Query: 186 -----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
                       +     + +G     A N  GK     N   +  
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 24/154 (15%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHT----- 184
           +   F                    ++  G+P P + W R+   +  +   Q        
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59

Query: 185 ----FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSF 239
               +   S L +  + + D+G +  +              + +E            P F
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----------GLPYF 109

Query: 240 LTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
           L       +          +     +P+D+ WL+
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ 143

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 18/106 (16%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSIL 191
            P F ++ +              +  G P P  + W ++  P+ ++P         +S+ 
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP----GHGPQRSLH 161

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPP 237
           +     +  +  F+  A N  G        +           V+P 
Sbjct: 162 VPG---LNKTSSFSCEAHNAKGVTTSRTATIT----------VLPQ 194

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.5 bits (172), Expect = 6e-14
 Identities = 18/148 (12%), Positives = 30/148 (20%), Gaps = 24/148 (16%)

Query: 133 PPVF--TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
                 T   +     + ++  F V F   P     W               + +S    
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS---- 379

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           +          G +   AEN   +      L +             P  L          
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR----------RKPQVLAE-------- 421

Query: 251 GQLARFDAKISATKPLDVYWLKVSSLSD 278
              ++              W K S  S 
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSP 449

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 18/147 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--- 188
                  +        +      +    +    + W  E+  +     F++ T+ST    
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
                  +  V   D+G +   +     +   SA + + EK     G +   +       
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEK-----GFINATNSSEDYE- 337

Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
             I+  +   F  +  A   +   W  
Sbjct: 338 --IDQYEEFCFSVRFKAYPQIRCTWTF 362

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 8/148 (5%)

Query: 102 DASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
           D+S      Y  ++E        L  Q          +              +V  D   
Sbjct: 21  DSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQVLVDAPG 76

Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
             +  W  +   +   P F +      S +++ ++    +G + +  ++          +
Sbjct: 77  NISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 222 VVEEKRQGGRGGVVPPSFLTTISSAVIN 249
            +          +  P F    +   + 
Sbjct: 136 SIRNTL---LYTLRRPYFRKMENQDALV 160

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 17/141 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
             ++T +    R  E +Q       +  P P ++W   D    S  +        K   +
Sbjct: 140 TLLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKV 197

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
           + +            A N  G+  C+    ++          +  +  TT+    + VG+
Sbjct: 198 LHE---LFGTDIRCCARNELGRE-CTRLFTID----------LNQTPQTTLPQLFLKVGE 243

Query: 253 LARFDAKISATKP-LDVYWLK 272
                 K         + W  
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL 264

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 23/106 (21%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-------------EDFPITSSPD 179
            P    +           ++     DG PLP+  W +             E      +  
Sbjct: 415 KPQVLAEASA--------SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466

Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                + + S L M +       +    A N  G +  +  L    
Sbjct: 467 KVFGQWVSSSTLNMSEA--IKGFLVKCCAYNSLGTSCETILLNSPG 510

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
                 +++       D  +       D   +I W R+   +  S   +I    T   + 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI----TGEEVE 57

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           ++     DSG++A +  +  G      ++ V + 
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA 91

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 12/105 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDFQIHTFSTK- 188
             +F  + Q           F     G  L   P +KWF+  +   SS   Q        
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 189 --------SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                     L +       +G +      +      + NL V E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 23/151 (15%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI---------HT 184
                     +  E +  +    + G   P ++W       T+   +            T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA--NLVVEEKRQGGRGGVVPPSFLTT 242
           FS+  I     V  +D+G +  +    GG+       +L V           VPPS  T 
Sbjct: 62  FSSSGITF-SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----------VPPSKPTI 110

Query: 243 ISSAVINVGQLARFD-AKISATKPLDVYWLK 272
              + + +G  A    ++   + P +  W K
Sbjct: 111 SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK 141

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
           PP       P      ++A     E DG P     WF++   + ++   +   F   S  
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163

Query: 191 -------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                  LI   V   DSG +   A+N  G A  S    ++
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
                 +    +         +    G P+P  +WF+ + P+T           TK + +
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH---------ETKKLYM 53

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEE 225
           +  V +E  G +     N           ++++E
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 62.5 bits (152), Expect = 7e-13
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           A+P     +++       D  +       D   +I W R+   +  S   +I    T   
Sbjct: 7   AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI----TGEE 61

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           + +R     DSG++A +  +  G      ++ V
Sbjct: 62  VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 10/124 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
            P   +                   DG P P+++W      +  +               
Sbjct: 3   MPASVQLHTAVEMHHWC---IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
                L + Q    ++G + ++A N  G+A  S      +           P   +T   
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119

Query: 246 AVIN 249
            V  
Sbjct: 120 PVEK 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK----- 188
             F   +Q   A E          DG P P+++W      +  +                
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306

Query: 189 --SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
               L + Q    ++G + ++A N  G+A  S      + 
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           P    ++        D      + +G  L    W   +   +++   +     +  + + 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-VMKSGGLPSLGLTLA 217

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                 +       AEN  G+A+ S  + V  
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF 249

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 62.4 bits (151), Expect = 7e-12
 Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED----FPITSSPDFQIHTFSTK 188
           P   +   +  +  +          +  P P ++W   +     P  ++         + 
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAK 216
           S+ +   +          + +N   +A 
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 27/131 (20%)

Query: 159 GDPLPTIKWFREDFPITS-----------------SPDFQIHTFSTKSILIMRQVFMEDS 201
             P   + WF+                           F IH  +    L++    +   
Sbjct: 20  LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79

Query: 202 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS 261
           G +    +    +     +L V          V P +       +      +      ++
Sbjct: 80  GNYLCRMKLGETEVTKQEHLSV----------VKPLTLSVHSERSQFPDFSVLTVTCTVN 129

Query: 262 ATKPLDVYWLK 272
           A     V WL 
Sbjct: 130 AFPHPHVQWLM 140

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 63.0 bits (153), Expect = 8e-12
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 106 LDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG 159
           + D   Y         E     +     +   +PP    +         + A+       
Sbjct: 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212

Query: 160 DPLPTIKWFRED---FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
             +      +       I  + DFQ + +     L +  V  +D+G+++ +A N  G   
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272

Query: 217 CSANLVVEEK 226
            + N  V E 
Sbjct: 273 ATMNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 12/146 (8%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
                 +    Q     E  +A     +  D     ++   RE           ++ FS 
Sbjct: 86  KDPAHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQV--LRKTVYFFSP 142

Query: 188 KSILIMRQVFMEDSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
               I+R+  + DS  +       G         L V            PP      S  
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV------HPEPPQIKLEPSKL 196

Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
           V   G+ A+     +  +      LK
Sbjct: 197 VRIRGEAAQIVCSATNAEVGFNVILK 222

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 19/141 (13%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            PV             +        +G    +++W         SP + +   S  S L 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPI-----SPYWTLDPESPGSTLT 54

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
            R    +++G +             + +L V++            S+        +  GQ
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP---------AHSWNLLAQEVTVVEGQ 105

Query: 253 LARFDAKISATKPLD-VYWLK 272
            A     I+     D V  ++
Sbjct: 106 EAVLPCLITDPALKDSVSLMR 126

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED---FPITSSPDFQIH 183
           ++    PP  T           + A+         +    + + +     I    DF  +
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239

Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            +     L + QV  + +G ++ +A N  GK   S    V E 
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 11/146 (7%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
                 +    Q    FE   A    +  D      +   R             ++FS  
Sbjct: 86  KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPL--MRHTNYSFSPW 143

Query: 189 SILIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
               + +     S  +   A   G      S  L V++   G      PP+     +  V
Sbjct: 144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPG------PPALTLVPAELV 197

Query: 248 INVGQLARFDAKISAT-KPLDVYWLK 272
              G+ A+     S+     DV+   
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQH 223

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 19/144 (13%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            PV    +                 +G    +++W         SP + +++  + SIL 
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP-----SPHWTLYSDGSSSILS 54

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
                 +++G +             + +L V++             +       V+   Q
Sbjct: 55  TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP---------ARPWNVLAQEVVVFEDQ 105

Query: 253 LARFDAKISATKP-LDVYWLKVSS 275
            A     ++       V  ++V  
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRG 129

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFD-----GDPLPTIKWFREDFPITSSPDFQIHT 184
           P+KP + T + Q  ++        +V F        P  T+ W R       S       
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGA---DVTFICTAKSKSPAYTLVWTRLHNGKLPS-----RA 57

Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                IL +R V   D+G +     N     + +A L V+
Sbjct: 58  MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 19/151 (12%), Positives = 43/151 (28%), Gaps = 9/151 (5%)

Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFE------VEFDGDPLPTIKWFREDFPITSSPDFQ 181
           +         + I   +                 + + + LP ++W+++  P+       
Sbjct: 98  ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--- 154

Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
           IH    K  LI+  V  +  G +   A       +     V+E           P     
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP 214

Query: 242 TISSAVINVGQLARFDAKISATKPLDVYWLK 272
              +  +++G   +    ++       YW  
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSDIAYWKW 245

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 17/143 (11%), Positives = 32/143 (22%), Gaps = 24/143 (16%)

Query: 105 ELDDDGYY-----------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARF 153
                G Y                +      L E KP +P + +   +        Q + 
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229

Query: 154 EVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK------------SILIMRQVFMED- 200
                G       W      I          + +             ++L + ++     
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFY 289

Query: 201 SGVFAVIAENRGGKAKCSANLVV 223
              F   A+N  G       L+ 
Sbjct: 290 KHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
            +   TI W+++D     S +        K  L      +EDSG +  +  N     +  
Sbjct: 32  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91

Query: 219 ANLVVEEK 226
            +    E 
Sbjct: 92  ISAKFVEN 99

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 61.0 bits (147), Expect = 7e-11
 Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 19/182 (10%)

Query: 102 DASELDDDGYYA--ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-D 158
           + +  D    Y   +T +    +  +      KPP    +       ++           
Sbjct: 95  NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILY 154

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
                 I W++ +  +            +   LI+    +EDSG +         + K  
Sbjct: 155 AKHYNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211

Query: 219 ANLVVEEKRQGGRGGVVPPS----FLTTISSAVINVGQLARFDAKISAT----KPLDVYW 270
             +   +        V+P       L       + +G+ A       +T      + + W
Sbjct: 212 IVVSRCKILT-----VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266

Query: 271 LK 272
             
Sbjct: 267 EN 268

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 26/143 (18%)

Query: 105 ELDDDGYY-------------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQA 151
           EL+D G Y              I   +   L+ +  Q      +   KI        + A
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN---VTIGEPA 246

Query: 152 RFEVEFDGDPLP----TIKWFREDFPITSSPDFQIHTFSTK-----SILIMRQVFMEDSG 202
                     L      I W      I           ++      + L    V  E  G
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306

Query: 203 -VFAVIAENRGGKAKCSANLVVE 224
             +     N       +  +V+E
Sbjct: 307 NTYTCRGHNYYFDKTLTTTVVLE 329

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPD--FQIHTFST-- 187
           PP+ +   Q   A   ++ + +      P P  I W  ++  + S     + + T ST  
Sbjct: 14  PPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 188 --KSILIMRQVFMED-SGVFAVIAENRGGKAKCSANLVVE 224
              S L +  +   D   ++   A N  G       L  +
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIHTFSTKS 189
           PP   +        + + A    + +G P PTI+W++    + +  D          + S
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 190 ILIMR----QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSF 239
           +  +R    +    D GV+  +A N  G+A    A+L V                
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA----------AAAHH 113

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 54.4 bits (130), Expect = 8e-09
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 21/135 (15%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP---TIKWFREDFPITSSPDFQIHTFSTK 188
               + +         D         GD PLP   T  W ++D P  ++           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
           + L +     E++G + V  ++        + + + E+             +T      +
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA-------ELIVNITEPQHFYV 104

Query: 249 NVGQLARFDAKISAT 263
           +        A +  +
Sbjct: 105 SSQTDVELHATVKFS 119

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 29/129 (22%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFD---GDPLP-----TIKWFREDFPITSSPDFQ 181
            A+  V   + Q      Q             G            W + +  I ++ D  
Sbjct: 89  EAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT 148

Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
           I  F+            + +GV+ V        +  SA+  +          ++    + 
Sbjct: 149 IQEFTA-----------DKNGVYTVKVWGESEDSAASASTKI----------MLATMNVD 187

Query: 242 TISSAVINV 250
                   V
Sbjct: 188 QDVVESKTV 196

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 16/147 (10%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIH---TFSTK 188
            P  T ++Q  +   +       V   G P   I W  +   + ++         T +  
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
           S+ I+      D        E+   +     + NL V            P   ++   + 
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---------YPPEVSISGYDNN 227

Query: 247 VINVGQLARFDAKISAT-KPLDVYWLK 272
                  A       +  +P    W  
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWST 254

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
            P V            Q++A    +   +P PT   W     P+           +  + 
Sbjct: 216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP------FAVAQGAQ 269

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           L++R V    +        N  G  +    + V
Sbjct: 270 LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 25/92 (27%), Positives = 37/92 (40%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           +  +  +K Q     E    +F    DGDP P I W      + S+      T      L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            +R   ++D+G +  IA N GG     A+L V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
            P  T+          +  + +    +G      +W +     T    +      T  ++
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW--LAEMTSPVI 178

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
            ++    E SG ++   +NR G  +C   L V  
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 23/164 (14%), Positives = 40/164 (24%), Gaps = 39/164 (23%)

Query: 141 QPCRAFEQDQARFEVEFDGDPLPT----IKWFREDFPITSSPDFQIHTF----------- 185
           Q     + + A    +F   P       I+W              I              
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 186 -------------STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
                        S  + + +  + + D G +    +   G A     L V         
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--------- 118

Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVSS 275
            +V PS           +G   +   +    + PL   W K+S 
Sbjct: 119 -LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFR---EDFPITSSPD 179
           S        VF KK           A    + +G  L   PTIKWF+    +    S   
Sbjct: 5   SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64

Query: 180 FQIHTFSTKSI------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
           F        +       L + +V + D G + +  + +     C  N+ VE  R
Sbjct: 65  FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 20/179 (11%)

Query: 105 ELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF---- 157
           EL+D+G Y     T       S L+    AKP  + +  Q     ++ Q    +      
Sbjct: 100 ELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS 159

Query: 158 -DGDPLPTIKWFRED--FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
            +G P   + W                  T +  S   +           A I      +
Sbjct: 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR 219

Query: 215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
            K S  L V+ +         P   +              +   K  A     + +W  
Sbjct: 220 FKESLTLNVQYE---------PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT 269

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
           +P V  +        ++   +   + D +P  T   W   +  +             +++
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTL 285

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
                +    +G +   A N  G       + + E 
Sbjct: 286 FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.8 bits (123), Expect = 8e-08
 Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-----KSILIMRQV 196
            C  FE    +F          T+ W+                        K +L  R  
Sbjct: 28  KCPLFE-HFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPT 86

Query: 197 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARF 256
            + D+G +  +  N    +K +  L V +K       +  P     I   +  +      
Sbjct: 87  LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI-TCPNV 145

Query: 257 DAKISATKPLDVYWLK 272
           D    ++    + W  
Sbjct: 146 DGYFPSSVKPTITWYM 161

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 18/130 (13%)

Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG----VFAVIA 208
            +  F     PTI W+   + I +      +       L      + ++G    V     
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFN----NVIPEGMNLSFLIALISNNGNYTCVVTYPE 200

Query: 209 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD- 267
             R      +  + V           VPP   +     V             +       
Sbjct: 201 NGRTFHLTRTLTVKVVGS----PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256

Query: 268 -----VYWLK 272
                V+W  
Sbjct: 257 DSRNEVWWTI 266

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 28/149 (18%)

Query: 105 ELDDDGYY-----------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARF 153
            + ++G Y                +   +  +   K A PPV           ++     
Sbjct: 185 LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEEL 244

Query: 154 EVE------FDGDPLPTIKWFREDFPITSSPDFQIHTFSTK----------SILIMRQVF 197
            +       F  D    + W  +               S             IL +++V 
Sbjct: 245 LIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVT 304

Query: 198 MEDSGV-FAVIAENRGGKAKCSANLVVEE 225
            ED    +   A +  G+   +A +  + 
Sbjct: 305 SEDLKRSYVCHARSAKGEVAKAAKVKQKV 333

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 23/122 (18%)

Query: 105 ELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
           +++D   Y      +++   L        A               +       +E     
Sbjct: 76  KIEDSDTYICEVEDQKEEVQLLVF--GLTANSDT--------HLLQGQSLTLTLESPPGS 125

Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
            P+++                        L + Q+ ++DSG +         K +   ++
Sbjct: 126 SPSVQCRSPRGKN----------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175

Query: 222 VV 223
           VV
Sbjct: 176 VV 177

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 16/117 (13%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
           G   P   W  +   I S  + ++    T S L M  V   +   +   A     K +  
Sbjct: 27  GCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG 83

Query: 219 ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP---LDVYWLK 272
             + +             P       S  +  G+       ++   P   L++  LK
Sbjct: 84  IQVEIYS----------FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLK 130

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 15/95 (15%)

Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            P   ++  P      E  Q     +  G+PLP +K  ++        +           
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 416

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                V  +  G +   A +  G+      + V  
Sbjct: 417 --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 21/219 (9%), Positives = 53/219 (24%), Gaps = 31/219 (14%)

Query: 73  KGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYY------AITERKYYALSDLS 126
           +G+KE+ R+    E  E+          V          +       +  +      + S
Sbjct: 125 RGEKELKREPAVGEPAEVTTT-------VLVRRDHHGANFSCRTELDLRPQGLELFENTS 177

Query: 127 EQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFPITSSPD 179
                     P    + + P       Q       DG        +     D  +  +  
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237

Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
           +   +FS K+ + +     E +              +    + +             P+ 
Sbjct: 238 YGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIY----------SFPAP 286

Query: 240 LTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD 278
              ++   ++ G       +      + +  +    L  
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP 325

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 14/142 (9%)

Query: 99  RVVDASELDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
            + +                  T       +    +     PV +         + D   
Sbjct: 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207

Query: 153 FEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFST-------KSILIMRQVFMEDSGVF 204
                          W + +         + +++         +  L +    ++DSGVF
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267

Query: 205 AVIAENRGGKAKCSANLVVEEK 226
              A N  G A  +  L V EK
Sbjct: 268 MCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 20/142 (14%), Positives = 29/142 (20%), Gaps = 9/142 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P        P    E   A          +        D   +   D          I I
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD-GKSLPTDLTFVPNPKAGITI 149

Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
                          A+  G         L V E  +        P      +S ++  G
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA------IPVVSVPETSHLLKKG 203

Query: 252 QLARFDAKISAT-KPLDVYWLK 272
                   I      ++  WLK
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLK 225

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 9/115 (7%), Positives = 25/115 (21%), Gaps = 21/115 (18%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
              V     +  +  E +               + W+       +         + K+  
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 191 --------------------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                               L++R   + D+G          G+     +  + +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 19/154 (12%), Positives = 33/154 (21%), Gaps = 40/154 (25%)

Query: 159 GDPLPTIKWFREDFPITSSPDFQIH-----------------------------TFSTKS 189
               P I W +   P  S+  F+ +                                   
Sbjct: 31  DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP 90

Query: 190 ILIMRQVFMEDSG-----VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
            L +  V  +D G     V         G    S  L V                ++T  
Sbjct: 91  TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG------HTPSNNVHVSTAE 144

Query: 245 SAVINVGQLARFDAKISATKPLDVYWLKVSSLSD 278
              ++ G         +     +V W    +  +
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 11/101 (10%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTK--- 188
           P  T + +   A       F            T  W  ++  +  +          +   
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 189 -----SILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVV 223
                +IL +R V     G +  +  N  G +    A L +
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 20/141 (14%)

Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162
           L D G Y          Y    +    P         +         +     + +G P 
Sbjct: 89  LQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVV---DPVTSEHELTCQAEGYPK 145

Query: 163 PTIKWFREDFPITSSPDFQIH------TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
             + W   D  + S      +       F+  S L +       + +F         +  
Sbjct: 146 AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TTNEIFYCTFRRLDPEEN 202

Query: 217 CSANLVVEEKRQGGRGGVVPP 237
            +A LV+ E          PP
Sbjct: 203 HTAELVIPELPL-----AHPP 218

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 135 VFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           VF           +       +E      P+++                        L +
Sbjct: 97  VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN----------IQGGKTLSV 146

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            Q+ ++DSG +         K +   ++VV
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM 198
           K     A   D      +     +  +     +  + S       +      L  ++V +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQV 310

Query: 199 EDSGVFAVIAENRGGKAKCSANLVV 223
           ED GV+   A         S  L V
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKV 335

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 12/99 (12%), Positives = 21/99 (21%), Gaps = 9/99 (9%)

Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG---------DPLPTIKWFREDFPITSS 177
           +                      Q  ++V   G          P   I W   D  I   
Sbjct: 96  DDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGD 155

Query: 178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
            D +        + +     +E SG +         +  
Sbjct: 156 EDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 12/126 (9%), Positives = 32/126 (25%), Gaps = 17/126 (13%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
                  ++      E +          D  +  + ++R                   S 
Sbjct: 81  HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HWNSN 132

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
           L + +  +  +G +      +        ++ V+E        + P   L    ++ +  
Sbjct: 133 LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE--------LFPAPVLNASVTSPLLE 184

Query: 251 GQLARF 256
           G L   
Sbjct: 185 GNLVTL 190

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 132 KPPV-FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----------PDF 180
                    ++  + ++ + A F ++          WF     + S+            +
Sbjct: 6   SGTARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRY 63

Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           +I     +  LI+  V  +DSG     +       + SA L ++E 
Sbjct: 64  RIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQDSAALTIQES 106

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 107 DDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP 163
           D  G Y    + E    A   L       PP            E + A    + +  P  
Sbjct: 59  DQWGEYSCVFLPEPMGTANIQLHG-----PPRVKAVKSSEHINEGETAMLVCKSESVPPV 113

Query: 164 T-IKWFREDFPI------TSSPDFQIHTFSTKSILIMRQVFME-DSGVFAVIAENRGGKA 215
           T   W++            S   F + +   +S L +  + ME D G +     +  G  
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173

Query: 216 KCSANLVV 223
           +    L V
Sbjct: 174 QAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 23/135 (17%)

Query: 149 DQARFEVEFDGDPLPTI--KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 206
            +       +         +W +    +                   +    +  G ++ 
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFKVDSDDQWGEYSC 66

Query: 207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP 265
           +          +AN+ +            PP      SS  IN G+ A    K  +    
Sbjct: 67  VFLPEPMG---TANIQLH----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113

Query: 266 LDVYWLKVSSLSDVK 280
            D  W K++   D  
Sbjct: 114 TDWAWYKITDSEDKA 128

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 13/127 (10%), Positives = 35/127 (27%), Gaps = 9/127 (7%)

Query: 106 LDDDGYY----AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
           + +D  Y     I +R+  + +    +        +         + +         G+ 
Sbjct: 150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNE 209

Query: 162 LPTIKWFRED-----FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
           +   +W              +       +  +SIL +    +EDSG +           +
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269

Query: 217 CSANLVV 223
               + +
Sbjct: 270 DEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 8/113 (7%), Positives = 25/113 (22%), Gaps = 16/113 (14%)

Query: 160 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219
           DP   +    +   +       +     +    +      +   +         +    A
Sbjct: 121 DPQLVVTLHEKKGDVALP----VPYDHQRGFSGI-----FEDRSYICKTTIGDREVDSDA 171

Query: 220 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
             V   +       V   +        V+  G+       +   + ++  W  
Sbjct: 172 YYVYRLQ-------VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY 217

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 19/195 (9%)

Query: 106 LDDDGYYA-ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT 164
            DD G Y          LS     + ++ P      +               F  +    
Sbjct: 84  QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQK 143

Query: 165 IKWFREDFPITSSPDFQI-----------------HTFSTKSILIMRQVFMEDSGVFAVI 207
            K   +   +                          T      +++ Q+ + D+G +   
Sbjct: 144 RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ 203

Query: 208 AENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD 267
           A +     K +A+L V +         +  S +T   +    V  +A+F  + S+ +  D
Sbjct: 204 AGDDSNSNKKNADLQVLKPEPELVYEDLRGS-VTFHCALGPEVANVAKFLCRQSSGENCD 262

Query: 268 VYWLKVSSLSDVKRG 282
           V    +   +    G
Sbjct: 263 VVVNTLGKRAPAFEG 277

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 12/158 (7%)

Query: 106 LDDDGYYA-ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQD---QARFEVEFDGDP 161
             D G+Y  +T       + +  +     P             +       F  +F    
Sbjct: 415 SRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYE 474

Query: 162 LPTIKWFREDFPITSSPD-------FQIHTFSTKSILIMRQVFMEDSGVFA-VIAENRGG 213
               KW         S D             S    L +  V   D G +   + +    
Sbjct: 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534

Query: 214 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
               +  + VEE++  G   V            V++ G
Sbjct: 535 GETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSG 572

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 15/94 (15%)

Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            P   ++  P      E  Q     +  G+PLP +K  ++        +           
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 231

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                V  +  G +   A +  G+      + V 
Sbjct: 232 --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 142 PCRAFEQDQARFEV--EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFME 199
            C A  +     +   E+        K    D    S  + +       S L +  V   
Sbjct: 29  NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL----STLTIDGVTRS 84

Query: 200 DSGVFAVIAENRGGKAKCSANLVVEEK 226
           D G++   A +     K S  + V EK
Sbjct: 85  DQGLYTCAASSGLMTKKNSTFVRVHEK 111

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 14/117 (11%), Positives = 24/117 (20%), Gaps = 10/117 (8%)

Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITS------ 176
           +         V             ++         + +      W               
Sbjct: 97  VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156

Query: 177 --SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
                         S L +  V   D G++   A +     K S  + V E    GR
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEGR 213

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 10/111 (9%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 160 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219
                +            PD    ++ +K    +    +  +G+    A+      +   
Sbjct: 35  ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 94

Query: 220 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 270
            +VV    +      +    L+      ++VG+    +        + + +
Sbjct: 95  YIVVVVGYR------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 17/139 (12%)

Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162
           + D G Y      E      + +             ++      E D        +    
Sbjct: 80  MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG- 138

Query: 163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANL 221
             I+W      +  +    +      SIL +  +  ED+G +     N     +  S  L
Sbjct: 139 ANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196

Query: 222 VVEEKRQGGRGGVVPPSFL 240
            +          +  P   
Sbjct: 197 DI----------IFDPHHH 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 27/154 (17%)

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED----------FPITSSPDFQIHTF 185
            T +  P +  E +     V      L    W++ +          F   S+ +F    +
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 186 STKSI------LIMRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPS 238
           S + I      L+ + + M+D GV+ +   +   +  + +    V +             
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---------VTQ 112

Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
               +++  +            +     ++ WL 
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLSNDIGA-NIQWLF 145

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPITSSPDFQIHTFSTKSI 190
            PV  +        E   A  +       L ++ W   +       +   +I   S    
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD-GT 398

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL 240
           L    V ++D+G++  +  N  G    SA L V                 
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG---------THHHHH 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 121 ALSDLSEQKPA-KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPITSS 177
            L ++ +       P      +     E   A  +      P+ ++KW   +      +S
Sbjct: 339 YLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHAS 396

Query: 178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
              +I   +  ++     V + D+GV+  +  N  G +  SA L V
Sbjct: 397 RHPRISVLNDGTLNF-SHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
                P +  +++   +  S     H ++T             S  F   A N+  K   
Sbjct: 125 MNGTDPELNLYQDGKHLKLSQRVITHKWTT-----------SLSAKFKCTAGNKVSKESS 173

Query: 218 SANLVVEEK 226
              +   EK
Sbjct: 174 VEPVSCPEK 182

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 9/83 (10%)

Query: 143 CRAFEQDQARFEVEFDG---------DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
                  Q  ++V   G          P   I W   D  I    D +        + + 
Sbjct: 5   EEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64

Query: 194 RQVFMEDSGVFAVIAENRGGKAK 216
               +E SG +         +  
Sbjct: 65  EFSELEQSGYYVCYPRGSKPEDA 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 66/220 (30%)

Query: 85  TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKK---- 139
            ET E +++   I     DA   + D            + D+ +       + +K+    
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKD---------VQDMPK------SILSKEEIDH 53

Query: 140 --IQPCRA---------FEQDQARFEVEFDGDPL-PTIKWFREDFPI-TSSPDFQIHTFS 186
             +                  Q     +F  + L    K+           P      + 
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGK----------AKCSANLVVEEKRQGGRG-GVV 235
            +     R     D+ VFA    +R              + + N+++     G  G G  
Sbjct: 114 EQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVLGSG-- 162

Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSS 275
             +++            +     K+       ++WL + +
Sbjct: 163 -KTWV---------ALDVCL-SYKVQCKMDFKIFWLNLKN 191

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 14/147 (9%)

Query: 107 DDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK 166
              GY AI E K           P        +IQ         A F+    G  +   +
Sbjct: 145 GHQGYLAIDEVKVL-------GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDR 197

Query: 167 WFREDFPITSSPDFQIHTFSTK---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
            + +   +  +P  +I   S++   +   +      D+G +  +    GG    +   +V
Sbjct: 198 LWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257

Query: 224 EEKRQGGRGGVVPPSFLTTISSAVINV 250
            ++             L ++ +  + +
Sbjct: 258 VKEPPVPIAPPQ----LASVGATYLWI 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.96
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.95
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.95
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.95
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.95
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.95
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.95
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.94
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.94
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.94
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.93
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.93
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.92
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.92
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.92
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.92
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.92
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.92
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.92
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.92
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.91
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.91
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.91
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.91
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.9
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.9
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.9
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.9
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.89
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.89
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.89
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.89
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.89
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.89
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.89
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.88
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.88
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.88
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.88
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.88
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.87
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.87
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.87
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.87
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.87
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.87
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.87
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.87
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.86
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.85
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.85
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.85
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.85
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.85
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.85
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.84
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.84
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.84
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.84
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.84
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.84
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.84
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.84
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.84
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.84
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.84
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.83
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.83
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.83
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.83
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.83
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.83
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.83
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.83
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.83
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.82
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.82
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.82
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.82
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.82
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.82
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.82
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.82
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.81
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.81
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.81
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.81
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.81
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.8
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.8
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.8
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.8
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.8
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.8
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.8
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.8
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.8
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.79
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.79
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.79
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.79
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.79
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.79
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.78
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.78
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.78
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.78
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.78
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.78
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.78
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.78
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.78
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.78
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.78
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.78
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.78
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.77
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.77
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.77
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.77
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.77
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.77
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.77
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.76
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.76
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.76
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.75
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.75
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.75
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.75
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.74
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.74
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.74
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.74
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.74
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.74
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.73
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.73
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.73
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.73
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.73
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.73
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.73
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.72
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.72
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.72
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.72
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.72
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.72
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.72
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.72
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.72
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.71
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.71
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.71
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.71
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.71
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.71
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.71
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.7
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.7
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.7
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.7
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.7
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.7
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.69
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.69
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.69
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.69
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.69
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.69
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.68
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.68
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.68
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.68
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.68
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.68
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.68
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.68
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.68
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.67
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.67
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.67
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.67
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.66
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.66
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.66
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.66
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.66
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.65
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.65
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.65
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.65
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.65
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.65
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.64
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.64
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.64
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.64
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.64
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.64
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.64
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.64
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.64
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.64
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.64
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.63
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.63
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.63
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.63
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.63
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.63
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.63
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.63
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.63
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.62
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.62
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.62
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.62
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.62
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.62
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.62
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.62
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.62
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.62
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.61
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.61
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.61
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.61
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.61
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.61
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.61
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.6
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.6
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.6
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.6
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.6
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.6
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.6
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.59
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.59
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.59
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.59
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.59
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.59
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.59
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.59
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.59
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.58
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.58
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.58
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.58
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.58
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.58
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.58
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.58
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.58
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.58
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.58
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.58
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.57
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.57
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.57
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.57
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.57
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.57
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.56
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.56
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.56
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.56
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.56
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.56
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.55
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.55
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.54
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.54
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.54
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.54
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.54
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.54
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.54
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.54
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.53
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.53
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.53
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.53
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.53
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.52
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.52
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.52
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.51
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.51
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.51
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.51
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.51
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.51
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.5
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.5
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.5
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.5
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.5
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.5
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.5
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.5
1he7_A	126	High affinity nerve growth factor receptor; transf	99.5
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.49
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.49
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.49
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.49
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.49
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.49
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.48
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.48
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.48
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.48
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.48
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.48
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.48
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.48
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.47
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.47
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.47
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.47
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.47
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.46
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.46
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.46
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.46
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.45
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.45
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.44
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.44
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.44
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.44
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.44
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.44
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.43
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.43
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.43
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.41
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.4
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.4
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.4
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.4
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.39
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.38
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.37
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.36
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.36
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.36
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.35
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.35
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.35
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.34
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.33
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.32
2ens_A	96	Advanced glycosylation END product-specific recept	99.32
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.3
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.3
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.28
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.27
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.27
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.26
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.23
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.22
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.22
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.21
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.2
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.18
3khq_A	133	B-cell antigen receptor complex-associated protei	99.18
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.18
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.15
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.14
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.11
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.11
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.06
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.05
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	98.63
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.03
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.02
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.01
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.01
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.0
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.0
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.99
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.99
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.98
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.98
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.98
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.98
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.97

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.2e-34  Score=256.36  Aligned_cols=245  Identities=19%  Similarity=0.291  Sum_probs=206.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-------EEeecCCCEEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEH   92 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~   92 (283)
                      .+.|.|+|..|..+....|.|..++.....+    .....+.+|+.+.|.|.+.|.|...       ..+....++.+..
T Consensus       267 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~----~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~  342 (570)
T 3b43_A          267 QYTCYASNVAGKDSCSAQLGVQEPPRFIKKL----EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF  342 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEECCBCCCEEEECC----CSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEE
T ss_pred             EEEEEEECCCCcEEEEEEEEeecCCcccccC----CCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEE
Confidence            4789999999999999999988765322111    1112367788999999999998433       3444556677666


Q ss_pred             cCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC
Q psy14060         93 KGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED  171 (283)
Q Consensus        93 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~  171 (283)
                      ......|.|.+++.+|+|.|+|.|.|..|. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++
T Consensus       343 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g  422 (570)
T 3b43_A          343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK  422 (570)
T ss_dssp             ETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETT
T ss_pred             ECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECC
Confidence            667789999999999999999999999884 4455677778898888888888899999999999999999999999999


Q ss_pred             EecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCC
Q psy14060        172 FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG  251 (283)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g  251 (283)
                      ..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.|.|.          .+|.|...+.+..+..|
T Consensus       423 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~----------~~P~~~~~~~~~~~~~g  492 (570)
T 3b43_A          423 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK----------APPRFVKKLSDISTVVG  492 (570)
T ss_dssp             EECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC----------CCCEEEECCCCBCCBTT
T ss_pred             EECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec----------cCCcccccCCCceecCC
Confidence            99988778888877777889999999999999999999999999888888887          48999988888889999


Q ss_pred             CeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        252 QLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       252 ~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      +.+.|.|.+.|.|.|.+.|++||..+.
T Consensus       493 ~~~~l~c~~~g~p~~~v~W~k~~~~~~  519 (570)
T 3b43_A          493 EEVQLQATIEGAEPISVAWFKDKGEIV  519 (570)
T ss_dssp             CCEEEEEEEESCSSCCCEEEETTEECC
T ss_pred             CeEEEEEEEecCCCCEEEEEeCCeEec
Confidence            999999999999999999999986553

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7.9e-33  Score=248.11  Aligned_cols=248  Identities=21%  Similarity=0.295  Sum_probs=205.4

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeec-CCeeeecCcEEEEEEEccCccce-------EEeecCCCEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVH-GKEIHTAKSQQVQKEKKGDKEIV-------RKITATETTEME   91 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~   91 (283)
                      .+.|.|+|..|..+....|.|....   ..|.+...+ ...+.+|+.++|.|.+.|.|...       ..+....++.+.
T Consensus       171 ~Y~C~a~n~~g~~~~~~~l~v~~~~---~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~  247 (570)
T 3b43_A          171 QYNCSASNPLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT  247 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCC---CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEE
T ss_pred             EEEEEEEeCCcEEEEEEEEEEcCCC---CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEE
Confidence            4789999999999888888886532   133333222 22367789999999999988433       344455667766


Q ss_pred             EcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060         92 HKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFR  169 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k  169 (283)
                      .......|.|.+++.+|+|.|+|.|.|..+. .....+.+..+|.+...... ..+..|+.+.|.|.+.|.|.+.+.|+|
T Consensus       248 ~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k  327 (570)
T 3b43_A          248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK  327 (570)
T ss_dssp             EETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEE
T ss_pred             EECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeE
Confidence            6667789999999999999999999999884 44556777788888765543 457889999999999999999999999


Q ss_pred             CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEc
Q psy14060        170 EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN  249 (283)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~  249 (283)
                      ++..+....++.+........|.|.++..+|+|.|+|.|.|..|.....+.|.|..          +|.+...+....+.
T Consensus       328 ~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~----------~P~~~~~~~~~~~~  397 (570)
T 3b43_A          328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETL  397 (570)
T ss_dssp             TTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC----------CCEECSCCCCEEEC
T ss_pred             CCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC----------CCeeecCCCceeec
Confidence            99999887777777777788899999999999999999999999999999999884          78888888888899


Q ss_pred             CCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        250 VGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       250 ~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      +|+.+.|.|.+.|.|.|.+.|++||+.+...
T Consensus       398 ~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~  428 (570)
T 3b43_A          398 KGADVHLECELQGTPPFQVSWHKDKRELRSG  428 (570)
T ss_dssp             TTCCEEEEEEEESSSSCCCEEEETTEECCSS
T ss_pred             CCCEEEEEEEEecCCCCEEEEEECCEECcCC
Confidence            9999999999999999999999999988654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.1e-30  Score=213.94  Aligned_cols=222  Identities=22%  Similarity=0.313  Sum_probs=183.1

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +|.|...+.. .+.+|+.++|.|.+.|.|...       ..+....++.+........|.|.+++.+|+|.|+|.+.|..
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~   84 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA   84 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECC
Confidence            4445443333 467789999999999987332       34445566777666678999999999999999999999988


Q ss_pred             ee-eeeeccCCCCCCeEEecCC-ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        121 AL-SDLSEQKPAKPPVFTKKIQ-PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       121 ~~-~~~~~~~~~~~p~~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      +. .....+.+..+|.+..... ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.+........|.|.++..
T Consensus        85 g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  164 (284)
T 2rik_A           85 GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV  164 (284)
T ss_dssp             EEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCG
T ss_pred             ceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCc
Confidence            74 3344566667787766544 456889999999999999999999999999999887777777777788999999999


Q ss_pred             CCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        199 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      +|.|.|+|.+.|..|.....+.|.|..          +|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus       165 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~  234 (284)
T 2rik_A          165 EDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR  234 (284)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEC----------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC
T ss_pred             ccCEEEEEEEEcCCCceeEEEEEEEec----------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc
Confidence            999999999999999988888888884          6777777777889999999999999999999999999999887


Q ss_pred             CC
Q psy14060        279 VK  280 (283)
Q Consensus       279 ~~  280 (283)
                      ..
T Consensus       235 ~~  236 (284)
T 2rik_A          235 SG  236 (284)
T ss_dssp             BT
T ss_pred             CC
Confidence            54

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.7e-29  Score=206.35  Aligned_cols=224  Identities=17%  Similarity=0.147  Sum_probs=165.0

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-EEeec-----CCCEEEE--EcCCEEEEEEccCCC-CCCeEEEEEEEe
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-RKITA-----TETTEME--HKGKIQERVVDASEL-DDDGYYAITERK  118 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-~~~~~-----~~~~~~~--~~~~~~~L~i~~~~~-~D~G~Y~C~a~n  118 (283)
                      .|.|...+.. .+.+|+.+.|.|.+.|.|... .|...     ..++...  ..+....|.|.+++. +|+|.|+|.+.|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   85 (304)
T 2yd9_A            6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN   85 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEEC
T ss_pred             CCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEEC
Confidence            4555543333 467888999999999988432 33222     2334433  233458899999998 999999999999


Q ss_pred             ccee-eeeeccCCCC-------CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEEEeCCEE
Q psy14060        119 YYAL-SDLSEQKPAK-------PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKS  189 (283)
Q Consensus       119 ~~~~-~~~~~~~~~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~  189 (283)
                      ..+. .....+.+..       .|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ...+... ...
T Consensus        86 ~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~  164 (304)
T 2yd9_A           86 SVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL-RSG  164 (304)
T ss_dssp             SSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC-TTS
T ss_pred             CCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC-CCe
Confidence            8774 2222232222       2677777777889999999999999999999999999999876432 1112121 223


Q ss_pred             EEEEcCCCCCCCEEEEEEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCee
Q psy14060        190 ILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDV  268 (283)
Q Consensus       190 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v  268 (283)
                      .|.|.++..+|+|.|+|.+.|..|..... +.+.|....       .+|.+...+....+.+|+.+.|.|.+.|.|.|.+
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~-------~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v  237 (304)
T 2yd9_A          165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-------VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV  237 (304)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC-------EEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEE
T ss_pred             EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec-------cCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEE
Confidence            69999999999999999999999876643 556654311       3677877777778999999999999999999999


Q ss_pred             EEeeCCEEecCC
Q psy14060        269 YWLKVSSLSDVK  280 (283)
Q Consensus       269 ~W~~~g~~l~~~  280 (283)
                      .|++||..+...
T Consensus       238 ~W~~~~~~l~~~  249 (304)
T 2yd9_A          238 KWMQGAEDLTPE  249 (304)
T ss_dssp             EEEETTEECSCS
T ss_pred             EEEECCEECCCc
Confidence            999999998654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=1.2e-28  Score=210.53  Aligned_cols=242  Identities=16%  Similarity=0.171  Sum_probs=172.2

Q ss_pred             cceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEcc-Cccce-EEee------cCCCEE
Q psy14060         19 ILKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKG-DKEIV-RKIT------ATETTE   89 (283)
Q Consensus        19 ~~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g-~~~i~-~~~~------~~~~~~   89 (283)
                      =.+.|+|+|..|.. +....+.+...+.....+.    ....+.+|+.+.|.|.... .+.+. .|+.      ...+..
T Consensus        76 G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~----~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~  151 (384)
T 3kld_A           76 GTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR----STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF  151 (384)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEEECCCSCCCC----CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEE
T ss_pred             EEEEEEEEcCcccEEecceEEEEecccccccCCC----CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEE
Confidence            36789999999986 4455666655433222221    1124778899999997642 23222 3322      122222


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeee----c-------cCCCCCCeEE-ecCCceeecCCCcEEEEEEE
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYYALSDLS----E-------QKPAKPPVFT-KKIQPCRAFEQDQARFEVEF  157 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~----~-------~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~  157 (283)
                      +..  ....|.|.+++.+|+|.|+|.+.|..+.....    .       +....+|.+. ..+....+..|+.+.|.|.+
T Consensus       152 ~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~  229 (384)
T 3kld_A          152 VSQ--ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA  229 (384)
T ss_dssp             ECT--TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE
T ss_pred             EEc--CCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE
Confidence            221  23469999999999999999999986532110    0       1111233333 23455678899999999999


Q ss_pred             eeecCCEEEEEeCCE-ecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCC
Q psy14060        158 DGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVP  236 (283)
Q Consensus       158 ~g~p~~~~~W~k~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~  236 (283)
                      .|.|.|.+.|++++. .+....  ..  ......|.|.++..+|+|.|+|.|.|..|.......|.|..          +
T Consensus       230 ~g~P~p~i~W~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~----------~  295 (384)
T 3kld_A          230 LGNPVPTILWRRADGKPIARKA--RR--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------Q  295 (384)
T ss_dssp             EEESCCEEEEEETTCCCCCTTC--EE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------E
T ss_pred             eecCCCcEEEEeCCCccccccc--ee--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------C
Confidence            999999999999544 443321  11  12344799999999999999999999999998889998885          6


Q ss_pred             CeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       237 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.+...+.+..+..|+.+.|.|.+.|.|.|.|+|++||+++...
T Consensus       296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~  339 (384)
T 3kld_A          296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR  339 (384)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCB
T ss_pred             CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCC
Confidence            78888888889999999999999999999999999999998653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.96  E-value=4.5e-28  Score=207.83  Aligned_cols=241  Identities=19%  Similarity=0.197  Sum_probs=177.2

Q ss_pred             ceEEEEEcCCeee--eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecC---------CC
Q psy14060         20 LKSRTASSDRSGV--STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITAT---------ET   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~---------~~   87 (283)
                      .+.|.|.|..+..  +....+.|..++.....+.     ...+.+|+.+.|.|.+.|.|... .|...+         .+
T Consensus        96 ~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~-----~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~  170 (403)
T 3laf_A           96 LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE-----SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR  170 (403)
T ss_dssp             EEEEEEECGGGCEEECCCEEEEECCCCEECSCCC-----CEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCS
T ss_pred             EEEEEEEeCCCccEEEEEEEEEecCCCccccCCC-----cEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceE
Confidence            4678898754433  4556677766443222221     12467788999999999888433 333222         22


Q ss_pred             EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccCCCCC------CeEEecCCceeecCCCcEEEEEEEee
Q psy14060         88 TEMEHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQKPAKP------PVFTKKIQPCRAFEQDQARFEVEFDG  159 (283)
Q Consensus        88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~~~~~------p~~~~~~~~~~~~~g~~v~l~C~~~g  159 (283)
                      ....   ....|.|.+++.+|+|.|+|.+.|..+..  ....+.+..+      +.+...+....+..|+.+.|.|.+.+
T Consensus       171 ~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  247 (403)
T 3laf_A          171 VVVL---PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG  247 (403)
T ss_dssp             EEEC---TTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEE
T ss_pred             EEEc---CCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCC
Confidence            2222   23479999999999999999999976532  1122222222      23445566778889999999999999


Q ss_pred             ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeE
Q psy14060        160 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF  239 (283)
Q Consensus       160 ~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~  239 (283)
                      .|.+.+.|++++..+...........  ...|.|.++..+|.|.|+|.+.|..|.....+.|.|..          +|.+
T Consensus       248 ~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~  315 (403)
T 3laf_A          248 YPPPSFTWLRGEEVIQLRSKKYSLLG--GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------PPWF  315 (403)
T ss_dssp             ESCCEEEEEETTEECCCSSSSEEEET--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------EEEE
T ss_pred             CCCCeEEEEECCeeccCCCceEEECC--ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC----------CCcE
Confidence            99999999999998865433222222  23699999999999999999999999988889999885          6888


Q ss_pred             EecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        240 LTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       240 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ...+....+.+|+.+.|.|.+.|.|.|.+.|++||..+...
T Consensus       316 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (403)
T 3laf_A          316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS  356 (403)
T ss_dssp             EECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCS
T ss_pred             eecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCC
Confidence            88888888999999999999999999999999999987543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=2e-27  Score=195.00  Aligned_cols=211  Identities=16%  Similarity=0.185  Sum_probs=159.8

Q ss_pred             eeeecCcEEEEEEEccCc-cce-EEee-c-------CCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEEeccee--eee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-RKIT-A-------TETTEME-HKGKIQERVVDASELDDDGYYAITERKYYAL--SDL  125 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-~~~~-~-------~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~  125 (283)
                      .+.+|+.+.|.|.+.|.+ ... .|.. .       ..++.+. ..+....|.|.+++.+|+|.|+|.+.|..+.  ...
T Consensus        13 ~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~   92 (291)
T 1qz1_A           13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT   92 (291)
T ss_dssp             EEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEE
T ss_pred             eEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEE
Confidence            477899999999999976 232 4433 1       2233332 2346789999999999999999999998752  334


Q ss_pred             eccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       126 ~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      ..+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+........... ....|.|.++..+|.|.|+
T Consensus        93 ~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~  171 (291)
T 1qz1_A           93 VNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYR  171 (291)
T ss_dssp             EEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC-TTSCEEETTCCGGGCEEEE
T ss_pred             EEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc-cCCcEEEccCccccCeEEE
Confidence            455566688888888888899999999999999999999999999988754322222211 1235999999999999999


Q ss_pred             EEEEeCCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCC--ceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        206 VIAENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       206 C~a~n~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.+.|..+...  ....+.|..          +|.+.....  ...+..|+.+.|.|.+.|.|.|.+.|+++|+.+...
T Consensus       172 C~a~n~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~  240 (291)
T 1qz1_A          172 CEGRILARGEINFKDIQVIVNV----------PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE  240 (291)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEEE----------EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             EEEEecCCCceeeEEEEEEEec----------CCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence            99999764433  345566653          566655433  446789999999999999999999999999988754

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=5.2e-28  Score=207.45  Aligned_cols=241  Identities=15%  Similarity=0.160  Sum_probs=179.1

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-ccCccce-EEeec-------CCCEE
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-KGDKEIV-RKITA-------TETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~~~i~-~~~~~-------~~~~~   89 (283)
                      .+.|.|.|..|.. +....|.|...+.....+.    ....+.+|+.+.|.|.+ .|.|... .|...       ..++.
T Consensus        91 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~----~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  166 (404)
T 3p3y_A           91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENL----DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS  166 (404)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCCCCCCCCC----CCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEE
T ss_pred             EEEEEEEcCCCeEeeeeEEEEEeccCccccCCC----CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEE
Confidence            4789999999987 4678888887654322211    11247778899999999 6777332 33322       23333


Q ss_pred             EEEcCCEEEEEEccCCCCC-CeEEEEEEEecceeee----eeccC-------CCCCCeEEecC---CceeecCCCcEEEE
Q psy14060         90 MEHKGKIQERVVDASELDD-DGYYAITERKYYALSD----LSEQK-------PAKPPVFTKKI---QPCRAFEQDQARFE  154 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~~----~~~~~-------~~~~p~~~~~~---~~~~~~~g~~v~l~  154 (283)
                      ..   ....|.|.+++.+| +|.|+|.+.|..+...    ...+.       ...+|.+....   ....+..|+.+.|.
T Consensus       167 ~~---~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~  243 (404)
T 3p3y_A          167 QG---HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE  243 (404)
T ss_dssp             EC---TTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEE
T ss_pred             Ec---CCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEE
Confidence            32   23368999999999 5999999998765211    11111       12234443322   23568899999999


Q ss_pred             EEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCC
Q psy14060        155 VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV  234 (283)
Q Consensus       155 C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~  234 (283)
                      |.+.+.|.+.+.|++++..+..... ..  ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..         
T Consensus       244 C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------  311 (404)
T 3p3y_A          244 CIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---------  311 (404)
T ss_dssp             CCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE---------
T ss_pred             EEECCCCCCcEEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC---------
Confidence            9999999999999999998765432 22  12234799999999999999999999999988888888885         


Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                       +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++||..+...
T Consensus       312 -~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (404)
T 3p3y_A          312 -APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA  356 (404)
T ss_dssp             -EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGS
T ss_pred             -CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCC
Confidence             678888888889999999999999999999999999999998754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=199.49  Aligned_cols=209  Identities=15%  Similarity=0.273  Sum_probs=157.2

Q ss_pred             eeeecCcEEEEEEEccCcc-ce------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccC
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQK  129 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~  129 (283)
                      .+.+|+.+.|.|.+.|.|. +.      ..+....++.+...+....|.|.+++.+|+|.|+|.+.|..+..  ....+.
T Consensus        15 ~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~   94 (291)
T 2wim_A           15 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE   94 (291)
T ss_dssp             EEETTCCEEEEEEEESCCSEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEE
T ss_pred             EecCCCcEEEEEEEeCCCCceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEE
Confidence            4778899999999999883 32      12233456777767778899999999999999999999987642  333455


Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..   ...|.|.++..+|.|.|+|.
T Consensus        95 v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~  171 (291)
T 2wim_A           95 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCE  171 (291)
T ss_dssp             EECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT---TSCEEETTCCGGGCEEEEEE
T ss_pred             ecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc---CCCEEEEecchhhCEEEEEE
Confidence            55677776667778899999999999999999999999999987764  22333322   23599999999999999999


Q ss_pred             EEeCCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCC--ceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        208 AENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       208 a~n~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      +.|..+...  ....+.+..          +|.+.....  ...+.+|+.+.|.|.+.|.|.|.+.|++||+.+...
T Consensus       172 ~~n~~~~~~~~~~~~~~v~~----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          172 GRVEARGEIDFRDIIVIVNV----------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             EEETTTTEEEEEEEEEEEEB----------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred             EEECCCCeeEEeeEEEEecc----------CCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence            999875433  334555553          555544433  345789999999999999999999999999988654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.96  E-value=5.7e-28  Score=214.43  Aligned_cols=240  Identities=11%  Similarity=0.108  Sum_probs=170.7

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEccCcc-c-eEEeecCCC--------
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKGDKE-I-VRKITATET--------   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~-i-~~~~~~~~~--------   87 (283)
                      .+.|.|.|..|.. +....|.|...+  ...|.+..... ..+.+|+.+.|.|.+.|.|. . ..|...+..        
T Consensus       183 ~Y~C~a~n~~~~~~s~~~~l~V~~~~--~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~  260 (524)
T 2ec8_A          183 CLHCSVDQEGKSVLSEKFILKVRPAF--KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN  260 (524)
T ss_dssp             EEEEEEC----CCCCCCEECCEECCC--CSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEE
T ss_pred             eEEEEEEECCceEEEEEEEEEEEeCC--CCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccc
Confidence            6889999987766 446777776321  11233332211 14778899999999999883 3 244443333        


Q ss_pred             EEEE---EcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecC---CceeecCCCcEEEEEEEeee
Q psy14060         88 TEME---HKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKI---QPCRAFEQDQARFEVEFDGD  160 (283)
Q Consensus        88 ~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~  160 (283)
                      ..+.   .......|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+...+   ....+..|+.+.|.|.+.|.
T Consensus       261 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~  340 (524)
T 2ec8_A          261 SWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAF  340 (524)
T ss_dssp             EEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEE
T ss_pred             cccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeec
Confidence            1111   0123678999999999999999999998874 334455666677776544   35789999999999999999


Q ss_pred             cCCE-EEEEeCCEecCCCC-CeEEEEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCC
Q psy14060        161 PLPT-IKWFREDFPITSSP-DFQIHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV  234 (283)
Q Consensus       161 p~~~-~~W~k~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~  234 (283)
                      |.|. +.|++++..+.... ++......    ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..         
T Consensus       341 P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~---------  411 (524)
T 2ec8_A          341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT---------  411 (524)
T ss_dssp             SCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE---------
T ss_pred             CCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec---------
Confidence            9998 99999999887654 33222211    246899999999999999999999999988888888874         


Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                       +|.+...+.   +.+|   .|.|.+.|.|.|.|+|+++|..+
T Consensus       412 -~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          412 -KPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             -EEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred             -CCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence             677766543   3456   99999999999999999998665

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=207.15  Aligned_cols=240  Identities=9%  Similarity=-0.032  Sum_probs=158.8

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEE-EcCCEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEME-HKGKIQ   97 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~-~~~~~~   97 (283)
                      .+.|.|+|..|..+..+.|.|..++...  +..+.    .+..|+.+.|.|.+.|.|... .|.......... ......
T Consensus       117 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~~--~~~p~----~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~  190 (423)
T 3qs7_E          117 EYLLFIQSEATNYTILFTVSIRNTLLYT--LRRPY----FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV  190 (423)
T ss_dssp             EEEEEEEC--CEEEEEEEEEEC-----C--EEEEE----EEECSSSSCEEEEEEESSCCEEEEEEC-------------C
T ss_pred             EEEEEEEcCCCcEEEEEEEEEecCcccc--ccCCc----EeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccc
Confidence            4689999999999999999998654321  11111    133466788999999999433 444322211000 000000


Q ss_pred             EEEEcc-CCCCCCeEEEEEEEecceeee--eeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEe
Q psy14060         98 ERVVDA-SELDDDGYYAITERKYYALSD--LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFP  173 (283)
Q Consensus        98 ~L~i~~-~~~~D~G~Y~C~a~n~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~  173 (283)
                      .+.... ....|+|.|+|.|.|..|...  ...+.+..+|.+  .+....+.+|+.+.|.|.+.| .|.+.+.|+|++..
T Consensus       191 ~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~  268 (423)
T 3qs7_E          191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA  268 (423)
T ss_dssp             EEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSB
T ss_pred             ccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEE
Confidence            011111 157899999999999988432  234445444443  345678899999999999998 57799999999987


Q ss_pred             cCCCCCeEEE-E-----eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecC--Cc
Q psy14060        174 ITSSPDFQIH-T-----FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI--SS  245 (283)
Q Consensus       174 ~~~~~~~~~~-~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~--~~  245 (283)
                      +.....+... .     ......|.|.++..+|+|.|+|.|.|.   ....+.|.|..          +|.+...+  ..
T Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~----------~p~i~~~~~~~~  335 (423)
T 3qs7_E          269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE----------KGFINATNSSED  335 (423)
T ss_dssp             CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES----------SCEEEEC---CE
T ss_pred             ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe----------CCcceEcCCCcc
Confidence            7543222111 1     112346999999999999999999987   56667888874          55555433  34


Q ss_pred             eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        246 AVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       246 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ..+.+|+.+.|.|.+.|+|.|.|+|+|||+.|...
T Consensus       336 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~  370 (423)
T 3qs7_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (423)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             EEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCc
Confidence            56789999999999999999999999999998554

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=1.9e-27  Score=202.72  Aligned_cols=239  Identities=19%  Similarity=0.219  Sum_probs=174.5

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEc-cCccce-EEeecC--------CCE
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKK-GDKEIV-RKITAT--------ETT   88 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~-g~~~i~-~~~~~~--------~~~   88 (283)
                      .+.|.|+|..|.. +....|.|...+.....+.    ....+.+|+.+.|.|.+. +.|... .|....        .+.
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~----~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~  151 (382)
T 1cs6_A           76 SYQCVATNARGTVVSREASLRFGFLQEFSAEER----DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR  151 (382)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEECCCCSSCC----CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSE
T ss_pred             EEEEEEEcCCcEEEecceEEEeeccccccccCC----CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceE
Confidence            5789999999976 3356666665443222211    112467788999999864 445332 333322        222


Q ss_pred             EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee--ee----eecc------CCCCCCeEEec-CCceeecCCCcEEEEE
Q psy14060         89 EMEHKGKIQERVVDASELDDDGYYAITERKYYAL--SD----LSEQ------KPAKPPVFTKK-IQPCRAFEQDQARFEV  155 (283)
Q Consensus        89 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~----~~~~------~~~~~p~~~~~-~~~~~~~~g~~v~l~C  155 (283)
                      ...  .....|.|.+++.+|+|.|+|.+.|..+.  ..    ...+      ....+|.+... +....+..|+.+.|.|
T Consensus       152 ~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C  229 (382)
T 1cs6_A          152 FVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLEC  229 (382)
T ss_dssp             EEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEEC
T ss_pred             EEe--cCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEE
Confidence            222  22357999999999999999999987631  11    1111      12224555443 4567889999999999


Q ss_pred             EEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCC
Q psy14060        156 EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVV  235 (283)
Q Consensus       156 ~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~  235 (283)
                      .+.+.|.+.+.|++++..+....      ......|.|.++..+|.|.|+|.+.|..|.....+.|.|..          
T Consensus       230 ~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------  293 (382)
T 1cs6_A          230 FAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------  293 (382)
T ss_dssp             EEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------
T ss_pred             EEccCCCCEEEEEECCcccccEE------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------
Confidence            99999999999999887765311      12334699999999999999999999999988888888885          


Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++||+.+...
T Consensus       294 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  338 (382)
T 1cs6_A          294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ  338 (382)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC
T ss_pred             CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC
Confidence            678888888889999999999999999999999999999998754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=8e-28  Score=213.17  Aligned_cols=227  Identities=13%  Similarity=0.048  Sum_probs=160.5

Q ss_pred             ceEEEEEcCCeeeeee-eEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEc-cCccce-EEeecCC------CEEE
Q psy14060         20 LKSRTASSDRSGVSTE-ETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKK-GDKEIV-RKITATE------TTEM   90 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~-g~~~i~-~~~~~~~------~~~~   90 (283)
                      .+.|.|+|..|..... +.|.|...+..  .|.     ...+.+|+.+.|.|.+. |.|... .|...+.      .+..
T Consensus       205 ~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~-----~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~  277 (527)
T 3qs9_E          205 DIRCCARNELGRECTRLFTIDLNQTPQT--TLP-----QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM  277 (527)
T ss_dssp             CEEEEEECSSCEEEEECEEEESSSCCCC--SCC-----EEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEE
T ss_pred             EEEEEEEeCCCcccceEEEEEEeccCcc--CCC-----ceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeee
Confidence            3889999999997655 77777766543  111     12366788999999996 777432 4443322      1111


Q ss_pred             E--E----cCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCCeEEecC--CceeecCCCcEEEEEEEeeecC
Q psy14060         91 E--H----KGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKI--QPCRAFEQDQARFEVEFDGDPL  162 (283)
Q Consensus        91 ~--~----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~  162 (283)
                      .  .    ......|.|.+++.+|+|.|+|.|.|.  ......+.+..+|.+...+  ....+..|+.+.|.|.+.|.|.
T Consensus       278 ~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~  355 (527)
T 3qs9_E          278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ  355 (527)
T ss_dssp             EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE--EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESC
T ss_pred             eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC--CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCC
Confidence            0  0    012456999999999999999999988  3334445555566655433  3356788999999999999999


Q ss_pred             CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEec
Q psy14060        163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT  242 (283)
Q Consensus       163 ~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~  242 (283)
                      |.+.|+|++..+....++.    .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.          .+|.+...
T Consensus       356 p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~----------~~P~i~~~  421 (527)
T 3qs9_E          356 IRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR----------RKPQVLAE  421 (527)
T ss_dssp             CEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------------CCCEEEEC
T ss_pred             CEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe----------cCCeEEEe
Confidence            9999999999886544321    133469999999999999999999999999888888887          47887765


Q ss_pred             CCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        243 ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       243 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      +.      |  ..|.|.+.|.|.|.|.|++++...
T Consensus       422 ~~------~--~~l~C~a~g~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          422 AS------A--SQASCFSDGYPLPSWTWKKCSDKS  448 (527)
T ss_dssp             CC------C--E---EEEECSSCCEEEEECCC---
T ss_pred             CC------C--CEEEEEEEEEcCCeEEEEECCCCc
Confidence            42      2  357999999999999999876543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=7.7e-27  Score=211.98  Aligned_cols=237  Identities=11%  Similarity=0.059  Sum_probs=178.3

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCC-CCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCE
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVS-VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKI   96 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~-~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~   96 (283)
                      .+.|.|.|..|.. +....|.|...+.. ...|     ....+..|+.+.|.|.+.|.|... .|...+..  +.   ..
T Consensus       356 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~--~~---~~  425 (642)
T 1e07_A          356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISP-----SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNI--QQ---HT  425 (642)
T ss_pred             eEEEEEeCCCCCcceeeEEEEEEcCCCCCeecC-----CceEecCCCcEEEEEEcCccCCCeEEEEECCEE--cC---CC
Confidence            4689999999874 55678888865432 1111     122467888999999999988443 55443322  11   34


Q ss_pred             EEEEEccCCCCCCeEEEEEEEecceeee---eeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC
Q psy14060         97 QERVVDASELDDDGYYAITERKYYALSD---LSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE  170 (283)
Q Consensus        97 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~---~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~  170 (283)
                      ..|.|.+++.+|+|.|+|.|.|..+...   ...+.+.   .+|.+. ......+..|+.+.|.|.+.+ |.+.+.|+++
T Consensus       426 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~  503 (642)
T 1e07_A          426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSIS-SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVN  503 (642)
T ss_pred             ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEe-cCCceeecCCCeEEEEEECCC-CCcEEEEEEC
Confidence            5799999999999999999999986321   1222222   244443 344567889999999999985 8899999999


Q ss_pred             CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEc
Q psy14060        171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVIN  249 (283)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~  249 (283)
                      +..+....++.+...  ...|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..         .|+.+...+....+.
T Consensus       504 g~~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~---------~p~~~~~~~~~~~v~  572 (642)
T 1e07_A          504 GQSLPVSPRLQLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY---------GPDTPIISPPDSSYL  572 (642)
T ss_pred             CEeCCCCCcEEEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEe---------CCCcceecCCceeEE
Confidence            999887666655432  357999999999999999999999987544 57888875         255566666778899


Q ss_pred             CCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        250 VGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       250 ~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .|+.+.|.|.+.|.|.|.+.|++||..+..
T Consensus       573 ~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~  602 (642)
T 1e07_A          573 SGANLNLSCHSASNPSPQYSWRINGIPQQH  602 (642)
T ss_pred             cCCcEEEEEEeccCCCCeEEEEECCEECcc
Confidence            999999999999999999999999998764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.95  E-value=3.2e-28  Score=202.10  Aligned_cols=230  Identities=13%  Similarity=0.128  Sum_probs=164.0

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEccC-cc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKGD-KE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~-~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      .|.|.......+.+|+.++|.|.+.+. |.  +.     ..+....++.+.  .+...|.|.+++.+|+|.|+|.+.|..
T Consensus         7 ~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~   84 (317)
T 2y25_A            7 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDR   84 (317)
T ss_dssp             CCEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred             CCcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEEEECCC
Confidence            455553333457889999999999987 42  32     233334444433  245799999999999999999999988


Q ss_pred             eee-eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee----------ecCCEEEEEeCCEecCCCCCeEEEEeCCEE
Q psy14060        121 ALS-DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG----------DPLPTIKWFREDFPITSSPDFQIHTFSTKS  189 (283)
Q Consensus       121 ~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g----------~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~  189 (283)
                      +.. ....+.+..+|.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++..+....++.+...+...
T Consensus        85 g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  164 (317)
T 2y25_A           85 GKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI  164 (317)
T ss_dssp             CEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEE
T ss_pred             CcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEE
Confidence            743 333444433443333333445566777777777766          688999999999998877778887777778


Q ss_pred             EEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEec----------cCCCCCCCCCCeEEec-CCceEEcCCCeEEEEE
Q psy14060        190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK----------RQGGRGGVVPPSFLTT-ISSAVINVGQLARFDA  258 (283)
Q Consensus       190 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~----------~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C  258 (283)
                      .|.|.++..+|.|.|+|.+.|..|.......+.+...          .........+|.+... +....+..|+.+.|.|
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C  244 (317)
T 2y25_A          165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC  244 (317)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEE
T ss_pred             EEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEE
Confidence            8999999999999999999999988887777664310          0000000124555554 4456899999999999


Q ss_pred             EEEeeCCCeeEEeeCCEEecCC
Q psy14060        259 KISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       259 ~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      .+.|.|.|.+.|+++|+.+...
T Consensus       245 ~~~g~p~p~i~W~~~g~~~~~~  266 (317)
T 2y25_A          245 NVWGDPPPEVSWLKNEKALASD  266 (317)
T ss_dssp             EEECSSCCEEEEEESSSEECCC
T ss_pred             EEecCCCCEEEEEECCEeCCCC
Confidence            9999999999999999888654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.95  E-value=2.1e-27  Score=210.79  Aligned_cols=240  Identities=12%  Similarity=0.030  Sum_probs=175.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEee-------cCCCEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKIT-------ATETTEME   91 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~-------~~~~~~~~   91 (283)
                      .+.|.|+|  | .+....|.|..++.....+     ....+.+|+.+.|.|.+.|.+... .|..       ...++.+.
T Consensus        94 ~Y~C~a~n--g-~~~~~~l~V~~p~~~~~~~-----~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~  165 (524)
T 2ec8_A           94 KYTCTNKH--G-LSNSIYVFVRDPAKLFLVD-----RSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD  165 (524)
T ss_dssp             EEEEEETT--S-CEEEEEEECCCSSCSBCCC-----CCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEE
T ss_pred             EEEEeecC--C-cceEEEEEECCCCcccccc-----cceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeEC
Confidence            46789999  5 3777888887654432221     122477788999999999877222 4432       23334433


Q ss_pred             EcCCEEEEEEccCCCCCCe-EEEEEEEecceee--eeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeeecCCE
Q psy14060         92 HKGKIQERVVDASELDDDG-YYAITERKYYALS--DLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT  164 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~~~--~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~  164 (283)
                      .   ...|.|.+++.+|+| .|+|.+.|..+..  ....+.+    ..+|.+...+....+..|+.+.|.|.+.+.|.+.
T Consensus       166 ~---~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~  242 (524)
T 2ec8_A          166 P---KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV  242 (524)
T ss_dssp             T---TTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTC
T ss_pred             C---CccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcE
Confidence            2   236899999999999 9999999886632  2333443    3688888888888899999999999999988876


Q ss_pred             -EEEEeCCEec--CCCCCeEEE---EeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCe
Q psy14060        165 -IKWFREDFPI--TSSPDFQIH---TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS  238 (283)
Q Consensus       165 -~~W~k~~~~~--~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~  238 (283)
                       +.|++++..+  .......+.   .......|.|.++..+|+|.|+|.+.|..|.....+.|.|..          +|.
T Consensus       243 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~  312 (524)
T 2ec8_A          243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD----------KGF  312 (524)
T ss_dssp             EEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES----------SCE
T ss_pred             EEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec----------cCc
Confidence             9999999873  221111111   112245799999999999999999999999988888898884          566


Q ss_pred             EEecC---CceEEcCCCeEEEEEEEEeeCCCe-eEEeeCCEEecCC
Q psy14060        239 FLTTI---SSAVINVGQLARFDAKISATKPLD-VYWLKVSSLSDVK  280 (283)
Q Consensus       239 ~~~~~---~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~l~~~  280 (283)
                      +...+   ....+.+|+.+.|.|.+.|.|.|. +.|+++|+.+...
T Consensus       313 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~  358 (524)
T 2ec8_A          313 INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK  358 (524)
T ss_dssp             EEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSS
T ss_pred             eEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCC
Confidence            65544   357899999999999999999998 9999999887654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.95  E-value=1.1e-26  Score=216.30  Aligned_cols=241  Identities=17%  Similarity=0.227  Sum_probs=185.4

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQE   98 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~   98 (283)
                      .+.|.|+|..|..+....|.|..++.....|.     ...+.+|+.++|.|.+.|.|... .|...+...  ..  ....
T Consensus       320 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~-----~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~--~~--~~~~  390 (816)
T 3dmk_A          320 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI--GH--SESV  390 (816)
T ss_dssp             EEEEEEECSSCEEEEEEEEEECEEEEEEEESS-----EEECCTTSCEEEEEEEEEECCCEEEEEETTEEC--SC--CSSE
T ss_pred             EEEEEEEcCCCceEEEEEEEEcCCCceeeCCC-----ceEecCCCCEEEEEEEeccCCCEEEEEECCEEC--CC--CCCE
Confidence            57899999999998888888876543222221     12366788999999999987433 444433211  11  2347


Q ss_pred             EEEccCCCCCCeEEEEEEEecceee-eeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEec
Q psy14060         99 RVVDASELDDDGYYAITERKYYALS-DLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI  174 (283)
Q Consensus        99 L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~  174 (283)
                      |.|.+++.+|+|.|+|.+.|..+.. ....+.+   ..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+
T Consensus       391 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l  470 (816)
T 3dmk_A          391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI  470 (816)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEEC
T ss_pred             EEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEEC
Confidence            9999999999999999999987732 2222222   45788877777788999999999999999999999999999998


Q ss_pred             CCCCCeEEEEe-----CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEc
Q psy14060        175 TSSPDFQIHTF-----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN  249 (283)
Q Consensus       175 ~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~  249 (283)
                      ....++.....     ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..          +|. ...+....+.
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~-~~~~~~~~v~  539 (816)
T 3dmk_A          471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG----------LPY-IRQMEKKAIV  539 (816)
T ss_dssp             CSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS----------SCE-ECCCCCEEEE
T ss_pred             CCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec----------CCe-eEccCCeEEe
Confidence            87666554321     1235799999999999999999999999988888888874          453 3445567889


Q ss_pred             CCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        250 VGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       250 ~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      .|+.+.|.|.+.+.|.+.+.|+++|+.+...
T Consensus       540 ~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~  570 (816)
T 3dmk_A          540 AGETLIVTCPVAGYPIDSIVWERDNRALPIN  570 (816)
T ss_dssp             TTCCEEEECCEECSSEEEEEEEETTEESCCS
T ss_pred             cCCeEEEEEEecCCCCCEEEEEECCeEcccC
Confidence            9999999999999998899999999988643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=1e-26  Score=198.84  Aligned_cols=241  Identities=14%  Similarity=0.115  Sum_probs=174.7

Q ss_pred             ceEEEEEcCCeeee-eeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-ccCccce-EEeec------------
Q psy14060         20 LKSRTASSDRSGVS-TEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-KGDKEIV-RKITA------------   84 (283)
Q Consensus        20 ~~~~~a~n~~g~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~~~i~-~~~~~------------   84 (283)
                      .+.|.|.|..|... ....|.|...+.    |.+... ...+.+|+.+.|.|.+ .|.|... .|...            
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~~~~----p~~~~~-~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  150 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVISFRKTYLIA----SPAKTH-EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD  150 (395)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEEEC----CCCEEE-EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCC
T ss_pred             EEEEEEEeCCCeEEeEEEEEEEEEeec----CCcCCc-ceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccc
Confidence            57899999999875 335555554322    222211 2236678899999996 6766332 33322            


Q ss_pred             -CCCEEEEEcCCEEEEEEccCCCCCCe---EEEEEEEecceeeee-------eccCC-------CCCCeEEecCCceeec
Q psy14060         85 -TETTEMEHKGKIQERVVDASELDDDG---YYAITERKYYALSDL-------SEQKP-------AKPPVFTKKIQPCRAF  146 (283)
Q Consensus        85 -~~~~~~~~~~~~~~L~i~~~~~~D~G---~Y~C~a~n~~~~~~~-------~~~~~-------~~~p~~~~~~~~~~~~  146 (283)
                       ..++.....   ..|.|.+++.+|+|   .|+|.+.|..+....       ..+..       ..+|.+  .+....+.
T Consensus       151 ~~~~~~~~~~---~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~  225 (395)
T 1bih_A          151 FDRRITAGPD---GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAK  225 (395)
T ss_dssp             CCTTEEECTT---SCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEE
T ss_pred             ccccEEEcCC---CcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEE
Confidence             334444322   36899999999999   999999998774211       11111       112333  34667889


Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EEEEEE
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVV  223 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v  223 (283)
                      .|+.+.|.|.+.|.|.+.+.|++++..+......++..  ......|.|.++..+|+|.|+|.+.|..|.... .+.|.|
T Consensus       226 ~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  305 (395)
T 1bih_A          226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV  305 (395)
T ss_dssp             TTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             CCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEE
Confidence            99999999999999999999999999886543322221  122337999999999999999999999988655 788888


Q ss_pred             EeccCCCCCCCCCCeEEecCCc-eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        224 EEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       224 ~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ..          +|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++||+.+...
T Consensus       306 ~~----------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  353 (395)
T 1bih_A          306 VS----------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG  353 (395)
T ss_dssp             EE----------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS
T ss_pred             Ec----------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC
Confidence            85          6788877776 78999999999999999999999999999988643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.95  E-value=5.7e-26  Score=185.75  Aligned_cols=201  Identities=17%  Similarity=0.240  Sum_probs=164.3

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-------EEeecCCCEEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEH   92 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~   92 (283)
                      .+.|.|+|..|..+....|.|..++.....+.    ....+..|+.+.|.|.+.|.|...       ..+....++.+..
T Consensus        75 ~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~----~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  150 (284)
T 2rik_A           75 QYTCYASNVAGKDSCSAQLGVQEPPRFIKKLE----PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF  150 (284)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCEEEECCC----SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEE
T ss_pred             EEEEEEEECCceEEEEEEEEccCCCcccccCC----CceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEE
Confidence            57899999999999999999988654221111    111366788999999999988433       3444455666666


Q ss_pred             cCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC
Q psy14060         93 KGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED  171 (283)
Q Consensus        93 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~  171 (283)
                      ......|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++
T Consensus       151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~  230 (284)
T 2rik_A          151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK  230 (284)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred             cCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence            667889999999999999999999998873 3344556667888777777788999999999999999999999999999


Q ss_pred             EecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        172 FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      ..+....++.+...+....|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            99988888888887778899999999999999999999999999888888775

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=191.42  Aligned_cols=217  Identities=15%  Similarity=0.162  Sum_probs=158.3

Q ss_pred             eeecCcEEEEEEEc-cCc--cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCC
Q psy14060         60 IHTAKSQQVQKEKK-GDK--EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPA  131 (283)
Q Consensus        60 v~~g~~v~l~C~~~-g~~--~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~  131 (283)
                      +.+|+.+.|.|.+. |.|  .+.     ..+....++.+...+....|.|.+++.+|+|.|+|.+.|..+......+.+.
T Consensus        13 v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~   92 (312)
T 2y23_A           13 VDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE   92 (312)
T ss_dssp             ECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHH
T ss_pred             EecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEe
Confidence            55677888888886 345  333     4555567888888888899999999999999999999998774333333332


Q ss_pred             C------------CCeEEecC-CceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEe--CCEEEEEEcC
Q psy14060        132 K------------PPVFTKKI-QPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       132 ~------------~p~~~~~~-~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .            +|.+.... ....+..|+.+.|.|.+. +.|.+.+.|++++..+....++.+...  .....|.|.+
T Consensus        93 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~  172 (312)
T 2y23_A           93 ELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK  172 (312)
T ss_dssp             HHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESC
T ss_pred             eeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEcc
Confidence            1            44444333 367889999999999998 889999999999999988777666654  4567799999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEecc--------CC---CCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKR--------QG---GRGGVVPPSFLTTISSAVINVGQLARFDAKISATK  264 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--------~~---~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p  264 (283)
                      +..+|+|.|+|.+.+..+.....  +.+....        ..   ......+|.|..... ..+.+|+.+.|.|.+.+.|
T Consensus       173 ~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p  249 (312)
T 2y23_A          173 LQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIK  249 (312)
T ss_dssp             CCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEEEEEESCC
T ss_pred             CCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEEEEEcCCC
Confidence            99999999999998754443333  3221000        00   000002466654433 6789999999999999999


Q ss_pred             CC-eeEEeeCCEEecC
Q psy14060        265 PL-DVYWLKVSSLSDV  279 (283)
Q Consensus       265 ~~-~v~W~~~g~~l~~  279 (283)
                      .| .+.|++||+.+..
T Consensus       250 ~~~~v~W~~~g~~~~~  265 (312)
T 2y23_A          250 KETHIVWYKDEREISV  265 (312)
T ss_dssp             SSCEEEEEETTEEEEE
T ss_pred             CCCEEEEeeCCEECCC
Confidence            88 9999999999873

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.95  E-value=1.8e-26  Score=196.99  Aligned_cols=239  Identities=14%  Similarity=0.142  Sum_probs=172.0

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCcc---ce-EEeecC---------
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKE---IV-RKITAT---------   85 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~---i~-~~~~~~---------   85 (283)
                      .+.|.|+|..|.. +....+.+...+.....+.     ...+.+|+.++|.|.+.+.+.   .. .|....         
T Consensus        79 ~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~-----~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~  153 (388)
T 2v5m_A           79 VYACLARNQFGSIISRDVHVRAVVAQYYEADVN-----KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE  153 (388)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECCCCCCCBCC-----CEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSC
T ss_pred             eEEEEEEccCCeEEecceEEEEccccccccCcc-----ceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccC
Confidence            5789999999985 5667777776554332221     124778889999999988641   22 333322         


Q ss_pred             --CCEEEEEcCCEEEEEEccCCCCCC-eEEEEEEEecceee-ee----eccCCCCC-----CeEE-ecCCceeecCCCcE
Q psy14060         86 --ETTEMEHKGKIQERVVDASELDDD-GYYAITERKYYALS-DL----SEQKPAKP-----PVFT-KKIQPCRAFEQDQA  151 (283)
Q Consensus        86 --~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~n~~~~~-~~----~~~~~~~~-----p~~~-~~~~~~~~~~g~~v  151 (283)
                        .++.+..   ...|.|.+++.+|+ |.|+|.+.|..+.. ..    ..+.+..+     |.+. .......+..|+.+
T Consensus       154 ~~~~~~~~~---~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v  230 (388)
T 2v5m_A          154 YDGKYLVLP---SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI  230 (388)
T ss_dssp             BTTTEEECT---TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCE
T ss_pred             CCCcEEEcc---CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcE
Confidence              2333321   24699999999999 99999999875421 11    11222222     1111 12234567889999


Q ss_pred             EEEEEEeeecCCEEEEEeCCEec------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        152 RFEVEFDGDPLPTIKWFREDFPI------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       152 ~l~C~~~g~p~~~~~W~k~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.|.+.|.|.+.+.|++++..+      ....++.  ..  ...|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       231 ~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  306 (388)
T 2v5m_A          231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK--QV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA  306 (388)
T ss_dssp             EECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE--EE--TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEecCCCCcccccccccCcee--cc--cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeC
Confidence            99999999999999999975332      1222222  11  23699999999999999999999999988888888885


Q ss_pred             ccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        226 KRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       226 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                                +|.+...+....+.+|+.+.|.|.+.|.|.|.|.|++||+.+...
T Consensus       307 ----------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~  351 (388)
T 2v5m_A          307 ----------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS  351 (388)
T ss_dssp             ----------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC
T ss_pred             ----------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC
Confidence                      567777777888999999999999999999999999999998653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.95  E-value=8.8e-27  Score=217.04  Aligned_cols=239  Identities=16%  Similarity=0.152  Sum_probs=182.6

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-E------EeecCCCEEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-R------KITATETTEMEH   92 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~   92 (283)
                      .+.|.|+|..|..+....|.|...+.....      ....+..|+.+.|.|.+.|.|... .      .+....+..+. 
T Consensus       504 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~------~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~-  576 (816)
T 3dmk_A          504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQM------EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF-  576 (816)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECSSCEECCC------CCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEEC-
T ss_pred             EEEEEEEECCCeEEEEEEEEEecCCeeEcc------CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEe-
Confidence            378999999999999999999876532222      222467788999999999988322 2      33333344433 


Q ss_pred             cCCEEEEEEccCC-CCCCeEEEEEEEecceee--eeeccCCCCCCeEEe-cCCceeecCCCcEEEEEEEeeecCC-EEEE
Q psy14060         93 KGKIQERVVDASE-LDDDGYYAITERKYYALS--DLSEQKPAKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLP-TIKW  167 (283)
Q Consensus        93 ~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~~--~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W  167 (283)
                        ....|.|.++. .+|+|.|+|.+.|..+..  ....+.+..+|.+.. ......+..|+.+.|.|.+.+.+.+ .+.|
T Consensus       577 --~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W  654 (816)
T 3dmk_A          577 --PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDW  654 (816)
T ss_dssp             --TTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEE
T ss_pred             --cCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEE
Confidence              22368999998 589999999999998732  223333334444332 2344568889999999999866654 9999


Q ss_pred             EeCCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCce
Q psy14060        168 FREDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA  246 (283)
Q Consensus       168 ~k~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~  246 (283)
                      ++++..+.....+.... ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..          +|.+...+...
T Consensus       655 ~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~----------~P~~~~~~~~~  724 (816)
T 3dmk_A          655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV----------PPRWILEPTDK  724 (816)
T ss_dssp             EETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE----------EEEEEECCCCE
T ss_pred             EECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe----------CCceeeecccc
Confidence            99999886554444433 34567899999999999999999999999998889998885          78888888888


Q ss_pred             EEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        247 VINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       247 ~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      .+..|+.+.|.|.+.|.|.|.|+|+++|..+
T Consensus       725 ~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~  755 (816)
T 3dmk_A          725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDT  755 (816)
T ss_dssp             EEETTCCEEEECEEEEESCCEEECCEECSSS
T ss_pred             eecCCCcEEEEEEEecCCCCeEEEEecCCCC
Confidence            9999999999999999999999999987543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=204.45  Aligned_cols=240  Identities=10%  Similarity=-0.023  Sum_probs=158.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEE--EEcCCE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEM--EHKGKI   96 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~--~~~~~~   96 (283)
                      .+.|.|.|..|..+..+.+.|......  .+.-+.    ....++.+.|.|.+.|.|... .|.........  ......
T Consensus       117 ~Y~C~~~n~~~~~~~~~~v~v~~~~~~--~~~~p~----~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~  190 (527)
T 3qs9_E          117 EYLLFIQSEATNYTILFTVSIRNTLLY--TLRRPY----FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV  190 (527)
T ss_dssp             EEEEEEEC--CEEEEEEEEEEC-------CEEEEE----EEECSSSSCEEEEEEESSCCEEEEEEC-------------C
T ss_pred             eEEEEEEeccccEEEEEEEEECCceee--ccCCCc----EEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcE
Confidence            356788999888888777777632211  111111    123455788999999999443 44432221110  011111


Q ss_pred             EEEEEccCCCCCCeEEEEEEEecceeee--eeccCCCCCCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEe
Q psy14060         97 QERVVDASELDDDGYYAITERKYYALSD--LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFP  173 (283)
Q Consensus        97 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~  173 (283)
                      .......+..+|+|.|+|.|.|..+...  ...+.+..+|.+  .+....+..|+.+.|.|.+. +.|.+.++|++++..
T Consensus       191 ~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~  268 (527)
T 3qs9_E          191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA  268 (527)
T ss_dssp             EEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC
T ss_pred             EEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE
Confidence            2223334568999999999999988433  234555555554  45677889999999999997 889999999999987


Q ss_pred             cCCCCCeEEEE-e-----CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecC--Cc
Q psy14060        174 ITSSPDFQIHT-F-----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI--SS  245 (283)
Q Consensus       174 ~~~~~~~~~~~-~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~--~~  245 (283)
                      +.....+.... .     ....+|.|.++..+|+|.|+|.|.|.   ....+.|.|..          +|.+...+  ..
T Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~----------~p~i~~~~~~~~  335 (527)
T 3qs9_E          269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE----------KGFINATNSSED  335 (527)
T ss_dssp             CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC------------CEEECCCSCCE
T ss_pred             CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc----------cCccccccCccc
Confidence            76543322211 1     12346999999999999999999887   55567777764          45554433  23


Q ss_pred             eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        246 AVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       246 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ..+.+|+.+.|.|.+.|.|.|.|.|++||+.+...
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~  370 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             EEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            56789999999999999999999999999998654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.95  E-value=2.3e-25  Score=202.34  Aligned_cols=238  Identities=13%  Similarity=0.097  Sum_probs=171.8

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEE
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQ   97 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~   97 (283)
                      .+.|.|+|..|.. +....|.|...+..   |.+.. ....+.+|+.+.|.|.+.|.|... .|...+...  .   ...
T Consensus       178 ~Y~C~a~n~~~~~~s~~~~l~V~~~p~~---~~~~~-~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i--~---~~~  248 (642)
T 1e07_A          178 SYKCETQNPVSARRSDSVILNVLYGPDA---PTISP-LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ--Q---STQ  248 (642)
T ss_pred             eEEEEEecCCCCcccceEEEEEEeCCCC---cEEec-CCcccccCCEEEEEEEcCCCCCcEEEEEECCeEc--c---cCC
Confidence            4689999988864 56678888865431   11111 122477889999999999888443 555443322  1   345


Q ss_pred             EEEEccCCCCCCeEEEEEEEecceee---eeeccCCCC---CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC
Q psy14060         98 ERVVDASELDDDGYYAITERKYYALS---DLSEQKPAK---PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED  171 (283)
Q Consensus        98 ~L~i~~~~~~D~G~Y~C~a~n~~~~~---~~~~~~~~~---~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~  171 (283)
                      .|.|.+++.+|+|.|+|.+.|..+..   ....+.+..   +|.+. ......+..|+.+.|.|.+.+.| +.+.|++++
T Consensus       249 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g  326 (642)
T 1e07_A          249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNN  326 (642)
T ss_pred             ceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEEEEECCCCC-ccEEEEECC
Confidence            79999999999999999999987632   122233322   23332 33334555678899999999865 799999999


Q ss_pred             EecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcC
Q psy14060        172 FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV  250 (283)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~  250 (283)
                      ..+....++.+...  ...|.|.++..+|+|.|+|.+.|..|... ..+.|.|...         |+.+...+....+.+
T Consensus       327 ~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~---------p~~~~~~~~~~~~~~  395 (642)
T 1e07_A          327 QSLPVSPRLQLSND--NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG---------PDDPTISPSYTYYRP  395 (642)
T ss_pred             ccCCCcCCEEEeCC--CCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcC---------CCCCeecCCceEecC
Confidence            98876666555432  35799999999999999999999988643 4577777752         333344456678899


Q ss_pred             CCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        251 GQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       251 g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      |+.+.|.|.+.|.|.|.+.|++||+.+..
T Consensus       396 g~~~~l~C~~~g~p~~~i~W~~~g~~~~~  424 (642)
T 1e07_A          396 GVNLSLSCHAASNPPAQYSWLIDGNIQQH  424 (642)
T ss_pred             CCcEEEEEEcCccCCCeEEEEECCEEcCC
Confidence            99999999999999999999999998754

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.94  E-value=1.2e-25  Score=201.84  Aligned_cols=239  Identities=8%  Similarity=0.050  Sum_probs=175.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-c-ce-EEe-ec-----------
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-E-IV-RKI-TA-----------   84 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~-i~-~~~-~~-----------   84 (283)
                      .+.|.|.|..|..+....|.|...+     |...     .+.+|+.+.|.|.+.+.+ . +. .|. ..           
T Consensus       199 ~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~-----~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~  268 (585)
T 2ocw_A          199 QYLCQAGDDSNSNKKNADLQVLKPE-----PELV-----YEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTL  268 (585)
T ss_pred             EEEEEeccCCccccceEEEEEccCC-----Ccee-----EEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCC
Confidence            3679999999998888889887643     2211     256788999999974333 2 32 221 11           


Q ss_pred             -------CCCEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEecceee-----eeeccCCCCCCeEEecCCceeecCCCc
Q psy14060         85 -------TETTEMEHK--GKIQERVVDASELDDDGYYAITERKYYALS-----DLSEQKPAKPPVFTKKIQPCRAFEQDQ  150 (283)
Q Consensus        85 -------~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~g~~  150 (283)
                             ..++.+...  .+...|.|.+++.+|+|.|+|.+.|.....     ....+.+..+|.+...+....+..|+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~  348 (585)
T 2ocw_A          269 GKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS  348 (585)
T ss_pred             CcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCc
Confidence                   223333321  344589999999999999999999964433     444566667787777778888999999


Q ss_pred             EEEEEEEeeecCCEE----EEEe--CCE--ecCC---------CCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        151 ARFEVEFDGDPLPTI----KWFR--EDF--PITS---------SPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       151 v~l~C~~~g~p~~~~----~W~k--~~~--~~~~---------~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +.|.|.+.+.|.+.+    .|++  ++.  .+..         ..++.+..  .....+|.|.++..+|+|.|+|.| |.
T Consensus       349 v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~  427 (585)
T 2ocw_A          349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NG  427 (585)
T ss_pred             EEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cC
Confidence            999999999998876    7999  776  4322         22344432  223346999999999999999999 88


Q ss_pred             CceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE----eeCCCeeEEeeCCEEecC
Q psy14060        212 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS----ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~----g~p~~~v~W~~~g~~l~~  279 (283)
                      .|.....+.|.|..         .+|.+. .+....+.+|+.+.|.|.+.    +.|.|.|.|++||..+..
T Consensus       428 ~g~~~~~~~l~V~~---------~~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~  489 (585)
T 2ocw_A          428 DTLWRTTVEIKIIE---------GEPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALP  489 (585)
T ss_pred             CCccceeEEEEEec---------Cccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeee
Confidence            88888888888875         244443 36677899999999999997    677889999999987743

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.94  E-value=2.3e-25  Score=197.63  Aligned_cols=246  Identities=8%  Similarity=0.047  Sum_probs=161.6

Q ss_pred             eEEEEEcCCee---eeeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEccCcc--ce-EEeecCCCEEE---
Q psy14060         21 KSRTASSDRSG---VSTEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKGDKE--IV-RKITATETTEM---   90 (283)
Q Consensus        21 ~~~~a~n~~g~---~~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~--i~-~~~~~~~~~~~---   90 (283)
                      +.|.|.|..|.   ......|.|...+.  ..|.+..... ..+..|+.+.|.|.+.|.+.  +. .|...+.....   
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~--~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLGQPK--ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE  162 (523)
T ss_pred             EEEEEccCCCccccccCceEEEeccCCC--cCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceE
Confidence            57889988764   23445677754322  2333332222 22456889999999998762  22 44433221110   


Q ss_pred             -----EEcCC----EEEEEEccCCCCCCeEEEEEEEecceeeeee-c----cCCCCCCeEEecCCceeecCCCcEEEEEE
Q psy14060         91 -----EHKGK----IQERVVDASELDDDGYYAITERKYYALSDLS-E----QKPAKPPVFTKKIQPCRAFEQDQARFEVE  156 (283)
Q Consensus        91 -----~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~-~----~~~~~~p~~~~~~~~~~~~~g~~v~l~C~  156 (283)
                           ....+    ...|.|.++..+|+|.|+|.+.|..+..... .    ..+..+|.+........+..|+.+.|.|.
T Consensus       163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~  242 (523)
T 2rcj_C          163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCL  242 (523)
T ss_pred             eccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEE
Confidence                 01111    2369999999999999999999987632211 1    12334565554444455688999999999


Q ss_pred             Eeee-cCC-EEEEEeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCC
Q psy14060        157 FDGD-PLP-TIKWFREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGG  230 (283)
Q Consensus       157 ~~g~-p~~-~~~W~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  230 (283)
                      +.|. |.| .+.|++++..+.......+...+.    .+.|.|.++..+| |.|+|.|.|..|.......+.+..     
T Consensus       243 ~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~-----  316 (523)
T 2rcj_C          243 VKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS-----  316 (523)
T ss_pred             EeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc-----
Confidence            9886 777 899999998754211111111111    3479999999999 999999999999877666666543     


Q ss_pred             CCCCCCCeE-EecCCceE-EcCCCeEEEEEEEEeeCC----CeeEEeeCCEEecC
Q psy14060        231 RGGVVPPSF-LTTISSAV-INVGQLARFDAKISATKP----LDVYWLKVSSLSDV  279 (283)
Q Consensus       231 ~~~~~~p~~-~~~~~~~~-v~~g~~v~L~C~~~g~p~----~~v~W~~~g~~l~~  279 (283)
                           .|.+ +..+.... +.+|+.+.|.|.+.|.|+    +.|+|+|||+.+..
T Consensus       317 -----~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~  366 (523)
T 2rcj_C          317 -----LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHN  366 (523)
T ss_pred             -----CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccC
Confidence                 3443 43444343 789999999999998654    48999999998754

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.94  E-value=4.9e-26  Score=186.54  Aligned_cols=209  Identities=12%  Similarity=0.101  Sum_probs=153.1

Q ss_pred             eeeecCcEEEEEEEccCccceEEee-cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCe-
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKIT-ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPV-  135 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~-  135 (283)
                      .+.+|+.++|.|.+.+.  + .|.. ...............|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|. 
T Consensus        15 ~v~~G~~v~L~C~~~~~--v-~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~   91 (289)
T 3ejj_X           15 VVEPGETVTLRCVSNGS--V-EWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS   91 (289)
T ss_dssp             EECTTCCEEEEEECSSC--C-EEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCS
T ss_pred             EECCCCCEEEEEEeCCc--E-EEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcc
Confidence            36678899999999884  3 2332 222223333445678999999999999999998877663 3333444444444 


Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCE-EEEEe-CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe-CC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN-RG  212 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-~~  212 (283)
                      +...+....+..|+.+.|.|.+.+.+.+. +.|++ ++..+....++.+...   ..|.|.++..+|.|.|+|.+.| ..
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~  168 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGR  168 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCC
Confidence            56666778899999999999999876665 99986 6666665555544322   3599999999999999999994 44


Q ss_pred             ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060        213 GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       213 g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~l~~  279 (283)
                      +.....+.|.|....      ..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+..
T Consensus       169 ~~~~~~~~l~V~~~~------~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~  230 (289)
T 3ejj_X          169 ESTSTGIWLKVNRVH------PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI  230 (289)
T ss_dssp             EEECCCEEEEEESSC------CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCC
T ss_pred             ccccccEEEEEEECC------CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeec
Confidence            455556777777421      13688888888888889999999999998 78899999999998864

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=4.2e-26  Score=193.29  Aligned_cols=216  Identities=11%  Similarity=0.023  Sum_probs=158.2

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQE   98 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~   98 (283)
                      .+.|.|.|..+    ...|.|....   ..|      ...+.+|+.+.|.|.+.+.|... .|...+.+...    ....
T Consensus        81 ~Y~C~~~n~~~----~~~l~V~~~~---~~~------~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~  143 (363)
T 1wio_A           81 TYICEVEDQKE----EVQLLVFGLT---ANS------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----GGKT  143 (363)
T ss_dssp             EEEEEETTEEE----EEEEEEEEEE---ESS------CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE----ESSE
T ss_pred             EEEEEEEECCC----cEEEEEEeCC---CCC------ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc----cceE
Confidence            36777887754    4555555411   111      22478899999999999887433 66665555432    3457


Q ss_pred             EEEccCCCCCCeEEEEEEEecceee-eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-----ecCCEEEEEeCCE
Q psy14060         99 RVVDASELDDDGYYAITERKYYALS-DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-----DPLPTIKWFREDF  172 (283)
Q Consensus        99 L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~~~W~k~~~  172 (283)
                      |.|.+++.+|+|.|+|.+.|..+.. ....+.+..+|...   ....+.+|+.+.|.|.+.+     .|.|.+.|++++.
T Consensus       144 L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~  220 (363)
T 1wio_A          144 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA  220 (363)
T ss_dssp             EEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred             EEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence            9999999999999999999886632 22233333344322   4567888999999998877     7889999999998


Q ss_pred             ecCC--------CCCeEEEE----------eCCEEEEEEcCCCCCCCEEEEEEEEeC--CceeEEEEEEEEEeccCCCCC
Q psy14060        173 PITS--------SPDFQIHT----------FSTKSILIMRQVFMEDSGVFAVIAENR--GGKAKCSANLVVEEKRQGGRG  232 (283)
Q Consensus       173 ~~~~--------~~~~~~~~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~~~~~~  232 (283)
                      .+..        ..++.+..          ......|.|.++..+|+|.|+|.|.|.  .|.....+.|.|...      
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v------  294 (363)
T 1wio_A          221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------  294 (363)
T ss_dssp             CCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE------
T ss_pred             CccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe------
Confidence            8765        34444432          222447999999999999999999999  898887788877631      


Q ss_pred             CCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCe--eEEeeCCEEec
Q psy14060        233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLD--VYWLKVSSLSD  278 (283)
Q Consensus       233 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~--v~W~~~g~~l~  278 (283)
                                       .|+.+.|.|.+.|.|.|.  +.|+++|+.+.
T Consensus       295 -----------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~  325 (363)
T 1wio_A          295 -----------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAK  325 (363)
T ss_dssp             -----------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCS
T ss_pred             -----------------cCCCeeEEEEEccccCCCccEEEEeCCCcee
Confidence                             188899999999999887  99999998765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.94  E-value=4.9e-25  Score=195.50  Aligned_cols=214  Identities=10%  Similarity=0.075  Sum_probs=151.0

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.++|.|.+.|.+... .|...                    ..++.....+....|.|.+++.+|+|.|+|.+.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (523)
T 2rcj_C           11 SGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASW   90 (523)
T ss_pred             EEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEc
Confidence            477889999999998876322 33221                    235554445567899999999999999999999


Q ss_pred             eccee----eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEE--E-E
Q psy14060        118 KYYAL----SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQI--H-T  184 (283)
Q Consensus       118 n~~~~----~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~--~-~  184 (283)
                      |..+.    .....+.+    ..+|.+...+....+..|+.+.|.|.+.|.|++  .+.|+|++..+........  . .
T Consensus        91 n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  170 (523)
T 2rcj_C           91 NSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQS  170 (523)
T ss_pred             cCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccC
Confidence            87541    11223333    356776666666667789999999999987654  8999999988765322111  1 1


Q ss_pred             eCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE
Q psy14060        185 FST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS  261 (283)
Q Consensus       185 ~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~  261 (283)
                      .+.   .+.|.|.++..+|.|.|+|.|.|..+.......+.+...      ...+|.+........+.+|+.+.|.|.+.
T Consensus       171 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~------~~~~P~v~~~~~~~~~~~G~~~~l~C~~~  244 (523)
T 2rcj_C          171 NNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA------STKGPSVFPLAPSSKSTSGGTAALGCLVK  244 (523)
T ss_pred             CCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC------CCcCCEEEecCCCcccccCCceEEEEEEe
Confidence            111   236999999999999999999999887655554432210      01356665444445678999999999998


Q ss_pred             ee-CCC-eeEEeeCCEEec
Q psy14060        262 AT-KPL-DVYWLKVSSLSD  278 (283)
Q Consensus       262 g~-p~~-~v~W~~~g~~l~  278 (283)
                      |. |.| .|+|+++|..+.
T Consensus       245 g~~P~p~~v~W~k~g~~~~  263 (523)
T 2rcj_C          245 DYFPQPVTVSWNSGALTSG  263 (523)
T ss_pred             ceeCCCeEEEEecCCcccc
Confidence            86 777 899999998754

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.7e-26  Score=185.36  Aligned_cols=201  Identities=14%  Similarity=0.110  Sum_probs=150.2

Q ss_pred             eeeecCcEEEEEEEccCccceEEeecCCCE-EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKITATETT-EMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFT  137 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~  137 (283)
                      .+.+|+.++|.|.+.|  .+ .|...+... .....+  ..|.|.+++.+|+|.|+|.+.|  +......+.+..+|.+.
T Consensus        23 ~v~~G~~v~l~C~~~~--~i-~W~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~n--g~~~~~~l~V~~~~~~~   95 (290)
T 2o26_X           23 IVEAGDTLSLTCIDPD--FV-RWTFKTYFNEMVENKK--NEWIQEKAEATRTGTYTCSNSN--GLTSSIYVFVRDPAKLF   95 (290)
T ss_dssp             EEETTSCEEEEEECTT--EE-EEEEECSSSCEEEECS--SEEEETTCCGGGCEEEEEEESS--SCEEEEEEEEECSSCCB
T ss_pred             EEcCCCcEEEEECCCC--cE-EEecCCcceeeecCCC--ceEEEeccCHHhCeEEEEEeeC--CccEEEEEEEeCCCccc
Confidence            3677889999999998  44 344333322 122222  7899999999999999999998  43434444444555544


Q ss_pred             ecCCceeecCCCcEEEEEEEeeecC-CEEEEE-eCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEeCCce
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPL-PTIKWF-REDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAENRGGK  214 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~-k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~  214 (283)
                      ..+....+..|+.+.|.|.+.+ |. +.+.|+ +++..+....++.+...   ..|.|.++..+|.| .|+|.+.|..+.
T Consensus        96 ~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~  171 (290)
T 2o26_X           96 LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTW  171 (290)
T ss_dssp             CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEE
T ss_pred             ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCce
Confidence            5666778889999999999986 87 899994 67877765444333222   36999999999999 999999998665


Q ss_pred             eEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCe-eEEeeCCEE
Q psy14060        215 AKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD-VYWLKVSSL  276 (283)
Q Consensus       215 ~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~  276 (283)
                      ... .+.|.|....      ..+|.+...+....+.+|+.+.|.|.+.|.|.|. +.|+++|..
T Consensus       172 ~~s~~~~l~V~~~~------~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          172 LHSDKFTLKVREAI------KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             EECCCEEEEEECCC------CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSS
T ss_pred             EEeEEEEEEEEeCC------CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCC
Confidence            433 4677776311      1478887777777899999999999999999996 999999876

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=1.6e-25  Score=188.61  Aligned_cols=211  Identities=12%  Similarity=0.109  Sum_probs=132.2

Q ss_pred             eeeecCcEEEEEEEccCcc-----------ce-EEeecC-------------CCEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-----------IV-RKITAT-------------ETTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-----------i~-~~~~~~-------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|+.+.|.|.+.|.|.           .. .|....             ...++...+  ..|.|.+++.+|+|.|+
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~   95 (349)
T 4dep_C           18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK--DVLWFRPTLLNDTGNYT   95 (349)
T ss_dssp             EEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET--TEEEESSCCGGGCEEEE
T ss_pred             EEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC--CEEEEccCChhhCEEEE
Confidence            4778899999999997542           22 333221             111121222  37999999999999999


Q ss_pred             EEEEecceee-eeeccCCCCCCeEE----ecCCceeecCCCcEEEEEEE-----eeecCCEEEEEeCCEecCCCCCeEEE
Q psy14060        114 ITERKYYALS-DLSEQKPAKPPVFT----KKIQPCRAFEQDQARFEVEF-----DGDPLPTIKWFREDFPITSSPDFQIH  183 (283)
Q Consensus       114 C~a~n~~~~~-~~~~~~~~~~p~~~----~~~~~~~~~~g~~v~l~C~~-----~g~p~~~~~W~k~~~~~~~~~~~~~~  183 (283)
                      |.+.|..+.. ....+.+..++...    ..+....+..|+.+.|.|.+     .+.|.+.+.|+|++..+.....  +.
T Consensus        96 C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~--~~  173 (349)
T 4dep_C           96 CMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN--VI  173 (349)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS--EE
T ss_pred             EEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc--ee
Confidence            9999987632 22223332222211    12334577889999999985     6778999999999998865433  22


Q ss_pred             EeCCEEEEEEcCCCCCCCEEEEEEEEeCC-cee---EEEEEEEEEeccCCCCCCCCCCeEEecCCce--EEcCCCeEEEE
Q psy14060        184 TFSTKSILIMRQVFMEDSGVFAVIAENRG-GKA---KCSANLVVEEKRQGGRGGVVPPSFLTTISSA--VINVGQLARFD  257 (283)
Q Consensus       184 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~--~v~~g~~v~L~  257 (283)
                      ..+  ..|.|.++..+|+|.|+|.+.|.. |..   .....|.|.....    ...+|.+.......  .+..|+.+.|.
T Consensus       174 ~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~----~~~~p~i~~~~~~~~~~v~~G~~v~l~  247 (349)
T 4dep_C          174 PEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK----NAVPPVIHSPNDHVVYEKEPGEELLIP  247 (349)
T ss_dssp             EET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGG----GCCSCEEC----------------CCC
T ss_pred             ecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCC----CCCCCeEecCCCceeEEEecCCcEEEE
Confidence            222  469999999999999999999986 443   4455666654210    00156665554433  78899999999


Q ss_pred             EEEE----eeCCCeeEEeeCCEEecC
Q psy14060        258 AKIS----ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       258 C~~~----g~p~~~v~W~~~g~~l~~  279 (283)
                      |.+.    |.|.|.+.|++||+.+..
T Consensus       248 C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          248 CTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             EEEEECCCTTCCCEEEEESSCC----
T ss_pred             EEEEEccCCCCCCEEEEEECCEEccc
Confidence            9999    468889999999988765

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=7.8e-24  Score=190.15  Aligned_cols=234  Identities=10%  Similarity=0.091  Sum_probs=165.3

Q ss_pred             eEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-cc-eEEeec--------------
Q psy14060         21 KSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-EI-VRKITA--------------   84 (283)
Q Consensus        21 ~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i-~~~~~~--------------   84 (283)
                      +.|.|.|..|..+....|.|..++.....|..     ..+.+|+.++|.|.+.+.+ .. ..|...              
T Consensus        90 Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~-----~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~  164 (585)
T 2ocw_A           90 YKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV-----YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY  164 (585)
T ss_pred             EEEEcccCCCCceEEEEEEEecCccccCCCcc-----EEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence            67889999988888899999887665433322     1367788999999999654 22 133322              


Q ss_pred             -----CCCEEEEEcC---CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEE
Q psy14060         85 -----TETTEMEHKG---KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEV  155 (283)
Q Consensus        85 -----~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C  155 (283)
                           ..++.+...+   +...|.|.+++.+|+|.|+|.+.|..+. .....+.+..++     +....+..|+.+.|.|
T Consensus       165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C  239 (585)
T 2ocw_A          165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGSVTFHC  239 (585)
T ss_pred             cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-----CceeEEcCCCcEEEEE
Confidence                 2344444322   2458999999999999999999988773 223333333322     2335677899999999


Q ss_pred             EEeeecC---CEEEEE-eCCEe----cC--------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeCCceeE-
Q psy14060        156 EFDGDPL---PTIKWF-REDFP----IT--------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENRGGKAK-  216 (283)
Q Consensus       156 ~~~g~p~---~~~~W~-k~~~~----~~--------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-  216 (283)
                      .+ +.+.   +.+.|+ +++..    +.        ...++.+...  .....|.|.++..+|+|.|+|.|.|..+... 
T Consensus       240 ~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~  318 (585)
T 2ocw_A          240 AL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEG  318 (585)
T ss_pred             Ec-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCcccc
Confidence            97 4344   678896 88732    11        1223333322  2334799999999999999999999643331 


Q ss_pred             ---EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCee----EEee--CCE
Q psy14060        217 ---CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDV----YWLK--VSS  275 (283)
Q Consensus       217 ---~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v----~W~~--~g~  275 (283)
                         ..+.|.|..          +|.+...+....+.+|+.+.|.|.+.+.|.|.+    .|++  ||.
T Consensus       319 ~~~~~~~l~V~~----------~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~  376 (585)
T 2ocw_A          319 SPIQAWQLFVNE----------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGR  376 (585)
T ss_pred             CceeeEEEEEec----------ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCC
Confidence               667787774          667777777788999999999999999999876    7999  887

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.93  E-value=3.5e-23  Score=176.61  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=157.9

Q ss_pred             CceeeecCCeeeecCcEEEEEEEccCccce-EEeec-------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-------------TETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      |.+.......+.+|+.+.|.|.+.|.|... .|...             ..++.+........|.|.+++.+|+|.|+|.
T Consensus         2 P~i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   81 (389)
T 2jll_A            2 PHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE   81 (389)
T ss_dssp             CEEEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred             CeEEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEE
Confidence            344443334577789999999999998332 44433             4566666556788999999999999999999


Q ss_pred             EEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEE
Q psy14060        116 ERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILI  192 (283)
Q Consensus       116 a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~  192 (283)
                      |.|..+. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....  ++.+...+....|.
T Consensus        82 a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~  161 (389)
T 2jll_A           82 AASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE  161 (389)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEE
T ss_pred             EEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEE
Confidence            9998874 34445666667777666555578899999999999999999999999999987643  56666666677899


Q ss_pred             EcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe----eCCC--
Q psy14060        193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA----TKPL--  266 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g----~p~~--  266 (283)
                      |.++..+|.|.|+|.|.|..|.......+.+....       .+|....    .....+..+.|.|....    .|..  
T Consensus       162 i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P-------~~P~~~~----~~~~~~~~~~l~w~~p~~~~g~pi~~y  230 (389)
T 2jll_A          162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP-------SSPYGVK----IIELSQTTAKVSFNKPDSHGGVPIHHY  230 (389)
T ss_dssp             ECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC-------CCCEEEE----EEEECSSCEEEEEECCSCCTTSCEEEE
T ss_pred             ECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC-------CCCcceE----EeeccCCEEEEEEeCCCCCCCcceEEE
Confidence            99999999999999999999998877777765321       2332111    12234577888887422    1222  


Q ss_pred             eeEEeeCCE
Q psy14060        267 DVYWLKVSS  275 (283)
Q Consensus       267 ~v~W~~~g~  275 (283)
                      .+.|.+++.
T Consensus       231 ~v~~~~~~~  239 (389)
T 2jll_A          231 QVDVKEVAS  239 (389)
T ss_dssp             EEEEEETTC
T ss_pred             EEEEEECCC
Confidence            467887764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.93  E-value=1e-25  Score=187.05  Aligned_cols=210  Identities=11%  Similarity=0.149  Sum_probs=148.4

Q ss_pred             eeeecCcEEEEEEEccCc-cce-EEeec----------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee-
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-RKITA----------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL-  125 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-  125 (283)
                      .+.+|+.+.|.|.+.|.+ ... .|...          ..++...  +  ..|.|.+++.+|+|.|+|.+.|..+.... 
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--K--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             EEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--S--SBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             EEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc--C--CeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            477788999999999887 222 33332          2233322  2  27999999999999999999988763221 


Q ss_pred             eccC-CCCCCeEEecC---CceeecCCCcEEEEEEE------eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC
Q psy14060        126 SEQK-PAKPPVFTKKI---QPCRAFEQDQARFEVEF------DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       126 ~~~~-~~~~p~~~~~~---~~~~~~~g~~v~l~C~~------~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~  195 (283)
                      ..+. +..+|.+...+   ....+..|+.+.|.|.+      .|.|.+.+.|+|++..+...... .....  ..|.|.+
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~-~~~~~--~~L~i~~  168 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVK--DRLIVMN  168 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSS-EEEET--TEEEESS
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccce-EeecC--ceEEEEe
Confidence            1121 12334332222   23467889999999998      78899999999999998653321 22222  2699999


Q ss_pred             CCCCCCEEEEEEEE-eCCceeE---EEEEEEEEeccCCCCCCCCCCeEEecCCc-eEEcCCCeEEEEEEEEeeCCCeeEE
Q psy14060        196 VFMEDSGVFAVIAE-NRGGKAK---CSANLVVEEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISATKPLDVYW  270 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~-n~~g~~~---~~~~l~v~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W  270 (283)
                      +..+|+|.|+|.+. |..|...   ....+.+....     ...+|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|
T Consensus       169 v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-----~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W  243 (315)
T 1itb_B          169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-----KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYW  243 (315)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC-----CCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEE
T ss_pred             ceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC-----CCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEE
Confidence            99999999999999 7777753   23334343211     1146777665554 4789999999999999999999999


Q ss_pred             eeCCEEecCC
Q psy14060        271 LKVSSLSDVK  280 (283)
Q Consensus       271 ~~~g~~l~~~  280 (283)
                      ++||..+...
T Consensus       244 ~~~g~~i~~~  253 (315)
T 1itb_B          244 KWNGSVIDED  253 (315)
T ss_dssp             EETTEECCTT
T ss_pred             EECCEECCcc
Confidence            9999988764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.93  E-value=5.6e-25  Score=184.00  Aligned_cols=206  Identities=13%  Similarity=0.099  Sum_probs=143.9

Q ss_pred             eeecCcEEEEEEEccC---------ccce-EEeecCCCEEEEEc-CCEEEEEEccCCCCCCe-EEEEEEEecceeee--e
Q psy14060         60 IHTAKSQQVQKEKKGD---------KEIV-RKITATETTEMEHK-GKIQERVVDASELDDDG-YYAITERKYYALSD--L  125 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~---------~~i~-~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~~~~--~  125 (283)
                      +.+|+.+.|.|.+.+.         |... .|...+........ .....|.|.+++.+|+| .|+|.+.|..|...  .
T Consensus        41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~  120 (329)
T 3oq3_B           41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI  120 (329)
T ss_dssp             ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEE
T ss_pred             EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceeeEE
Confidence            6678899999999884         3222 44443322211000 01347999999999999 99999999886321  1


Q ss_pred             eccCCCCCCeEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       126 ~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ....+..+|.+........+..|+.+.|.|.+.|.| .+.+.|+|++..+.. ..++...  +  ..|.|.++..+|+|.
T Consensus       121 ~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--~--~~L~I~~v~~~D~G~  196 (329)
T 3oq3_B          121 VRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--G--QNLIIHNPELEDSGR  196 (329)
T ss_dssp             EEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--T--TEEEECSCCGGGCEE
T ss_pred             EEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC--C--CEEEEeecChhhCEE
Confidence            112233345544443334567799999999999999 899999999998863 2333332  2  469999999999999


Q ss_pred             EEEEEEeC--CceeEE----EEEEEEEeccCCCCCCCCCC-eEEecCCceEEcCCCeEEEEEEEEeeC---CC-eeEEee
Q psy14060        204 FAVIAENR--GGKAKC----SANLVVEEKRQGGRGGVVPP-SFLTTISSAVINVGQLARFDAKISATK---PL-DVYWLK  272 (283)
Q Consensus       204 Y~C~a~n~--~g~~~~----~~~l~v~~~~~~~~~~~~~p-~~~~~~~~~~v~~g~~v~L~C~~~g~p---~~-~v~W~~  272 (283)
                      |+|.|.|.  .|....    .+.|.|....       ... .+. .+....+..|+.+.|.|.+.|.|   .+ .+.|++
T Consensus       197 Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~-------~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~  268 (329)
T 3oq3_B          197 YDCYVHYDDVRIKNDIVVSRCKILTVIPSQ-------DHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN  268 (329)
T ss_dssp             EEEEEEECCTTSSSCEEEEEEEEEEEECCC-------CCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEEC
T ss_pred             EEEEEEecccCCCceeEEEeeEEEEEECCC-------CCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEE
Confidence            99999997  544322    3667776421       000 333 55667899999999999999988   67 889999


Q ss_pred             CCEEe
Q psy14060        273 VSSLS  277 (283)
Q Consensus       273 ~g~~l  277 (283)
                      +|..+
T Consensus       269 ~g~~i  273 (329)
T 3oq3_B          269 PSGWI  273 (329)
T ss_dssp             TTSCB
T ss_pred             CCeee
Confidence            99874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=2.6e-26  Score=192.15  Aligned_cols=210  Identities=18%  Similarity=0.252  Sum_probs=105.3

Q ss_pred             CeeeecCcEEEEEEEccCc---cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeecc
Q psy14060         58 KEIHTAKSQQVQKEKKGDK---EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQ  128 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~---~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~  128 (283)
                      ..+.+|+.++|.|.+.+.+   .+.     ..+....++.+    ....|.|.+++.+|+|.|+|.+.|. +. .....+
T Consensus        18 ~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l   92 (334)
T 1ry7_B           18 LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSV   92 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEEEEE
Confidence            3577899999999999863   332     12222233322    2468999999999999999999988 42 222223


Q ss_pred             CCCC----------------------CCeEEec----CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-E
Q psy14060        129 KPAK----------------------PPVFTKK----IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-Q  181 (283)
Q Consensus       129 ~~~~----------------------~p~~~~~----~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~  181 (283)
                      .+..                      +|.+...    .....+..|+.+.|.|.+.|.|.+.+.|++++..+....++ .
T Consensus        93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  172 (334)
T 1ry7_B           93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG  172 (334)
T ss_dssp             --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred             EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence            3322                      3333221    12356788999999999999999999999999887654322 1


Q ss_pred             EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEE
Q psy14060        182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKI  260 (283)
Q Consensus       182 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~  260 (283)
                      +........|.|.++..+|+|.|+|.+.|..|.....+.|.|.....      .+|.+.. .+....+..|+.+.|.|.+
T Consensus       173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~------~~p~~~~~~~~~~~~~~G~~v~l~C~~  246 (334)
T 1ry7_B          173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP------HRPILQAGLPANQTAVLGSDVEFHCKV  246 (334)
T ss_dssp             CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC------SSCBCCTTCSCCEEEESSCCEEECCCC
T ss_pred             eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC------CCCceEecCCCceEEeCCCCEEEEEEE
Confidence            11223345799999999999999999999999988888888875311      1343433 2456788999999999999


Q ss_pred             EeeCCCeeEEee----CCEEec
Q psy14060        261 SATKPLDVYWLK----VSSLSD  278 (283)
Q Consensus       261 ~g~p~~~v~W~~----~g~~l~  278 (283)
                      .|.|.|.+.|++    ||..+.
T Consensus       247 ~g~p~p~v~W~~~~~~~g~~~~  268 (334)
T 1ry7_B          247 YSDAQPHIQWLKHVEVNGSKVG  268 (334)
T ss_dssp             BCSSCEEEEEEECCCGGGCSBC
T ss_pred             ecCCCCeEEEEECCcCCCcccc
Confidence            999999999999    776654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.92  E-value=1.2e-22  Score=176.75  Aligned_cols=235  Identities=9%  Similarity=0.009  Sum_probs=155.7

Q ss_pred             ccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeee-cCCeeeecCcEEEEEEEccCccc---e-EEeecCCCEEE
Q psy14060         16 KKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGV-HGKEIHTAKSQQVQKEKKGDKEI---V-RKITATETTEM   90 (283)
Q Consensus        16 ~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~v~~g~~v~l~C~~~g~~~i---~-~~~~~~~~~~~   90 (283)
                      .++- +.|.|.|..|..+....|.|..++...     ... ....+.+|+.++|.|.+.|.+..   . .|...+.....
T Consensus        59 ~d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~-----~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~  132 (450)
T 1z7z_I           59 EDSQ-PMCYSNCPDGQSTAKTFLTVYWTPERV-----ELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR  132 (450)
T ss_dssp             SCBC-CEEEEEETTEEEEEECEEEEEBCCSEE-----EECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             cCCe-eEEEEeCCCCcceeEEEEEEEeCCCcc-----eecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec
Confidence            3344 789999888888888899998754311     111 11347788999999999997733   3 55544433322


Q ss_pred             EE---cCCEEEEEEccCCCCCCeEEEEEEEecceee---------eeeccCC----CCCCeEEecCCceeecCCCcEEEE
Q psy14060         91 EH---KGKIQERVVDASELDDDGYYAITERKYYALS---------DLSEQKP----AKPPVFTKKIQPCRAFEQDQARFE  154 (283)
Q Consensus        91 ~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~---------~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~  154 (283)
                      ..   ......|.|.++..+|+|.|+|.+.|..+..         ....+.+    ..+|.+..   ...+..|+.+.|.
T Consensus       133 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~  209 (450)
T 1z7z_I          133 EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVV  209 (450)
T ss_dssp             EECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEE
T ss_pred             ccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEE
Confidence            21   2335689999999999999999999985521         1111211    12343322   2578899999999


Q ss_pred             EEEeee-c--CCEEEEEeCCEecCCCCCeEEEEeCCEEEEE-EcCCCCCCCE--EEEEEEEeCCceeEEEEEEEEEeccC
Q psy14060        155 VEFDGD-P--LPTIKWFREDFPITSSPDFQIHTFSTKSILI-MRQVFMEDSG--VFAVIAENRGGKAKCSANLVVEEKRQ  228 (283)
Q Consensus       155 C~~~g~-p--~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~-i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~v~~~~~  228 (283)
                      |.+.|. |  .+.+.|++++..+..  +  +........+. ..++..+|.|  .|+|.+.|..|.....+.|.|...  
T Consensus       210 C~~~g~~P~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~--  283 (450)
T 1z7z_I          210 CSLDGLFPVSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--  283 (450)
T ss_dssp             EEEESCTTGGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECC--
T ss_pred             EEeeCCCCCCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecC--
Confidence            999998 6  789999999998765  2  33333332222 2267899999  999999999999888889988863  


Q ss_pred             CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        229 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       229 ~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                            .+|.+..  ....+.+|+.+.|.|.+.  |.|.++|  +|+.+
T Consensus       284 ------~~p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~  320 (450)
T 1z7z_I          284 ------PAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPA  320 (450)
T ss_dssp             ------CCCEEEE--SCSEEETTCEEEEEEEC-----------------
T ss_pred             ------CCCeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEc
Confidence                  2455543  345899999999999998  8889999  88877

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.92  E-value=6.6e-25  Score=190.27  Aligned_cols=250  Identities=11%  Similarity=0.071  Sum_probs=161.8

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEcc-Cccc-e-EEeecCCC------E
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKG-DKEI-V-RKITATET------T   88 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g-~~~i-~-~~~~~~~~------~   88 (283)
                      .+.|.|.|..|.. .....|.|....   ..|.+..... .....|+.+.|.|.+.| .|.. . .|...+..      .
T Consensus        89 ~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  165 (438)
T 1qgc_4           89 TYYCQQSNEVPLTFGAGTKLDLKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  165 (438)
T ss_dssp             EEEEEECSSTTCCBCCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             eEEEEEecCCCccccCceeEEecCCC---CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCcee
Confidence            4678899987743 444566664321   2444443222 22345778999999987 4532 2 33332211      0


Q ss_pred             EEE----EcC---CEEEEEEccCCCCCCeEEEEEEEecceeee-eeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee
Q psy14060         89 EME----HKG---KIQERVVDASELDDDGYYAITERKYYALSD-LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD  160 (283)
Q Consensus        89 ~~~----~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~  160 (283)
                      ...    ..+   ....|.|.++..+|+|.|+|.+.|..+... ...+....++.....+....+..|+.+.|.|.+.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~  245 (438)
T 1qgc_4          166 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGF  245 (438)
T ss_dssp             EEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred             ccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEccc
Confidence            000    011   145799999999999999999999877421 122222223334445566789999999999999988


Q ss_pred             c--CCEEEEEeC--CEecC-----------------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeCCc----
Q psy14060        161 P--LPTIKWFRE--DFPIT-----------------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENRGG----  213 (283)
Q Consensus       161 p--~~~~~W~k~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----  213 (283)
                      |  .+.+.|+|+  +..+.                 ...++.+...  .....|.|.++..+|+|.|+|.|.|..+    
T Consensus       246 p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~  325 (438)
T 1qgc_4          246 IFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGF  325 (438)
T ss_dssp             CGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCC
T ss_pred             ccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccc
Confidence            7  679999996  43221                 1245555543  3456899999999999999999998443    


Q ss_pred             -eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEec
Q psy14060        214 -KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSD  278 (283)
Q Consensus       214 -~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~  278 (283)
                       .......+.|....      ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++||+.+.
T Consensus       326 ~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~  387 (438)
T 1qgc_4          326 AYWGQGTVVTVSAAK------TTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSG  387 (438)
T ss_dssp             CSBCCCEEEEECSSC------CBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSS
T ss_pred             eeeCCCEEEEEecCC------CCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCc
Confidence             22233456665310      124555544434456789999999999997 887 999999998764

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.92  E-value=4.5e-24  Score=178.19  Aligned_cols=208  Identities=14%  Similarity=0.135  Sum_probs=139.3

Q ss_pred             eeeecCcEEEEEEEccC-c--cceEEeecCC---------------CEEEEEc-----CCEEEEEEccCCCCCCeEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGD-K--EIVRKITATE---------------TTEMEHK-----GKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~-~--~i~~~~~~~~---------------~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      .+.+|+.+.|.|.+.|. |  .+ .|.....               ++.....     .....|.|.+++.+|+|.|+|.
T Consensus        14 ~v~~G~~v~L~C~~~~~~p~~~v-~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (327)
T 2wng_A           14 SVAAGESAILHCTVTSLIPVGPI-QWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCV   92 (327)
T ss_dssp             EEETTSCEEECCEESCCCSCCCE-EEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEE
T ss_pred             EEecCCcEEEEEEccCcCCCceE-EEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEE
Confidence            47778899999999987 5  33 4443321               2222111     3456799999999999999999


Q ss_pred             EEecceee------eeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEEEE
Q psy14060        116 ERKYYALS------DLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHT  184 (283)
Q Consensus       116 a~n~~~~~------~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~~~  184 (283)
                      +.|..+..      ....+.+   ..+|.+. . ....+..|+.+.|.|.+.+.|.+  .+.|++++..+..........
T Consensus        93 a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~-~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~  170 (327)
T 2wng_A           93 KFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-G-PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPV  170 (327)
T ss_dssp             EEESSTTCEEEEECCCEEEEEEBCCCCCEEE-C-CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECS
T ss_pred             eecCCCcceeEeecCcEEEEEEecCCCceee-c-cccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccc
Confidence            99875421      1112222   2233333 2 23567889999999999998766  899999999886432110000


Q ss_pred             -e-CC---EEEEEEcCCCCCCCEEEEEEEEeCCcee---EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEE
Q psy14060        185 -F-ST---KSILIMRQVFMEDSGVFAVIAENRGGKA---KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARF  256 (283)
Q Consensus       185 -~-~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L  256 (283)
                       . +.   .+.|.|.....+|.|.|+|.+.|..+..   .....+.+...        .+|.+...+..  +.+|+.+.|
T Consensus       171 ~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~--------~~P~i~~~~~~--~~~G~~v~l  240 (327)
T 2wng_A          171 GESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR--------VPPTLEVTQQP--VRAENQVNV  240 (327)
T ss_dssp             SCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBC--------BCCEEEEEEEC--CSSTTCCEE
T ss_pred             cCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccC--------CCCEEEEecCC--cCCCCcEEE
Confidence             0 01   2357777777777899999999987652   33333322211        46777665444  789999999


Q ss_pred             EEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        257 DAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       257 ~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .|.+.|.|++  .|.|++||+.+..
T Consensus       241 ~C~~~g~~p~~~~v~W~k~g~~l~~  265 (327)
T 2wng_A          241 TCQVRKFYPQRLQLTWLENGNVSRT  265 (327)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEEEE
T ss_pred             EEEEccccCCCcEEEEEECCeEccC
Confidence            9999996544  7999999998753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=1.5e-24  Score=180.35  Aligned_cols=221  Identities=8%  Similarity=-0.021  Sum_probs=148.6

Q ss_pred             CCCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEEecce---
Q psy14060         47 VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEM--EHKGKIQERVVDASELDDDGYYAITERKYYA---  121 (283)
Q Consensus        47 ~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~---  121 (283)
                      .++|.+...+...+.+|+.++|.|.+.+.+....|...+.....  ........|.|.+++.+|+|.|+|.+.|...   
T Consensus        22 ~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~  101 (316)
T 3vh8_G           22 QDKPFLSAWPSAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTG  101 (316)
T ss_dssp             --CCEEEEESCSEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSS
T ss_pred             CCCCEeeccCCCccCCCCCEEEEEEccCCCceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcc
Confidence            34666666666668889999999999987532244433322110  0111345789999999999999999886422   


Q ss_pred             ---eeeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE-eCCEEEEEEc
Q psy14060        122 ---LSDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT-FSTKSILIMR  194 (283)
Q Consensus       122 ---~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~-~~~~~~l~i~  194 (283)
                         .+....+.+   ..+|.+...+... +..|+.++|.|.+.+ +.+.+.|+|++..+.......... ......|.|.
T Consensus       102 ~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~  179 (316)
T 3vh8_G          102 WSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG  179 (316)
T ss_dssp             BCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEEC
T ss_pred             eecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEEC
Confidence               111112222   2356666555443 889999999999954 677999999988764321111111 1134579999


Q ss_pred             CCCCCCCEEEEEEEEeCCcee-----EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeE
Q psy14060        195 QVFMEDSGVFAVIAENRGGKA-----KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY  269 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~  269 (283)
                      ++..+|+|.|+|.|.|..+..     .....|.|....       .+|.+...+. ..+.+|+.++|.|.+.. |.+.+.
T Consensus       180 ~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~-------~~p~i~~~~~-~~v~~G~~v~L~C~~~~-~~~~~~  250 (316)
T 3vh8_G          180 PMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY-------EKPSLSAQPG-PKVQAGESVTLSCSSRS-SYDMYH  250 (316)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS-------CCCEEEEESC-SCCCTTSCCEEEEEESS-CCSEEE
T ss_pred             CCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC-------CCCeEEeCCC-CeecCCCcEEEEEECCC-CCcEEE
Confidence            999999999999999987641     344566666421       3566665544 36789999999999974 778999


Q ss_pred             EeeCCEEec
Q psy14060        270 WLKVSSLSD  278 (283)
Q Consensus       270 W~~~g~~l~  278 (283)
                      |+++|..+.
T Consensus       251 W~k~g~~~~  259 (316)
T 3vh8_G          251 LSREGGAHE  259 (316)
T ss_dssp             EEETTSSCC
T ss_pred             EEECCCcCC
Confidence            999997654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.92  E-value=4.1e-25  Score=181.30  Aligned_cols=209  Identities=15%  Similarity=0.146  Sum_probs=151.6

Q ss_pred             eeeecCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCe-E
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPV-F  136 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~-~  136 (283)
                      .+.+|+.++|.|.+.|.-..  ......+......+....|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|. +
T Consensus        15 ~v~~G~~v~L~C~~~~~v~W--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~   92 (292)
T 4dkd_C           15 VVKPGATVTLRCVGNGSVEW--DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPW   92 (292)
T ss_dssp             EECTTCCEEEEEECSSCCCB--CCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCE
T ss_pred             EEcCCCcEEEEEcCCCceEE--ccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccc
Confidence            46788899999999986321  112233445555556789999999999999999999887653 3334455555554 4


Q ss_pred             EecCCceeecCCCcEEEEEEEeeecC--CEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      ...+....+..|+.+.|.|.+.+ |.  +.+.|+++ +..+....++.+...   ..|.|.++..+|+|.|+|.+.|..+
T Consensus        93 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~  168 (292)
T 4dkd_C           93 NVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGR  168 (292)
T ss_dssp             EESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSS---SCCEETTCCGGGCSEEEEEECSTTS
T ss_pred             cccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCC---ceEEECCCCHHHCeEEEEEEEeCCC
Confidence            55667788999999999999988 55  78999997 455544444433222   2399999999999999999998877


Q ss_pred             eeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecC
Q psy14060        214 KAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       214 ~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~  279 (283)
                      .... .+.|.|....      ..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..
T Consensus       169 ~~~s~~~~l~V~~~~------~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~  230 (292)
T 4dkd_C          169 KVMSISIRLKVQKVI------PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI  230 (292)
T ss_dssp             CEECCCEEEEEECCC------CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCC
T ss_pred             ceeEEEEEEEEeCCC------CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCccccc
Confidence            6543 6777777421      127888888877778899999999999987654 6889999876643

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.92  E-value=1.7e-24  Score=174.70  Aligned_cols=199  Identities=8%  Similarity=0.031  Sum_probs=147.2

Q ss_pred             eeeecCcEEEEEEEccCccc-e-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI-V-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVF  136 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i-~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~  136 (283)
                      .+.+|+.+.|.|.+.+.|.. . .|...+..  +.  .....|.|.+++.+|+|.|+|.+.|..+.. ...+.+..++ +
T Consensus        12 ~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~--~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~-~~~l~v~~~~-~   85 (262)
T 3rjd_A           12 SVFQEETVTLHCEVLHLPGSSSTQWFLNGTA--TQ--TSTPSYRITSASVNDSGEYRCQRGLSGRSD-PIQLEIHRGW-L   85 (262)
T ss_dssp             EEETTCCEEEEEECSSCCCTTCEEEEETTEE--CS--CCSSEEEESSCCGGGCEEEEEEESSSCCCC-CEEEEEECSS-E
T ss_pred             EeeCCCeEEEEEECCCCCCCceEEEEECCEE--ee--ccCCeEEEecCCcccCeEEEEEEecCCccc-cEEEEEeccc-e
Confidence            57789999999999988733 2 55543322  11  124578999999999999999998865532 2223333344 3


Q ss_pred             EecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        137 TKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...        .....|.|.++..+|.|.|+|.+.|..+..
T Consensus        86 ~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~  157 (262)
T 3rjd_A           86 LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYT  157 (262)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEE
T ss_pred             EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCcc
Confidence            344455678899999999999 67778899999999876321        112359999999999999999999999877


Q ss_pred             EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC-C----eeEEeeCCEEecC
Q psy14060        216 KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP-L----DVYWLKVSSLSDV  279 (283)
Q Consensus       216 ~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~----~v~W~~~g~~l~~  279 (283)
                      ...+.|.|....       .+|.+...+ ...+.+|+.+.|.|.+.+.|. |    .+.|+++|..+..
T Consensus       158 ~~~~~l~V~~~~-------~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~  218 (262)
T 3rjd_A          158 SAGISVTVKELF-------PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG  218 (262)
T ss_dssp             EECEEEEEECSS-------CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE
T ss_pred             ccceEEEeccCC-------CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc
Confidence            777888888631       245555444 566889999999999999876 4    3789999998863

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.92  E-value=6.8e-25  Score=189.49  Aligned_cols=201  Identities=13%  Similarity=0.099  Sum_probs=128.4

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCE----EEE-EcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETT----EME-HKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQKPA  131 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~----~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~  131 (283)
                      +|.+|+++.|.|.+.|.|.+. .|+......    ... .......|.|.+++.+|+|.|+|.|.|..+.. ....+.+.
T Consensus        59 ~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  138 (423)
T 3qs7_E           59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR  138 (423)
T ss_dssp             EECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC
T ss_pred             EEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            588899999999999988544 443222111    111 12234679999999999999999999998743 23344444


Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC---CeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP---DFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+|.+. ...+..+..|+.+.|.|.+.|.|.|.++|++++..+....   ...+.....  .+     ...|+|.|.|.|
T Consensus       139 ~~p~~~-~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~--~l-----~~~d~G~Y~C~A  210 (423)
T 3qs7_E          139 NTLLYT-LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK--VL-----HELFGTDIRCCA  210 (423)
T ss_dssp             -----C-EEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCS--EE-----CCCCSSCEEEEE
T ss_pred             cCcccc-ccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccce--EE-----ecccCeEEEEEE
Confidence            444432 1222344567788999999999999999999887543210   001111111  11     578999999999


Q ss_pred             EeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060        209 ENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       209 ~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~l~~  279 (283)
                      .|..|..... +.|.|..          +|.+  .+....+.+|+.+.|.|.+.| .|.|.|.|+++|+.+..
T Consensus       211 ~N~~G~~~~~~~~l~V~~----------~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~  271 (423)
T 3qs7_E          211 RNELGRECTRLFTIDLNQ----------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE  271 (423)
T ss_dssp             ECSSCEEEEECEEEESSS----------CCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCG
T ss_pred             EcCCCCcceeeEEEEEec----------CCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccc
Confidence            9999876542 4554442          3332  334677899999999999999 67789999999987643

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=1.3e-23  Score=161.96  Aligned_cols=165  Identities=22%  Similarity=0.331  Sum_probs=133.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecC--------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITAT--------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQ  128 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~--------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~  128 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+        .++.+...++...|.|.+++.+|+|.|+|.+.|..+.. ....+
T Consensus        16 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l   95 (194)
T 2a38_A           16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL   95 (194)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEE
Confidence            467788999999999877322 333221        24555556678899999999999999999999987732 22223


Q ss_pred             CC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        129 KP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       129 ~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      .+   ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+
T Consensus        96 ~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  175 (194)
T 2a38_A           96 LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS  175 (194)
T ss_dssp             EEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEE
T ss_pred             EEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEE
Confidence            22   256777777777889999999999999999999999999999998877888888888888999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEE
Q psy14060        206 VIAENRGGKAKCSANLVV  223 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.|..|.....+.|.|
T Consensus       176 C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          176 VNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCceEEEEEEEE
Confidence            999999999888887776

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.92  E-value=2e-24  Score=185.06  Aligned_cols=215  Identities=18%  Similarity=0.205  Sum_probs=152.0

Q ss_pred             eeeecCcEEEEEEEccC-ccce-EEeec--------CCCEEEEEcCCEEEEEEccC-----CCCCCeEEEEEEEecce-e
Q psy14060         59 EIHTAKSQQVQKEKKGD-KEIV-RKITA--------TETTEMEHKGKIQERVVDAS-----ELDDDGYYAITERKYYA-L  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~-~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~a~n~~~-~  122 (283)
                      .+.+|+.++|.|.+.+. |... .|...        ..+.....   ...|.|.++     +.+|+|.|+|.+.+... .
T Consensus        32 ~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~  108 (403)
T 3laf_A           32 VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP---NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS  108 (403)
T ss_dssp             EECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECT---TSCEEECSCCCBTTBCSSCEEEEEEEECGGGCE
T ss_pred             EEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEec---CCcEEEeeeeccCCCCCcceEEEEEEEeCCCcc
Confidence            46678899999999874 4221 23221        22333332   234667766     77899999999986543 2


Q ss_pred             --eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        123 --SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       123 --~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                        .....+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+................|.|.++..+|
T Consensus       109 ~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  188 (403)
T 3laf_A          109 IISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGD  188 (403)
T ss_dssp             EECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGG
T ss_pred             EEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEccccccc
Confidence              233345555678887777888999999999999999999999999999988753221111111123369999999999


Q ss_pred             CEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        201 SGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      +|.|+|.+.|..+... ....+.|......    ..++.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       189 ~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  264 (403)
T 3laf_A          189 SGVYRCSARNPASTRTGNEAEVRILSDPGL----HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL  264 (403)
T ss_dssp             CEEEEEEEECSSCCCBCCCEEEEEECCCCC----CEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             CEEEEEEEEcCCCceeccceeEEEecCCCc----ccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccC
Confidence            9999999999877633 4466666642100    0112345556677889999999999999999999999999998865


Q ss_pred             C
Q psy14060        280 K  280 (283)
Q Consensus       280 ~  280 (283)
                      .
T Consensus       265 ~  265 (403)
T 3laf_A          265 R  265 (403)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.92  E-value=8.9e-24  Score=165.05  Aligned_cols=172  Identities=15%  Similarity=0.214  Sum_probs=127.3

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEcc-Cc--cce-----EEeecCCCEEEEEcC--CEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKG-DK--EIV-----RKITATETTEMEHKG--KIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g-~~--~i~-----~~~~~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .|.|......++.+|+.++|.|.+.+ .|  .+.     +.+..+.++.+..++  +...|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~p~~~~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             ---CCEEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CCeeecCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            45555444456888889999999964 46  333     455556666666544  678899999999999999999988


Q ss_pred             cceeeeeeccC--------------------CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCC
Q psy14060        119 YYALSDLSEQK--------------------PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSS  177 (283)
Q Consensus       119 ~~~~~~~~~~~--------------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~  177 (283)
                      .........+.                    ...+|.|...+ ...+.+|+.+.|.|.+.|. |.|.++|+|++..+...
T Consensus        83 g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~  161 (207)
T 3rbs_A           83 GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD  161 (207)
T ss_dssp             TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCC
T ss_pred             CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCC
Confidence            44322211100                    01267776655 4778899999999999998 89999999999998765


Q ss_pred             CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       178 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      .++.  ......+|.|.++..+|+|.|+|.|.|..|...+.+.|.+
T Consensus       162 ~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          162 EKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            4431  2233457999999999999999999999999998888754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.92  E-value=1.9e-24  Score=188.19  Aligned_cols=228  Identities=10%  Similarity=-0.010  Sum_probs=142.3

Q ss_pred             ceEEEEEcCCeeee--------eeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccC-c--cce-EEeecC--
Q psy14060         20 LKSRTASSDRSGVS--------TEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGD-K--EIV-RKITAT--   85 (283)
Q Consensus        20 ~~~~~a~n~~g~~~--------~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~-~--~i~-~~~~~~--   85 (283)
                      .+.|.|.|..|...        ....+.|...+  ...|.+..  ...+.+|+.+.|.|.+.|. |  .+. .|...+  
T Consensus       156 ~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~--~~~p~~~~--~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~  231 (450)
T 1z7z_I          156 NFSCRTELDLRPQGLELFENTSAPYQLQTFVLP--ATPPQLVS--PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR  231 (450)
T ss_dssp             EEEEEEEEECGGGTSCEEEEECCCEECEECCCC--SSCCEEEC--CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEE
T ss_pred             eEEEEEEcccCCCCceEEeeccCccceeeeccC--CCCCEecC--ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEe
Confidence            46788888877543        33334444331  22333321  1357889999999999998 5  333 333221  


Q ss_pred             --CCEEEEEcCCEEEEE-EccCCCCCCe--EEEEEEEecceee-eeeccCCC--CCCeEEecCCceeecCCCcEEEEEEE
Q psy14060         86 --ETTEMEHKGKIQERV-VDASELDDDG--YYAITERKYYALS-DLSEQKPA--KPPVFTKKIQPCRAFEQDQARFEVEF  157 (283)
Q Consensus        86 --~~~~~~~~~~~~~L~-i~~~~~~D~G--~Y~C~a~n~~~~~-~~~~~~~~--~~p~~~~~~~~~~~~~g~~v~l~C~~  157 (283)
                        .++...  +....+. ..+++.+|+|  .|+|.+.|..+.. ....+.+.  .+|.+..  ....+.+|+.+.|.|.+
T Consensus       232 ~~~~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~--~~~~v~~G~~v~l~C~~  307 (450)
T 1z7z_I          232 LNPTVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL--TKPEVSEGTEVTVKCEA  307 (450)
T ss_dssp             CCCEEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEE--SCSEEETTCEEEEEEEC
T ss_pred             CCceEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEec--CCeeEeCCCcEEEEEec
Confidence              122222  2222222 2278999999  9999999997742 22233332  2455543  34588999999999999


Q ss_pred             eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc-e---eEEEEEEEEEeccCCCCCC
Q psy14060        158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG-K---AKCSANLVVEEKRQGGRGG  233 (283)
Q Consensus       158 ~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~~~~~~~~  233 (283)
                      .  |.|.++|  +|..+...        +....|.|..+..+|.|.|+|.|.|..+ .   ....+.|.|..        
T Consensus       308 ~--p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~--------  367 (450)
T 1z7z_I          308 H--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY--------  367 (450)
T ss_dssp             ----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEE--------
T ss_pred             C--CCCEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEec--------
Confidence            7  8899999  66665221        1223599999999999999999997654 3   33557777764        


Q ss_pred             CCCCeEEecC--CceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        234 VVPPSFLTTI--SSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       234 ~~~p~~~~~~--~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                        +|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+
T Consensus       368 --~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~  411 (450)
T 1z7z_I          368 --GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP  411 (450)
T ss_dssp             --EEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE
T ss_pred             --CCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCccc
Confidence              56665543  4568899999999999999999999999999743

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.92  E-value=1.9e-22  Score=166.40  Aligned_cols=221  Identities=16%  Similarity=0.237  Sum_probs=159.4

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-EEe------e-cCCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-RKI------T-ATETTEME-HKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-~~~------~-~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .|.|...+.. .+.+|+.+.|.|.+.|.|... .|.      . ...++.+. ..++...|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN   83 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEc
Confidence            3444433322 466788999999999988332 222      2 22345443 345677999999999999999999999


Q ss_pred             ccee-eeeeccCCCCCCeEEe-----cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEE
Q psy14060        119 YYAL-SDLSEQKPAKPPVFTK-----KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI  192 (283)
Q Consensus       119 ~~~~-~~~~~~~~~~~p~~~~-----~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~  192 (283)
                      ..+. .....+.+..+|.+..     .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.
T Consensus        84 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~  163 (305)
T 2nzi_A           84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV  163 (305)
T ss_dssp             TTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEE
T ss_pred             CCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEE
Confidence            9874 3333444444444322     234567888999999999999999999999999988877777777766778899


Q ss_pred             EcC-CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEec----CCceEE------cCCCeEEEEEEEE
Q psy14060        193 MRQ-VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT----ISSAVI------NVGQLARFDAKIS  261 (283)
Q Consensus       193 i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~----~~~~~v------~~g~~v~L~C~~~  261 (283)
                      |.+ +..+|.|.|+|.|.|..|.......|.|....       .+|.....    .....+      ..|....+.|.+.
T Consensus       164 i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P-------~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~  236 (305)
T 2nzi_A          164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP-------DPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE  236 (305)
T ss_dssp             ETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC-------CCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEE
T ss_pred             EecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC-------CCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEE
Confidence            999 99999999999999999999888888888632       23332211    111222      2355667788888


Q ss_pred             eeCCCeeEEeeCCEE
Q psy14060        262 ATKPLDVYWLKVSSL  276 (283)
Q Consensus       262 g~p~~~v~W~~~g~~  276 (283)
                      ..+.+...|++.+..
T Consensus       237 ~~~~~~~~w~~~~~~  251 (305)
T 2nzi_A          237 KCATTAERWLRVGQA  251 (305)
T ss_dssp             EEETTSCCEEEEEEE
T ss_pred             EecCCCCccEECccc
Confidence            888888899886543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.91  E-value=5.2e-24  Score=176.76  Aligned_cols=210  Identities=12%  Similarity=0.016  Sum_probs=145.5

Q ss_pred             eeecCcEEEEEEEccCccc------eEEeecC-------------------CCEEEEE-----cCCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDKEI------VRKITAT-------------------ETTEMEH-----KGKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i------~~~~~~~-------------------~~~~~~~-----~~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++++|.|.+.+.+..      ..|...+                   .++.+..     .....+|.|.+++.+|+
T Consensus        12 ~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~   91 (313)
T 4fqp_A           12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDE   91 (313)
T ss_dssp             CBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGC
T ss_pred             EecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhC
Confidence            4578899999999876621      1333221                   1222110     01235799999999999


Q ss_pred             eEEEEEEEecc-e-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeC
Q psy14060        110 GYYAITERKYY-A-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFS  186 (283)
Q Consensus       110 G~Y~C~a~n~~-~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~  186 (283)
                      |.|+|.+.+.. + ......+.+..+|.+........+..++.+.+.|.+. +.|.+.+.|++++..+...........+
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~  171 (313)
T 4fqp_A           92 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG  171 (313)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTT
T ss_pred             EEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccc
Confidence            99999876443 3 3344556666778777766667777888899999875 6789999999998765432111110111


Q ss_pred             C---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEE--EEEEEEeccCCCCCCCCCCeEEec-CCceEEcCCCeEEEEEEE
Q psy14060        187 T---KSILIMRQVFMEDSGVFAVIAENRGGKAKCS--ANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKI  260 (283)
Q Consensus       187 ~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~  260 (283)
                      .   .+.|.|......|.|.|+|.|.|..+.....  ..|.|.          .+|.+... .....+..|+.++|.|.+
T Consensus       172 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~----------~~P~v~~~~~~~~~~~~g~~v~l~C~~  241 (313)
T 4fqp_A          172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY----------YPPEVSISGYDNNWYLGQNEATLTCDA  241 (313)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC----------EEEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred             ccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc----------cCCccccccccceeecCCCeEEEEEEe
Confidence            1   2358899999999999999999987654443  444444          35666543 445567889999999999


Q ss_pred             EeeCCC-eeEEeeCCEEecC
Q psy14060        261 SATKPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       261 ~g~p~~-~v~W~~~g~~l~~  279 (283)
                      .|+|.| .|+|+++|.++..
T Consensus       242 ~g~P~p~~v~W~~~~~~l~~  261 (313)
T 4fqp_A          242 RSNPEPTGYNWSTTMGPLPP  261 (313)
T ss_dssp             EEESCCCEEEEEETTBSCCT
T ss_pred             cCCCCCcEEEEEECCEECCC
Confidence            999999 6999999987643

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=4.3e-23  Score=179.42  Aligned_cols=248  Identities=10%  Similarity=-0.018  Sum_probs=155.0

Q ss_pred             ceEEEEEcCCee---eeeeeEEEEeCCCCCCCCCceee-ecCCeeeecCcEEEEEEEccC-cc-ce-EEeecCCCE----
Q psy14060         20 LKSRTASSDRSG---VSTEETKIIDGRKVSVPEPSASG-VHGKEIHTAKSQQVQKEKKGD-KE-IV-RKITATETT----   88 (283)
Q Consensus        20 ~~~~~a~n~~g~---~~~~~~l~v~~~~~~~~~p~~~~-~~~~~v~~g~~v~l~C~~~g~-~~-i~-~~~~~~~~~----   88 (283)
                      .+.|.|.|..|.   ......|.|.....  ..|.+.. .....+..|+.+.|.|.+.|. |. +. .|.......    
T Consensus        93 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  170 (444)
T 1igt_B           93 MYYCARHGGYYAMDYWGQGTTVTVSSAKT--TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT  170 (444)
T ss_dssp             EEEEEEECSSSCEEEEBCCEEEEECSCCC--BCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             EEEEEEecCCcccccccCcEEEEecCCCC--CCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEe
Confidence            467888887654   23345677764321  2233332 222235678899999999985 53 23 444332220    


Q ss_pred             --EEEEcC---CEEEEEEccCCCCCCeEEEEEEEecceee-eeeccC------------------CCCCCeE-EecCCce
Q psy14060         89 --EMEHKG---KIQERVVDASELDDDGYYAITERKYYALS-DLSEQK------------------PAKPPVF-TKKIQPC  143 (283)
Q Consensus        89 --~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~------------------~~~~p~~-~~~~~~~  143 (283)
                        .....+   ....|.|.++..+| |.|+|.+.|..+.. ....+.                  +..+|.+ ...+...
T Consensus       171 ~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~  249 (444)
T 1igt_B          171 FPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIK  249 (444)
T ss_dssp             CCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHH
T ss_pred             cCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchh
Confidence              000111   13468999999999 99999999997742 111221                  2225554 3333333


Q ss_pred             e-ecCCCcEEEEEEEeeec----CCEEEEEeCCEecCCCCCeE-EEEe-C---CEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        144 R-AFEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPDFQ-IHTF-S---TKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       144 ~-~~~g~~v~l~C~~~g~p----~~~~~W~k~~~~~~~~~~~~-~~~~-~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      . +..|+.+.|.|.+.|.+    .+.+.|+|++..+....... .... +   ..+.|.|.++..+|.|.|+|.|.|..+
T Consensus       250 ~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~  329 (444)
T 1igt_B          250 DVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  329 (444)
T ss_dssp             HHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             heeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC
Confidence            3 58899999999999984    36999999998876432211 1111 1   234799999999999999999999988


Q ss_pred             eeEEEEEEEE--EeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEec
Q psy14060        214 KAKCSANLVV--EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSD  278 (283)
Q Consensus       214 ~~~~~~~l~v--~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~  278 (283)
                      .......+.+  ...        .+|.+...+.......+..++|.|.+.|. |.+ .|.|++||..+.
T Consensus       330 ~~~~~~~v~~~~~~~--------~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          330 PAPIERTISKPKGSV--------RAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             SSCEEEEEECCCCCC--------BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCceEEEEeccCCCC--------CCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            7633333322  111        46766554433222234459999999994 555 899999999874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.91  E-value=1.3e-23  Score=182.13  Aligned_cols=208  Identities=10%  Similarity=0.081  Sum_probs=144.9

Q ss_pred             eeecCcEEEEEEEccCccc----e-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDKEI----V-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i----~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|+.++|.|.+.+.+..    . .|..                    ...++.+...+....|.|.+++.+|+|.|+|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   92 (438)
T 1qgc_4           13 VSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYC   92 (438)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEE
Confidence            6678899999999988741    2 3332                    1346666666678899999999999999999


Q ss_pred             EEEeccee--e--eeecc-CCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCe--EEEEe
Q psy14060        115 TERKYYAL--S--DLSEQ-KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDF--QIHTF  185 (283)
Q Consensus       115 ~a~n~~~~--~--~~~~~-~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~--~~~~~  185 (283)
                      .+.|..+.  .  ....+ ....+|.+...........|+.+.|.|.+.+ .|.+ .+.|+|++..+......  .....
T Consensus        93 ~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~  172 (438)
T 1qgc_4           93 QQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS  172 (438)
T ss_dssp             EECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCT
T ss_pred             EEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccC
Confidence            99988652  1  11122 2223666665444334456889999999987 5777 89999999887654111  11000


Q ss_pred             --CC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE
Q psy14060        186 --ST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI  260 (283)
Q Consensus       186 --~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~  260 (283)
                        +.   .+.|.|.++..+|+|.|+|.|.|..+.......  +...        .++.....+....+.+|+.+.|.|.+
T Consensus       173 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~v~~G~~v~L~C~~  242 (438)
T 1qgc_4          173 KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS--FNRN--------ECEVMLVESGGGLVKPGGSLKLSCTA  242 (438)
T ss_dssp             TTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEE--EETT--------C-CCEEEEECCEEECTTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecc--cccc--------cceeEEecCCceEEecCCcEEEEEEE
Confidence              11   347999999999999999999999877533333  3221        12333444567789999999999999


Q ss_pred             EeeC--CCeeEEeeC--CEEe
Q psy14060        261 SATK--PLDVYWLKV--SSLS  277 (283)
Q Consensus       261 ~g~p--~~~v~W~~~--g~~l  277 (283)
                      .|.|  .+.+.|+++  |+.+
T Consensus       243 ~g~p~~~~~v~W~k~~~g~~~  263 (438)
T 1qgc_4          243 SGFIFNRCAMSWVRQTPEKRL  263 (438)
T ss_dssp             ESSCGGGSCEEEEEEETTTEE
T ss_pred             cccccCCcEEEEEECCCCCCc
Confidence            9988  568999997  6544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=1.8e-22  Score=155.28  Aligned_cols=165  Identities=18%  Similarity=0.122  Sum_probs=128.4

Q ss_pred             eee-cCcEEEEEEEccCcc--ce-EEeecCCCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCC
Q psy14060         60 IHT-AKSQQVQKEKKGDKE--IV-RKITATETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPP  134 (283)
Q Consensus        60 v~~-g~~v~l~C~~~g~~~--i~-~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p  134 (283)
                      +.. |+.+.|.|.+.+.+.  .. .|...+..... ........|.|.+++.+|+|.|+|.+.|.........+.+..+|
T Consensus        14 v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p   93 (190)
T 2wv3_A           14 IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAP   93 (190)
T ss_dssp             CCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCC
T ss_pred             EccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCC
Confidence            445 889999999998874  22 33332211100 00114678999999999999999999998223444556666788


Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe--CCEecC---CCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEE
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR--EDFPIT---SSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIA  208 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a  208 (283)
                      .+...+....+..|+.+.|.|.+.|.|.|.+.|++  ++..+.   ...++.+...+....|.|.++. .+|.|.|+|.|
T Consensus        94 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  173 (190)
T 2wv3_A           94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA  173 (190)
T ss_dssp             EEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEE
T ss_pred             cccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEE
Confidence            88888888889999999999999999999999999  777664   3456777776677789999999 79999999999


Q ss_pred             EeCCceeEEEEEEEEE
Q psy14060        209 ENRGGKAKCSANLVVE  224 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~  224 (283)
                      .|..|.....+.|.|.
T Consensus       174 ~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          174 TNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECSSCEEEEEEEEEEE
T ss_pred             EecCCcceeEEEEEEE
Confidence            9999998888888775

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.91  E-value=3.3e-26  Score=211.71  Aligned_cols=247  Identities=11%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             eEEEEEcCCeee--eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccc--eEEeecC-----------
Q psy14060         21 KSRTASSDRSGV--STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEI--VRKITAT-----------   85 (283)
Q Consensus        21 ~~~~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i--~~~~~~~-----------   85 (283)
                      +.|.|+|..|..  +..+.|.|..++....... . .....+.+|+.++|.|.+.|.|..  ..|....           
T Consensus       396 Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~-~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~  473 (772)
T 3v2a_R          396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL-I-SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA  473 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEECCcCeEEEEEEEEEEecCCccccccc-C-CCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCcccccccccc
Confidence            788999998876  4456666665544221111 1 011237788899999999998832  2333210           


Q ss_pred             ----------------------------CCEEEEE--cCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCC
Q psy14060         86 ----------------------------ETTEMEH--KGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPP  134 (283)
Q Consensus        86 ----------------------------~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p  134 (283)
                                                  .+..+..  ......|.|.++  +|+|.|+|.|.|..+. .....+.+..+|
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  551 (772)
T 3v2a_R          474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGP  551 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCc
Confidence                                        0011101  112356777776  7999999999999884 334455565566


Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE--------------------EEeCCEEEEEEc
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--------------------HTFSTKSILIMR  194 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~--------------------~~~~~~~~l~i~  194 (283)
                      .+...+. ..+.+|+.+.|.|.+.+.|.+.+.|+|++..+........                    ........|.|.
T Consensus       552 ~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  630 (772)
T 3v2a_R          552 EITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK  630 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEEC
Confidence            6655443 4577899999999999999999999999876543211111                    111123459999


Q ss_pred             CCCCCCCEEEEEEEEeCCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEee
Q psy14060        195 QVFMEDSGVFAVIAENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK  272 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~  272 (283)
                      ++..+|+|.|+|.|.|..+...  ....+.|...        .+|.|...+....+.+|+.+.|.|.+.|.|.|.|.|++
T Consensus       631 ~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~--------~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k  702 (772)
T 3v2a_R          631 NASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--------VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK  702 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc--------CCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEE
Confidence            9999999999999999655433  2345555432        47888887777889999999999999999999999999


Q ss_pred             CCEEecCC
Q psy14060        273 VSSLSDVK  280 (283)
Q Consensus       273 ~g~~l~~~  280 (283)
                      ||+.+...
T Consensus       703 ~g~~l~~~  710 (772)
T 3v2a_R          703 DNETLVED  710 (772)
T ss_dssp             --------
T ss_pred             CCeECcCC
Confidence            99988764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.91  E-value=6.4e-24  Score=177.35  Aligned_cols=206  Identities=13%  Similarity=0.013  Sum_probs=146.9

Q ss_pred             eeeecCcEEEEEEEccC----ccce-EEeec-----------------------CCCEEEE-EcCCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGD----KEIV-RKITA-----------------------TETTEME-HKGKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~----~~i~-~~~~~-----------------------~~~~~~~-~~~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|+.++|.|.+.+.    +... .|...                       ..++.+. .......|.|.+++.+|+
T Consensus        25 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~  104 (331)
T 3u83_A           25 YGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDE  104 (331)
T ss_dssp             EEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGC
T ss_pred             EEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccC
Confidence            47778899999999886    2111 33321                       1333322 122345799999999999


Q ss_pred             eEEEEE-EEecce-eeeeeccCCCCCCeEEe--cCCceeecCC---CcEEEEEE-EeeecCCEEEEEeCCEecC------
Q psy14060        110 GYYAIT-ERKYYA-LSDLSEQKPAKPPVFTK--KIQPCRAFEQ---DQARFEVE-FDGDPLPTIKWFREDFPIT------  175 (283)
Q Consensus       110 G~Y~C~-a~n~~~-~~~~~~~~~~~~p~~~~--~~~~~~~~~g---~~v~l~C~-~~g~p~~~~~W~k~~~~~~------  175 (283)
                      |.|+|. +.+..+ ......+.+..+|.+..  ......+..|   +.+.|.|. ..+.|.+.+.|++++....      
T Consensus       105 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~  184 (331)
T 3u83_A          105 GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR  184 (331)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEE
T ss_pred             cEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeE
Confidence            999997 555444 23334455555666533  4555677888   77999998 7888999999999532111      


Q ss_pred             -CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCe
Q psy14060        176 -SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQL  253 (283)
Q Consensus       176 -~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~  253 (283)
                       ....+.+     ...|.|..+..+|.|.|+|.+.|..+.....+.|.|..          +|.+.. .+....+.+|+.
T Consensus       185 ~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~----------~P~~~~~~~~~~~~~~g~~  249 (331)
T 3u83_A          185 NPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY----------EPEVTIEGFDGNWYLQRMD  249 (331)
T ss_dssp             CTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE----------EEEEEEECCCSCCBTTCCC
T ss_pred             CCCCcEEE-----EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec----------CCeEEEecCCCceEeCCCe
Confidence             1111111     24689999999999999999999999888888888875          455554 344556889999


Q ss_pred             EEEEEEEEeeCCCe-eEEeeCCEEecC
Q psy14060        254 ARFDAKISATKPLD-VYWLKVSSLSDV  279 (283)
Q Consensus       254 v~L~C~~~g~p~~~-v~W~~~g~~l~~  279 (283)
                      +.|.|.+.|.|.|. +.|+++|..+..
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~  276 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLNGSLPK  276 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCT
T ss_pred             EEEEEeCcCCCCCCEEEEEECCCcccc
Confidence            99999999999998 999999987654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.91  E-value=1.1e-22  Score=157.20  Aligned_cols=166  Identities=17%  Similarity=0.281  Sum_probs=128.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EE------ee-cCCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RK------IT-ATETTEME-HKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQ  128 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~------~~-~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~  128 (283)
                      .+.+|+.+.|.|.+.|.|... .|      +. ...++.+. ..++...|.|.+++.+|+|.|+|.+.|..+. .....+
T Consensus        15 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l   94 (197)
T 2j8h_A           15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL   94 (197)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEE
Confidence            467788999999999987332 22      22 22355544 3456779999999999999999999998774 333334


Q ss_pred             CCCCCCeEE-----ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC-CCCCCCE
Q psy14060        129 KPAKPPVFT-----KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ-VFMEDSG  202 (283)
Q Consensus       129 ~~~~~p~~~-----~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G  202 (283)
                      .+..+|.+.     ..+....+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+........|.|.+ +..+|.|
T Consensus        95 ~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G  174 (197)
T 2j8h_A           95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG  174 (197)
T ss_dssp             EEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCE
T ss_pred             EEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCE
Confidence            443333332     2224457888999999999999999999999999998877777777777778899999 9999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEE
Q psy14060        203 VFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      .|+|.|.|..|.....+.|.|.
T Consensus       175 ~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          175 FYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCcEeEEEEEEEe
Confidence            9999999999998888888775

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.91  E-value=6e-25  Score=184.30  Aligned_cols=221  Identities=12%  Similarity=0.109  Sum_probs=155.1

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEc-------cCccce-EEe--------ecCCCEEEEEcCCEEEEEEccCCCCCCeE
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKK-------GDKEIV-RKI--------TATETTEMEHKGKIQERVVDASELDDDGY  111 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~-------g~~~i~-~~~--------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  111 (283)
                      .|.+...+.. .+.+|+.+.|.|.+.       +.|... .|.        ......++...+  ..|.|.+++.+|+|.
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSGT   95 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEET--TEEEESSBCTTCCEE
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeC--CeEEECCCCcccCEE
Confidence            3444433322 467788999999998       776322 222        111122222222  379999999999999


Q ss_pred             EEEEEEeccee-eeeeccCCCCCCeEE--ecCCceeecCCCcEEEEEE-----EeeecCCEEEEEeCCEecCCC-CCeEE
Q psy14060        112 YAITERKYYAL-SDLSEQKPAKPPVFT--KKIQPCRAFEQDQARFEVE-----FDGDPLPTIKWFREDFPITSS-PDFQI  182 (283)
Q Consensus       112 Y~C~a~n~~~~-~~~~~~~~~~~p~~~--~~~~~~~~~~g~~v~l~C~-----~~g~p~~~~~W~k~~~~~~~~-~~~~~  182 (283)
                      |+|.+.|..+. .....+.+..++...  .......+..|+.+.|.|.     +.+.|.+.+.|++++..+... .++.+
T Consensus        96 Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~  175 (339)
T 3o4o_C           96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS  175 (339)
T ss_dssp             EECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE
T ss_pred             EEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE
Confidence            99999998773 223334333333211  1223347789999999999     788899999999999988654 33332


Q ss_pred             EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc----eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEE
Q psy14060        183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGG----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA  258 (283)
Q Consensus       183 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C  258 (283)
                      .  .....|.|.++..+|.|.|+|.+.|..|    .....+.|.|....     ...+|.+...+....+..|+.+.|.|
T Consensus       176 ~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~-----~~~~P~i~~~~~~~~v~~G~~v~L~C  248 (339)
T 3o4o_C          176 V--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK-----EETIPVIISPLKTISASLGSRLTIPC  248 (339)
T ss_dssp             C--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC-----CCCCCEECCCSCCCCCCCCSCCCCCC
T ss_pred             c--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC-----CCCCCEEecCCceeEeccCCCEEEEE
Confidence            2  2334799999999999999999999877    45666777777531     11367777776777889999999999


Q ss_pred             EE---EeeC-CCeeEEeeCCEEec
Q psy14060        259 KI---SATK-PLDVYWLKVSSLSD  278 (283)
Q Consensus       259 ~~---~g~p-~~~v~W~~~g~~l~  278 (283)
                      .+   .|.| .+.+.|++||..+.
T Consensus       249 ~~~~~~g~P~~~~v~W~~~g~~~~  272 (339)
T 3o4o_C          249 KVFLGTGTPLTTMLWWTANDTHIE  272 (339)
T ss_dssp             CEEESSSCCSSCEEEEESSSSCSS
T ss_pred             EEECCCCCCCCceEEEEECCeecc
Confidence            99   8888 77999999998764

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=8.3e-24  Score=164.57  Aligned_cols=159  Identities=10%  Similarity=0.040  Sum_probs=116.7

Q ss_pred             eeeecCcEEEEEE---EccCccce-EEeec-----------------------CCCEEEEEcCCEEEEEEccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKE---KKGDKEIV-RKITA-----------------------TETTEMEHKGKIQERVVDASELDDDGY  111 (283)
Q Consensus        59 ~v~~g~~v~l~C~---~~g~~~i~-~~~~~-----------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+.+|+.++|.|.   +.+.|++. .|...                       ..++.+....+...|.|.+++.+|+|.
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   83 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN   83 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeE
Confidence            3678999999995   55666332 33221                       223444455678899999999999999


Q ss_pred             EEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC----CCCeEEEEeC
Q psy14060        112 YAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS----SPDFQIHTFS  186 (283)
Q Consensus       112 Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~----~~~~~~~~~~  186 (283)
                      |+|.+.|..+. .....+.+..||.+...+....+.+|+.+.|.|.+.|.|.|.++|++++..+..    ..++.+...+
T Consensus        84 Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g  163 (203)
T 4fa8_A           84 YLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG  163 (203)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTS
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCC
Confidence            99999998884 334455566677777777777889999999999999999999999987655432    2344444445


Q ss_pred             CEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       187 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      ....+.+.++..+|+|.|+|.|.|..|....
T Consensus       164 ~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          164 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            5556777889999999999999999998764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.2e-22  Score=156.68  Aligned_cols=167  Identities=17%  Similarity=0.282  Sum_probs=133.7

Q ss_pred             eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP  130 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~  130 (283)
                      .+.+|+.+.|.|.+.|.|.  +.     ..+....++.+...+....|.|.+++.+|+|.|+|.+.|..+. .....+.+
T Consensus        18 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v   97 (197)
T 3lcy_A           18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL   97 (197)
T ss_dssp             EEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEE
Confidence            4677889999999988873  32     3445567778777778889999999999999999999988763 22333334


Q ss_pred             CCCCeEEec---CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC-CCCEEEEE
Q psy14060        131 AKPPVFTKK---IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM-EDSGVFAV  206 (283)
Q Consensus       131 ~~~p~~~~~---~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C  206 (283)
                      ..+|.+...   .....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++.. +|.|.|+|
T Consensus        98 ~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  177 (197)
T 3lcy_A           98 QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV  177 (197)
T ss_dssp             EEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEE
T ss_pred             EcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEE
Confidence            334433321   24456788999999999999999999999999999887788887777778899999995 89999999


Q ss_pred             EEEeCCceeEEEEEEEEEe
Q psy14060        207 IAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.|..|.....+.|.|.+
T Consensus       178 ~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          178 QLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEECSSCEEEEEEEEEEEC
T ss_pred             EEEcCcCceEEEEEEEEec
Confidence            9999999998888888764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.90  E-value=4.9e-23  Score=175.78  Aligned_cols=199  Identities=16%  Similarity=0.178  Sum_probs=144.0

Q ss_pred             ceEEEEEcCCeeeee---eeEEEEeCCC-CCCCCCceeeecC--CeeeecCcEEEEEEEccCccce-EEeecCC-----C
Q psy14060         20 LKSRTASSDRSGVST---EETKIIDGRK-VSVPEPSASGVHG--KEIHTAKSQQVQKEKKGDKEIV-RKITATE-----T   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~---~~~l~v~~~~-~~~~~p~~~~~~~--~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~-----~   87 (283)
                      .+.|.|+|..|....   ...+.+.... .....|.+.....  ..+.+|+.+.|.|.+.|.|... .|.....     .
T Consensus       171 ~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~  250 (384)
T 3kld_A          171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK  250 (384)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT
T ss_pred             eEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc
Confidence            367899998776421   1223332110 1111222222111  1356688999999999998433 4443211     1


Q ss_pred             EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEE
Q psy14060         88 TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK  166 (283)
Q Consensus        88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~  166 (283)
                      ...  ......|.|.+++.+|+|.|+|.|.|..|. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.
T Consensus       251 ~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~  328 (384)
T 3kld_A          251 ARR--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYR  328 (384)
T ss_dssp             CEE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEE
T ss_pred             cee--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEE
Confidence            121  123457999999999999999999999884 33445566668888888888899999999999999999999999


Q ss_pred             EEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        167 WFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       167 W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      |+|++..+....++.+.  .  ..|.|.++..+|+|.|+|.|.|..|...+++.|.|.
T Consensus       329 W~k~g~~l~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          329 WLKNGDPLLTRDRIQIE--Q--GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEETTEECCCBTTEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEECCEECCCCccEEEe--C--CEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            99999998776666542  2  269999999999999999999999999999999875

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=1.5e-23  Score=176.39  Aligned_cols=213  Identities=11%  Similarity=0.120  Sum_probs=136.4

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEeec-------------------------CCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKITA-------------------------TETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~~-------------------------~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|+.++|.|.+.|.+    .+ .|...                         ..|+.+..+  ++...|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (344)
T 1za6_B           11 VVKPGASVKISCKASGYTFTDHAI-HWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSE   89 (344)
T ss_dssp             EECTTCCEEEEEEEESSCTTSSCE-EEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEcCCccccccEE-EEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            366788999999998863    23 23211                         245555432  45789999999999


Q ss_pred             CCeEEEEEEEeccee-eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCC----
Q psy14060        108 DDGYYAITERKYYAL-SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITS----  176 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~-~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~----  176 (283)
                      |+|.|+|.+.|..+. .....+.+    ..+|.+........+..|+.+.|.|.+.|. |. +.+.|++++..+..    
T Consensus        90 D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  169 (344)
T 1za6_B           90 DTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP  169 (344)
T ss_dssp             GCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECC
T ss_pred             cCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECC
Confidence            999999999885431 11112222    235555544434456789999999999987 54 79999999875421    


Q ss_pred             -----CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEec------------cCC--CCCCCCCC
Q psy14060        177 -----SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK------------RQG--GRGGVVPP  237 (283)
Q Consensus       177 -----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~------------~~~--~~~~~~~p  237 (283)
                           ...+..     .+.|.|..+..+| |.|+|.|.|..+.......+.+...            ...  ......+|
T Consensus       170 ~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P  243 (344)
T 1za6_B          170 AVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP  243 (344)
T ss_dssp             CEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCC
T ss_pred             CeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC
Confidence                 111111     2368999888878 9999999999876543333221000            000  00011356


Q ss_pred             eEEecCCceEEcCCCeEEEEEEEEeeCC--CeeEEeeCCEEec
Q psy14060        238 SFLTTISSAVINVGQLARFDAKISATKP--LDVYWLKVSSLSD  278 (283)
Q Consensus       238 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~g~~l~  278 (283)
                      .+...+.......|..+.|.|.+.|.++  +.+.|++||+.+.
T Consensus       244 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  286 (344)
T 1za6_B          244 QVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  286 (344)
T ss_dssp             EEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCC
T ss_pred             EEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECC
Confidence            6655433322335667999999999643  4899999998775

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.90  E-value=2.3e-24  Score=178.40  Aligned_cols=211  Identities=9%  Similarity=0.008  Sum_probs=139.8

Q ss_pred             eeeecCcEEEEEEEccCccce--EEeecC-----------------------CCEEEE-EcCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV--RKITAT-----------------------ETTEME-HKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~--~~~~~~-----------------------~~~~~~-~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.|.+.+.+...  .|....                       .++.+. ......+|.|.+++.+|+|.|
T Consensus        10 tv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y   89 (308)
T 4fom_A           10 TAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKY   89 (308)
T ss_dssp             EEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEE
T ss_pred             EEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEE
Confidence            366788999999987654221  333211                       111111 011345799999999999999


Q ss_pred             EEEEEecce-e-eeeeccCCCCCCe--EEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEE-EEeC
Q psy14060        113 AITERKYYA-L-SDLSEQKPAKPPV--FTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQI-HTFS  186 (283)
Q Consensus       113 ~C~a~n~~~-~-~~~~~~~~~~~p~--~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~-~~~~  186 (283)
                      +|.+.|... . .....+.+..+|.  +...+.......|+.+.|.|.+ .|.|.+.++|++++..+........ ....
T Consensus        90 ~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~  169 (308)
T 4fom_A           90 ICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETAT  169 (308)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEE
T ss_pred             EEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeeccc
Confidence            999988633 2 2222233333333  2334455556678899999986 5789999999999887643210000 0001


Q ss_pred             CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE--EEEEEEeccCCCCCCCCCCeEEecC-CceEEcCCCeEEEEEEEEee
Q psy14060        187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCS--ANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       187 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~  263 (283)
                      ..+.|.|..+...|.|.|+|.|.|..+.....  +.|.|..          +|.+...+ ....+..|+.+.|.|.+.|.
T Consensus       170 ~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~----------~P~~~~~~~~~~~~~~g~~v~l~C~~~g~  239 (308)
T 4fom_A          170 IISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY----------APEVSVTGYDGNWFVGRKGVNLKCNADAN  239 (308)
T ss_dssp             EEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE----------EEEECCBCCCSCEETTCCSCEEECCEEEE
T ss_pred             ccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec----------CCeeEEcccceeeeeccccEEEEEEEecC
Confidence            12469999999999999999999987665444  4444443          56555443 34567889999999999999


Q ss_pred             CCC-eeEEeeCCEEecC
Q psy14060        264 KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       264 p~~-~v~W~~~g~~l~~  279 (283)
                      |.| .+.|+|+|..+..
T Consensus       240 P~p~~v~W~k~~~~~~~  256 (308)
T 4fom_A          240 PPPFKSVWSRLDGQWPD  256 (308)
T ss_dssp             SCEEEEECCBSSSCCCS
T ss_pred             CCCcEEEEEECCeECCC
Confidence            998 6999999877643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=9.6e-22  Score=153.61  Aligned_cols=163  Identities=13%  Similarity=0.161  Sum_probs=129.4

Q ss_pred             cCcEEEEEEEccCc---cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee-eeccCCC--
Q psy14060         63 AKSQQVQKEKKGDK---EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD-LSEQKPA--  131 (283)
Q Consensus        63 g~~v~l~C~~~g~~---~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-~~~~~~~--  131 (283)
                      ++.+.|.|.+.|.+   .+.     ..+....++.+...+....|.|.+++.+|+|.|+|.+.|..+... ...+.+.  
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~   96 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY   96 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeec
Confidence            45789999998853   333     445556778877777888999999999999999999999876422 2222221  


Q ss_pred             -------------------CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEE
Q psy14060        132 -------------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSIL  191 (283)
Q Consensus       132 -------------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l  191 (283)
                                         .++.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L  176 (212)
T 2r15_A           97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYF  176 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEE
T ss_pred             cchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEE
Confidence                               233333345567889999999999999999999999999999988777777665 566789


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus       177 ~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            9999999999999999999999988888888763

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.90  E-value=6.9e-22  Score=173.32  Aligned_cols=250  Identities=10%  Similarity=0.019  Sum_probs=152.0

Q ss_pred             ceEEEEEcCCee------eeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccC-cc-c-e-EEeecCCCEE
Q psy14060         20 LKSRTASSDRSG------VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGD-KE-I-V-RKITATETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~------~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~-~~-i-~-~~~~~~~~~~   89 (283)
                      .+.|.|.|..|.      ......|.|....  ...|.+.......+..|+.+.|.|.+.|. |. . . .|........
T Consensus        94 ~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~  171 (475)
T 1iga_A           94 VYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--PTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVT  171 (475)
T ss_pred             EEEEEEeccCCCccceeeecCceEEEeccCC--CcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccc
Confidence            356888887652      2334566666421  12333332222224578899999999987 43 2 3 3432221100


Q ss_pred             E------E--EcCC---EEEEEEccCCCCCCeEEEEEEEecceeeeeeccC--C-----------------C-CCCeE-E
Q psy14060         90 M------E--HKGK---IQERVVDASELDDDGYYAITERKYYALSDLSEQK--P-----------------A-KPPVF-T  137 (283)
Q Consensus        90 ~------~--~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~--~-----------------~-~~p~~-~  137 (283)
                      .      .  ..+.   ...|.|.++..+|+|.|+|.+.|..+......+.  +                 . .+|.+ .
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~  251 (475)
T 1iga_A          172 ARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSL  251 (475)
T ss_pred             eEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEE
Confidence            0      0  1111   2358888988899999999999987632211111  1                 0 24443 3


Q ss_pred             ecCCceeecCCCcEEEEEEEeeecC---CEEEEEeCCEecCCCCCe-EEEE-eC---CEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDF-QIHT-FS---TKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~~~~~~~~~~~-~~~~-~~---~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+....+..|+.+.|.|.+.|.++   +.+.| + +..+...... .... .+   ....|.|.++..+|.|.|+|.|.
T Consensus       252 ~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~  329 (475)
T 1iga_A          252 HRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAA  329 (475)
T ss_pred             cCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEE
Confidence            3333334688999999999998644   58999 4 4333221111 0110 11   23469999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCc-eEEcCCCeEEEEEEEEeeCC--CeeEEeeCCEEecCC
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISATKP--LDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~--~~v~W~~~g~~l~~~  280 (283)
                      |..+.......+.+...       ..+|.+...+.. ..+..|+.+.|.|.+.|.++  +.|.|++||+.+...
T Consensus       330 n~~~~~~~~~~v~~~~~-------~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          330 YPESKTPLTATLSKSGN-------TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             cCCCCCceEEEeecCCC-------CCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            99887654444433111       146666554433 34778999999999998633  489999999988643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=1.5e-21  Score=152.79  Aligned_cols=167  Identities=17%  Similarity=0.157  Sum_probs=123.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EEe------ecCCCEEEE-EcCCEEEEEEccC-CCCCCeEEEEEEEecceee-eeecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKI------TATETTEME-HKGKIQERVVDAS-ELDDDGYYAITERKYYALS-DLSEQ  128 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~------~~~~~~~~~-~~~~~~~L~i~~~-~~~D~G~Y~C~a~n~~~~~-~~~~~  128 (283)
                      .+.+|+.+.|.|.+.|.|... .|.      ......... ..+....|.|.++ +.+|+|.|+|.+.|..+.. ....+
T Consensus        17 ~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l   96 (212)
T 2yd6_A           17 TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL   96 (212)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEE
Confidence            367788999999999887332 222      222222222 2235678999999 5999999999999988742 22222


Q ss_pred             CC-------CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC---CCeEEEEeCCEEEEEEcCCCC
Q psy14060        129 KP-------AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS---PDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       129 ~~-------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      .+       ...|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+...   .++..........|.|.++..
T Consensus        97 ~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~  176 (212)
T 2yd6_A           97 TVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE  176 (212)
T ss_dssp             EEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCG
T ss_pred             EEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCc
Confidence            22       22367777777788899999999999999999999999999988753   355555556678899999999


Q ss_pred             CCCEEEEEEEEeCCceeEEE-EEEEEEe
Q psy14060        199 EDSGVFAVIAENRGGKAKCS-ANLVVEE  225 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~~~-~~l~v~~  225 (283)
                      +|.|.|+|.|.|..|...+. +.|.+..
T Consensus       177 ~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          177 SDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccCEEEEEEEECCCCccccccccEEEEe
Confidence            99999999999999986544 6777763

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=1.3e-23  Score=179.59  Aligned_cols=214  Identities=12%  Similarity=0.090  Sum_probs=141.8

Q ss_pred             eeeecCcEEEEEEEcc-Cccce-EEeecCCCE-----EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee--eccC
Q psy14060         59 EIHTAKSQQVQKEKKG-DKEIV-RKITATETT-----EMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL--SEQK  129 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g-~~~i~-~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~--~~~~  129 (283)
                      .+.+|+.++|.|.+.| .|... .|...+...     ..........|.|.+++.+|+|.|+|.+.|..+....  ..+.
T Consensus        17 ~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~   96 (395)
T 1bih_A           17 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR   96 (395)
T ss_dssp             EEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEE
Confidence            3677889999999998 55333 444322211     1112223457999999999999999999998774321  1222


Q ss_pred             C--CCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCC---EecCC----CCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        130 P--AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFRED---FPITS----SPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       130 ~--~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~---~~~~~----~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      +  ...|.+  .+....+..|+.+.|.|.+ .+.|.+.+.|++++   .....    ..++....   ...|.|.++..+
T Consensus        97 v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~  171 (395)
T 1bih_A           97 KTYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKE  171 (395)
T ss_dssp             EEEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGG
T ss_pred             EEEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcC---CCcEEEEEEeec
Confidence            1  112222  2345667899999999996 78899999999986   22111    22333322   225999999999


Q ss_pred             CCE---EEEEEEEeCCceeEEEEEEEEEe---ccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060        200 DSG---VFAVIAENRGGKAKCSANLVVEE---KRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKV  273 (283)
Q Consensus       200 d~G---~Y~C~a~n~~g~~~~~~~l~v~~---~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~  273 (283)
                      |.|   .|+|.+.|..+............   ..........+|.+  .+....+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus       172 d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~  249 (395)
T 1bih_A          172 DVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN  249 (395)
T ss_dssp             GCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEET
T ss_pred             cCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEEC
Confidence            999   99999999988754433222111   10000000113343  34667899999999999999999999999999


Q ss_pred             CEEecC
Q psy14060        274 SSLSDV  279 (283)
Q Consensus       274 g~~l~~  279 (283)
                      |+.+..
T Consensus       250 g~~~~~  255 (395)
T 1bih_A          250 GKDVNG  255 (395)
T ss_dssp             TEECCC
T ss_pred             CEEcCC
Confidence            998864

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.90  E-value=2.7e-22  Score=164.41  Aligned_cols=198  Identities=16%  Similarity=0.133  Sum_probs=142.9

Q ss_pred             ceEEEEEcCCee-eeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeecC--------CCEE
Q psy14060         20 LKSRTASSDRSG-VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITAT--------ETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~--------~~~~   89 (283)
                      .+.|.|.|..|. .+....|.|..++.....|.     ...+.+|+.+.|.|.+.|.|... .|...+        .++.
T Consensus        76 ~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  150 (291)
T 1qz1_A           76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT-----PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI  150 (291)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEECCSEEEECCS-----SEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred             EEEEEEEcCCCCeeEEEEEEEeeccccccCCCC-----cccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEE
Confidence            578999999864 46777888876543222221     12467788999999999988433 333322        2222


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEecce-e--eeeeccCCCCCCeEEecCC--ceeecCCCcEEEEEEEeeecCCE
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYYA-L--SDLSEQKPAKPPVFTKKIQ--PCRAFEQDQARFEVEFDGDPLPT  164 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~--~~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~~~  164 (283)
                      ..   ....|.|.+++.+|+|.|+|.+.|..+ .  .....+.+..+|.+.....  ...+..|+.+.|.|.+.|.|.|.
T Consensus       151 ~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~  227 (291)
T 1qz1_A          151 VL---SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT  227 (291)
T ss_dssp             EC---TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE
T ss_pred             Ec---cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCc
Confidence            22   224699999999999999999998754 2  2233344445666655433  44678899999999999999999


Q ss_pred             EEEEeCCEecCCCCC--eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        165 IKWFREDFPITSSPD--FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       165 ~~W~k~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +.|++++..+.....  ...........|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       228 i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          228 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999998876431  1233334456799999999999999999999999998888888864

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.7e-22  Score=164.87  Aligned_cols=197  Identities=13%  Similarity=0.151  Sum_probs=143.8

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCC-CCCceeeecCC-eeeecCcEEEEEEEccCccce-EEeecC---------CC
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSV-PEPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-RKITAT---------ET   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~-~~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-~~~~~~---------~~   87 (283)
                      .+.|.|+|..|..+....|.|...+... ..|.+...... .+..|+.+.|.|.+.|.|... .|...+         .+
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~  157 (304)
T 2yd9_A           78 VYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR  157 (304)
T ss_dssp             EEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTS
T ss_pred             EEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcce
Confidence            5789999999999999999998764322 22444433322 366688999999999988433 333221         12


Q ss_pred             EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee----eeccCC-CCCCeEEecCCceeecCCCcEEEEEEEeeecC
Q psy14060         88 TEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD----LSEQKP-AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL  162 (283)
Q Consensus        88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~----~~~~~~-~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~  162 (283)
                      +...   ....|.|.+++.+|+|.|+|.+.|..+...    ...+.+ ..+|.+...+....+..|+.+.|.|.+.|.|.
T Consensus       158 ~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~  234 (304)
T 2yd9_A          158 IKQL---RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM  234 (304)
T ss_dssp             EEEC---TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred             EEeC---CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence            2222   223799999999999999999999987432    222322 35777777777778899999999999999999


Q ss_pred             CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       163 ~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.+.|++++..+.....+.    .....|.+.++  +|+|.|+|.|.|..|.....+.|.|..
T Consensus       235 p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          235 PYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             CEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             CEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            9999999999887654321    23445777766  699999999999999999999998885

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.90  E-value=8.2e-24  Score=179.20  Aligned_cols=190  Identities=12%  Similarity=0.100  Sum_probs=138.7

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecCC--------------------CEEEEE---cCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITATE--------------------TTEMEH---KGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~--------------------~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|+.++|.|.+.|.|... .|...+.                    ++.+..   ......|.|.+++.+|+|.|+|.
T Consensus         6 ~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   85 (363)
T 1wio_A            6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (363)
T ss_dssp             EETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEE
T ss_pred             EeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEE
Confidence            66788999999998877332 4443322                    222111   22456799999999999999999


Q ss_pred             EEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC
Q psy14060        116 ERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       116 a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~  195 (283)
                      +.|..+...+....      +...+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.        .  ....|.|.+
T Consensus        86 ~~n~~~~~~l~V~~------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------~--~~~~L~i~~  148 (363)
T 1wio_A           86 VEDQKEEVQLLVFG------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------Q--GGKTLSVSQ  148 (363)
T ss_dssp             ETTEEEEEEEEEEE------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE--------E--ESSEEEECS
T ss_pred             EEECCCcEEEEEEe------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc--------c--cceEEEEee
Confidence            98886533222111      12222 2467899999999999888999999999875431        1  223699999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-----eCCCeeEE
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-----TKPLDVYW  270 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-----~p~~~v~W  270 (283)
                      +..+|+|.|+|.+.|..+.......+.|..          +|...   ....+.+|+.+.|.|.+.+     .|.|.+.|
T Consensus       149 v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~----------~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W  215 (363)
T 1wio_A          149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLA----------FQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW  215 (363)
T ss_dssp             BCGGGCEECEEEEEETTEEEEECCEECEEC----------CSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEE
T ss_pred             CChhcCCEEEEEEecCCCeEEEEEEEEEec----------CCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEE
Confidence            999999999999999877777667777764          22221   3457889999999998887     77889999


Q ss_pred             eeCCEEecC
Q psy14060        271 LKVSSLSDV  279 (283)
Q Consensus       271 ~~~g~~l~~  279 (283)
                      +++|..+..
T Consensus       216 ~~~g~~~~~  224 (363)
T 1wio_A          216 QAERASSSK  224 (363)
T ss_dssp             EESSCCCCC
T ss_pred             ecCCCCccc
Confidence            999987654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=164.36  Aligned_cols=196  Identities=16%  Similarity=0.167  Sum_probs=143.6

Q ss_pred             ceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeec--------CCCEE
Q psy14060         20 LKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA--------TETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~--------~~~~~   89 (283)
                      .+.|.|.|..|.. +....|.|..++.....+.     ...+.+|+.+.|.|.+.|.|... .|...        ..++.
T Consensus        74 ~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~-----~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  148 (291)
T 2wim_A           74 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVS-----PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA  148 (291)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEECCCBCCSCCC-----SEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEE
T ss_pred             EEEEEEecccCceEEEEEEEEecCCcceEeCCC-----ChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEE
Confidence            5789999998886 5667788877654333222     12367788999999999987332 33322        22333


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee---eeeeccCCCCCCeEEecCC--ceeecCCCcEEEEEEEeeecCCE
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYYAL---SDLSEQKPAKPPVFTKKIQ--PCRAFEQDQARFEVEFDGDPLPT  164 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~~~  164 (283)
                      +..   ...|.|.+++.+|+|.|+|.+.|..+.   .....+.+..+|.+.....  ...+..|+.+.|.|.+.|.|.|.
T Consensus       149 ~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  225 (291)
T 2wim_A          149 MLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA  225 (291)
T ss_dssp             ECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE
T ss_pred             Ecc---CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCe
Confidence            322   236999999999999999999987642   2222344445666554433  34677899999999999999999


Q ss_pred             EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        165 IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       165 ~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +.|++++..+....++.+.  .....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       226 v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          226 ISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             EEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             EEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            9999999998876665443  2345799999999999999999999999999999999886

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.89  E-value=5.4e-23  Score=166.64  Aligned_cols=191  Identities=10%  Similarity=0.026  Sum_probs=133.9

Q ss_pred             eeeecCcEEEEEEEcc-Cccc--e-EEeecCCCE--EEEEcCCEEEEEEcc---CCCCCCeE--EEEEEEeccee-eeee
Q psy14060         59 EIHTAKSQQVQKEKKG-DKEI--V-RKITATETT--EMEHKGKIQERVVDA---SELDDDGY--YAITERKYYAL-SDLS  126 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g-~~~i--~-~~~~~~~~~--~~~~~~~~~~L~i~~---~~~~D~G~--Y~C~a~n~~~~-~~~~  126 (283)
                      .+.+|+.++|.|.+.| .|..  . .|...+...  .+...+.  .|.+..   ++.+|+|.  |+|.+.|..+. ....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~   91 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ   91 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCcEEEE
Confidence            4788999999999998 6621  2 444332211  2223333  333433   37788885  99999999774 2333


Q ss_pred             ccCCCC--CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        127 EQKPAK--PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       127 ~~~~~~--~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      .+.+..  +|.+.  +....+.+|+.+.|.|.+.  |.+.+.|  +|..+....        ....|.|..+..+|.|.|
T Consensus        92 ~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~--------~~~~l~i~~~~~~~~g~Y  157 (265)
T 2oz4_A           92 TVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG--------PRAQLLLKATPEDNGRSF  157 (265)
T ss_dssp             EEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS--------SEECCEEECCGGGTTEEE
T ss_pred             EEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC--------CcEEEEEccccccCCceE
Confidence            344433  34443  3456678899999999998  8999999  777663321        234588899999999999


Q ss_pred             EEEEEeCC-ceeE---EEEEEEEEeccCCCCCCCCCCeEEec--CCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCE
Q psy14060        205 AVIAENRG-GKAK---CSANLVVEEKRQGGRGGVVPPSFLTT--ISSAVINVGQLARFDAKISATKPLDVYWLKVSS  275 (283)
Q Consensus       205 ~C~a~n~~-g~~~---~~~~l~v~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~  275 (283)
                      +|.+.|.. |...   ....|.|..          +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|+++|.
T Consensus       158 ~C~a~n~~~g~~~~~s~~~~l~V~~----------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          158 SCSATLEVAGQLIHKNQTRELRVLY----------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEEEEE----------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             EEEEEcCCCCCcccccccEEEEEEe----------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            99998544 6544   556777764          4554433  345688999999999999999999999999987

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.89  E-value=1.9e-22  Score=171.77  Aligned_cols=201  Identities=17%  Similarity=0.211  Sum_probs=146.5

Q ss_pred             ceEEEEEcCCeee-----eeeeEEEEeCCCCCCCCCceeeec--CCeeeecCcEEEEEEEccCccce-EEeecCCCEEEE
Q psy14060         20 LKSRTASSDRSGV-----STEETKIIDGRKVSVPEPSASGVH--GKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEME   91 (283)
Q Consensus        20 ~~~~~a~n~~g~~-----~~~~~l~v~~~~~~~~~p~~~~~~--~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~   91 (283)
                      .+.|.|.|..|..     +....|.+.........|.+....  ...+..|+.+.|.|.+.|.|... .|..........
T Consensus       172 ~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~  251 (382)
T 1cs6_A          172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK  251 (382)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC
T ss_pred             eEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE
Confidence            3678888877432     223455555432222233333211  22466788999999999988433 444333221111


Q ss_pred             EcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC
Q psy14060         92 HKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE  170 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~  170 (283)
                      .......|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++
T Consensus       252 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~  331 (382)
T 1cs6_A          252 WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD  331 (382)
T ss_dssp             CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEET
T ss_pred             EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEEC
Confidence            1223567999999999999999999999884 334455666688888888888899999999999999999999999999


Q ss_pred             CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +..+....++.+.  .  ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       332 g~~~~~~~~~~~~--~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          332 GQPLASQNRIEVS--G--GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             TEECCCCSSEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEECCCCceEEEE--C--CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9998876665542  2  269999999999999999999999999998888875

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.89  E-value=2.9e-21  Score=151.19  Aligned_cols=173  Identities=18%  Similarity=0.233  Sum_probs=129.4

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-------EEee-cCCCEEEEE-cCCEEEEEEccCCC-CCCeEEEEEEE
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-------RKIT-ATETTEMEH-KGKIQERVVDASEL-DDDGYYAITER  117 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-------~~~~-~~~~~~~~~-~~~~~~L~i~~~~~-~D~G~Y~C~a~  117 (283)
                      .|.+...+.. .+.+|+.+.|.|.+.|.|...       ..+. ...++.+.. .++...|.|.+++. +|+|.|+|.+.
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~   85 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE   85 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEE
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEE
Confidence            3444433333 477888999999999888332       2332 344555543 34568999999999 99999999999


Q ss_pred             eccee--eeeeccCCCC-------CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCC
Q psy14060        118 KYYAL--SDLSEQKPAK-------PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFST  187 (283)
Q Consensus       118 n~~~~--~~~~~~~~~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~  187 (283)
                      |..+.  .....+.+..       +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.  . 
T Consensus        86 n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~-  162 (212)
T 2yd1_A           86 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--D-  162 (212)
T ss_dssp             CSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE--T-
T ss_pred             eCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc--C-
Confidence            98764  2222232222       377777777788899999999999999999999999999988753 343322  2 


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEeCCceeEEE-EEEEEEe
Q psy14060        188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEE  225 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~  225 (283)
                       ..|.|.++..+|+|.|+|.|.|..|...+. +.|.|..
T Consensus       163 -~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          163 -GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             -TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence             269999999999999999999999998765 7888875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.89  E-value=1.2e-22  Score=177.16  Aligned_cols=218  Identities=9%  Similarity=0.050  Sum_probs=140.1

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|+.++|.|.+.+.+    .+ .|..                         ...|+.+..+  +....|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (457)
T 1hzh_H           11 VKKPGASVKVSCQASGYRFSNFVI-HWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (457)
T ss_dssp             EECTTCCEEECEEEESSCGGGSCE-EEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEecCccccCcEE-EEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcc
Confidence            366788999999998764    22 2221                         1245555432  45789999999999


Q ss_pred             CCeEEEEEEEecce-------------eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEE
Q psy14060        108 DDGYYAITERKYYA-------------LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWF  168 (283)
Q Consensus       108 D~G~Y~C~a~n~~~-------------~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~  168 (283)
                      |+|.|+|.+.|..+             ......+.+    ..+|.+........+..|+.+.|.|.+.|. |. +.+.|+
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  169 (457)
T 1hzh_H           90 DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  169 (457)
T ss_dssp             GCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEET
T ss_pred             cCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEE
Confidence            99999999988753             111112222    225555544444456789999999999986 64 799999


Q ss_pred             eCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccC-------CCCCCCCCC
Q psy14060        169 REDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ-------GGRGGVVPP  237 (283)
Q Consensus       169 k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------~~~~~~~~p  237 (283)
                      +++..+...........+.    .+.|.|.++..+| |.|+|.+.|..+.......+.+.....       ....-..+|
T Consensus       170 k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p  248 (457)
T 1hzh_H          170 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGP  248 (457)
T ss_dssp             TTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSC
T ss_pred             eCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCc
Confidence            9986542110001111111    2369999999999 999999999877655544444321100       000001245


Q ss_pred             eE-EecCCceE-EcCCCeEEEEEEEEeeCCC----eeEEeeCCEEec
Q psy14060        238 SF-LTTISSAV-INVGQLARFDAKISATKPL----DVYWLKVSSLSD  278 (283)
Q Consensus       238 ~~-~~~~~~~~-v~~g~~v~L~C~~~g~p~~----~v~W~~~g~~l~  278 (283)
                      .+ ...+.... +.+|+.+.|.|.+.|.|++    .|.|++||+.+.
T Consensus       249 ~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~  295 (457)
T 1hzh_H          249 SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH  295 (457)
T ss_dssp             EEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEEC
T ss_pred             eEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccc
Confidence            54 33333322 6789999999999997653    899999998874

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.89  E-value=6.2e-23  Score=170.16  Aligned_cols=201  Identities=13%  Similarity=0.154  Sum_probs=144.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEcc----------Cc--cce-----EEe
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKG----------DK--EIV-----RKI   82 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g----------~~--~i~-----~~~   82 (283)
                      .+.|.|+|..|..+....|.|...+.....+     ....+..|+.+.|.|.+.|          .|  .+.     ..+
T Consensus        75 ~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~-----~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~  149 (317)
T 2y25_A           75 IYEVILKDDRGKDKSRLKLVDEAFKELMMEV-----CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI  149 (317)
T ss_dssp             CEEEEEESSSCEEEEEECCSTHHHHHHHHHH-----HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBC
T ss_pred             EEEEEEECCCCcEEEEEEEEEecCccccccC-----CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEEC
Confidence            5789999999988777666555432110000     0111334455666665554          44  332     233


Q ss_pred             ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee-eeccC--------------------CCCCCeEEec-C
Q psy14060         83 TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD-LSEQK--------------------PAKPPVFTKK-I  140 (283)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-~~~~~--------------------~~~~p~~~~~-~  140 (283)
                      ....++.....+....|.|.+++.+|+|.|+|.+.|..+... ...+.                    ...+|.+... +
T Consensus       150 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  229 (317)
T 2y25_A          150 RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP  229 (317)
T ss_dssp             CCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCC
T ss_pred             CCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCC
Confidence            345667777777788899999999999999999999877322 11111                    1224445443 4


Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus       230 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  309 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF  309 (317)
T ss_dssp             SEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             ccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEE
Confidence            456889999999999999999999999999999987777777655 5667899999999999999999999999998888


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus       310 ~l~V~~  315 (317)
T 2y25_A          310 TVSVFI  315 (317)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            888874

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=5.1e-21  Score=147.70  Aligned_cols=158  Identities=13%  Similarity=0.200  Sum_probs=121.7

Q ss_pred             eeeecCcEEEEEEEc-cCcc--ce-----EEeecC--CCEEEEEcCC-------EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKK-GDKE--IV-----RKITAT--ETTEMEHKGK-------IQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~~--i~-----~~~~~~--~~~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.+.|.|.+. |.|.  +.     ..+...  .++.+.....       ...|.|.+++.+|+|.|+|.+.|..+
T Consensus        13 ~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   92 (195)
T 2c5d_C           13 TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ   92 (195)
T ss_dssp             EECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             EEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCC
Confidence            466788999999999 8873  32     222222  1233332221       57899999999999999999999876


Q ss_pred             e--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        122 L--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       122 ~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      .  .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.| .+.|++++..+......     .....|.|.++. 
T Consensus        93 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~-  166 (195)
T 2c5d_C           93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN-  166 (195)
T ss_dssp             EEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS-
T ss_pred             ceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc-
Confidence            4  22345666778888888888889999999999999999999 99999999988764432     344579999887 


Q ss_pred             CCCEEEEEEEEeCCceeE-EEEEEEE
Q psy14060        199 EDSGVFAVIAENRGGKAK-CSANLVV  223 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~-~~~~l~v  223 (283)
                       |+|.|+|.|.|..|... ..+.|.|
T Consensus       167 -d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          167 -KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             -SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -cCceEEEEEEcCCCceEEEEEEEEE
Confidence             78999999999999875 5777776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.89  E-value=2.8e-23  Score=192.09  Aligned_cols=236  Identities=17%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             ceEEEEEcCCeeeeee-eEEEEeCCCCCCCCCceeeecC--CeeeecCcEEEEEEEccCc--cce-EEeecCCC------
Q psy14060         20 LKSRTASSDRSGVSTE-ETKIIDGRKVSVPEPSASGVHG--KEIHTAKSQQVQKEKKGDK--EIV-RKITATET------   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~~~~--~~v~~g~~v~l~C~~~g~~--~i~-~~~~~~~~------   87 (283)
                      .+.|.|.+..+..... ..+.+...+    .+.+.....  ..+.+|+.+.|.|.+.+.+  .+. .|...+..      
T Consensus       197 ~Y~C~~~~~~~~~~s~~~~~~v~~~~----~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~  272 (772)
T 3v2a_R          197 MVFCEAKINDESYQSIMYIVVVVGYR----IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL  272 (772)
T ss_dssp             EEEEEEEETTEEEECCEEEEEEECCC----EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------C
T ss_pred             EEEEEEEECCceEEEEEEEEEEecCc----cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCcee
Confidence            4788888865544332 334443321    122222222  2477899999999999743  322 33322211      


Q ss_pred             EEE--------EEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecC---CceeecCCCcEEEEE
Q psy14060         88 TEM--------EHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKI---QPCRAFEQDQARFEV  155 (283)
Q Consensus        88 ~~~--------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C  155 (283)
                      ...        ........|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+....   ....+..|+.+.|.|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C  352 (772)
T 3v2a_R          273 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA  352 (772)
T ss_dssp             EEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------
T ss_pred             eeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEE
Confidence            110        01113568999999999999999999988763 333445555566544332   345688899999999


Q ss_pred             EEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE--EEEEEEeccCCCCCC
Q psy14060        156 EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS--ANLVVEEKRQGGRGG  233 (283)
Q Consensus       156 ~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~~~~~~~~  233 (283)
                      .+.+.|.+.+.|++++..+.....  +.   ....|.|.++..+|+|.|+|.+.|..|....+  +.|.|..        
T Consensus       353 ~~~~~p~~~v~W~~~g~~l~~~~~--~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~--------  419 (772)
T 3v2a_R          353 KYLGYPPPEIKWYKNGIPLESNHT--IK---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV--------  419 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeeeCCCeEEEEECCEeCCCCce--Ec---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec--------
Confidence            999999999999999988765322  11   23569999999999999999999998875443  4555543        


Q ss_pred             CCCCeEEecC---CceEEcCCCeEEEEEEEEeeCCCe-eEEeeCC
Q psy14060        234 VVPPSFLTTI---SSAVINVGQLARFDAKISATKPLD-VYWLKVS  274 (283)
Q Consensus       234 ~~~p~~~~~~---~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g  274 (283)
                        +|.+....   ....+.+|+.+.|.|.+.+.|.|. +.|+++|
T Consensus       420 --~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          420 --PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQL  462 (772)
T ss_dssp             ---------------------------------------------
T ss_pred             --CCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcC
Confidence              55553321   112478999999999999999996 9999974

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.89  E-value=1.3e-21  Score=160.13  Aligned_cols=198  Identities=13%  Similarity=0.073  Sum_probs=139.5

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeee-cCCeeeecCcEEEEEEEccCcc---ce------EEeecCCCEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGV-HGKEIHTAKSQQVQKEKKGDKE---IV------RKITATETTE   89 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~v~~g~~v~l~C~~~g~~~---i~------~~~~~~~~~~   89 (283)
                      .+.|.|.|..|..+....|.|..++..     +... ....+.+|+.+.|.|.+.+.+.   +.      ..+....++.
T Consensus        65 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~-----~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~  139 (289)
T 3ejj_X           65 TYRCTELEDPMAGSTTIHLYVKDPAHS-----WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYF  139 (289)
T ss_dssp             EEEEECCC-----CEEEEEEECCSSCS-----EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEE
T ss_pred             EEEEEEeccCCcceeEEEEEEeCCCcc-----eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEE
Confidence            378999999999899999999886542     1111 1224667889999999998772   32      2223344555


Q ss_pred             EEEcCCEEEEEEccCCCCCCeEEEEEEEecc-ee-eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEee-ecC
Q psy14060         90 MEHKGKIQERVVDASELDDDGYYAITERKYY-AL-SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPL  162 (283)
Q Consensus        90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-~~-~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~  162 (283)
                      +..   ...|.|.+++.+|+|.|+|.+.+.. +. .....+.+    ..+|.+...+....+..|+.+.|.|.+.+ .|.
T Consensus       140 ~~~---~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~  216 (289)
T 3ejj_X          140 FSP---WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG  216 (289)
T ss_dssp             EET---TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred             ECC---CCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence            442   2358999999999999999998443 32 22222322    25788888888888889999999999998 688


Q ss_pred             CEEEEEeCCEecCCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        163 PTIKWFREDFPITSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       163 ~~~~W~k~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +.+.|++++..+..........  ......|.|.++..+|.|.|+|.|.|..|...+++.|.+..
T Consensus       217 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             CEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             eEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            9999999999886532211100  01145799999999999999999999999999999888764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.88  E-value=3.8e-21  Score=148.10  Aligned_cols=142  Identities=25%  Similarity=0.474  Sum_probs=122.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++.+........|.|.++..+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            46788888888999999999999999999999999999998887643  5666667778899999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |..+.......+.|....       .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus        84 n~~~~~~~~~~l~v~~~~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~  147 (194)
T 2a38_A           84 NGSGQATSTAELLVKAET-------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS  147 (194)
T ss_dssp             ETTEEEEEEEEEEEECCC-------EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred             cCCceEeEEEEEEEccCC-------CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC
Confidence            999988888888887421       3577777777888999999999999999999999999999988653

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.88  E-value=2.4e-21  Score=169.01  Aligned_cols=249  Identities=11%  Similarity=0.073  Sum_probs=147.0

Q ss_pred             ceEEEEEcCCe------------eeeeeeEEEEeCCCCCCCCCceeee-cCCeeeecCcEEEEEEEccC-cc-ce-EEee
Q psy14060         20 LKSRTASSDRS------------GVSTEETKIIDGRKVSVPEPSASGV-HGKEIHTAKSQQVQKEKKGD-KE-IV-RKIT   83 (283)
Q Consensus        20 ~~~~~a~n~~g------------~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~v~~g~~v~l~C~~~g~-~~-i~-~~~~   83 (283)
                      .+.|.|.|..|            .......|.|...+  ...|.+... ....+.+|+.++|.|.+.|. |. +. .|..
T Consensus        93 ~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  170 (457)
T 1hzh_H           93 VYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  170 (457)
T ss_dssp             EEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC--CBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETT
T ss_pred             EEEEEEecCCccccccccccccceECCcEEEEecCCC--CCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEe
Confidence            46788988876            22344566776532  123333322 22336678899999999987 43 33 4443


Q ss_pred             cCCC-----E-EEEEcCC----EEEEEEccCCCCCCeEEEEEEEecceeee-eeccCC-----------------CCCCe
Q psy14060         84 ATET-----T-EMEHKGK----IQERVVDASELDDDGYYAITERKYYALSD-LSEQKP-----------------AKPPV  135 (283)
Q Consensus        84 ~~~~-----~-~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-~~~~~~-----------------~~~p~  135 (283)
                      .+..     . .....++    ...|.|.++..+| |.|+|.+.|..+... ...+.+                 ..+|.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~  249 (457)
T 1hzh_H          171 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPS  249 (457)
T ss_dssp             TTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCE
T ss_pred             CCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCce
Confidence            3311     0 1111111    2479999999999 999999999876321 111221                 12455


Q ss_pred             E-EecCCcee-ecCCCcEEEEEEEeeecCC----EEEEEeCCEecCCCCCeEE-EEeCCEEE-EEEcCCCCCC---CEEE
Q psy14060        136 F-TKKIQPCR-AFEQDQARFEVEFDGDPLP----TIKWFREDFPITSSPDFQI-HTFSTKSI-LIMRQVFMED---SGVF  204 (283)
Q Consensus       136 ~-~~~~~~~~-~~~g~~v~l~C~~~g~p~~----~~~W~k~~~~~~~~~~~~~-~~~~~~~~-l~i~~~~~~d---~G~Y  204 (283)
                      + ...+.... +..|+.+.|.|.+.|.|++    .+.|+|++..+........ ........ .....+...|   .|.|
T Consensus       250 v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y  329 (457)
T 1hzh_H          250 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY  329 (457)
T ss_dssp             EEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCE
T ss_pred             EEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcE
Confidence            4 33333332 6789999999999987543    9999999988754321111 11111111 1111244555   9999


Q ss_pred             EEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCc-eEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060        205 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISATKPL--DVYWLKVSSLSD  278 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~  278 (283)
                      +|.|.|..+.......+.+...      ...+|.+...+.. ..+..|+ +.|.|.+.|.+++  .|.|++||+.+.
T Consensus       330 ~C~a~n~~~~~~~~~~v~~~~~------~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~  399 (457)
T 1hzh_H          330 KCKVSNKALPAPIEKTISKAKG------QPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPEN  399 (457)
T ss_dssp             EEEEECTTSSSCEEEEECCCCC------CCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEEEeCCCCCCcceEEEEcccC------CCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECc
Confidence            9999987655433333332000      0136766654433 2344555 9999999997554  899999999885

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.88  E-value=8.4e-22  Score=168.01  Aligned_cols=190  Identities=17%  Similarity=0.176  Sum_probs=138.5

Q ss_pred             cceEEEEEcCCeee-ee---eeEEEEeCCCCC--CCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeec-------
Q psy14060         19 ILKSRTASSDRSGV-ST---EETKIIDGRKVS--VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-------   84 (283)
Q Consensus        19 ~~~~~~a~n~~g~~-~~---~~~l~v~~~~~~--~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-------   84 (283)
                      =.+.|.|.|..+.. ..   ...|.|..+...  ...|.+.. ....+.+|+.+.|.|.+.|.|... .|...       
T Consensus       178 G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~  256 (388)
T 2v5m_A          178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ-KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRK  256 (388)
T ss_dssp             CCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCC-CCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCE
T ss_pred             eeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccC-CceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccc
Confidence            35788899876443 21   235666654221  11111111 112377789999999999887332 33322       


Q ss_pred             -----CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEe
Q psy14060         85 -----TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD  158 (283)
Q Consensus        85 -----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~  158 (283)
                           ..++...    ...|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+...+....+..|+.+.|.|.+.
T Consensus       257 ~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~  332 (388)
T 2v5m_A          257 QAVVLNDRVKQV----SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT  332 (388)
T ss_dssp             EECCCSSSEEEE----TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEE
T ss_pred             ccccccCceecc----cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEec
Confidence                 2222211    237999999999999999999999884 334455666677777777888899999999999999


Q ss_pred             eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       159 g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.+.+.|++++..+....          ..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       333 g~p~p~i~W~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          333 GNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cccCCeEEEEECCEECccCC----------CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            99999999999999886532          36999999999999999999999999988888775

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.88  E-value=1e-21  Score=168.19  Aligned_cols=203  Identities=13%  Similarity=0.108  Sum_probs=147.4

Q ss_pred             cceEEEEEcCCeee---eeeeEEEEeCCCC-CCCCCceeee----cCCeeeecCcEEEEEEEccCccce-EEeecCC---
Q psy14060         19 ILKSRTASSDRSGV---STEETKIIDGRKV-SVPEPSASGV----HGKEIHTAKSQQVQKEKKGDKEIV-RKITATE---   86 (283)
Q Consensus        19 ~~~~~~a~n~~g~~---~~~~~l~v~~~~~-~~~~p~~~~~----~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~---   86 (283)
                      =.+.|.|.|..|..   +....+.|...+. ....|.+...    ....+..|+.+.|.|.+.|.|... .|...+.   
T Consensus       185 G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~  264 (404)
T 3p3y_A          185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP  264 (404)
T ss_dssp             SCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCC
T ss_pred             cceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECC
Confidence            35889999988764   3345666665433 2223333221    112367788999999999988433 4443222   


Q ss_pred             --CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC
Q psy14060         87 --TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP  163 (283)
Q Consensus        87 --~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  163 (283)
                        ......  ....|.|.+++.+|+|.|+|.+.|..+. .....+.+..+|.+...+....+..|+.+.|.|.+.|.|.+
T Consensus       265 ~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  342 (404)
T 3p3y_A          265 SDKAKFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP  342 (404)
T ss_dssp             TTTEEEEG--GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC
T ss_pred             CCcccccc--cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCC
Confidence              122221  2347999999999999999999999874 34445666678888888888899999999999999999999


Q ss_pred             EEEEEeCCEecCCCCC-eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        164 TIKWFREDFPITSSPD-FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       164 ~~~W~k~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+.|++++..+..... ......+  ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       343 ~v~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          343 TVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEEEEETTEEGGGSCCCTTEEEET--TEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ceEEEECCEecCCCCCCceEEecC--CEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999998865431 1122222  2699999999999999999999999999988888753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.88  E-value=1.2e-21  Score=160.56  Aligned_cols=194  Identities=11%  Similarity=-0.012  Sum_probs=138.2

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCcc-ce-EE-ee------cCCCEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKE-IV-RK-IT------ATETTEM   90 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~-i~-~~-~~------~~~~~~~   90 (283)
                      .+.|.|.|  |. +....|.|..++.....+     ....+.+|+.+.|.|.+.+ |. .. .| ..      ...++..
T Consensus        71 ~Y~C~~~n--g~-~~~~~l~V~~~~~~~~~~-----~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~  141 (290)
T 2o26_X           71 TYTCSNSN--GL-TSSIYVFVRDPAKLFLVG-----LPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVP  141 (290)
T ss_dssp             EEEEEESS--SC-EEEEEEEEECSSCCBCCC-----CCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEE
T ss_pred             EEEEEeeC--Cc-cEEEEEEEeCCCcccccc-----cceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceee
Confidence            46899999  54 777888888765432211     1123667889999999996 54 33 34 22      2223333


Q ss_pred             EEcCCEEEEEEccCCCCCCe-EEEEEEEecceeee--eeccC----CCCCCeEEecCCceeecCCCcEEEEEEEeeecCC
Q psy14060         91 EHKGKIQERVVDASELDDDG-YYAITERKYYALSD--LSEQK----PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP  163 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~~~~--~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  163 (283)
                      ..   ...|.|.+++.+|+| .|+|.+.|..+...  ...+.    ...+|.+...+....+..|+.+.|.|.+.|.|.|
T Consensus       142 ~~---~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p  218 (290)
T 2o26_X          142 NP---KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS  218 (290)
T ss_dssp             ET---TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTT
T ss_pred             CC---CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcc
Confidence            32   236899999999999 99999999865422  12222    3468888777777789999999999999999998


Q ss_pred             E-EEEEeCCEec----CCCCCeEEE---EeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        164 T-IKWFREDFPI----TSSPDFQIH---TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       164 ~-~~W~k~~~~~----~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      . +.|++++..+    .......+.   .......|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       219 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             CEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             eeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            5 9999998763    322222222   112345799999999999999999999999998888888764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=7.1e-21  Score=146.24  Aligned_cols=162  Identities=15%  Similarity=0.140  Sum_probs=123.5

Q ss_pred             eeeecCcEEEEEEEccCc-cce-EEee--------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce--eeee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-RKIT--------ATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA--LSDL  125 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-~~~~--------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~--~~~~  125 (283)
                      .+.+|+.+.|.|.+.+.+ ... .|..        ...++.+.. ......|.|.+++.+|+|.|+|.+.|..+  ....
T Consensus        13 ~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   92 (191)
T 1epf_A           13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT   92 (191)
T ss_dssp             EEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEE
Confidence            477788999999999876 332 3333        233444432 25678999999999999999999999873  3334


Q ss_pred             eccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC--CCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       126 ~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ..+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...  .++.+...   ..|.|.++..+|+|.
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~  169 (191)
T 1epf_A           93 VNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYLQIRGIKKTDEGT  169 (191)
T ss_dssp             EEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT---SCEEETTCCGGGCEE
T ss_pred             EEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecC---CeEEECCCChhhCEE
Confidence            4556667888888888888999999999999999999999999999988642  23333222   259999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEE
Q psy14060        204 FAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |+|.|.|..+.......+.|
T Consensus       170 Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          170 YRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEEEEecceeEEEEEEEE
Confidence            99999999876555554444

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.88  E-value=2.5e-21  Score=168.25  Aligned_cols=219  Identities=8%  Similarity=0.047  Sum_probs=140.0

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|+.++|.|.+.+.+    .+ .|..                         ...|+.+...  ++...|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (444)
T 1igt_B           11 LVQPGGSLKLSCATSGFTFSDYYM-YWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSE   89 (444)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCE-EEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEcCCCccCCceE-EEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHH
Confidence            467788999999998763    22 2221                         1235555432  35789999999999


Q ss_pred             CCeEEEEEEEeccee----eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCC
Q psy14060        108 DDGYYAITERKYYAL----SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSS  177 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~----~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~  177 (283)
                      |+|.|.|.+.|..+.    .....+.+    ..+|.+........+..|+.+.|.|.+.|. |.| .+.|++++..+...
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  169 (444)
T 1igt_B           90 DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH  169 (444)
T ss_dssp             GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE
Confidence            999999999986431    11112222    234554433333345789999999999985 776 99999998763210


Q ss_pred             CCeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEecc--------CCCCCCCCCCeE-EecCCc
Q psy14060        178 PDFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR--------QGGRGGVVPPSF-LTTISS  245 (283)
Q Consensus       178 ~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--------~~~~~~~~~p~~-~~~~~~  245 (283)
                      ........+   ....|.|..+..+| |.|+|.|.|..+.......+.+....        ........+|.+ ..++..
T Consensus       170 ~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~  248 (444)
T 1igt_B          170 TFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKI  248 (444)
T ss_dssp             ECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCH
T ss_pred             ecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCch
Confidence            000000111   12468999999899 99999999999876554444331000        000001125555 333333


Q ss_pred             eE-EcCCCeEEEEEEEEeeC----CCeeEEeeCCEEecC
Q psy14060        246 AV-INVGQLARFDAKISATK----PLDVYWLKVSSLSDV  279 (283)
Q Consensus       246 ~~-v~~g~~v~L~C~~~g~p----~~~v~W~~~g~~l~~  279 (283)
                      .. +.+|+.+.|.|.+.|.|    .+.|.|+++|..+..
T Consensus       249 ~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~  287 (444)
T 1igt_B          249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHT  287 (444)
T ss_dssp             HHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSS
T ss_pred             hheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccC
Confidence            33 58999999999999984    358999999988753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.9e-21  Score=160.76  Aligned_cols=200  Identities=15%  Similarity=0.150  Sum_probs=137.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCC------CCCceee--ecCCeeeecCcEEEEEEEc-cCccce-------EEee
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSV------PEPSASG--VHGKEIHTAKSQQVQKEKK-GDKEIV-------RKIT   83 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~------~~p~~~~--~~~~~v~~g~~v~l~C~~~-g~~~i~-------~~~~   83 (283)
                      .+.|.|.|..|... ...+.|.......      ..|.+..  .....+.+|+.+.|.|.+. +.|...       ..+.
T Consensus        72 ~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~  150 (312)
T 2y23_A           72 IYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF  150 (312)
T ss_dssp             EEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC
T ss_pred             EEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe
Confidence            47899999888554 4555554311000      0122221  1123477788999999999 777332       3444


Q ss_pred             cCCCEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEecceeeee-ecc-------------------CCCCCCeEEecCC
Q psy14060         84 ATETTEMEHK--GKIQERVVDASELDDDGYYAITERKYYALSDL-SEQ-------------------KPAKPPVFTKKIQ  141 (283)
Q Consensus        84 ~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~-------------------~~~~~p~~~~~~~  141 (283)
                      ...++.+...  +....|.|.+++.+|+|.|+|.+.+....... ..+                   ....+|.+.....
T Consensus       151 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  230 (312)
T 2y23_A          151 EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS  230 (312)
T ss_dssp             SSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             eCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecce
Confidence            4555555543  56778999999999999999998775442211 111                   0112465554333


Q ss_pred             ceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                       ..+..|+.+.|.|.+.+.|.+ .+.|++++..+....++.+.  .....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus       231 -~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  307 (312)
T 2y23_A          231 -WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  307 (312)
T ss_dssp             -EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEE
T ss_pred             -EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeE
Confidence             678899999999999999888 99999999988755554443  34568999999999999999999999999988888


Q ss_pred             EEE
Q psy14060        221 LVV  223 (283)
Q Consensus       221 l~v  223 (283)
                      |.+
T Consensus       308 l~i  310 (312)
T 2y23_A          308 LVD  310 (312)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=6.6e-21  Score=145.36  Aligned_cols=156  Identities=19%  Similarity=0.205  Sum_probs=119.1

Q ss_pred             eeeecCcEEEEEEEccCc--cce-----EEeecCCCEEEEEcCC--EEEEEEccCCCCCCeEEEEEEEeccee--eeeec
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-----RKITATETTEMEHKGK--IQERVVDASELDDDGYYAITERKYYAL--SDLSE  127 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-----~~~~~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~  127 (283)
                      .+.+|+.+.|.|.+.|.|  .+.     ..+....+..+...+.  ...|.|.+++.+|+|.|+|.+.|..+.  .....
T Consensus        13 ~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~   92 (182)
T 1rhf_A           13 TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW   92 (182)
T ss_dssp             EEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEE
T ss_pred             EEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEE
Confidence            367788999999999877  332     2333333333332222  478999999999999999999988552  33445


Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +.+..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+.....       ....|.|.++  +|+|.|+|
T Consensus        93 l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C  163 (182)
T 1rhf_A           93 LTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSC  163 (182)
T ss_dssp             EEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEE
T ss_pred             EEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEE
Confidence            666678888888888889999999999999999999 9999999998864321       4457899888  58999999


Q ss_pred             EEEeCCceeEE-EEEEEE
Q psy14060        207 IAENRGGKAKC-SANLVV  223 (283)
Q Consensus       207 ~a~n~~g~~~~-~~~l~v  223 (283)
                      .|.|..|...+ .+.|.|
T Consensus       164 ~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          164 EAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEECCCCCcccceEEEEe
Confidence            99999998754 566654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.87  E-value=4.9e-21  Score=146.78  Aligned_cols=161  Identities=18%  Similarity=0.223  Sum_probs=120.7

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee---eeee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL---SDLS  126 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~  126 (283)
                      .+.+|+.+.|.|.+.+.|... .|...        ..++....   ...|.|.+++.+|+|.|+|.+.+..+.   ....
T Consensus        13 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~   89 (189)
T 2v5t_A           13 EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI   89 (189)
T ss_dssp             EEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec---CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEE
Confidence            477888999999999887332 33222        22333322   235999999999999999999988642   1223


Q ss_pred             ccCCCCCCeEEecCC--ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        127 EQKPAKPPVFTKKIQ--PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       127 ~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      .+.+..+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+.  .....|.|.++..+|+|.|
T Consensus        90 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y  167 (189)
T 2v5t_A           90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPY  167 (189)
T ss_dssp             EEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE--TTTTEEEECSCCGGGCEEE
T ss_pred             EEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe--cCCCEEEEcCCChhhCeeE
Confidence            344444565554433  346778999999999999999999999999998876665443  3345799999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +|.|.|..|.....+.|.|.
T Consensus       168 ~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          168 VCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCceeEEEEEEEE
Confidence            99999999998888888775

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=158.44  Aligned_cols=196  Identities=8%  Similarity=0.015  Sum_probs=127.0

Q ss_pred             eeecCcEEEEEEEccCccceEEeecCCC----EEEEEcC-CEEEEEEccCCCCCCeEEEEEEEeccee----eeeeccCC
Q psy14060         60 IHTAKSQQVQKEKKGDKEIVRKITATET----TEMEHKG-KIQERVVDASELDDDGYYAITERKYYAL----SDLSEQKP  130 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~~~~~~~~~----~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~----~~~~~~~~  130 (283)
                      +.+|+.++|.|.+.|.  + .|...+..    ......+ ....|.|.+++.+|+|.|+|.+.|..+.    .....+.+
T Consensus        12 v~~G~~v~L~C~~~~~--v-~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v   88 (289)
T 3mjg_X           12 LNVSSTFVLTCSGSAP--V-VWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV   88 (289)
T ss_dssp             CCTTCCEEEEEEESSC--C-EEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEEC
T ss_pred             EeCCCcEEEEEeccce--E-EEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEE
Confidence            6678899999999986  4 33332222    2221121 2478999999999999999999987753    11222333


Q ss_pred             CCCCe-EEecCCc---eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        131 AKPPV-FTKKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       131 ~~~p~-~~~~~~~---~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ..+.. +......   ..+..|+.+.|.|.+. .|.+.+.|++++........+    ..... +.    ...|+|.|+|
T Consensus        89 ~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~----~~~~~-~~----~~~d~G~Y~C  158 (289)
T 3mjg_X           89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY----DHQRG-FS----GIFEDRSYIC  158 (289)
T ss_dssp             CCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE----ETTTE-EE----ECCCSSEEEE
T ss_pred             ECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee----cCCcC-ee----eeccCcEEEE
Confidence            22221 1111111   5688999999999998 588889988865222111111    11111 11    2579999999


Q ss_pred             EEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEE
Q psy14060        207 IAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSL  276 (283)
Q Consensus       207 ~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~  276 (283)
                      .|.|..+..... ..+.+...        .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.
T Consensus       159 ~a~n~~~~~~s~~~~l~v~~~--------~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~  221 (289)
T 3mjg_X          159 KTTIGDREVDSDAYYVYRLQV--------SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE  221 (289)
T ss_dssp             EEEETTEEEECCCEEEEECCC--------CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSS
T ss_pred             EEEeCCceeeeeeEEEEecCC--------CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCcc
Confidence            999887665443 45555432        256666666667899999999999999999999999987764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.87  E-value=1.7e-21  Score=149.75  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=125.3

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec-------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee--eeeecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA-------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL--SDLSEQ  128 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~  128 (283)
                      .+.+|+.+.|.|.+.|.|... .|...       ..++.+...+  ..|.|.+++.+|+|.|+|.+.|..+.  .....+
T Consensus        18 ~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   95 (192)
T 2iep_A           18 DALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGAL   95 (192)
T ss_dssp             EEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEE
T ss_pred             eeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEE
Confidence            367788999999999877322 22221       3455544333  36999999999999999999988763  233345


Q ss_pred             CCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       129 ~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...   ..|.|.++..+|+|.|+|.+
T Consensus        96 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a  172 (192)
T 2iep_A           96 QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVA  172 (192)
T ss_dssp             EEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT---SCEEESSCCGGGCEEEEEEE
T ss_pred             EEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC---CcEEEecCChhhCEEEEEEE
Confidence            556678887777778899999999999999999999999999999887665544332   25999999999999999999


Q ss_pred             EeCCceeEE-EEEEEEEe
Q psy14060        209 ENRGGKAKC-SANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~~-~~~l~v~~  225 (283)
                      .|..|...+ .+.|.|..
T Consensus       173 ~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          173 KNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCcEEEEEEEEEEEe
Confidence            999998744 47777763

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=2.2e-20  Score=142.70  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=121.7

Q ss_pred             eeeecCcEEEEEEEccCccc--e-EEeecCCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI--V-RKITATETTEME-HKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPP  134 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i--~-~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p  134 (283)
                      .+.+|+.+.|.|.+.|.+..  . .|...+...... .......|.|.  +.+|+|.|+|.+.|...  ....+.+..+|
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~~--~~~~l~V~~~P   84 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEPM--GTANIQLHGPP   84 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTTS--CEEEEEECCSC
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECCcC--cEEEEEEecCC
Confidence            47889999999999987632  2 444332211110 11234566666  68999999999998433  23345556788


Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEe---CCE-ecCCC--CCeEEEEeCCEEEEEEcCCC-CCCCEEEEE
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFR---EDF-PITSS--PDFQIHTFSTKSILIMRQVF-MEDSGVFAV  206 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k---~~~-~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C  206 (283)
                      .+...+....+..|+.+.|.|.+.+.| .+.+.|++   ++. .+...  .++.+...+....|.|.++. .+|.|.|+|
T Consensus        85 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C  164 (184)
T 3b5h_A           85 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRC  164 (184)
T ss_dssp             CCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEE
T ss_pred             ceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEE
Confidence            888777778899999999999999999 79999999   444 44332  56777777777899999999 899999999


Q ss_pred             EEEeCCceeEEEEEEEEE
Q psy14060        207 IAENRGGKAKCSANLVVE  224 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~  224 (283)
                      .|.|..|.....+.|.|.
T Consensus       165 ~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          165 NGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEETTEEEEEEEEEEEC
T ss_pred             EEEeCCCcceEEEEEEEe
Confidence            999999998888888775

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.87  E-value=2e-20  Score=144.16  Aligned_cols=141  Identities=21%  Similarity=0.351  Sum_probs=121.0

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++..+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            35788888888899999999999999999999999999999999887788888777788999999999999999999999


Q ss_pred             CCceeEEEEEEEEEeccCCCCCCCCCCeEEec---CCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCCC
Q psy14060        211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT---ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKR  281 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~---~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~~  281 (283)
                      ..+.......+.|..          +|.+...   .....+..|+.+.|.|.+.+.|.|.+.|+++|..+....
T Consensus        85 ~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~  148 (197)
T 3lcy_A           85 EVGEVETSSKLLLQA----------TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE  148 (197)
T ss_dssp             SSCEEEEEEEEEEEE----------EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS
T ss_pred             CCCceeEEEEEEEEc----------CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCC
Confidence            999888888888875          3333321   234567899999999999999999999999999986543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.87  E-value=3.1e-20  Score=145.29  Aligned_cols=145  Identities=23%  Similarity=0.353  Sum_probs=121.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecC-CCCCeEEEEe-CCEEEEEEcCCCC-CCCEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTF-STKSILIMRQVFM-EDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~-~d~G~Y~C~a  208 (283)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... +....|.|.++.. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            58889999999999999999999999999999999999999987 4456665543 4457899999999 9999999999


Q ss_pred             EeCCce-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        209 ENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       209 ~n~~g~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .|..|. ....+.|.|.....   ....+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~---~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~  153 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDK---TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM  153 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTC---SCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCT
T ss_pred             EeCCCCeEEeeEEEEEecccC---CCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEccc
Confidence            999988 67778888875321   011237788777788899999999999999999999999999999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1.7e-23  Score=181.52  Aligned_cols=249  Identities=11%  Similarity=0.036  Sum_probs=150.3

Q ss_pred             eEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeee-cCCeeeecCcEEEEEEEccC-cc-ce-EEeecCCCEE------E
Q psy14060         21 KSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGV-HGKEIHTAKSQQVQKEKKGD-KE-IV-RKITATETTE------M   90 (283)
Q Consensus        21 ~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~v~~g~~v~l~C~~~g~-~~-i~-~~~~~~~~~~------~   90 (283)
                      +.|.|.|..+.......|.|.....  ..|.+... ....+..|+.++|.|.+.|. |. +. .|...+....      .
T Consensus        93 Y~C~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~  170 (434)
T 1igy_B           93 YYCVREGEVPYWGQGTTVTVSSAKT--TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV  170 (434)
T ss_dssp             ECCCCSSSSCCCCCCEECEECCSCC--BCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCE
T ss_pred             EEEEEEccccccCCceEEEEccCCC--CCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCce
Confidence            4566777554444555677764211  22333322 22235678899999999986 53 23 4443322100      0


Q ss_pred             EEcC---CEEEEEEccCCCCCCeEEEEEEEecceee-eeeccCCC-------------CCCeEEecCCcee-ecCCCcEE
Q psy14060         91 EHKG---KIQERVVDASELDDDGYYAITERKYYALS-DLSEQKPA-------------KPPVFTKKIQPCR-AFEQDQAR  152 (283)
Q Consensus        91 ~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~-------------~~p~~~~~~~~~~-~~~g~~v~  152 (283)
                      ...+   ....|.|.++..+| |.|+|.+.|..+.. ....+.+.             .+..+...+.... +..|+.+.
T Consensus       171 ~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~  249 (434)
T 1igy_B          171 LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPK  249 (434)
T ss_dssp             ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCE
T ss_pred             ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcE
Confidence            0011   13468999999999 99999999987742 12222111             1233333333222 78899999


Q ss_pred             EEEEEeeec----CCEEEEEeCCEecCCCCCeEEE--Ee---CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        153 FEVEFDGDP----LPTIKWFREDFPITSSPDFQIH--TF---STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       153 l~C~~~g~p----~~~~~W~k~~~~~~~~~~~~~~--~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.+.|.+    .+.+.|+|++..+.........  ..   ...+.|.|.++..+|.|.|+|.|.|..+.......+.+
T Consensus       250 L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~  329 (434)
T 1igy_B          250 VTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISK  329 (434)
T ss_dssp             EEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCC
T ss_pred             EEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEec
Confidence            999999873    3589999999776432111000  00   11235889999999999999999998876433222221


Q ss_pred             EeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060        224 EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSD  278 (283)
Q Consensus       224 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~  278 (283)
                      ..      ....+|.+...+.......|+.+.|.|.+.|.+++  .|+|++||+.+.
T Consensus       330 ~~------~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  380 (434)
T 1igy_B          330 TK------GKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPE  380 (434)
T ss_dssp             CC------SCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCS
T ss_pred             cC------CCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecC
Confidence            00      00135666554433334467789999999996443  899999999874

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.87  E-value=1.3e-21  Score=163.18  Aligned_cols=210  Identities=11%  Similarity=0.048  Sum_probs=129.2

Q ss_pred             CcEEEEEEEccC-c-cce-EEeecC------CCE--EEEEcCC---EEEEEEccCCCCCCeEEEEEEEecceeeee-ecc
Q psy14060         64 KSQQVQKEKKGD-K-EIV-RKITAT------ETT--EMEHKGK---IQERVVDASELDDDGYYAITERKYYALSDL-SEQ  128 (283)
Q Consensus        64 ~~v~l~C~~~g~-~-~i~-~~~~~~------~~~--~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~  128 (283)
                      +.+.|.|.+.|. | .+. .|...+      ...  .....+.   ...|.|.++..+|+|.|+|.+.|..+.... ..+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            489999999985 3 232 333221      111  1111221   235788888888999999999998764321 111


Q ss_pred             ---CCCCCC-eEEecCCceeecCCCcEEEEEEEeee-cCC---EEEEEeCC-EecCCCCCeEEEEeC----CEEEEEEcC
Q psy14060        129 ---KPAKPP-VFTKKIQPCRAFEQDQARFEVEFDGD-PLP---TIKWFRED-FPITSSPDFQIHTFS----TKSILIMRQ  195 (283)
Q Consensus       129 ---~~~~~p-~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~---~~~W~k~~-~~~~~~~~~~~~~~~----~~~~l~i~~  195 (283)
                         ....+| .+...+....+..|+.+.|.|.+.|. |.+   .+.|+|++ ..+............    ..+.|.|.+
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~  184 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGT  184 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCH
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECH
Confidence               111233 33444555567889999999999886 456   89999975 333222111110101    134699999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC-C-eeEEeeC
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP-L-DVYWLKV  273 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~-~v~W~~~  273 (283)
                      +..+|.|.|+|.+.|..+.......+.+..      ....+|.+...+.......|+.++|.|.+.|.++ + .|.|++|
T Consensus       185 ~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~------~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~  258 (323)
T 2wqr_A          185 RDWIEGETYQCRVTHPHLPRALMRSTTKTS------GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHN  258 (323)
T ss_dssp             HHHHTTCCEEEEEECTTSSSCEEEEECCCC------SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             HHccCCCCEEEEEECCCCCCCeeeEEEccC------CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEEC
Confidence            999999999999999874433233322110      0013566554333222234999999999998543 3 7999999


Q ss_pred             CEEecC
Q psy14060        274 SSLSDV  279 (283)
Q Consensus       274 g~~l~~  279 (283)
                      |+.|..
T Consensus       259 g~~l~~  264 (323)
T 2wqr_A          259 EVQLPD  264 (323)
T ss_dssp             TEECCG
T ss_pred             CEECCC
Confidence            998854

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.87  E-value=4.1e-20  Score=144.61  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=118.9

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE-eCCEEEEEEcCC-CCCCCEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT-FSTKSILIMRQV-FMEDSGVFAVIA  208 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~-~~~~~~l~i~~~-~~~d~G~Y~C~a  208 (283)
                      ..+|.|...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.......+.. .+....|.|.++ ..+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            357888888888999999999999999999999999999999987643332222 234667999999 599999999999


Q ss_pred             EeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        209 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      .|..|.....+.|.|......   +...|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|+.+...
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~---~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~  152 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQI---PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS  152 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGC---CTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC---
T ss_pred             EcCCCcEEEEEEEEEeccCcc---CCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc
Confidence            999999888888888753110   112477777777788999999999999999999999999999988653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.86  E-value=1.8e-20  Score=144.57  Aligned_cols=138  Identities=12%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCC--CeEEEEeCC-------EEEEEEcCCCCCCCE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSP--DFQIHTFST-------KSILIMRQVFMEDSG  202 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~G  202 (283)
                      +|.|...+....+..|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+.....       ...|.|.++..+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67888889999999999999999999 88999999999999987652  233332222       468999999999999


Q ss_pred             EEEEEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecCC
Q psy14060        203 VFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDVK  280 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~~  280 (283)
                      .|+|.+.|..+..... +.|.|.          .+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+...
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  151 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLE----------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA  151 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC----------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSS
T ss_pred             EEEEEEEeCCCceecccEEEEEe----------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCC
Confidence            9999999988765444 677776          47888888888899999999999999999999 99999999988654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.86  E-value=1.2e-20  Score=156.45  Aligned_cols=201  Identities=9%  Similarity=0.035  Sum_probs=137.3

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCC-CCCCCCceeeecCCeeeecCcEEEEEEE------ccCccce-EEeecCCC----
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRK-VSVPEPSASGVHGKEIHTAKSQQVQKEK------KGDKEIV-RKITATET----   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~-~~~~~p~~~~~~~~~v~~g~~v~l~C~~------~g~~~i~-~~~~~~~~----   87 (283)
                      .+.|.|.|..|..+....+.+...+ .....+..  .....+..|+.+.|.|.+      .|.|... .|...+..    
T Consensus        76 ~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~  153 (315)
T 1itb_B           76 HYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA--IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD  153 (315)
T ss_dssp             CCEECCCSSSCCCCEECCCEEECCCTTSSSCGGG--EEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC
T ss_pred             EEEEEEeCCceEEEEEEEEEEeCCCCCccccccc--ccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc
Confidence            4678899999887776666655432 22212111  111237778899999998      7877322 23222111    


Q ss_pred             -EEEEEcCCEEEEEEccCCCCCCeEEEEEEE-ecceee----eeecc---C--CCCCCeEEecCCc-eeecCCCcEEEEE
Q psy14060         88 -TEMEHKGKIQERVVDASELDDDGYYAITER-KYYALS----DLSEQ---K--PAKPPVFTKKIQP-CRAFEQDQARFEV  155 (283)
Q Consensus        88 -~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-n~~~~~----~~~~~---~--~~~~p~~~~~~~~-~~~~~g~~v~l~C  155 (283)
                       ......  ...|.|.+++.+|+|.|+|.+. |..+..    ....+   .  ...+|.+...+.. ..+..|+.+.|.|
T Consensus       154 ~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C  231 (315)
T 1itb_B          154 NIHFSGV--KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC  231 (315)
T ss_dssp             SSSEEEE--TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEE
T ss_pred             cceEeec--CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEE
Confidence             111222  2379999999999999999999 666632    11111   1  1357777655543 4788999999999


Q ss_pred             EEeeecCCEEEEEeCCEecCCCCCeEEE----Ee--------CCEEEEEEcCCCCCC-CEEEEEEEEeCCceeEEEEEEE
Q psy14060        156 EFDGDPLPTIKWFREDFPITSSPDFQIH----TF--------STKSILIMRQVFMED-SGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       156 ~~~g~p~~~~~W~k~~~~~~~~~~~~~~----~~--------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      .+.|.|.|.+.|++++..+.........    ..        .....|.|.++..+| +|.|+|.|.|..|.....+.|.
T Consensus       232 ~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~  311 (315)
T 1itb_B          232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  311 (315)
T ss_dssp             EEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEE
T ss_pred             EEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEE
Confidence            9999999999999999998765432111    11        113479999999999 9999999999999998888877


Q ss_pred             EE
Q psy14060        223 VE  224 (283)
Q Consensus       223 v~  224 (283)
                      |.
T Consensus       312 v~  313 (315)
T 1itb_B          312 YP  313 (315)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=4.4e-21  Score=154.36  Aligned_cols=168  Identities=12%  Similarity=0.031  Sum_probs=102.8

Q ss_pred             CCCCCCeEEEEEEEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeec-----CCEEEEEeCC--Eec--
Q psy14060        104 SELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRED--FPI--  174 (283)
Q Consensus       104 ~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-----~~~~~W~k~~--~~~--  174 (283)
                      ++.+|+|.|+|.|.... .. ...+.+..++.+...+....+..|+++.|.|.+.+.|     .+.+.|+|++  ..+  
T Consensus        11 v~~~dsg~Y~C~a~g~~-~~-~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~   88 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYS-FT-NYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR   88 (254)
T ss_dssp             -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred             ecCCccEEEEEcCchhh-hh-hhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence            67899999999998221 11 1122223366677778888999999999999999877     4889999843  211  


Q ss_pred             ----------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecC
Q psy14060        175 ----------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTI  243 (283)
Q Consensus       175 ----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~  243 (283)
                                ....++.+...+....|.|.++..+|+|.|+|.+.|..+.... ...+.|....       .+|.+...+
T Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~-------~~P~v~~~~  161 (254)
T 2c1o_A           89 LIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD-------AAPTVSIFP  161 (254)
T ss_dssp             EEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC-------BCCEEEEEC
T ss_pred             EEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC-------CCCeeEeec
Confidence                      1124666666667778999999999999999999987653222 2355554321       356666644


Q ss_pred             CceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecCC
Q psy14060        244 SSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDVK  280 (283)
Q Consensus       244 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~~  280 (283)
                      .......|+.+.|.|.+.|.+++  .+.|++||+.+...
T Consensus       162 ~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  200 (254)
T 2c1o_A          162 PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  200 (254)
T ss_dssp             CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTT
T ss_pred             CChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCc
Confidence            44434568899999999985443  59999999987653

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.85  E-value=7.8e-20  Score=141.10  Aligned_cols=144  Identities=24%  Similarity=0.353  Sum_probs=116.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+|.|...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. .+....|.|.++..+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            4788888888899999999999999999999999999999988753 3555543 3455689999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |..|.....+.|.|......     ..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|+.+...
T Consensus        83 n~~g~~~~~~~l~V~~~p~~-----~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~  148 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKI-----HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN  148 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEE-----CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS
T ss_pred             ECCCceeEEEEEEEcCCCcC-----CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC
Confidence            99998888888888752110     1122222234567889999999999999999999999999988643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.85  E-value=1.6e-21  Score=163.98  Aligned_cols=201  Identities=11%  Similarity=0.029  Sum_probs=109.4

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-----ccCccce-EEe------ecCCC
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-----KGDKEIV-RKI------TATET   87 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-----~g~~~i~-~~~------~~~~~   87 (283)
                      .+.|.|.|..|..+....|.|...+......... .....+.+|+.+.|.|.+     .|.|... .|.      ....+
T Consensus        93 ~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~  171 (349)
T 4dep_C           93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL-PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN  171 (349)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCC-CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred             EEEEEEecCCceEEEEEEEEEecCCcccCccccc-CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence            4689999999999999999998865422221110 011135667889999985     5666332 333      22222


Q ss_pred             EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc-ee----eeeeccCCCC------CCeEEecCCce--eecCCCcEEEE
Q psy14060         88 TEMEHKGKIQERVVDASELDDDGYYAITERKYY-AL----SDLSEQKPAK------PPVFTKKIQPC--RAFEQDQARFE  154 (283)
Q Consensus        88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-~~----~~~~~~~~~~------~p~~~~~~~~~--~~~~g~~v~l~  154 (283)
                      +.  ..+  ..|.|.+++.+|+|.|+|.+.|.. +.    .....+.+..      +|.+.......  .+..|+.+.|.
T Consensus       172 ~~--~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~  247 (349)
T 4dep_C          172 VI--PEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP  247 (349)
T ss_dssp             EE--EET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCC
T ss_pred             ee--ecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEE
Confidence            22  222  469999999999999999999976 32    2233333322      56665544332  67889999999


Q ss_pred             EEEe----eecCCEEEEEeCCEecCC-CCCeEEEE-------e--CCEEEEEEcCCCCCCC-EEEEEEEEeCCceeEEEE
Q psy14060        155 VEFD----GDPLPTIKWFREDFPITS-SPDFQIHT-------F--STKSILIMRQVFMEDS-GVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       155 C~~~----g~p~~~~~W~k~~~~~~~-~~~~~~~~-------~--~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~  219 (283)
                      |.+.    +.|.|.+.|++++..+.. ..++.+..       .  .....|.|.++..+|. |.|+|.|.|..|.....+
T Consensus       248 C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~  327 (349)
T 4dep_C          248 CTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA  327 (349)
T ss_dssp             EEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEEC
T ss_pred             EEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEE
Confidence            9998    468899999999988765 22221100       0  0133599999999999 999999999999999888


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus       328 ~l~v~~  333 (349)
T 4dep_C          328 KVKQKV  333 (349)
T ss_dssp             C-----
T ss_pred             EEeeec
Confidence            888764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.85  E-value=7.2e-20  Score=152.91  Aligned_cols=195  Identities=11%  Similarity=-0.053  Sum_probs=134.0

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-cce-EEeec-------CCCEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-EIV-RKITA-------TETTEM   90 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~-~~~~~-------~~~~~~   90 (283)
                      .+.|.|.|..|.......+.+...+..    .+.......+.+|+.+.|.|.+.|.| ... .|...       ..++..
T Consensus       104 ~Y~C~a~n~~g~~~~~~~~~v~~~~p~----~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~  179 (329)
T 3oq3_B          104 RYLCTVTTKNGDCVQGIVRSHIRKPPS----CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ  179 (329)
T ss_dssp             CEEEEEECTTSCEEEEEEEEEECCCCS----CEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE
T ss_pred             cEEEEEEeCCCceeeEEEEEEEcCCCc----EeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec
Confidence            588999999987665554444443211    11211112255688999999999988 443 33322       223332


Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEec--cee---e--eeeccCCCCCC----eEEecCCceeecCCCcEEEEEEEee
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKY--YAL---S--DLSEQKPAKPP----VFTKKIQPCRAFEQDQARFEVEFDG  159 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~--~~~---~--~~~~~~~~~~p----~~~~~~~~~~~~~g~~v~l~C~~~g  159 (283)
                      .    ...|.|.+++.+|+|.|+|.+.|.  .+.   .  ....+.+..+|    .+. .+....+..|+.+.|.|.+.+
T Consensus       180 ~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g  254 (329)
T 3oq3_B          180 S----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVS  254 (329)
T ss_dssp             E----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEE
T ss_pred             C----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEE
Confidence            2    257999999999999999999986  431   1  11334443343    233 566678999999999999999


Q ss_pred             ec---CC-EEEEEeCCEecC-CCCCeEEE--EeC--CEEEEEEcCCCCCCCE-EEEEEEEeCCceeEEEEEEEE
Q psy14060        160 DP---LP-TIKWFREDFPIT-SSPDFQIH--TFS--TKSILIMRQVFMEDSG-VFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       160 ~p---~~-~~~W~k~~~~~~-~~~~~~~~--~~~--~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      .|   .+ .+.|++++..+. ........  ...  ....|.|.++..+|.| .|+|.|.|..|.....+.|.|
T Consensus       255 ~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          255 TSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             TTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            87   67 899999998753 33322211  122  3467999999999999 999999999999888887765

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=145.85  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=119.3

Q ss_pred             eeeecCcEEEEEE-EccCcc-ce-EEeecCCCE------EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee----
Q psy14060         59 EIHTAKSQQVQKE-KKGDKE-IV-RKITATETT------EMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL----  125 (283)
Q Consensus        59 ~v~~g~~v~l~C~-~~g~~~-i~-~~~~~~~~~------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~----  125 (283)
                      .+.+|+.+.|.|. +.+.|. .. .|.......      ..........|.|.+++.+|+|.|+|.+.|..+....    
T Consensus        19 ~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~   98 (201)
T 3s97_C           19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKF   98 (201)
T ss_dssp             EEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCC
T ss_pred             EEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcc
Confidence            4777889999999 777775 43 444332221      1112223456999999999999999999987642211    


Q ss_pred             ecc-------CCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        126 SEQ-------KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       126 ~~~-------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      ..+       ....+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+....  .+.  .....|.|.++..
T Consensus        99 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~--~~~~~L~i~~v~~  174 (201)
T 3s97_C           99 IPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EIS--TSGAVLKIFNIQL  174 (201)
T ss_dssp             EEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEE--TTTTEEEECSCCG
T ss_pred             cceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eec--CCCCEEEEccCCh
Confidence            111       11235666666667889999999999999999999999999999776432  222  2234799999999


Q ss_pred             CCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        199 EDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +|.|.|+|.+.|..|.....+.|.|.
T Consensus       175 ~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          175 EDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999999999999888888875

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.85  E-value=2.1e-20  Score=144.52  Aligned_cols=164  Identities=13%  Similarity=0.046  Sum_probs=114.2

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEE-----EcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME-----HKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.+...+...+.+|+.++|.|.+.+.+....+...+......     .......|.|.+++.+|+|.|+|.+.|..+.
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (196)
T 3p2t_A            4 PKPTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW   83 (196)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCEEEccCCCcCCCCCcEEEEeeCCCCCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcc
Confidence            46677666666688899999999999855322333333221111     1135788999999999999999999998772


Q ss_pred             ---eeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcC
Q psy14060        123 ---SDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQ  195 (283)
Q Consensus       123 ---~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~  195 (283)
                         +....+.+   ..+|.+...+.. .+..|+.++|.|.+.+ +.+.+.|+|++..+...... ..........|.|.+
T Consensus        84 ~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~  161 (196)
T 3p2t_A           84 SQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSP  161 (196)
T ss_dssp             BCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECS
T ss_pred             cCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCC
Confidence               22222222   235665554443 6789999999999987 45689999999876433211 111223346799999


Q ss_pred             CCCCCCEEEEEEEEeCCc
Q psy14060        196 VFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g  213 (283)
                      +..+|+|.|+|.|.|..+
T Consensus       162 v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          162 VTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CCGGGCEEEEEEEECGGG
T ss_pred             CcccCCCeEEEEEEcCCC
Confidence            999999999999999876

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.85  E-value=6.7e-21  Score=147.37  Aligned_cols=165  Identities=9%  Similarity=-0.054  Sum_probs=103.6

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEE-----EEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEM-----EHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.+...+...+.+|+.++|.|.+.+.+....|...+.....     ........|.|.+++.+|+|.|+|.+.|..+.
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (196)
T 2d3v_A            4 SKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGW   83 (196)
T ss_dssp             CBCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCEEEeCCCCcccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCc
Confidence            3566665555568889999999999988752244433322211     01345788999999999999999999988653


Q ss_pred             e---eeeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEE-eCCEEEEEEc
Q psy14060        123 S---DLSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHT-FSTKSILIMR  194 (283)
Q Consensus       123 ~---~~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~-~~~~~~l~i~  194 (283)
                      .   ....+.+.   .+|.+...+ ...+..|+.++|.|.+.+.| +.+.|+|++..+...... .... ......|.|.
T Consensus        84 ~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~  161 (196)
T 2d3v_A           84 SEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVG  161 (196)
T ss_dssp             CBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECC
T ss_pred             CCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEee
Confidence            2   22223222   255554433 35788999999999999988 999999999876421110 0100 1123679999


Q ss_pred             CCCCCCCEEEEEEEEeCCce
Q psy14060        195 QVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ++..+|+|.|+|.|.|..+.
T Consensus       162 ~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          162 PVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             CCBTTBCEEEEEEEEETTEE
T ss_pred             ecCcccCeeEEEEEEccCCC
Confidence            99999999999999997653

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=1.6e-21  Score=163.05  Aligned_cols=206  Identities=15%  Similarity=0.141  Sum_probs=119.6

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCC----------------CCCceeee-----cCCeeeecCcEEEEEEEccCccc
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSV----------------PEPSASGV-----HGKEIHTAKSQQVQKEKKGDKEI   78 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~----------------~~p~~~~~-----~~~~v~~g~~v~l~C~~~g~~~i   78 (283)
                      .+.|.|.|. |..+..+.|.|...+...                ..|.+...     ....+.+|+.+.|.|.+.|.|..
T Consensus        75 ~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~  153 (334)
T 1ry7_B           75 AYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP  153 (334)
T ss_dssp             ---------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCC
T ss_pred             EEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCC
Confidence            467889998 888888888887653211                12222210     01236678899999999998843


Q ss_pred             e-EEeecCCCE-------EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccCCC----CCCeEEe-cCCcee
Q psy14060         79 V-RKITATETT-------EMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQKPA----KPPVFTK-KIQPCR  144 (283)
Q Consensus        79 ~-~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~----~~p~~~~-~~~~~~  144 (283)
                      . .|...+...       ..........|.|.+++.+|+|.|+|.+.|..+.. ....+.+.    .+|.+.. .+....
T Consensus       154 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~  233 (334)
T 1ry7_B          154 SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT  233 (334)
T ss_dssp             EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEE
T ss_pred             eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceE
Confidence            3 333222111       11112234579999999999999999999998732 22222221    2343332 245677


Q ss_pred             ecCCCcEEEEEEEeeecCCEEEEEe----CCEecCCCCC--eEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        145 AFEQDQARFEVEFDGDPLPTIKWFR----EDFPITSSPD--FQIHTF-------STKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~p~~~~~W~k----~~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +..|+.+.|.|.+.|.|.+.+.|++    ++..+.....  +.+...       .....|.|.++..+|+|.|+|.|.|.
T Consensus       234 ~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  313 (334)
T 1ry7_B          234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS  313 (334)
T ss_dssp             EESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEES
T ss_pred             EeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCC
Confidence            8999999999999999999999999    6665543221  111111       11236999999999999999999999


Q ss_pred             CceeEEEEEEEEEec
Q psy14060        212 GGKAKCSANLVVEEK  226 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~  226 (283)
                      .|.....+.|.|...
T Consensus       314 ~G~~~~~~~l~V~~~  328 (334)
T 1ry7_B          314 IGFSHHSAWLVVLPA  328 (334)
T ss_dssp             SCCEEEEEEEEEECS
T ss_pred             CCeEEEEEEEEEEEC
Confidence            999999999999863

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=3.5e-20  Score=142.40  Aligned_cols=159  Identities=9%  Similarity=0.015  Sum_probs=110.4

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEE-----EcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME-----HKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ++|.+...+...+.+|+.|+|.|.+.+.+....+...+......     .......|.|.+++.+|+|.|+|.+.|..+.
T Consensus         3 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~   82 (188)
T 1oll_A            3 PKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELW   82 (188)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCEEEeecCCcCCCCCCEEEEEecCCCCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCC
Confidence            35666655555688899999999998765322333332221111     1235678999999999999999999886542


Q ss_pred             ---eeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCC
Q psy14060        123 ---SDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQV  196 (283)
Q Consensus       123 ---~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~  196 (283)
                         +....+.+   ..+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+..    ..........|.|.++
T Consensus        83 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v  156 (188)
T 1oll_A           83 SEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPV  156 (188)
T ss_dssp             CCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEEC
T ss_pred             CCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeEEEECCC
Confidence               12222222   2356665544 456889999999999876 5679999999876542    1223345678999999


Q ss_pred             CCCCCEEEEEEEEeCC
Q psy14060        197 FMEDSGVFAVIAENRG  212 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~  212 (283)
                      ..+|+|.|+|.|.|..
T Consensus       157 ~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          157 TTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             CGGGCEEEEEECEEET
T ss_pred             CcCCCcEEEEEEEcCC
Confidence            9999999999998864

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.84  E-value=2.3e-19  Score=137.79  Aligned_cols=137  Identities=12%  Similarity=0.169  Sum_probs=114.3

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEe-CCEecCC-CCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFR-EDFPITS-SPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ++.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..++.+.. ......|.|.++..+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            45677778888999999999999999876 78999999 8877763 34555433 356778999999999999999999


Q ss_pred             EeCC-ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        209 ENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       209 ~n~~-g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .|.. +.....+.|.|.          .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        82 ~~~~~~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  143 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIF----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL  143 (191)
T ss_dssp             EETTTEEEEEEEEEEEE----------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGG
T ss_pred             EcCCCcceEEEEEEEee----------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeec
Confidence            9998 455566777776          378888888888999999999999999999999999999998864

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=6.8e-20  Score=139.70  Aligned_cols=137  Identities=12%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--KSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.|...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+.....  ...|.|.++..+|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            3556667777889999999999999998999999999999987665544444333  46799999999999999999999


Q ss_pred             CCce-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecC
Q psy14060        211 RGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       211 ~~g~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~  279 (283)
                      ..+. ....+.|.|..          +|.+...+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+..
T Consensus        82 ~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~  142 (182)
T 1rhf_A           82 GGETEISQPVWLTVEG----------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG  142 (182)
T ss_dssp             CTTCEECCCEEEEEEC----------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC
T ss_pred             CCCcEEEEEEEEEEec----------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCC
Confidence            8765 34567788874          7888888888899999999999999999999 9999999998854

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=1.3e-20  Score=145.89  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=108.6

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEE-----EEcCCEEEEEEccCCCCCCeEEEEEEEecc-e
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEM-----EHKGKIQERVVDASELDDDGYYAITERKYY-A  121 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-~  121 (283)
                      ++|.+...+...+.+|+.++|.|.+.+.+....|...+.....     ........|.|.+++.+|+|.|+|.+.|.. +
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g   83 (198)
T 1ugn_A            4 PKPTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAG   83 (198)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTE
T ss_pred             CCCeEeccCCCcccCCCcEEEEEEecCCCcEEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCC
Confidence            4566666555568889999999999988843344433322210     001134579999999999999999999976 4


Q ss_pred             e---eeeeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEE-EeCCEEEEEE
Q psy14060        122 L---SDLSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIH-TFSTKSILIM  193 (283)
Q Consensus       122 ~---~~~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~-~~~~~~~l~i  193 (283)
                      .   +....+.+.   .+|.+...+ ...+..|+.+.|.|.+.+. .+.+.|+|++..+.... .+... .......|.|
T Consensus        84 ~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i  161 (198)
T 1ugn_A           84 RSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSV  161 (198)
T ss_dssp             ECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEE
T ss_pred             cccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEe
Confidence            1   222223332   245554443 3678899999999999987 78999999998764321 11111 1223568999


Q ss_pred             cCCCCCCCEEEEEEEEeCCc
Q psy14060        194 RQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .++..+|+|.|+|.|.|..+
T Consensus       162 ~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          162 GPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CCCCTTSCEEEEEEEECTTS
T ss_pred             cccCcccCeEEEEEEEeCCC
Confidence            99999999999999999865

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=150.97  Aligned_cols=200  Identities=8%  Similarity=-0.040  Sum_probs=124.3

Q ss_pred             ceEEEEEcCCee---eeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-cceEEeecC--CCEEEEEc
Q psy14060         20 LKSRTASSDRSG---VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-EIVRKITAT--ETTEMEHK   93 (283)
Q Consensus        20 ~~~~~a~n~~g~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~~~~~~~--~~~~~~~~   93 (283)
                      .+.|.|.|..|.   .+....+.|..+...... .........+.+|+.+.|.|.+.+.. .+. +....  ........
T Consensus        65 ~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~-~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~-w~~~~~~~~~~~~~~  142 (289)
T 3mjg_X           65 EYFCTHNDSRGLETDERKRLYIFVPDPTVGFLP-NDAEELFIFLTEITEITIPCRVTDPQLVVT-LHEKKGDVALPVPYD  142 (289)
T ss_dssp             EEEEECCC------CCCEEEEEECCCTTCCBCC-CCHHHHEEEESSCCCEEECCCBSCTTSCEE-EEESSCCSCCCCCEE
T ss_pred             EEEEEEcccCCCCcCcEEeEEEEEECCCcCccc-CCCCcceEEeecCCeEEEEeEcCCCCceEE-EEeCCCCCccceeec
Confidence            478999999887   345555555543221111 11100002366788999999998422 443 22221  11111111


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEecceeee--e--eccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKYYALSD--L--SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR  169 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~--~--~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k  169 (283)
                      ..... .    ...|+|.|+|.+.|..+...  .  ..+....+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus       143 ~~~~~-~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~  217 (289)
T 3mjg_X          143 HQRGF-S----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY  217 (289)
T ss_dssp             TTTEE-E----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEEC
T ss_pred             CCcCe-e----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEc
Confidence            11111 1    36799999999998766322  1  12222246666666666789999999999999999999999998


Q ss_pred             CCEecCCCCCeEEEE-----eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEec
Q psy14060        170 EDFPITSSPDFQIHT-----FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK  226 (283)
Q Consensus       170 ~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  226 (283)
                      ++.............     ......|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~  279 (289)
T 3mjg_X          218 PRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV  279 (289)
T ss_dssp             TTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             CCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEE
Confidence            776543322211111     113467999999999999999999999999999999998863

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.84  E-value=9.4e-21  Score=155.25  Aligned_cols=199  Identities=11%  Similarity=0.017  Sum_probs=135.5

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCcc-ce-EEeec-------CCCEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKE-IV-RKITA-------TETTEM   90 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~-i~-~~~~~-------~~~~~~   90 (283)
                      .+.|.|.|..|..+....|.|..++...    ........+.+|+.+.|.|.+.+... .. .|...       ..++..
T Consensus        65 ~Y~C~~~n~~~~~~~~~~l~V~~~~~~~----~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~  140 (292)
T 4dkd_C           65 TYRCTEPGDPLGGSAAIHLYVKDPARPW----NVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF  140 (292)
T ss_dssp             CEEECCCC----CCEEECCEECCSSCCE----EESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEEC
T ss_pred             EEEEEEccCCCCcceEEEEEEcCccccc----cccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccc
Confidence            3789999999988888889988765321    11111123667889999999998431 11 33222       223333


Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeeecC-C
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-P  163 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~  163 (283)
                      ...   ..|.|.+++.+|+|.|+|.+.|..+..  ....+.+.    .+|.+...+....+..|+.+.|.|.+.+.|. +
T Consensus       141 ~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~  217 (292)
T 4dkd_C          141 SPW---HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF  217 (292)
T ss_dssp             CSS---SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCC
T ss_pred             cCC---ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCce
Confidence            322   239999999999999999999876632  22333333    3888888877777789999999999998664 5


Q ss_pred             EEEEEeCCEecCCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        164 TIKWFREDFPITSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       164 ~~~W~k~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+.|++++..+..........  ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       218 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          218 DVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             EEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             EEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            788999987665432211110  11234799999999999999999999999999888888875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.84  E-value=1.1e-21  Score=170.15  Aligned_cols=218  Identities=10%  Similarity=0.077  Sum_probs=134.9

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEeec-------------------------CCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKITA-------------------------TETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~~-------------------------~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|+.++|.|.+.+.+    .+ .|...                         ..|+.+..+  ++...|.|.+++.+
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (434)
T 1igy_B           10 LARPGASVKMSCKASGYTFTTYTI-HWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD   88 (434)
T ss_dssp             EECTBCCEEECCEECSSCGGGCCC-EEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGG
T ss_pred             EecCCCCEEEEEEccCCcccCceE-EEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChH
Confidence            467788999999998863    23 33221                         124443321  23568999999999


Q ss_pred             CCeEEEEEEEeccee-eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCe
Q psy14060        108 DDGYYAITERKYYAL-SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDF  180 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~-~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~  180 (283)
                      |+|.|+|.+.|..+. .....+.+    ..+|.+........+..|+.+.|.|.+.|. |.+ .+.|++++..+......
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~  168 (434)
T 1igy_B           89 DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP  168 (434)
T ss_dssp             GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECC
T ss_pred             HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecC
Confidence            999999999885321 11112222    234544433333445789999999999986 766 99999998753210000


Q ss_pred             EEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccC-CC--CCCCCCCeEEecCCceE-EcCCCe
Q psy14060        181 QIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ-GG--RGGVVPPSFLTTISSAV-INVGQL  253 (283)
Q Consensus       181 ~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-~~--~~~~~~p~~~~~~~~~~-v~~g~~  253 (283)
                      .....+   ..+.|.|..+..+| |.|+|.|.|..+.......+.+....- ..  .....|..+...+.... +.+|+.
T Consensus       169 ~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~  247 (434)
T 1igy_B          169 AVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVT  247 (434)
T ss_dssp             CEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSC
T ss_pred             ceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCC
Confidence            000001   12468999999889 999999999988754444443221000 00  00001233333333222 789999


Q ss_pred             EEEEEEEEeeC----CCeeEEeeCCEEec
Q psy14060        254 ARFDAKISATK----PLDVYWLKVSSLSD  278 (283)
Q Consensus       254 v~L~C~~~g~p----~~~v~W~~~g~~l~  278 (283)
                      +.|.|.+.|.+    .+.|.|+++|..+.
T Consensus       248 ~~L~C~~~g~~p~P~~~~i~W~k~~~~~~  276 (434)
T 1igy_B          248 PKVTCVVVDISKDDPEVQFSWFVDNVEVH  276 (434)
T ss_dssp             CEEEEEECCCCSSCCCCCBCBBSSSCCBC
T ss_pred             cEEEEEEeccccCCCCeEEEEEeCCcccC
Confidence            99999999874    34899999997764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=1.6e-20  Score=146.49  Aligned_cols=163  Identities=17%  Similarity=0.154  Sum_probs=116.0

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA------------------TETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+.+|+.+.|.|.+.|.|... .|...                  ..++....    ..|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G~Y~C~~~~~   87 (212)
T 1f97_A           12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNGEYTCMVSEE   87 (212)
T ss_dssp             EEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCEEEEEEEEET
T ss_pred             EEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCeEEEEEEEcc
Confidence            366788999999999877322 22221                  23333331    67999999999999999999997


Q ss_pred             ce---eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEE-EeeecCCEEEEEeCCE-ecCCCCC-------eEEEEeCC
Q psy14060        120 YA---LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDF-PITSSPD-------FQIHTFST  187 (283)
Q Consensus       120 ~~---~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~~~W~k~~~-~~~~~~~-------~~~~~~~~  187 (283)
                      .+   ......+.+..+|.+........+..|+.+.|.|. +.+.|.+.+.|++++. .+.....       ........
T Consensus        88 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~  167 (212)
T 1f97_A           88 GGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK  167 (212)
T ss_dssp             TSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTT
T ss_pred             CCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCC
Confidence            54   23334445555665554445567889999999999 6889999999999999 7764322       11222233


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEeCCceeEE--EEEEEEEe
Q psy14060        188 KSILIMRQVFMEDSGVFAVIAENRGGKAKC--SANLVVEE  225 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~  225 (283)
                      ...|.|.++..+|.|.|+|.|.|..|....  .+.|.|.+
T Consensus       168 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          168 SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            457999999999999999999999998733  45666554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.84  E-value=3.4e-20  Score=140.75  Aligned_cols=163  Identities=9%  Similarity=0.031  Sum_probs=115.3

Q ss_pred             CCCceeeecCC-eeeecCcEEEEEEEccCccc--eEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee
Q psy14060         48 PEPSASGVHGK-EIHTAKSQQVQKEKKGDKEI--VRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD  124 (283)
Q Consensus        48 ~~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~  124 (283)
                      ++|.+...+.. .+.+|+.+.|.|.+.+.+..  ..|...+...  .  .....|.|.+++.+|+|.|+|.+.|..... 
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~--~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~-   80 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI--S--SQASSYFIDAATVNDSGEYRCQTNLSTLSD-   80 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEE--E--SSCSEEEESSCCGGGCEEEEEECSSSCCCC-
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEc--c--CCceEEEEeCCCcccCEEEEEEeeCCcccc-
Confidence            45666655553 68889999999999998732  2455443322  2  245689999999999999999998865422 


Q ss_pred             eeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ...+.+..++.... .....+..|+.+.|.|.+.+.+.+ .+.|+|++..+...        .....|.|.++..+|+|.
T Consensus        81 ~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~  151 (175)
T 1fnl_A           81 PVQLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGS  151 (175)
T ss_dssp             CEEEEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEE
T ss_pred             cEEEEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--------CCCCEEEEcccChhhCeE
Confidence            22233333444333 344678899999999999876654 99999999876321        112359999999999999


Q ss_pred             EEEEEEeCCce-eEEEEEEEEE
Q psy14060        204 FAVIAENRGGK-AKCSANLVVE  224 (283)
Q Consensus       204 Y~C~a~n~~g~-~~~~~~l~v~  224 (283)
                      |+|.|.|..+. .+..+.|.|.
T Consensus       152 Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          152 YFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEEcCCCCccCccEEEEEe
Confidence            99999997664 3334666665

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=4.7e-19  Score=141.85  Aligned_cols=166  Identities=10%  Similarity=0.082  Sum_probs=115.1

Q ss_pred             eeeecCcEEEEEEEccCc--cce-EEee-------------------------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-RKIT-------------------------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-~~~~-------------------------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.++|.|.+.|.|  ... .|..                         ...++.+..  .++..+|.|.+++.+|
T Consensus        13 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   92 (247)
T 2ghw_B           13 VVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAED   92 (247)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHH
Confidence            467788999999999875  211 2322                         124666554  2457899999999999


Q ss_pred             CeEEEEEEEeccee---eeeeccCCC---------------CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe-
Q psy14060        109 DGYYAITERKYYAL---SDLSEQKPA---------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-  169 (283)
Q Consensus       109 ~G~Y~C~a~n~~~~---~~~~~~~~~---------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k-  169 (283)
                      +|.|+|.+.|..+.   .....+.+.               .++.+...+....+.+|+++.|.|.+.+.|.+.+.|+| 
T Consensus        93 ~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  172 (247)
T 2ghw_B           93 TAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQ  172 (247)
T ss_dssp             CEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEE
Confidence            99999999987221   111122222               24455666677789999999999999998889999999 


Q ss_pred             -CCEec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEE
Q psy14060        170 -EDFPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVE  224 (283)
Q Consensus       170 -~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  224 (283)
                       ++..+            ....++.+.......+|.|.++..+|+|.|+|.+.|...... ....|.|.
T Consensus       173 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          173 KPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence             44432            112355554445567899999999999999999988643322 22455554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.84  E-value=2.5e-20  Score=150.94  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=133.8

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQER   99 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L   99 (283)
                      -+.|.|+|..|..+....|.|...+.    |.+.. ....+.+|+.+.|.|.+...+.+ .|  .+...  ...+....|
T Consensus        75 ~Y~C~a~n~~~~~~~~~~l~V~~~p~----p~~~~-~~~~v~~G~~v~l~C~~~p~~~i-~W--~g~~~--~~~~~~~~l  144 (265)
T 2oz4_A           75 RLTCAVILGNQSQETLQTVTIYSFPA----PNVIL-TKPEVSEGTEVTVKCEAHPRAKV-TL--NGVPA--QPLGPRAQL  144 (265)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCC----CEEEE-SCSEEETTCEEEEEEECCTTSEE-EE--SSCSS--SCCSSEECC
T ss_pred             eEEEEEecCCCCcEEEEEEEEeCCCC----ceeec-CCceecCCCcEEEEEEccCCCEE-EE--CCEEc--cCCCCcEEE
Confidence            48899999999999999999987532    33332 23347789999999999833344 44  22222  223456778


Q ss_pred             EEccCCCCCCeEEEEEEEecc-eee----eeeccCCCCCCeEEec--CCceeecCCCcEEEEEEEeeecCCEEEEEeCCE
Q psy14060        100 VVDASELDDDGYYAITERKYY-ALS----DLSEQKPAKPPVFTKK--IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF  172 (283)
Q Consensus       100 ~i~~~~~~D~G~Y~C~a~n~~-~~~----~~~~~~~~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~  172 (283)
                      .|..+..+|.|.|+|.+.|.. |..    ....+.+..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       145 ~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             EEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             EEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            899999999999999998643 321    3344555556655433  345678899999999999999999999999987


Q ss_pred             ecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        173 PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+.....           +.  .+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       225 ~~~~~g~-----------~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          225 FPLPIGE-----------SV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             EECCTTS-----------CE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCCCCc-----------EE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            3332211           21  2777999999999999999999999988873

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=147.32  Aligned_cols=155  Identities=13%  Similarity=0.289  Sum_probs=116.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccCCC----
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQKPA----  131 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~~~----  131 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+...   ..+....|.|.+++.+|+|.|+|.+.|..+..  ....+.+.    
T Consensus        29 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~  105 (218)
T 3k0w_A           29 AVLAGQFVKLCCRATGHPFVQYQWFKMNKEI---PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE  105 (218)
T ss_dssp             EEETTSBEEEECEETTTTSSEEEEEETTEEC---TTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCG
T ss_pred             EEeCCCcEEEEeeecCCCCCEEEEEECCEEC---CCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCc
Confidence            467788999999999987433 444332211   11234579999999999999999999986632  11122221    


Q ss_pred             -----------CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        132 -----------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       132 -----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                                 .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|.++..+|
T Consensus       106 ~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d  176 (218)
T 3k0w_A          106 SFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEH  176 (218)
T ss_dssp             GGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGG
T ss_pred             ccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeecChhc
Confidence                       236777777788899999999999999999999999999998875432         369999999999


Q ss_pred             CEEEEEEEEeCCce-eEEEEEEEEEe
Q psy14060        201 SGVFAVIAENRGGK-AKCSANLVVEE  225 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~-~~~~~~l~v~~  225 (283)
                      .|.|+|.|.|..|. .+..+.|.|..
T Consensus       177 ~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          177 QGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             CEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             CEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            99999999998887 44456666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.84  E-value=8.5e-20  Score=153.66  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=127.1

Q ss_pred             CCceeeecC-CeeeecCcEEEEEEEccCccce-EEeecCCCEEEE----EcCCEEEEEEccCCCCCCe-EEEEEEEecce
Q psy14060         49 EPSASGVHG-KEIHTAKSQQVQKEKKGDKEIV-RKITATETTEME----HKGKIQERVVDASELDDDG-YYAITERKYYA  121 (283)
Q Consensus        49 ~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~  121 (283)
                      .|.+..... ..+.+|+.+.|.|.+.|.|... .|..........    .......|.|.+++.+|+| .|+|.+.|..+
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g  237 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG  237 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCC
Confidence            455554332 2477888999999999988332 333332211111    2235788999999999999 99999999987


Q ss_pred             e-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-------CEEEEEE
Q psy14060        122 L-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-------TKSILIM  193 (283)
Q Consensus       122 ~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-------~~~~l~i  193 (283)
                      . .....+.+..+|.+    .......|+.+.|.|.+.|.|.|.+.|++++..+............       ...+|.|
T Consensus       238 ~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I  313 (347)
T 2ifg_A          238 RAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL  313 (347)
T ss_dssp             ECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEE
T ss_pred             CEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEE
Confidence            4 34455666666764    1123456899999999999999999999999998865544332221       2557999


Q ss_pred             cCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .++..+|+|.|+|.|.|..|.....+.+.|.+
T Consensus       314 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          314 NQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             CCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            99999999999999999999988888887764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.84  E-value=3.9e-19  Score=147.33  Aligned_cols=193  Identities=11%  Similarity=0.024  Sum_probs=132.7

Q ss_pred             eEEEEE-cCCeeeeeeeEEEEeCCCCCCCCCceeeecCC-eeeecCcEEEEEEEc-cCccce-EEeecCCCEEEE-----
Q psy14060         21 KSRTAS-SDRSGVSTEETKIIDGRKVSVPEPSASGVHGK-EIHTAKSQQVQKEKK-GDKEIV-RKITATETTEME-----   91 (283)
Q Consensus        21 ~~~~a~-n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~-~v~~g~~v~l~C~~~-g~~~i~-~~~~~~~~~~~~-----   91 (283)
                      +.|.|. +..|..+....|.+...|      .+...... .+..++.+.+.|.+. |.|... .|..........     
T Consensus        94 Y~C~v~~~~~~~~~~~~~l~v~~~P------~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~  167 (313)
T 4fqp_A           94 YTCLFVTFPQGSRSVDIWLRVLAKP------QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPG  167 (313)
T ss_dssp             EEEEEECSSSCEEEEEEEECCBBCC------EEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEEC
T ss_pred             EEEEEeeccCcceeeeeeeeeccCC------cceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeee
Confidence            456664 556667777777666543      33322222 244455688899775 556333 444333222111     


Q ss_pred             -EcCC---EEEEEEccCCCCCCeEEEEEEEeccee---eeeeccCCCCCCeEEec-CCceeecCCCcEEEEEEEeeecCC
Q psy14060         92 -HKGK---IQERVVDASELDDDGYYAITERKYYAL---SDLSEQKPAKPPVFTKK-IQPCRAFEQDQARFEVEFDGDPLP  163 (283)
Q Consensus        92 -~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~  163 (283)
                       ..+.   ...|.|.++...|.|.|+|.+.|..+.   .....+.+..+|.+... .....+..|+.+.|.|.+.|.|.|
T Consensus       168 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p  247 (313)
T 4fqp_A          168 FLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEP  247 (313)
T ss_dssp             SSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCC
T ss_pred             ecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCC
Confidence             1111   245889999999999999999997652   33345666667877544 344556778899999999999998


Q ss_pred             -EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        164 -TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       164 -~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                       .+.|+|++..+....   .. .+  .+|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       248 ~~v~W~~~~~~l~~~~---~~-~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  304 (313)
T 4fqp_A          248 TGYNWSTTMGPLPPFA---VA-QG--AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE  304 (313)
T ss_dssp             CEEEEEETTBSCCTTE---EE-ET--TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cEEEEEECCEECCCce---EE-eC--CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence             699999999876431   11 12  2699999999999999999999999999999999986

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.84  E-value=4.4e-20  Score=144.38  Aligned_cols=161  Identities=12%  Similarity=0.136  Sum_probs=114.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.++|.|.+.|.+... .|..                    ...++.+........|.|.+++.+|+|.|+|.+.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   90 (213)
T 3mj8_L           11 SVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSW   90 (213)
T ss_dssp             EEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEec
Confidence            467788999999999777222 3332                    2346666666778899999999999999999999


Q ss_pred             ecce--e--eeeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEe
Q psy14060        118 KYYA--L--SDLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTF  185 (283)
Q Consensus       118 n~~~--~--~~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~  185 (283)
                      |..+  .  .....+.+.    .+|.+...+....+..|+.+.|.|.+.+. |. +.+.|++++..+.....  ......
T Consensus        91 ~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  170 (213)
T 3mj8_L           91 DGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSD  170 (213)
T ss_dssp             ETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEET
T ss_pred             cCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccC
Confidence            8865  1  112222222    57777766666666689999999999986 33 49999999998864311  001111


Q ss_pred             C---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        186 S---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       186 ~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      +   ....|.|..+..+|.|.|+|.|.|..+.....+
T Consensus       171 ~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          171 SKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            1   124589999999999999999999986655443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.84  E-value=2.9e-20  Score=145.85  Aligned_cols=173  Identities=17%  Similarity=0.225  Sum_probs=118.9

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-EEeecCC--------CEEEEEcCC--EEEEEEccCCCCCCeEEEEEE
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-RKITATE--------TTEMEHKGK--IQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-~~~~~~~--------~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      .|.+...+.. .+.+|+.+.|.|.+.|.|... .|...+.        ...+....+  ...|.|.+++.+|+|.|+|.+
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~   88 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA   88 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEE
Confidence            4444433332 366788999999999877332 3322111        112222222  223478899999999999999


Q ss_pred             Eecceeee--eeccCCCC-CCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCC--------CCeEEEE
Q psy14060        117 RKYYALSD--LSEQKPAK-PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSS--------PDFQIHT  184 (283)
Q Consensus       117 ~n~~~~~~--~~~~~~~~-~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~--------~~~~~~~  184 (283)
                      .|..+...  ...+.+.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+...        .++.+. 
T Consensus        89 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~-  167 (217)
T 2vr9_A           89 KNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV-  167 (217)
T ss_dssp             EETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE-
T ss_pred             ecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec-
Confidence            99877432  22233322 4555556667788999999999999 89999999999999988732        222222 


Q ss_pred             eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       185 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                        ....|.|.++..+|.|.|+|.|.|..|.......+.+.
T Consensus       168 --~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          168 --DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             --TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence              12369999999999999999999999988776555444

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.83  E-value=2.7e-20  Score=144.97  Aligned_cols=165  Identities=10%  Similarity=0.060  Sum_probs=115.8

Q ss_pred             CCCceeeecC-CeeeecCcEEEEEEEccCccc--eEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee
Q psy14060         48 PEPSASGVHG-KEIHTAKSQQVQKEKKGDKEI--VRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD  124 (283)
Q Consensus        48 ~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~i--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~  124 (283)
                      ++|.+...+. ..+.+|+.++|.|.+.+.+..  ..|...+.  .+..  ....|.|.+++.+|+|.|+|.+.|.... .
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~--~l~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~~s-~   80 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNES--LISS--QASSYFIDAATVDDSGEYRCQTQLSTLS-D   80 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTE--EESC--CSSEEEESSCCGGGCEEEEEEETTSBCC-C
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCE--Eccc--CccEEEEecccccCCEEEEEEeCCCccc-c
Confidence            3455555444 358889999999999998732  24444332  2211  2368999999999999999999875332 2


Q ss_pred             eeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ...+.+..+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+|++..+...        .....|.|.++..+|+|.
T Consensus        81 ~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~--------~~~~~L~i~~v~~~D~G~  151 (204)
T 3sgj_C           81 PVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGS  151 (204)
T ss_dssp             CEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEE
T ss_pred             cEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc--------cCCceEEECcCCcccCEE
Confidence            23344445565544443 678899999999999665 56789999999875321        112359999999999999


Q ss_pred             EEEEEEeCC-ceeEEEEEEEEEec
Q psy14060        204 FAVIAENRG-GKAKCSANLVVEEK  226 (283)
Q Consensus       204 Y~C~a~n~~-g~~~~~~~l~v~~~  226 (283)
                      |+|.|.|.. +..+..+.|.|.+.
T Consensus       152 Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          152 YFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEEEEeCCCceecCcEEEEEeCc
Confidence            999999954 44455577887753

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.83  E-value=1.6e-20  Score=145.97  Aligned_cols=126  Identities=13%  Similarity=0.163  Sum_probs=102.1

Q ss_pred             ceeecCCCcEEEEEE---EeeecCCEEEEEeCCEecC-----------------CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        142 PCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPIT-----------------SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~---~~g~p~~~~~W~k~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      .+++..|+.++|.|.   +.+.|.+.++|+|++..+.                 ...++.+........|.|.++..+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            457889999999995   5677999999999764221                 11234556667778999999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      |.|+|.+.|..|.....+.|.|..          ||.+...+....+.+|+.+.|.|.+.|.|.|.|+|++++..+
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~----------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~  147 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE  147 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE----------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC----
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC----------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeee
Confidence            999999999999999889999874          677777777778899999999999999999999999866433

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.83  E-value=1.2e-19  Score=139.39  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=114.9

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...  ...|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN--GQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGG--GTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCC--ccEEEEcCCCcccCeEEEEEEE
Confidence            4467777777778899999999999999999999999999998865 344544332  3369999999999999999999


Q ss_pred             eCCce-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        210 NRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |..|. ......+.|..          +|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...
T Consensus        83 ~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~  144 (192)
T 2iep_A           83 NGVGGAVESCGALQVKM----------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN  144 (192)
T ss_dssp             CSSSCCEEEEEEEEEEE----------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC
T ss_pred             cCCCceeEeEEEEEEEe----------CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC
Confidence            98877 45556777774          577777777888999999999999999999999999999988654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=6.2e-19  Score=135.38  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=109.0

Q ss_pred             CCCeEEecCCceeecC-CCcEEEEEEEeeecC--CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFE-QDQARFEVEFDGDPL--PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~-g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+|.+.. +....+.. |+.+.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++..+|+|.|+|.+
T Consensus         2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~   75 (190)
T 2wv3_A            2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY   75 (190)
T ss_dssp             -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence            3676665 34455666 999999999998887  7899999999887643221     4467999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEee--CCEEec
Q psy14060        209 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK--VSSLSD  278 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~~l~  278 (283)
                      .|. +.....+.|.|..          +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++  +|..+.
T Consensus        76 ~n~-~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           76 HFV-SAPKANATIEVKA----------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             EET-TEEEEEEEEEEEC----------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             EeC-CcccccEEEEEec----------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence            999 8888888888884          7888888888889999999999999999999999999  888775

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=3.1e-20  Score=145.55  Aligned_cols=164  Identities=9%  Similarity=-0.085  Sum_probs=109.0

Q ss_pred             eeeec--CcEEEEEEEccCc-cceEEe--------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee--
Q psy14060         59 EIHTA--KSQQVQKEKKGDK-EIVRKI--------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL--  125 (283)
Q Consensus        59 ~v~~g--~~v~l~C~~~g~~-~i~~~~--------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~--  125 (283)
                      .+.+|  +.++|.|.+.+.+ .++...        ....++...   ....|.|.+++.+|+|.|+|.+.|..+....  
T Consensus        18 ~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~   94 (213)
T 2x1w_L           18 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKINDESYQSIM   94 (213)
T ss_dssp             EECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC----CEECCC
T ss_pred             EEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECCeeEEEEE
Confidence            36678  8999999998743 333111        112233332   2235899999999999999999885442211  


Q ss_pred             eccCC--CCCCeEEecC-CceeecCCCcEEEEEEEeeec--CCEEEEEeCCEecCCCCC-eEEEE-------eCCEEEEE
Q psy14060        126 SEQKP--AKPPVFTKKI-QPCRAFEQDQARFEVEFDGDP--LPTIKWFREDFPITSSPD-FQIHT-------FSTKSILI  192 (283)
Q Consensus       126 ~~~~~--~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~~~~~~~~-~~~~~-------~~~~~~l~  192 (283)
                      ..+.+  ..+|.+...+ ....+..|+.+.|.|.+.|.|  .+.+.|++++..+..... .....       .....+|.
T Consensus        95 ~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  174 (213)
T 2x1w_L           95 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT  174 (213)
T ss_dssp             EEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEE
T ss_pred             EEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEE
Confidence            22222  2244444444 344889999999999999855  358999999876432111 00000       11235799


Q ss_pred             EcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       175 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          175 IDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            999999999999999999999999899999885

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.83  E-value=3.5e-19  Score=151.77  Aligned_cols=137  Identities=21%  Similarity=0.382  Sum_probs=116.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEecCC-----CCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPITS-----SPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +|.+.. +.+..+.+|+.+.|.|.+.|.|.+.+.|+|+  +..+..     ..++.+........|.|.++..+|+|.|.
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            456555 5667788899999999999999999999999  887764     34566665556788999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        206 VIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.|.|..|.....+.|.|..          +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|+.+...
T Consensus        80 C~a~n~~g~~~~~~~l~V~~----------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~  144 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEY----------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAK  144 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEE----------EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCT
T ss_pred             EEEEeCCCCcceEEEEEEEe----------CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcc
Confidence            99999999988889999885          677766555557899999999999999999999999999998754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.83  E-value=2.5e-19  Score=139.79  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC--CEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .|.|.... ...+.+|+.+.|.|.+.+ .|.|.++|+|++..+..+.++.+....  ....|.|.++..+|+|.|+|.|.
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            34444433 578899999999999964 699999999999999887777776654  56689999999999999999999


Q ss_pred             eCCceeEEEEEEEEEecc-C-------CC---CCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCCeeEEeeCCEEe
Q psy14060        210 NRGGKAKCSANLVVEEKR-Q-------GG---RGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLKVSSLS  277 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~-~-------~~---~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~l  277 (283)
                      |  |.......+.+.... .       ..   .....+|.|...+ ...+.+|+.+.|.|.+.|. |.|.|+|+|||++|
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence            9  444443333221000 0       00   0000267777665 4788999999999999998 99999999999998


Q ss_pred             cCC
Q psy14060        278 DVK  280 (283)
Q Consensus       278 ~~~  280 (283)
                      ...
T Consensus       159 ~~~  161 (207)
T 3rbs_A          159 SVD  161 (207)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=141.09  Aligned_cols=156  Identities=11%  Similarity=0.074  Sum_probs=110.3

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee---ee
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL---SD  124 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~  124 (283)
                      ++|.+...+...+.+|+.++|.|.+.+.+....|...+.. . ..  ....|.|.+++.+|+|.|+|.+.|..+.   +.
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~-~-~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~   82 (184)
T 2gi7_A            7 PKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSS-R-YQ--DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSD   82 (184)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECSTTCSEEEEEETTTC-C-EE--SSSEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred             CCCeEEeCCCccccCCCcEEEEEeCCCCCCEEEEEECCcc-c-cC--cccEEEECcCChhhCceEEEEEEcCCCccCCCC
Confidence            4666665555568889999999999884322255544433 1 11  3457999999999999999999997652   11


Q ss_pred             eeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        125 LSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       125 ~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ...+.+   ..+|.+...+ ...+..|+.+.|.|.+.+ +.+.+.|+|++..+.......    .....|.|.++..+|+
T Consensus        83 ~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~-~~~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~  156 (184)
T 2gi7_A           83 QLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPER----WYRASFPIITVTAAHS  156 (184)
T ss_dssp             CEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSS-CCCEEEEEECCCCTTSCCCCE----EEEESSSEEEETTCCS
T ss_pred             CEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCC-CCcEEEEEECCCcCcceecCC----CceEEEEEccCCccCC
Confidence            122222   3456665554 456788999999999876 457999999998776532211    1233588999999999


Q ss_pred             EEEEEEEEeCCc
Q psy14060        202 GVFAVIAENRGG  213 (283)
Q Consensus       202 G~Y~C~a~n~~g  213 (283)
                      |.|+|.|.|..+
T Consensus       157 G~Y~C~a~n~~~  168 (184)
T 2gi7_A          157 GTYRCYSFSSRD  168 (184)
T ss_dssp             EEEEEEEECTTS
T ss_pred             eEEEEEEEeCCC
Confidence            999999999754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=149.73  Aligned_cols=196  Identities=9%  Similarity=-0.037  Sum_probs=133.9

Q ss_pred             eEEEEEcC-CeeeeeeeEEEEeCCCCCCCCCceeeecCC-eeeecCcEEEEEEE-ccCccce-EEeecCCCEEEE---E-
Q psy14060         21 KSRTASSD-RSGVSTEETKIIDGRKVSVPEPSASGVHGK-EIHTAKSQQVQKEK-KGDKEIV-RKITATETTEME---H-   92 (283)
Q Consensus        21 ~~~~a~n~-~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~-~v~~g~~v~l~C~~-~g~~~i~-~~~~~~~~~~~~---~-   92 (283)
                      +.|+|.|. .|..+....+.+...+...    +...... ....|+.+.|.|.+ .|.|... .|..........   . 
T Consensus        89 Y~C~a~n~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~  164 (308)
T 4fom_A           89 YICKAVTFPLGNAQSSTTVTVLVEPTVS----LIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFP  164 (308)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEEBCCEEE----EEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECT
T ss_pred             EEEEEeeCCCcceeeeeEEEeeeccccc----cccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceee
Confidence            67889885 6667777777777654311    1111111 12234579999976 5777333 343332221111   0 


Q ss_pred             c---CCEEEEEEccCCCCCCeEEEEEEEeccee---eeeeccCCCCCCeEEecC-CceeecCCCcEEEEEEEeeecCC-E
Q psy14060         93 K---GKIQERVVDASELDDDGYYAITERKYYAL---SDLSEQKPAKPPVFTKKI-QPCRAFEQDQARFEVEFDGDPLP-T  164 (283)
Q Consensus        93 ~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~-~  164 (283)
                      .   .....|.|.++..+|.|.|+|.+.|..+.   .....+.+..+|.+...+ ....+..|+.+.|.|.+.|.|.| .
T Consensus       165 ~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~  244 (308)
T 4fom_A          165 NETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFK  244 (308)
T ss_dssp             TSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEE
T ss_pred             eecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcE
Confidence            0   02346999999999999999999998652   334456676777765443 33456778999999999999988 6


Q ss_pred             EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        165 IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       165 ~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +.|+|++..+.....     ......|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       245 v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          245 SVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             EECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             EEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            999999887754321     11234467889999999999999999999999999999885

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.83  E-value=5.4e-20  Score=146.53  Aligned_cols=167  Identities=14%  Similarity=0.160  Sum_probs=116.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecC------CCE-EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITAT------ETT-EMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQK  129 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~------~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~  129 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+      .+. ..........|.|.+++.+|+|.|+|.+.|..+.. ....+.
T Consensus        26 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~  105 (241)
T 3grw_A           26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD  105 (241)
T ss_dssp             EEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEE
Confidence            466788999999999987332 333221      111 11112234579999999999999999999987732 222222


Q ss_pred             C----CCCCeEEe-cCCceeecCCCcEEEEEEEeeecCCEEEEEe----CCEecCCCCCe--EEEE------eCCEEEEE
Q psy14060        130 P----AKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLPTIKWFR----EDFPITSSPDF--QIHT------FSTKSILI  192 (283)
Q Consensus       130 ~----~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k----~~~~~~~~~~~--~~~~------~~~~~~l~  192 (283)
                      +    ..+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+......  ....      ......|.
T Consensus       106 V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  185 (241)
T 3grw_A          106 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR  185 (241)
T ss_dssp             EECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEE
T ss_pred             EeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEE
Confidence            2    12343333 3566778899999999999999999999999    77776543321  1111      01245799


Q ss_pred             EcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus       186 i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             ECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence            999999999999999999999999888988875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.83  E-value=8.4e-20  Score=141.91  Aligned_cols=164  Identities=9%  Similarity=-0.010  Sum_probs=109.3

Q ss_pred             eecCcEEEEEEEccCccce-EEeecCC---CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCe
Q psy14060         61 HTAKSQQVQKEKKGDKEIV-RKITATE---TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPV  135 (283)
Q Consensus        61 ~~g~~v~l~C~~~g~~~i~-~~~~~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~  135 (283)
                      .+|+.+.|.|.+.|.|... .|.....   .......+....|.|.+++.+|+|.|.|.+.|..+. .....+.+..+|.
T Consensus        14 ~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~   93 (202)
T 1vca_A           14 QIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK   93 (202)
T ss_dssp             ETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCS
T ss_pred             cCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCC
Confidence            3688999999999988432 4433111   112223345677999999999999999999998773 3333444444443


Q ss_pred             E-EecCCceeecCCCcEEEEEEEeeecC---CEEEEEeCCEecCCCCCeEE----EEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        136 F-TKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDFQI----HTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       136 ~-~~~~~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      . ...+. ..+..|+.++|.|.+.+.++   +.+.|+|++..+........    ........|.|.....+|.|.|+|.
T Consensus        94 ~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~  172 (202)
T 1vca_A           94 DPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCR  172 (202)
T ss_dssp             CCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred             CCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEE
Confidence            2 22222 56889999999999988643   47999999987643210000    0011134577888888899999999


Q ss_pred             EEeCCce-------eEEEEEEEEEe
Q psy14060        208 AENRGGK-------AKCSANLVVEE  225 (283)
Q Consensus       208 a~n~~g~-------~~~~~~l~v~~  225 (283)
                      |.|..+.       ......|.|..
T Consensus       173 A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          173 AKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             EEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             EEccccCCCCcceeEeeEEEEEEec
Confidence            9998765       34556777773

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.83  E-value=2.2e-19  Score=149.76  Aligned_cols=196  Identities=11%  Similarity=0.049  Sum_probs=137.3

Q ss_pred             eEEE-EEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeec---CcEEEEEE-EccCccce-EEeecCCCEE----E
Q psy14060         21 KSRT-ASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTA---KSQQVQKE-KKGDKEIV-RKITATETTE----M   90 (283)
Q Consensus        21 ~~~~-a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g---~~v~l~C~-~~g~~~i~-~~~~~~~~~~----~   90 (283)
                      +.|. +.|..|..+....|.|...+.....+   ......+.+|   +.+.|.|. ..|.|... .|........    .
T Consensus       107 Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  183 (331)
T 3u83_A          107 YICEFATFPTGNRESQLNLTVMAKPTNWIEG---TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI  183 (331)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEBCCEEEEEE---CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             EEEEEEecCCCccEEEEEEEEecCCcceeec---CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccccee
Confidence            4565 77778888888899998854321000   0011124455   56999998 77877433 3433211111    1


Q ss_pred             EEcCC----EEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEec-CCceeecCCCcEEEEEEEeeecCCE
Q psy14060         91 EHKGK----IQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKK-IQPCRAFEQDQARFEVEFDGDPLPT  164 (283)
Q Consensus        91 ~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~  164 (283)
                      ....+    ...|.|.++..+|+|.|+|.+.|..+. .....+.+..+|.+... .....+..|+.+.|.|.+.+.|.|.
T Consensus       184 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  263 (331)
T 3u83_A          184 RNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPAT  263 (331)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCC
T ss_pred             ECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCC
Confidence            11111    356889999999999999999999774 44455666667766543 3445688899999999999999997


Q ss_pred             -EEEEeCCEecCCCCCeEEEEeCCEEEEEEc-CCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        165 -IKWFREDFPITSSPDFQIHTFSTKSILIMR-QVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       165 -~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                       +.|++++..+...  ...  ..  .+|.|. ++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus       264 ~i~W~~~~~~~~~~--~~~--~~--~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          264 EYHWTTLNGSLPKG--VEA--QN--RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             EEEEEETTBSCCTT--EEE--ET--TEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             EEEEEECCCccccc--cee--cC--cEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence             9999999887643  111  12  369999 8999999999999999999998888888875

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.82  E-value=1.1e-19  Score=142.91  Aligned_cols=173  Identities=15%  Similarity=0.084  Sum_probs=114.8

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEE-----EcCCEE--EEEEccCCCCCCeEEEEEEEecc
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME-----HKGKIQ--ERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~-----~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ++|.+...+...+.+|+.|+|.|.+.+.+....|...+......     ......  .|.|.+++.+|+|.|+|.+.|..
T Consensus         8 ~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   87 (218)
T 1uct_A            8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   87 (218)
T ss_dssp             CCCCEEESSCSEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEecCCCccCCCCCEEEEEEcCCCCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCC
Confidence            46666655555688899999999998744222343333222211     111234  89999999999999999999975


Q ss_pred             ee---eeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEc
Q psy14060        121 AL---SDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMR  194 (283)
Q Consensus       121 ~~---~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~  194 (283)
                      +.   +....+.+   ..+|.+...+ ...+.+|+.++|.|...+.|.+.+.|+|+|..+...    .........|.|.
T Consensus        88 ~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~~~L~I~  162 (218)
T 1uct_A           88 YRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLG  162 (218)
T ss_dssp             TEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECC
T ss_pred             CceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCccCEEEEc
Confidence            41   12222222   2356665444 457889999999997777788899999999876541    1123345679999


Q ss_pred             CCCCCCCEEEEEEEEeCCce-----eEEEEEEEEEe
Q psy14060        195 QVFMEDSGVFAVIAENRGGK-----AKCSANLVVEE  225 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~  225 (283)
                      ++..+|+|.|+|.|.|....     .+..+.|.|..
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          163 PVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             SCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             cCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            99999999999999986421     22335565554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=7e-20  Score=142.90  Aligned_cols=164  Identities=18%  Similarity=0.242  Sum_probs=115.1

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCC-----------CEEEEEcCCEE--EEEEccCCCCCCeEEEEEEEecceee-
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATE-----------TTEMEHKGKIQ--ERVVDASELDDDGYYAITERKYYALS-  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~-----------~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~~~~-  123 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+.           .......+...  .|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus        20 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~   99 (212)
T 2v9r_A           20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV   99 (212)
T ss_dssp             EECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEE
T ss_pred             EEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCcee
Confidence            366788999999999877332 3322211           11111222222  34556789999999999999987743 


Q ss_pred             -eeeccCCCC-CCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        124 -DLSEQKPAK-PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       124 -~~~~~~~~~-~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                       ....+.+.. ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... +  ..|.|.++..+|
T Consensus       100 ~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~--~~L~i~~~~~~d  176 (212)
T 2v9r_A          100 SHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-G--GKLMITYTRKSD  176 (212)
T ss_dssp             CCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-T--TEEEESSCCGGG
T ss_pred             ecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-C--CeEEEeeCCHhh
Confidence             222333322 4444555666788999999999998 899999999999999887643322222 2  269999999999


Q ss_pred             CEEEEEEEEeCCceeEEE-EEEEEEe
Q psy14060        201 SGVFAVIAENRGGKAKCS-ANLVVEE  225 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~-~~l~v~~  225 (283)
                      .|.|+|.|.|..|...+. +.|.|..
T Consensus       177 ~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          177 AGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeeEEEEEecccCceecceEEEEEEe
Confidence            999999999999986654 7888874

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.82  E-value=3.4e-19  Score=138.66  Aligned_cols=158  Identities=10%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec-------------------------CCCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA-------------------------TETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~-------------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|+.++|.|...+.+... .|...                         ..++.+.   ....|.|.+++.+|+|.|
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             EEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCEEE
T ss_pred             eeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCeEE
Confidence            478899999999977766322 33322                         1122222   123699999999999999


Q ss_pred             EEEEEecce--eeeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCC
Q psy14060        113 AITERKYYA--LSDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST  187 (283)
Q Consensus       113 ~C~a~n~~~--~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~  187 (283)
                      +|.+.+..+  ......+.+   ...|.+......  +..|+.+.|.|.+.+.| +.+.|++++..+....++.+...  
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~--  161 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQN--  161 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETT--
T ss_pred             EEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCC--
Confidence            999998853  222222222   233555544443  88899999999999855 89999999999887666655433  


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEeCCceeEEE-EEEEEE
Q psy14060        188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVE  224 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~  224 (283)
                      ...|.|.++..+|.|.|+|.|.|..|...+. +.|.|.
T Consensus       162 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            2579999999999999999999999886543 555554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.82  E-value=6.5e-20  Score=147.47  Aligned_cols=187  Identities=10%  Similarity=0.021  Sum_probs=110.7

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEccCcc-----ce-EEeec--------
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKGDKE-----IV-RKITA--------   84 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~-----i~-~~~~~--------   84 (283)
                      -+.|.|+   |.......+.+...      +.+...+. ..+.+|++++|.|.+.|.+.     .. .|...        
T Consensus        18 ~Y~C~a~---g~~~~~~~~~~~~~------~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~   88 (254)
T 2c1o_A           18 KLSCKAS---GYSFTNYWMNWLRE------LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR   88 (254)
T ss_dssp             -----------------------C------CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred             EEEEcCc---hhhhhhhhhheeec------eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence            4667777   44444433333332      22222121 24667889999999998762     22 33321        


Q ss_pred             ------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee----e-eeeccCCCCCCeEEecCCceeecC
Q psy14060         85 ------------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL----S-DLSEQKPAKPPVFTKKIQPCRAFE  147 (283)
Q Consensus        85 ------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~----~-~~~~~~~~~~p~~~~~~~~~~~~~  147 (283)
                                  ..++.+...+....|.|.+++.+|+|.|+|.+.|..+.    . .+.......+|.+...........
T Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~  168 (254)
T 2c1o_A           89 LIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLT  168 (254)
T ss_dssp             EEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHH
T ss_pred             EEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhcc
Confidence                        24666666667889999999999999999999887542    1 122222233676665444444446


Q ss_pred             CCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        148 QDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       148 g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      |+.+.|.|.+.|. |. +.++|+|++..+....  ........     ..+.|.|.++..+|.|.|+|.|.|.....
T Consensus       169 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            7899999999885 44 4699999998876540  00000000     13579999999999999999999987553

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.82  E-value=1.3e-20  Score=147.10  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             eeeecCcEEEEEEEccCccc----e-EEeec---------------------------CCCEEEEE---cCCEEEEEEcc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI----V-RKITA---------------------------TETTEMEH---KGKIQERVVDA  103 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i----~-~~~~~---------------------------~~~~~~~~---~~~~~~L~i~~  103 (283)
                      .+.+|+.+.|.|.+.+.+..    . .|...                           ..++.+..   .....+|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~   90 (214)
T 3jz7_A           11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTN   90 (214)
T ss_dssp             EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECS
T ss_pred             EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEcc
Confidence            36778899999999987621    2 33221                           22222211   11356799999


Q ss_pred             CCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCE--ecCCCCC
Q psy14060        104 SELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDF--PITSSPD  179 (283)
Q Consensus       104 ~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~--~~~~~~~  179 (283)
                      ++.+|+|.|+|.+.|..+. .....+.+..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++.  .+.....
T Consensus        91 v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~  170 (214)
T 3jz7_A           91 LQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL  170 (214)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG
T ss_pred             CChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce
Confidence            9999999999999998773 33344555556655444444457889999999999 888999999999543  3321111


Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       180 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      .    ......|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       171 ~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          171 A----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             G----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             e----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            0    0122379999999999999999999999999888888776

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.82  E-value=1.3e-18  Score=152.56  Aligned_cols=210  Identities=10%  Similarity=0.097  Sum_probs=127.0

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|+.++|.|.+.+.+    .+ .|..                         ...|+.+...  +....|.|.+++.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (475)
T 1iga_A           12 VKKPGASVKVSCKASGYSFTSYGL-HWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (475)
T ss_pred             EEeCCCCEEEEEEecCCCCCCceE-EEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChh
Confidence            367788999999998753    22 2221                         1234444332  34678999999999


Q ss_pred             CCeEEEEEEEecce-------eeeeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeee-cC-C-EEEEEeCCEe
Q psy14060        108 DDGYYAITERKYYA-------LSDLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-P-TIKWFREDFP  173 (283)
Q Consensus       108 D~G~Y~C~a~n~~~-------~~~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~-~~~W~k~~~~  173 (283)
                      |+|.|.|.+.+..+       ......+.+.    .+|.+.... ...+..|+.+.|.|.+.|. |. + .+.|++++..
T Consensus        91 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~  169 (475)
T 1iga_A           91 DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQG  169 (475)
T ss_pred             hCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcc
Confidence            99999999988753       1111222222    245444332 2233689999999999987 65 5 9999998753


Q ss_pred             cCCCCCeEEE--EeCC---EEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEEEEEeccCC-------C-CCCCCCCeE
Q psy14060        174 ITSSPDFQIH--TFST---KSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQG-------G-RGGVVPPSF  239 (283)
Q Consensus       174 ~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~-------~-~~~~~~p~~  239 (283)
                      ..........  ..+.   .+.|.|..+...|.|.|+|.+.|..+.. ...+.+.|......       . .....+|.+
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v  249 (475)
T 1iga_A          170 VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRL  249 (475)
T ss_pred             cceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEE
Confidence            2110000000  1111   2358888888899999999999988642 22223222110000       0 000024444


Q ss_pred             -EecCCceEEcCCCeEEEEEEEEeeCC---CeeEE
Q psy14060        240 -LTTISSAVINVGQLARFDAKISATKP---LDVYW  270 (283)
Q Consensus       240 -~~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W  270 (283)
                       ...+....+.+|+.+.|.|.+.|.++   +.|.|
T Consensus       250 ~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             EEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence             33333344689999999999998754   58999

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=4.2e-19  Score=141.78  Aligned_cols=173  Identities=10%  Similarity=0.017  Sum_probs=117.8

Q ss_pred             CCCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEEE-----EcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         47 VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME-----HKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        47 ~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .++|.+...+...+.+|+.|+|.|.+.+.+....+...+......     .......|.|.+++.+|+|.|+|.+.|..+
T Consensus         5 ~~kP~i~~~P~~~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   84 (242)
T 1p6f_A            5 LPKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   84 (242)
T ss_dssp             CCCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCCCEEEeeCCCccCCCCcEEEEEeeCCCCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCc
Confidence            346777766655688899999999997655322333322221111     123567899999999999999999987644


Q ss_pred             e---eeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC
Q psy14060        122 L---SDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       122 ~---~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~  195 (283)
                      .   +....+.+   ..+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+..    ..........|.|.+
T Consensus        85 ~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~  158 (242)
T 1p6f_A           85 WSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGP  158 (242)
T ss_dssp             ECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTT-SCSEEEEEECSSSCEE----EEEECSSEEEEEEEE
T ss_pred             cccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCC-CCCEEEEEECCCccCc----cccCCCceEEEEeCC
Confidence            2   12222222   2356666544 356889999999999876 4569999999876542    122334567899999


Q ss_pred             CCCCCCEEEEEEEEeCC--c-eeEEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAENRG--G-KAKCSANLVVEE  225 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~--g-~~~~~~~l~v~~  225 (283)
                      ++.+|+|.|+|.+.|..  . ..+..+.|.|.+
T Consensus       159 v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          159 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             CCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            99999999999999864  1 233446777775

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.82  E-value=9.9e-19  Score=140.89  Aligned_cols=166  Identities=12%  Similarity=0.098  Sum_probs=118.2

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.|.+    .+. |..                         ...++.+...  +...+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~g~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (256)
T 1nqb_A           11 LVKPGASVKLSCKASGYTFTSYWMH-WVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSE   89 (256)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSCEE-EEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCcEEEEEEeccccCCCceEE-EEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChh
Confidence            366788999999998864    232 211                         1245655542  45789999999999


Q ss_pred             CCeEEEEEEEeccee------eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC-----EEEEEe--CCEec
Q psy14060        108 DDGYYAITERKYYAL------SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-----TIKWFR--EDFPI  174 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-----~~~W~k--~~~~~  174 (283)
                      |+|.|+|.+.|..+.      .....+.+..+|.+...+....+.+|++++|.|.+.+.|.+     .+.|+|  ++..+
T Consensus        90 DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~  169 (256)
T 1nqb_A           90 DSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSP  169 (256)
T ss_dssp             GCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCE
T ss_pred             hCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCc
Confidence            999999999987441      12233445556667667777889999999999999987765     899999  55432


Q ss_pred             C------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEEEEEe
Q psy14060        175 T------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVVEE  225 (283)
Q Consensus       175 ~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  225 (283)
                      .            ...++.........+|.|.++..+|+|.|+|.+.|..... .....|.|..
T Consensus       170 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          170 KLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            1            1245665555667789999999999999999998854322 1224555553

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=5.8e-19  Score=142.32  Aligned_cols=153  Identities=12%  Similarity=0.077  Sum_probs=108.9

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee------------------------cCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT------------------------ATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~------------------------~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.|+|.|.+.|.|    .+. |..                        ...++.+...  +...+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~g~p~~~~~v~-W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           11 LVRPSETLSLTCTVSGFSLTSFSVS-WVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             EECTTSEEEEEEEEESSCTTTSCCE-EEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             cccCCceEEEEEEEecccCCCccEE-EEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            477788999999999873    332 211                        1345665542  567899999999999


Q ss_pred             CeEEEEEEEecce----------eeeeeccCCCCC---------------CeEEecCCceeecCCCcEEEEEEEeeecCC
Q psy14060        109 DGYYAITERKYYA----------LSDLSEQKPAKP---------------PVFTKKIQPCRAFEQDQARFEVEFDGDPLP  163 (283)
Q Consensus       109 ~G~Y~C~a~n~~~----------~~~~~~~~~~~~---------------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  163 (283)
                      +|.|.|.+.|..+          ......+.+..+               +.+...+....+.+|++++|.|.+.+.|.+
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  169 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN  169 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence            9999999998732          111112222222               223344556678899999999999998888


Q ss_pred             EEEEEe--CCEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        164 TIKWFR--EDFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       164 ~~~W~k--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+.|+|  ++..+.            ...++.+........|.|.++..+|+|.|+|.+.|..
T Consensus       170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            999999  554321            1245655555566789999999999999999999975

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.81  E-value=7.9e-20  Score=138.80  Aligned_cols=164  Identities=9%  Similarity=0.014  Sum_probs=113.9

Q ss_pred             CCCceeeecCC-eeeecCcEEEEEEEccCcc-c-eEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee
Q psy14060         48 PEPSASGVHGK-EIHTAKSQQVQKEKKGDKE-I-VRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD  124 (283)
Q Consensus        48 ~~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~-i-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~  124 (283)
                      ++|.+...+.. .+.+|+.+.|.|.+.+.+. . ..|...+...    ......|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~-   77 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----EETNSSLNIVNAKFEDSGEYKCQHQQVNESE-   77 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEEC----SCCSSEEEECSCCGGGCEEEEEECTTSSCCC-
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeEC----CCCceEEEEeccceecCEEEEEEcCCccccc-
Confidence            35555554444 5888999999999998874 2 2454433221    1235689999999999999999998865432 


Q ss_pred             eeccCCCCCCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ...+.+..++... ......+..|+.+.|.|.+. +.|.+.+.|++++..+....        ....|.|.++..+|+|.
T Consensus        78 ~~~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~  148 (176)
T 1f2q_A           78 PVYLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGT  148 (176)
T ss_dssp             CEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEE
T ss_pred             cEEEEEeCcceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEE
Confidence            2223333344333 33446788999999999995 55667999999999875321        23469999999999999


Q ss_pred             EEEEEEeCCce-eEEEEEEEEEe
Q psy14060        204 FAVIAENRGGK-AKCSANLVVEE  225 (283)
Q Consensus       204 Y~C~a~n~~g~-~~~~~~l~v~~  225 (283)
                      |+|.+.|..+. .+..+.|.|..
T Consensus       149 Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          149 YYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEeCCcceEecCEEEEEec
Confidence            99999997554 33446777774

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.81  E-value=1.2e-19  Score=141.97  Aligned_cols=158  Identities=10%  Similarity=0.077  Sum_probs=110.5

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.+.|.|.+.|.|... .|...                    ..++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (213)
T 3d9a_L           12 SVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQS   91 (213)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeee
Confidence            366788999999999987222 33211                    146666666678899999999999999999999


Q ss_pred             ecceee-----eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCe--EEEEeC--
Q psy14060        118 KYYALS-----DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDF--QIHTFS--  186 (283)
Q Consensus       118 n~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~--~~~~~~--  186 (283)
                      |..+..     .+.......+|.+...........|+.+.|.|.+.| .|.+ .+.|++++..+......  ......  
T Consensus        92 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  171 (213)
T 3d9a_L           92 NSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS  171 (213)
T ss_dssp             SSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTC
T ss_pred             cCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCC
Confidence            886521     122222223676665444444457889999999988 5555 89999999987654110  000000  


Q ss_pred             ---CEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        187 ---TKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       187 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                         ..+.|.|.++..+|.|.|+|.|.|......
T Consensus       172 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          172 TYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             CEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             CEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence               124799999999999999999999876543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.81  E-value=2.2e-19  Score=141.82  Aligned_cols=165  Identities=7%  Similarity=0.004  Sum_probs=104.2

Q ss_pred             eeecCcEEEEEEEccCccc---e-EEeecCC-----------------------CEEEEE---cCCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDKEI---V-RKITATE-----------------------TTEMEH---KGKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i---~-~~~~~~~-----------------------~~~~~~---~~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++++|.|.+.+.+..   . .|...+.                       +.....   ..+..+|.|.+++.+|+
T Consensus        16 v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   95 (226)
T 4f80_A           16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS   95 (226)
T ss_dssp             EETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHC
Confidence            5678999999999876521   1 3433221                       122111   12467899999999999


Q ss_pred             eEEEEEEEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEe--C
Q psy14060        110 GYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTF--S  186 (283)
Q Consensus       110 G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~--~  186 (283)
                      |.|+|.+.|..+..... +.+..++.+........+..|+.+.|.|.+.| .|.|.++|++++..+.......+...  +
T Consensus        96 G~Y~C~a~n~~~~~~~~-v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g  174 (226)
T 4f80_A           96 GKYLCYFQDGDFYEKAL-VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG  174 (226)
T ss_dssp             EEEEEEEEETTEEEEEE-EEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTS
T ss_pred             eeEEEEEECCCcEEEEE-EEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCC
Confidence            99999999987743321 22211222222233456778999999999988 48999999997654433221111111  2


Q ss_pred             CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       187 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      ....+.+..+..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus       175 ~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             cEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            223344445678999999999999999988888887753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.81  E-value=1.8e-20  Score=145.83  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecC------------------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITAT------------------ETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+.+|+.+.|.|.+.|.|... .|....                  .++...   . ..|.|.+++.+|+|.|+|.+.|.
T Consensus        15 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~-~~L~i~~~~~~d~G~Y~C~~~~~   90 (209)
T 1nbq_A           15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL---P-TGITFKSVTREDTGTYTCMVSEE   90 (209)
T ss_dssp             CEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE---T-TEEECSCCCTTSCSEEEEEEEET
T ss_pred             EEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee---c-cEEEEeeCCHHHCcEEEEEEecC
Confidence            367788999999999877322 332221                  233322   1 67999999999999999999987


Q ss_pred             ce---eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCe-------EEEEeCCE
Q psy14060        120 YA---LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDF-------QIHTFSTK  188 (283)
Q Consensus       120 ~~---~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~-------~~~~~~~~  188 (283)
                      .+   ......+.+..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+......       ........
T Consensus        91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
T 1nbq_A           91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT  170 (209)
T ss_dssp             TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTT
T ss_pred             CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCc
Confidence            54   233445555566666555555678899999999997 88999999999999887653221       01111233


Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      ..|.|.++..+|.|.|+|.|.|..|....+
T Consensus       171 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          171 GELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             CCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             ceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            469999999999999999999999987443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.81  E-value=3.2e-19  Score=140.27  Aligned_cols=166  Identities=10%  Similarity=0.040  Sum_probs=106.5

Q ss_pred             eeecCcEEEEEEEccCccc-----e-EEeec---------------------CCCEEEEE---cCCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDKEI-----V-RKITA---------------------TETTEMEH---KGKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i-----~-~~~~~---------------------~~~~~~~~---~~~~~~L~i~~~~~~D~  109 (283)
                      +.+|+++.|.|.+.|.|..     . .|...                     ..+..+..   ..+..+|.|.+++.+|+
T Consensus        13 ~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   92 (222)
T 3sbw_C           13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDA   92 (222)
T ss_dssp             EETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccC
Confidence            6678899999999876621     1 44332                     13333321   12467899999999999


Q ss_pred             eEEEEEEEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC-CEecCCCCCeEE--EEeC
Q psy14060        110 GYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQI--HTFS  186 (283)
Q Consensus       110 G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~-~~~~~~~~~~~~--~~~~  186 (283)
                      |.|+|.+.|.........+.+..++..........+..|+.+.|.|.+.|.|.|.+.|+++ +..+........  ...+
T Consensus        93 G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~  172 (222)
T 3sbw_C           93 GVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK  172 (222)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----
T ss_pred             eEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCC
Confidence            9999999983323333333333333222111112567899999999999999999999998 555443221111  1111


Q ss_pred             CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       187 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      ......+..+..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus       173 ~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          173 LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            111222223456899999999999999998888888764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.81  E-value=1.9e-19  Score=142.20  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=117.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecC------CCEE-EEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITAT------ETTE-MEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQK  129 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~------~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~  129 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+      .++. .........|.|.+++.+|+|.|+|.+.|..+.. ....+.
T Consensus        30 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~  109 (231)
T 3ojm_B           30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD  109 (231)
T ss_dssp             EEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEE
Confidence            377789999999999887332 333221      1110 0111233479999999999999999999987732 222222


Q ss_pred             C----CCCCeEEe-cCCceeecCCCcEEEEEEEeeecCCEEEEEe----CCEecCCCCC--eEEEEeC-----CEEEEEE
Q psy14060        130 P----AKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLPTIKWFR----EDFPITSSPD--FQIHTFS-----TKSILIM  193 (283)
Q Consensus       130 ~----~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k----~~~~~~~~~~--~~~~~~~-----~~~~l~i  193 (283)
                      +    ..+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....  .......     ....|.|
T Consensus       110 V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  189 (231)
T 3ojm_B          110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL  189 (231)
T ss_dssp             EECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEE
T ss_pred             EEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEE
Confidence            2    12333332 2456788899999999999999999999999    7776654322  2222111     1246999


Q ss_pred             cCCCCCCCEEEEEEEEeCCceeEEEEEEEEEec
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK  226 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  226 (283)
                      .++..+|.|.|+|.|.|..|.....+.|.|...
T Consensus       190 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPK  222 (231)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ecCCHHHCeEEEEEEEeccceEeeEEEEEEecC
Confidence            999999999999999999999988899998863

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=3.5e-19  Score=136.10  Aligned_cols=149  Identities=11%  Similarity=0.080  Sum_probs=110.4

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecCCC--------------------EEEEE---cCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITATET--------------------TEMEH---KGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~~--------------------~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|+.+.|.|.+.+.+... .|......                    +....   ..+...|.|.+++.+|+|.|+|.
T Consensus         7 ~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   86 (184)
T 2ny1_B            7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   86 (184)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEE
Confidence            66788999999998877322 44433221                    22111   22356699999999999999999


Q ss_pred             EEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC
Q psy14060        116 ERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       116 a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~  195 (283)
                      +.|..+...+.   +.   .+. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+..          ....|.|.+
T Consensus        87 ~~~~~~~~~l~---V~---~~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----------~~~~L~i~~  149 (184)
T 2ny1_B           87 VEDQKEEVQLL---VF---GLT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQ  149 (184)
T ss_dssp             ETTEEEEEEEE---EE---EEE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE----------ESSEEEESS
T ss_pred             EEcCCCcEEEE---EE---Eec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc----------CceEEEEec
Confidence            98886633222   11   111 23445788999999999998889999999998765411          223699999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +..+|+|.|+|.|.|..+.....+.|.|..
T Consensus       150 v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          150 LELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence            999999999999999999998889998886

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=6.4e-19  Score=141.85  Aligned_cols=212  Identities=10%  Similarity=0.001  Sum_probs=111.3

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEE-EE------EcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTE-ME------HKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~-~~------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ++|.+...+...+.+|+.|+|.|.+.+......|...+.... ..      .......|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~   85 (257)
T 1b6u_A            6 RKPSLLAHPGPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTH   85 (257)
T ss_dssp             CCCEECCBSCSEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSS
T ss_pred             CCCEEEEcCCCEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccC
Confidence            355555555556888999999999976542223433332211 00      11246789999999999999999997642


Q ss_pred             e------eeeeeccC---CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEE-EeCCEEE
Q psy14060        121 A------LSDLSEQK---PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-TFSTKSI  190 (283)
Q Consensus       121 ~------~~~~~~~~---~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~-~~~~~~~  190 (283)
                      .      .+....+.   ...+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|++..+......... .......
T Consensus        86 ~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  163 (257)
T 1b6u_A           86 SPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQAD  163 (257)
T ss_dssp             CTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEE
T ss_pred             CCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEE
Confidence            1      11111222   234566655544 467899999999999874 5799999998765432111000 0112467


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCCc-----eeEEEEEEEEEeccCCCCCCCCCCeEEec-CCceEEcCCCeEEEEEEEEeeC
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISATK  264 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p  264 (283)
                      |.|.+++  |+|.|+|.+.+...     ..+..+.|.|..          +|.+..+ +.......|..+.|.|.+ |.+
T Consensus       164 l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g----------~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~  230 (257)
T 1b6u_A          164 FPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG----------NPSNSWPSPTEPSSETGNPRHLHAAA-EQK  230 (257)
T ss_dssp             EEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC----------CC----------------------------
T ss_pred             EEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec----------cCCCCCCCCcccCccCCCeEEEEEEE-cch
Confidence            9999998  99999999997532     122335666664          3444321 112245679999999855 446


Q ss_pred             CCeeEEeeCC
Q psy14060        265 PLDVYWLKVS  274 (283)
Q Consensus       265 ~~~v~W~~~g  274 (283)
                      ...+.|...+
T Consensus       231 ~~~~~~~~~~  240 (257)
T 1b6u_A          231 LISEEDLNLD  240 (257)
T ss_dssp             ----------
T ss_pred             HHHHHHhhhh
Confidence            6778887643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.80  E-value=3e-18  Score=141.21  Aligned_cols=144  Identities=24%  Similarity=0.353  Sum_probs=116.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+|.|...+....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. .+..+.|.|.++..+|+|.|+|.+.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            4788988889999999999999999999999999999999988753 3555543 3456689999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |..|.....+.|.|......     ..|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus        83 n~~g~~~~~~~l~V~~~p~~-----~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~  148 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKI-----HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN  148 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEE-----CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS
T ss_pred             cCCCCccceEEEEEecCCcc-----CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC
Confidence            99998888888888642100     1122222235677889999999999999999999999999877643

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.80  E-value=2.2e-19  Score=140.16  Aligned_cols=157  Identities=11%  Similarity=0.085  Sum_probs=107.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.++|.|.+.|.+... .|..                    ...++.+...+....|.|.+++.+|+|.|.|.+.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   90 (210)
T 1lk3_L           11 TVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (210)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEE
Confidence            366788999999999886222 3322                    1246666656677899999999999999999999


Q ss_pred             ecceee--e--eeccC-CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCC-CC-eEEEEeC--
Q psy14060        118 KYYALS--D--LSEQK-PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSS-PD-FQIHTFS--  186 (283)
Q Consensus       118 n~~~~~--~--~~~~~-~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~-~~-~~~~~~~--  186 (283)
                      |..+..  .  ...+. ...+|.+........+..|+.+.|.|.+.|. |.+ .+.|+|++..+... .. .......  
T Consensus        91 ~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  170 (210)
T 1lk3_L           91 WNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDS  170 (210)
T ss_dssp             SSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTC
T ss_pred             cCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCC
Confidence            876421  1  11222 2235666654444445579999999999874 444 89999999987654 10 0000001  


Q ss_pred             ---CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        187 ---TKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       187 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                         ..+.|.|..+..+|.|.|+|.|.|.....
T Consensus       171 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          171 TYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence               12369999999999999999999986543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=144.93  Aligned_cols=194  Identities=10%  Similarity=0.025  Sum_probs=118.0

Q ss_pred             ceEEEEEcCCee-----eeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccc--e-EEeecCCCEE--
Q psy14060         20 LKSRTASSDRSG-----VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEI--V-RKITATETTE--   89 (283)
Q Consensus        20 ~~~~~a~n~~g~-----~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i--~-~~~~~~~~~~--   89 (283)
                      .+.|.|.|..|.     .+....|.|...+.   .|.+. .....+.+|+.+.|.|.+.|.|..  . .|...+....  
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~---~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~  163 (327)
T 2wng_A           88 TYYCVKFRKGSPDTEFKSGAGTELSVRAKPS---APVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF  163 (327)
T ss_dssp             EEEEEEEESSTTCEEEEECCCEEEEEEBCCC---CCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred             EEEEEeecCCCcceeEeecCcEEEEEEecCC---Cceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc
Confidence            467899998664     12446777776543   22222 122347778899999999987621  2 3433221111  


Q ss_pred             ---EEE--c-C---CEEEEEEccCCCCCCeEEEEEEEeccee------eeeeccCCCCCCeEEecCCceeecCCCcEEEE
Q psy14060         90 ---MEH--K-G---KIQERVVDASELDDDGYYAITERKYYAL------SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFE  154 (283)
Q Consensus        90 ---~~~--~-~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~  154 (283)
                         ...  . +   ....|.|.....+|.|.|+|.+.|..+.      .....+.+..+|.+...+..  +..|+.+.|.
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~  241 (327)
T 2wng_A          164 QTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVT  241 (327)
T ss_dssp             EEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEE
T ss_pred             ccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEE
Confidence               100  1 1   1235777777777789999999997653      12223455667877655443  7789999999


Q ss_pred             EEEeeecC-C-EEEEEeCCEecCCCCCeEEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        155 VEFDGDPL-P-TIKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       155 C~~~g~p~-~-~~~W~k~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      |.+.|.++ + .+.|+++|..+.......+.....     ...|.|..+..+|.|.|+|.|.|..+......
T Consensus       242 C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~  313 (327)
T 2wng_A          242 CQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKS  313 (327)
T ss_dssp             EEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEE
T ss_pred             EEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhh
Confidence            99999644 4 799999999875321111111111     14588999999999999999999988754443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.80  E-value=6.6e-19  Score=146.18  Aligned_cols=188  Identities=10%  Similarity=-0.010  Sum_probs=118.0

Q ss_pred             ceEEEEEcCC-----eeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCE------
Q psy14060         20 LKSRTASSDR-----SGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETT------   88 (283)
Q Consensus        20 ~~~~~a~n~~-----g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~------   88 (283)
                      .+.|.|.|..     +..+....|.|....   ..|.+.......+.+|+.++|.|.+.+.+....+...+...      
T Consensus        88 ~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~---~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~  164 (316)
T 3vh8_G           88 NYTCRGSHPHSPTGWSAPSNPVVIMVTGNH---RKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLV  164 (316)
T ss_dssp             EEEEEEBCSSSSSSBCCCCCCEEEEEECSS---CCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEE
T ss_pred             EEEEEEEcCCCCcceecCCCcEEEEEecCC---CCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceee
Confidence            4678888643     234566777776642   34566655555577899999999997655322232222111      


Q ss_pred             -EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee------eeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEe
Q psy14060         89 -EMEHKGKIQERVVDASELDDDGYYAITERKYYAL------SDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFD  158 (283)
Q Consensus        89 -~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~------~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~  158 (283)
                       ..........|.|.+++.+|+|.|+|.+.|..+.      +....+.+   ..+|.+...+. ..+..|+.++|.|.+.
T Consensus       165 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~  243 (316)
T 3vh8_G          165 GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR  243 (316)
T ss_dssp             CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES
T ss_pred             eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC
Confidence             1111124578999999999999999999998662      22222222   34566655543 3678899999999997


Q ss_pred             eecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        159 GDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       159 g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      . |.+.+.|+|++..+........... .....|.|.++.  |+|.|+|.+.|..+.
T Consensus       244 ~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          244 S-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             S-CCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             C-CCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            5 7889999999876642111000001 123579999998  999999999997654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=133.04  Aligned_cols=135  Identities=15%  Similarity=0.305  Sum_probs=102.2

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..   ...|.|.++..+|+|.|+|.+.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec---CCCEEEeeCCHhHCcEEEEEEEE
Confidence            67788888899999999999999999989999999999887753  23333322   23599999999999999999999


Q ss_pred             CCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCC--ceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        211 RGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       211 ~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ..+...  ....+.+..          +|.+.....  ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus        79 ~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~  142 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNV----------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  142 (189)
T ss_dssp             TTTTEEEEEEEEEEEEE----------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS
T ss_pred             cCCCceEEEEEEEEecC----------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC
Confidence            875433  334555553          455554433  346788999999999999999999999999988654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.80  E-value=9.2e-19  Score=137.31  Aligned_cols=159  Identities=13%  Similarity=0.141  Sum_probs=106.7

Q ss_pred             eeeecCcEEEEEEEccC-c--cceEEee------------------------cCCCEEEEEcCCEEEEEEccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGD-K--EIVRKIT------------------------ATETTEMEHKGKIQERVVDASELDDDGY  111 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~-~--~i~~~~~------------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+.+|+.++|.|.+.+. +  .+ .|..                        ...++.+...+...+|.|.+++.+|+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~v-~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (218)
T 3s96_B           11 SFSLGASAKLTCTLNSQHSTYTI-EWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAI   89 (218)
T ss_dssp             EEETTSCEEEEEEECGGGTTCCE-EEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EECCCCcEEEEEECCCCCCCcEE-EEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEE
Confidence            36678899999999988 5  33 2222                        1135665556678899999999999999


Q ss_pred             EEEEEEecce------eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCC
Q psy14060        112 YAITERKYYA------LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPD  179 (283)
Q Consensus       112 Y~C~a~n~~~------~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~  179 (283)
                      |.|.+.|..+      ......+.+    ..+|.+...........|+.+.|.|.+.+ .|.+ .+.|++++..+.....
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~  169 (218)
T 3s96_B           90 YICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVD  169 (218)
T ss_dssp             EEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-----
T ss_pred             EEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCcee
Confidence            9999988763      111112222    25666665555555566789999999998 4666 8999999998865211


Q ss_pred             e-E-EEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        180 F-Q-IHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       180 ~-~-~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      . . ....+.   .+.|.|.....+|.|.|+|.|.|..+.....
T Consensus       170 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          170 TSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             ---------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             cCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            1 1 111111   1347788888888999999999998765543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.1e-18  Score=135.55  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=112.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ..+.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++..+|+|.|+|.+.|.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence            46778888888999999999999999998999999999999886542         246999999999999999999998


Q ss_pred             Ccee-EEEEEEEEEeccCC-----CCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        212 GGKA-KCSANLVVEEKRQG-----GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       212 ~g~~-~~~~~l~v~~~~~~-----~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      .+.. ...+.|.|......     ......+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+...
T Consensus        88 ~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~  162 (218)
T 3k0w_A           88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE  162 (218)
T ss_dssp             TCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC
T ss_pred             CCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC
Confidence            7754 44467777653110     000112367777788889999999999999999999999999999988654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=2e-18  Score=119.93  Aligned_cols=94  Identities=23%  Similarity=0.423  Sum_probs=87.8

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .||.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+...+..++|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            47889999999999999999999999999999999999999999888888888888889999999999999999999999


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                      .|.....+.|.|..
T Consensus        92 ~G~~~~~~~l~V~~  105 (107)
T 3knb_B           92 AGEAYAAAAVTVLE  105 (107)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEc
Confidence            99999999999875

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.79  E-value=4.2e-19  Score=138.64  Aligned_cols=160  Identities=9%  Similarity=0.078  Sum_probs=111.1

Q ss_pred             eeeecCcEEEEEEEccCccceEEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .+.+|+.++|.|.+...+.+ .|..                    ...++.+.......+|.|.+++.+|+|.|+|.+.|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~v-~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   89 (211)
T 3tv3_L           11 SGSPGQSITISCTGTSNNFV-SWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLV   89 (211)
T ss_dssp             EECTTCEEEEEEECCCSSCE-EEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCEEEEEEECCCCeE-EEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEec
Confidence            36678899999999822233 2222                    23466666666788999999999999999999998


Q ss_pred             cce---eeeeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCCEecCCCCCe--EEEEeCC
Q psy14060        119 YYA---LSDLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFREDFPITSSPDF--QIHTFST  187 (283)
Q Consensus       119 ~~~---~~~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~~~~~~~~~--~~~~~~~  187 (283)
                      ..+   ......+.+.    .+|.+...+....+..|+.+.|.|.+.|.+  .+.+.|++++..+......  .......
T Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~  169 (211)
T 3tv3_L           90 GNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNN  169 (211)
T ss_dssp             TTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTS
T ss_pred             CCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCC
Confidence            765   1222222222    577777666555555799999999999863  4789999999987542110  0001111


Q ss_pred             ----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        188 ----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       188 ----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                          ...|.|..+..+|.|.|+|.+.|..+.....+
T Consensus       170 ~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          170 KYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             SEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence                24688988888899999999999986655443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.79  E-value=1.2e-17  Score=147.72  Aligned_cols=218  Identities=11%  Similarity=0.064  Sum_probs=129.9

Q ss_pred             eeeecCcEEEEEEEccCc------cceEEee------------------------cCCCEEEEEc--CCEEEEEEccCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK------EIVRKIT------------------------ATETTEMEHK--GKIQERVVDASEL  106 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~------~i~~~~~------------------------~~~~~~~~~~--~~~~~L~i~~~~~  106 (283)
                      .+.+|+.++|.|.+.+.+      .+ .|..                        ...|+.+..+  .+..+|.|.+++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v-~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   89 (512)
T 1zvo_C           11 LVKPSETLSLTCIVSGGPIRRTGYYW-GWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSA   89 (512)
T ss_pred             EEcCCCCEEEEEEEcccccCCCCeeE-EEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCH
Confidence            366788999999998643      12 1211                        1235554432  3468999999999


Q ss_pred             CCCeEEEEEEEecce--------------eeeeeccCCC----CCCeEEe-cCCceeecCCCcEEEEEEEeee-cCC-EE
Q psy14060        107 DDDGYYAITERKYYA--------------LSDLSEQKPA----KPPVFTK-KIQPCRAFEQDQARFEVEFDGD-PLP-TI  165 (283)
Q Consensus       107 ~D~G~Y~C~a~n~~~--------------~~~~~~~~~~----~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~~  165 (283)
                      +|+|.|.|.+.+..+              ......+.+.    .+|.+.. .+.......++.+.|.|.+.|. |.+ .+
T Consensus        90 ~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v  169 (512)
T 1zvo_C           90 ADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTV  169 (512)
T ss_pred             HHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEE
Confidence            999999999877531              1111222222    2454432 2111102246899999999986 665 89


Q ss_pred             EEEeCCEecCCCCCeEEEE-eCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE-----------EEEEEeccC--
Q psy14060        166 KWFREDFPITSSPDFQIHT-FST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSA-----------NLVVEEKRQ--  228 (283)
Q Consensus       166 ~W~k~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-----------~l~v~~~~~--  228 (283)
                      +|++++............. .+.   .+.|.|...... .|.|+|.+.|..+......           .+.+.....  
T Consensus       170 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~  248 (512)
T 1zvo_C          170 TWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAE  248 (512)
T ss_pred             EEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchh
Confidence            9999754321000000111 111   235888877776 8999999999987655443           223321000  


Q ss_pred             --C--------------------------------------CCCCCCCCeE-EecCCceEEcCCCeEEEEEEEEeeCCC-
Q psy14060        229 --G--------------------------------------GRGGVVPPSF-LTTISSAVINVGQLARFDAKISATKPL-  266 (283)
Q Consensus       229 --~--------------------------------------~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~-  266 (283)
                        .                                      ......+|.+ +..+....+.+|+.+.|.|.+.|.+++ 
T Consensus       249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~  328 (512)
T 1zvo_C          249 GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKD  328 (512)
T ss_pred             ccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCC
Confidence              0                                      0001124444 333444457789999999999986333 


Q ss_pred             -eeEEeeCCEEec
Q psy14060        267 -DVYWLKVSSLSD  278 (283)
Q Consensus       267 -~v~W~~~g~~l~  278 (283)
                       .|+|++||+.+.
T Consensus       329 ~~i~W~k~g~~~~  341 (512)
T 1zvo_C          329 AHLTWEVAGKVPT  341 (512)
T ss_pred             eEEEEEECCEecc
Confidence             899999998865

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.79  E-value=5.4e-18  Score=136.47  Aligned_cols=167  Identities=10%  Similarity=0.075  Sum_probs=115.9

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++|+|.|.+.|.+    .+.          ..+              ....++.+...  .....|.|.+++.+|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   92 (256)
T 3umt_A           13 LVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSED   92 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCccc
Confidence            366788999999998854    221          111              01245555432  457789999999999


Q ss_pred             CeEEEEEEEec----ce-eeeeeccCCC----------------CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEE
Q psy14060        109 DGYYAITERKY----YA-LSDLSEQKPA----------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKW  167 (283)
Q Consensus       109 ~G~Y~C~a~n~----~~-~~~~~~~~~~----------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W  167 (283)
                      +|.|.|.+.|.    .. ......+.+.                .+|.+...+....+.+|++++|.|.+.+.|.+.+.|
T Consensus        93 sG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W  172 (256)
T 3umt_A           93 SAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNW  172 (256)
T ss_dssp             CEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEE
T ss_pred             CEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEE
Confidence            99999999887    11 1111222222                266777777778899999999999999988889999


Q ss_pred             EeC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEe
Q psy14060        168 FRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEE  225 (283)
Q Consensus       168 ~k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  225 (283)
                      ||+  +..+.            ...++.....+...+|.|.++..+|+|.|+|.+.|...... .-..|.|..
T Consensus       173 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          173 LQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             EEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            984  22111            12456666666777899999999999999999988654322 235566654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.79  E-value=1.9e-18  Score=135.02  Aligned_cols=157  Identities=11%  Similarity=0.101  Sum_probs=107.9

Q ss_pred             eeeecCcEEEEEEEccCcc---ce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKE---IV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~---i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|+.++|.|.+.|.+.   .. .|..                    ...++.....+....|.|.+++.+|+|.|.|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (212)
T 1q0x_L           11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFC   90 (212)
T ss_dssp             EECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEE
Confidence            3667889999999988651   22 2321                    1245665555677899999999999999999


Q ss_pred             EEEeccee--ee--eeccC--CCCCCeEEecCCceeecCCCcEEEEEEEeeecC-C-EEEEEeCCEecCCCCCe-EEEEe
Q psy14060        115 TERKYYAL--SD--LSEQK--PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-P-TIKWFREDFPITSSPDF-QIHTF  185 (283)
Q Consensus       115 ~a~n~~~~--~~--~~~~~--~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~-~~~W~k~~~~~~~~~~~-~~~~~  185 (283)
                      .+.|..+.  ..  ...+.  ...+|.+...........|+.+.|.|.+.+.++ + .+.|+|++..+...... .....
T Consensus        91 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  170 (212)
T 1q0x_L           91 ALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQ  170 (212)
T ss_dssp             EEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeC
Confidence            99987642  11  11221  124677665544444557889999999998644 3 89999999987653110 01111


Q ss_pred             C-----CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        186 S-----TKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       186 ~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      .     ..+.|.|.....+|.|.|+|.|.|.....
T Consensus       171 ~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (212)
T 1q0x_L          171 SNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS  205 (212)
T ss_dssp             TTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             CCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcce
Confidence            1     12468898888899999999999987553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=1.3e-19  Score=139.02  Aligned_cols=142  Identities=13%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             eeecCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEcc-CCCCCCeEEEEEEEeccee-eeeeccCC--CCCCe
Q psy14060         60 IHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDA-SELDDDGYYAITERKYYAL-SDLSEQKP--AKPPV  135 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~D~G~Y~C~a~n~~~~-~~~~~~~~--~~~p~  135 (283)
                      ...|+.+.|.|.+.|.+.+ .|...+......   ....|.|.+ ++.+|+|.|+|.|.|..+. .....+.+  ..++.
T Consensus        11 ~~~G~~v~L~C~~~~~~~i-~W~k~g~~l~~~---~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~   86 (186)
T 1jbj_A           11 SISGTSVELTCPLDSDENL-KWEKNGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAK   86 (186)
T ss_dssp             EEETTEEEEECSSCCCTTC-EEEETTEEECSC---CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCC
T ss_pred             EeCCcEEEEEEeCCCCCce-EEEECCEECCCC---CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccc
Confidence            4568899999999984454 444433222111   234799999 9999999999999998774 22222221  11111


Q ss_pred             E----------------E----ecCCc---eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEE
Q psy14060        136 F----------------T----KKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI  192 (283)
Q Consensus       136 ~----------------~----~~~~~---~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~  192 (283)
                      .                .    .....   ..+..|+++.|.|.+   |.|.+.|+|++..+.....       ....|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~  156 (186)
T 1jbj_A           87 KDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWN  156 (186)
T ss_dssp             CCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCE
T ss_pred             cccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEE
Confidence            0                0    00001   134489999999988   7899999999999864322       334599


Q ss_pred             EcCCCCCCCEEEEEEEEeCCcee
Q psy14060        193 MRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      |.++..+|+|.|+|.|.|..|..
T Consensus       157 i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          157 LGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EEETTSCCEEEEEEEESSCEEEE
T ss_pred             ECCCCcCcCEEEEEEEEcCcCCc
Confidence            99999999999999999998775

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.79  E-value=6.7e-19  Score=137.64  Aligned_cols=156  Identities=10%  Similarity=0.073  Sum_probs=109.4

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.++|.|.+.+.+... .|..                    ...++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (213)
T 3r06_A           12 PASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQY   91 (213)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             EecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEecc
Confidence            366788999999999986221 3322                    2456666666678899999999999999999998


Q ss_pred             ecce--ee---eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecC--CEEEEEeCCEecCCCC--CeEEEEe--C
Q psy14060        118 KYYA--LS---DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL--PTIKWFREDFPITSSP--DFQIHTF--S  186 (283)
Q Consensus       118 n~~~--~~---~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~~--~~~~~~~--~  186 (283)
                      |..+  ..   .+.......+|.+...+....+..|+.+.|.|.+.+.++  +.+.|+|++..+....  .......  +
T Consensus        92 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g  171 (213)
T 3r06_A           92 YNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDS  171 (213)
T ss_dssp             SSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTC
T ss_pred             cCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCC
Confidence            8643  11   122222356777776666666667888999999998754  3899999999876431  0000000  0


Q ss_pred             ---CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        187 ---TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       187 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                         ..+.|.|.....+|.|.|+|.+.|....
T Consensus       172 ~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          172 TYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             CEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence               1235778888888999999999998644

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=2.5e-19  Score=140.41  Aligned_cols=140  Identities=19%  Similarity=0.312  Sum_probs=110.6

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCE--EEEEEcCCCCCCCEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTK--SILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C  206 (283)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+......  ..+.|.++..+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            458888888888999999999999999998999999999999886542  2222222221  123678899999999999


Q ss_pred             EEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEEecC
Q psy14060        207 IAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       207 ~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~l~~  279 (283)
                      .+.|..|.... ...+.|..         .+|.+...+....+..|+.+.|.|.+ .+.|.|.+.|+++|..+..
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~---------~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~  152 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAV---------LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDD  152 (217)
T ss_dssp             EEEETTEEEECCCEEEEECE---------ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECC
T ss_pred             EEecCCCccccccceEEEEE---------eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCc
Confidence            99999887533 45666654         24556666677889999999999999 8999999999999999873

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.79  E-value=1.2e-17  Score=129.50  Aligned_cols=161  Identities=9%  Similarity=-0.031  Sum_probs=105.8

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEE-------EEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEM-------EHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ++|.+...+...+.+|+.++|.|.+.+......|...+.....       ........|.|.+++.+|+|.|+|.+.|..
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~   86 (201)
T 1nkr_A            7 RKPSLLAHPGPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH   86 (201)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTT
T ss_pred             CCCeEEEEcCCccCCCCcEEEEEeccCCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCC
Confidence            3566665555567889999999999754322234333322211       111235789999999999999999998642


Q ss_pred             e------eeeeeccC---CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-CEEE
Q psy14060        121 A------LSDLSEQK---PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSI  190 (283)
Q Consensus       121 ~------~~~~~~~~---~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-~~~~  190 (283)
                      .      .+....+.   ...+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+...........+ ....
T Consensus        87 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  164 (201)
T 1nkr_A           87 SPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQAD  164 (201)
T ss_dssp             BTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEE
T ss_pred             CCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEE
Confidence            1      11111222   234566665554 46889999999999986 67899999999866432111111111 1457


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCC
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |.|.++.  |+|.|+|.|.+..
T Consensus       165 L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          165 FPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEECC--SCEEEEEEEEETT
T ss_pred             EEeCCcC--CCeeEEEEEEcCC
Confidence            9999998  9999999998764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.79  E-value=1.8e-18  Score=138.33  Aligned_cols=125  Identities=10%  Similarity=0.053  Sum_probs=88.6

Q ss_pred             EEEEEccCCCCCCeEEEEEEEecceee------eeeccCCCC---CCeEEe-cCCceeecCCCcEEEEEEEeeecCCEEE
Q psy14060         97 QERVVDASELDDDGYYAITERKYYALS------DLSEQKPAK---PPVFTK-KIQPCRAFEQDQARFEVEFDGDPLPTIK  166 (283)
Q Consensus        97 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~------~~~~~~~~~---~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~~~~  166 (283)
                      ..|.|.+++.+|+|.|+|.+.|..+..      ....+.+..   +|.+.. .+....+..|+.+.|.|.+.+.|.|.+.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~  169 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT  169 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence            479999999999999999999876521      122333322   333333 3445677789999999999999999999


Q ss_pred             EEeCCEecCCCCCe----------------------EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc---eeEEEEEE
Q psy14060        167 WFREDFPITSSPDF----------------------QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG---KAKCSANL  221 (283)
Q Consensus       167 W~k~~~~~~~~~~~----------------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l  221 (283)
                      |+|++..+......                      ..... ....|.|.++..+|+|.|+|.|.|..|   .....+.|
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            99998877542211                      11111 124799999999999999999999554   44444444


Q ss_pred             E
Q psy14060        222 V  222 (283)
Q Consensus       222 ~  222 (283)
                      .
T Consensus       249 ~  249 (250)
T 2fbo_J          249 K  249 (250)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.79  E-value=4.5e-19  Score=138.44  Aligned_cols=165  Identities=12%  Similarity=0.049  Sum_probs=109.0

Q ss_pred             eeeecCcEEEEEEEccCccc--e--EEeecCC------------------------CEEEE---EcCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI--V--RKITATE------------------------TTEME---HKGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i--~--~~~~~~~------------------------~~~~~---~~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+..  .  .|.....                        ++...   ......+|.|.+++.+
T Consensus        10 tv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   89 (218)
T 4frw_A           10 TVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA   89 (218)
T ss_dssp             EEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGG
T ss_pred             EEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHH
Confidence            36678899999999987721  1  3332111                        11110   0112456999999999


Q ss_pred             CCeEEEEEEEecceeee--eeccCC-CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE
Q psy14060        108 DDGYYAITERKYYALSD--LSEQKP-AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT  184 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~~~--~~~~~~-~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~  184 (283)
                      |+|.|.|.+.+..+...  ...+.+ ..++..........+..|+.+.+.|.+.+.|.|.++|++++..+..........
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~  169 (218)
T 4frw_A           90 DEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSR  169 (218)
T ss_dssp             GCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSS
T ss_pred             HCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCC
Confidence            99999999887654211  111111 223333444555677888999999999999999999999987664321111000


Q ss_pred             -eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        185 -FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       185 -~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                       ....+.|.|..+..+|.|.|+|.|.|..|.....+.+.|
T Consensus       170 ~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          170 SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence             011346999999999999999999999987666555544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.79  E-value=9.6e-18  Score=135.01  Aligned_cols=153  Identities=11%  Similarity=0.058  Sum_probs=109.0

Q ss_pred             eeeecCcEEEEEEEccC--c--cceEEee-------------------------cCCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGD--K--EIVRKIT-------------------------ATETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~--~--~i~~~~~-------------------------~~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++|+|.|.+.+.  +  .+ .|..                         ...++.+..  .+...+|.|.+++.+
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   95 (256)
T 3juy_B           17 VKKPGASVKVSCQASGYRFSHFTV-HWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   95 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCE-EEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCeEEEEEEeecccccCceE-EEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcc
Confidence            36678899999999883  2  22 2211                         123566653  345788999999999


Q ss_pred             CCeEEEEEEEec------------ce-eeeeeccCCCC---------------CCeEEecCCceeecCCCcEEEEEEEee
Q psy14060        108 DDGYYAITERKY------------YA-LSDLSEQKPAK---------------PPVFTKKIQPCRAFEQDQARFEVEFDG  159 (283)
Q Consensus       108 D~G~Y~C~a~n~------------~~-~~~~~~~~~~~---------------~p~~~~~~~~~~~~~g~~v~l~C~~~g  159 (283)
                      |+|.|.|.+.|.            .. ......+.+..               ++.+...+....+.+|++++|.|.+.+
T Consensus        96 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  175 (256)
T 3juy_B           96 DTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSH  175 (256)
T ss_dssp             GCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESS
T ss_pred             cCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECC
Confidence            999999999886            11 11111222221               456677778889999999999999998


Q ss_pred             ecC-CEEEEEeC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        160 DPL-PTIKWFRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       160 ~p~-~~~~W~k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+. +.+.|||.  +..+.            ...++.+.......+|.|.++..+|+|.|+|.+.|..
T Consensus       176 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          176 SIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            776 89999983  22111            2345666666677889999999999999999998854

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.79  E-value=1e-18  Score=137.45  Aligned_cols=165  Identities=10%  Similarity=0.051  Sum_probs=110.3

Q ss_pred             eeecCcEEEEEEEccCcc-----ce-EEeecC-------------------CCEEEEE---cCCEEEEEEccCCCCCCeE
Q psy14060         60 IHTAKSQQVQKEKKGDKE-----IV-RKITAT-------------------ETTEMEH---KGKIQERVVDASELDDDGY  111 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~-----i~-~~~~~~-------------------~~~~~~~---~~~~~~L~i~~~~~~D~G~  111 (283)
                      +.+|+.++|.|.+.+.+.     .. .|....                   .++.+..   ..+..+|.|.+++.+|+|.
T Consensus         7 ~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   86 (222)
T 4i0k_A            7 ALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGS   86 (222)
T ss_dssp             CCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSC
T ss_pred             EECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEE
Confidence            667889999999988752     11 333222                   1222111   0125679999999999999


Q ss_pred             EEEEEEecceeeeeeccCCCC---CCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeC-CEecCCCCCeEEEEe-
Q psy14060        112 YAITERKYYALSDLSEQKPAK---PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFRE-DFPITSSPDFQIHTF-  185 (283)
Q Consensus       112 Y~C~a~n~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~-~~~~~~~~~~~~~~~-  185 (283)
                      |+|.+.+.........+.+..   +|.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|+++ +..+........... 
T Consensus        87 Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~  165 (222)
T 4i0k_A           87 YTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANE  165 (222)
T ss_dssp             EEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECT
T ss_pred             EEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCC
Confidence            999999864433333444433   35544433 3467789999999999 7889999999994 444433222222211 


Q ss_pred             -CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        186 -STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       186 -~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                       +....|.|.++..+|.|.|+|.+.|..|.....+.|.|..
T Consensus       166 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          166 RGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             TSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence             2234578899999999999999999999999999988875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.78  E-value=3.1e-18  Score=133.56  Aligned_cols=135  Identities=11%  Similarity=0.080  Sum_probs=104.7

Q ss_pred             cCCCcEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        146 FEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      ..++.+.|.|.+.+. |.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+.|..+.......+.+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            356778899998875 5789999999999988888888888888889999999999999999999988887766666543


Q ss_pred             eccCC----------CCCCCCCCeEE-ecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        225 EKRQG----------GRGGVVPPSFL-TTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       225 ~~~~~----------~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      .....          .......|.+. ..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~  161 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT  161 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCC
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccC
Confidence            10000          00000123343 3455678999999999999999999999999999998754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.78  E-value=4.7e-17  Score=143.85  Aligned_cols=131  Identities=15%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             CceeecCCCcEEEEEEEeeecC--CEEEEEeCCEecCCCCCe-EEE--EeC---CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL--PTIKWFREDFPITSSPDF-QIH--TFS---TKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~~~~-~~~--~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ....+..|+.+.|.|.+.|..+  ..++|+|++..+...... ...  ..+   ..+.|.|......|.|.|+|.|.|..
T Consensus       305 ~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~  384 (512)
T 1zvo_C          305 AVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS  384 (512)
T ss_pred             ChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence            3344667999999999988633  489999999876521100 011  111   12469999999999999999999987


Q ss_pred             ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEE-EEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        213 GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLAR-FDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       213 g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~-L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      +... ...+......    ....+|.+...+...   .|+.+. |.|.+.|.+++  .+.|++||+++..
T Consensus       385 ~~~~-~~~~~~~~~~----~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  446 (512)
T 1zvo_C          385 LPPQ-RLMALREPAA----QAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNT  446 (512)
T ss_pred             CCCC-ceeEEeecCC----CCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcC
Confidence            7543 3333221100    000356554433322   789999 99999996544  5899999998864

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.78  E-value=2.1e-18  Score=138.60  Aligned_cols=166  Identities=10%  Similarity=0.031  Sum_probs=113.9

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.|.+    .+. |..                         ...++.+...  ....+|.|.+++.+
T Consensus        12 ~v~~G~~v~L~C~~~g~~~~~~~v~-W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   90 (253)
T 3uzq_A           12 LVKPGASVRLSCTASGFNIKDTYMS-WVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSG   90 (253)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSCEE-EEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCcEEEEEEeeCCcccCceEE-EEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcc
Confidence            366788999999998843    221 111                         1245555532  34788999999999


Q ss_pred             CCeEEEEEEEeccee--eeeeccCCC---------------CCCeEEecCCceeecCCCcEEEEEEEeeecCC----EEE
Q psy14060        108 DDGYYAITERKYYAL--SDLSEQKPA---------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP----TIK  166 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~--~~~~~~~~~---------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~----~~~  166 (283)
                      |+|.|+|.+.|..+.  .....+.+.               .+|.+...+....+.+|++++|.|.+.+.+.+    .+.
T Consensus        91 DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~  170 (253)
T 3uzq_A           91 DTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMH  170 (253)
T ss_dssp             GCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEE
T ss_pred             cCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEE
Confidence            999999999885432  111122222               35667777777899999999999999987766    899


Q ss_pred             EEeC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEe
Q psy14060        167 WFRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEE  225 (283)
Q Consensus       167 W~k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  225 (283)
                      |||+  +..+.            ...++..........|.|.++..+|+|.|+|.+.|..+..- .-..|.|..
T Consensus       171 W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          171 WYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             EEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence            9984  22111            12355555566677899999999999999999998654322 224566654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=1.2e-17  Score=136.49  Aligned_cols=165  Identities=10%  Similarity=0.075  Sum_probs=114.3

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++|+|.|.+.|.+    .+. |..                         ...++.+..  .+...+|.|.+++.+
T Consensus        37 ~v~~G~~v~L~C~~~g~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  115 (282)
T 1qok_A           37 LVRSGTSVKLSCTASGFNIKDSYMH-WLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSE  115 (282)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEE-EEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCeEEEEEeccCCCCCCceEE-EEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChh
Confidence            467788999999998874    232 211                         124555554  345789999999999


Q ss_pred             CCeEEEEEEEecce------eeeeeccCCC---------------CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEE
Q psy14060        108 DDGYYAITERKYYA------LSDLSEQKPA---------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK  166 (283)
Q Consensus       108 D~G~Y~C~a~n~~~------~~~~~~~~~~---------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~  166 (283)
                      |+|.|.|.+.|..+      ......+.+.               .++.+...+....+.+|++++|.|.+.+.+ +.+.
T Consensus       116 DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~  194 (282)
T 1qok_A          116 DTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMH  194 (282)
T ss_dssp             GCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCE
T ss_pred             hCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEE
Confidence            99999999998753      1111122222               234455566677899999999999999988 8999


Q ss_pred             EEe--CCEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEEEEEe
Q psy14060        167 WFR--EDFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVVEE  225 (283)
Q Consensus       167 W~k--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  225 (283)
                      |||  ++..+.            ...++.+.......+|.|.++..+|+|.|+|.+.|..... .....|.|..
T Consensus       195 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          195 WFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            999  554331            1345666555667789999999999999999998754322 2224555543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.78  E-value=3.3e-18  Score=136.03  Aligned_cols=153  Identities=8%  Similarity=0.066  Sum_probs=103.5

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec-----------------------CCCEEEEE-cCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA-----------------------TETTEMEH-KGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~-----------------------~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|+.++|.|. .+.+... .|...                       ..++.+.. .....+|.|.+++.+|+|.|+
T Consensus        11 ~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~   89 (238)
T 2p1y_A           11 VAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYF   89 (238)
T ss_dssp             EEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEE
T ss_pred             EEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEE
Confidence            3677889999999 6666222 22221                       23555443 234568999999999999999


Q ss_pred             EEEEeccee------eeeeccCCCCCC------------eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE---
Q psy14060        114 ITERKYYAL------SDLSEQKPAKPP------------VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF---  172 (283)
Q Consensus       114 C~a~n~~~~------~~~~~~~~~~~p------------~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~---  172 (283)
                      |.+.|..+.      .....+.+...+            .+...+....+.+|+++.|.|.+.+.|.+.+.|+|++.   
T Consensus        90 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~  169 (238)
T 2p1y_A           90 CASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEG  169 (238)
T ss_dssp             EEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSC
T ss_pred             EEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCC
Confidence            999987431      111122222221            45556677789999999999999998899999999641   


Q ss_pred             --ec---------CCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        173 --PI---------TSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       173 --~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                        .+         ....++.+..  .....+|.|.++..+|+|.|+|.+.|..
T Consensus       170 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          170 PALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence              11         0123444432  2335689999999999999999999974

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.78  E-value=5.5e-19  Score=143.02  Aligned_cols=183  Identities=9%  Similarity=0.034  Sum_probs=108.3

Q ss_pred             eeeecCcEEEEEEEc---cCccce-EEeecC------------------------CCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKK---GDKEIV-RKITAT------------------------ETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~---g~~~i~-~~~~~~------------------------~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.++|.|.+.   +.+... .|....                        .++.+.  .......|.|.+++.+|
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   95 (268)
T 3mj6_A           16 RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKAD   95 (268)
T ss_dssp             EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGG
T ss_pred             EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhH
Confidence            367788999999997   555222 222211                        233221  11223679999999999


Q ss_pred             CeEEEEEEEeccee---eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEE---eeecCCEEEEEeCCEe-cCC-----
Q psy14060        109 DGYYAITERKYYAL---SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF---DGDPLPTIKWFREDFP-ITS-----  176 (283)
Q Consensus       109 ~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~~~W~k~~~~-~~~-----  176 (283)
                      +|.|+|.+.|..+.   .....+.+.  +   ..+....+..|+.+.|.|.+   .+.|.+.+.|++++.. ...     
T Consensus        96 ~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~  170 (268)
T 3mj6_A           96 EGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLS  170 (268)
T ss_dssp             CEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEE
T ss_pred             CEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEE
Confidence            99999999987542   112222221  1   12345778899999999999   5668899999994321 110     


Q ss_pred             ------------CC----CeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCe
Q psy14060        177 ------------SP----DFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS  238 (283)
Q Consensus       177 ------------~~----~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~  238 (283)
                                  ..    +..+..  ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..         .+|.
T Consensus       171 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~---------~~p~  241 (268)
T 3mj6_A          171 YDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ---------DEFQ  241 (268)
T ss_dssp             EETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC---------C---
T ss_pred             ecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc---------CCCe
Confidence                        00    111100  12345799999999999999999999999988888998865         4677


Q ss_pred             EEecCCceEEcCCCeEE
Q psy14060        239 FLTTISSAVINVGQLAR  255 (283)
Q Consensus       239 ~~~~~~~~~v~~g~~v~  255 (283)
                      +...+....+..|+.+.
T Consensus       242 ~~~~p~~~~~~~~q~~~  258 (268)
T 3mj6_A          242 RTISPTPPTDKGQQGIL  258 (268)
T ss_dssp             -----------------
T ss_pred             eeeCCCCCCCCcceecc
Confidence            77777666666666544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.78  E-value=1.7e-17  Score=133.46  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=122.1

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-ccCccce-EEeecCCCEEEEEcCCEE
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-KGDKEIV-RKITATETTEMEHKGKIQ   97 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~~~i~-~~~~~~~~~~~~~~~~~~   97 (283)
                      .+.|.|.|..+..  ...|.|...+.      ........+.+|+.+.|.|.+ .+.|... .|...+.......  ...
T Consensus        62 ~Y~C~~~~~~~s~--~~~l~v~~~~~------~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~--~~~  131 (262)
T 3rjd_A           62 EYRCQRGLSGRSD--PIQLEIHRGWL------LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH--WNS  131 (262)
T ss_dssp             EEEEEESSSCCCC--CEEEEEECSSE------EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE--ECC
T ss_pred             EEEEEEecCCccc--cEEEEEeccce------EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC--CCC
Confidence            4678888876543  55666665421      112223346788899999999 5666333 5554444333322  245


Q ss_pred             EEEEccCCCCCCeEEEEEEEeccee-eeeeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeecC-CE----EEEE
Q psy14060         98 ERVVDASELDDDGYYAITERKYYAL-SDLSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PT----IKWF  168 (283)
Q Consensus        98 ~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~----~~W~  168 (283)
                      .|.|.+++.+|+|.|+|.+.|..+. .....+.+.   .+|.+...+ ...+..|+.+.|.|.+.+.|. +.    +.|+
T Consensus       132 ~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~  210 (262)
T 3rjd_A          132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY  210 (262)
T ss_dssp             CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEE
T ss_pred             eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEE
Confidence            7899999999999999999998763 222222222   355555444 566889999999999998775 43    7899


Q ss_pred             eCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        169 REDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       169 k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      +++..+...        .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       211 ~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          211 MGSKTLRGR--------NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             ETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             eCCcEeccc--------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            998876421        233469999999999999999999999864

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.78  E-value=4e-18  Score=136.65  Aligned_cols=151  Identities=9%  Similarity=0.037  Sum_probs=105.7

Q ss_pred             eeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|+.++|.|.+.+.+... .|..                    ...++.....+...+|.|.+++.+|+|.|+|.+.|
T Consensus        16 v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   95 (250)
T 3esu_F           16 ASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGN   95 (250)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             eeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEee
Confidence            56788999999999887222 2222                    13566666667788999999999999999999988


Q ss_pred             ccee--eeeeccCCC-------------------CCCeEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe
Q psy14060        119 YYAL--SDLSEQKPA-------------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP  173 (283)
Q Consensus       119 ~~~~--~~~~~~~~~-------------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~  173 (283)
                      ..+.  .....+.+.                   .++.+...+....+.+|+++.|.|.+.+.+  .+.+.|||+  +..
T Consensus        96 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~  175 (250)
T 3esu_F           96 TLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQG  175 (250)
T ss_dssp             SSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSC
T ss_pred             CCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCC
Confidence            6441  111122222                   123344455667889999999999998866  789999997  332


Q ss_pred             cC-----------------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        174 IT-----------------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       174 ~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +.                 ...++.+...  ....+|.|.++..+|+|.|+|.+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          176 PEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            21                 0134544433  4456799999999999999999987

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.78  E-value=3.6e-20  Score=155.17  Aligned_cols=200  Identities=14%  Similarity=0.091  Sum_probs=137.9

Q ss_pred             ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEE-----EccCccce-EE------eecC-C
Q psy14060         20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKE-----KKGDKEIV-RK------ITAT-E   86 (283)
Q Consensus        20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~-----~~g~~~i~-~~------~~~~-~   86 (283)
                      .+.|.|.|..|..+....|.|...+.... +.. ... ..+.+|+.+.|.|.     +.|.|... .|      +... .
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~-~~~-~~~-~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~  171 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFL-PFI-SYP-QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE  171 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGH-HHH-CEE-EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCS
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCccc-ccc-ccc-eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCc
Confidence            46789999999999999999988653210 111 111 24778899999999     67776322 22      2222 3


Q ss_pred             CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-----eeeeccCC-----CCCCeEEecCCceeecCCCcEEEEEE
Q psy14060         87 TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-----SDLSEQKP-----AKPPVFTKKIQPCRAFEQDQARFEVE  156 (283)
Q Consensus        87 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-----~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~v~l~C~  156 (283)
                      ++....  ....|.|.+++.+|+|.|+|.+.|..+.     .....+.+     ..+|.+...+....+..|+.+.|.|.
T Consensus       172 ~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~  249 (339)
T 3o4o_C          172 KFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCK  249 (339)
T ss_dssp             SEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCC
T ss_pred             eeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEE
Confidence            333322  2348999999999999999999987652     22222222     23667776667778899999999999


Q ss_pred             E---eeec-CCEEEEEeCCEecCCC---------CCeEEEEeCC---EEEEEEcCCCCCCC-EEEEEEEEeCCceeEEEE
Q psy14060        157 F---DGDP-LPTIKWFREDFPITSS---------PDFQIHTFST---KSILIMRQVFMEDS-GVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       157 ~---~g~p-~~~~~W~k~~~~~~~~---------~~~~~~~~~~---~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~  219 (283)
                      +   .|.| .+.+.|++++..+...         .++.+...+.   ...|.|.++..+|. |.|+|.|.|..|.....+
T Consensus       250 ~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~  329 (339)
T 3o4o_C          250 VFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT  329 (339)
T ss_dssp             EEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBC
T ss_pred             EECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEE
Confidence            9   8888 7899999998876421         1121211221   12699999999997 999999999999988766


Q ss_pred             EEEEE
Q psy14060        220 NLVVE  224 (283)
Q Consensus       220 ~l~v~  224 (283)
                      .+.+.
T Consensus       330 ~~~~~  334 (339)
T 3o4o_C          330 TVKEH  334 (339)
T ss_dssp             CCCC-
T ss_pred             EhhHh
Confidence            65443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.78  E-value=1.2e-17  Score=134.31  Aligned_cols=153  Identities=10%  Similarity=0.048  Sum_probs=105.3

Q ss_pred             eeeecCcEEEEEEEccC--c--cceEEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGD--K--EIVRKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~--~--~i~~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|++++|.|.+.+.  +  .+ .|..                    ...++.....+...+|.|.+++.+|+|.|+|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (256)
T 3ux9_B           13 SGAPGQRVTISCSGSSSNIGSNYV-SWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYC   91 (256)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSCC-EEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCCCceE-EEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            46778899999999876  3  22 2221                    2346776666678899999999999999999


Q ss_pred             EEEecce----eeeeeccCCCCCC--------------------eEEecCCceeecCCCcEEEEEEEeeec--CCEEEEE
Q psy14060        115 TERKYYA----LSDLSEQKPAKPP--------------------VFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWF  168 (283)
Q Consensus       115 ~a~n~~~----~~~~~~~~~~~~p--------------------~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~  168 (283)
                      .+.+..+    ......+.+..++                    ..+..+....+.+|++++|.|.+.+.+  .+.+.||
T Consensus        92 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  171 (256)
T 3ux9_B           92 QVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWV  171 (256)
T ss_dssp             EEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             EEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEE
Confidence            9988532    1111222222221                    122333445688999999999998866  7899999


Q ss_pred             eC--CEec------C-----------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        169 RE--DFPI------T-----------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       169 k~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |+  +..+      .           ...++.+...  ....+|.|.++..+|+|.|+|.+.|..
T Consensus       172 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          172 RQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            86  2211      1           1125555544  346679999999999999999999864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=1.5e-17  Score=132.34  Aligned_cols=152  Identities=9%  Similarity=0.015  Sum_probs=106.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|+.|+|.|.+.+.+    ... .|...                    ..++.+...+...+|.|.+++.+|+|.|+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   91 (240)
T 1moe_A           12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYY   91 (240)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEE
Confidence            366788999999999886    222 33221                    24666665667789999999999999999


Q ss_pred             EEEEeccee--eeeeccCCCC------CCeEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEecC------
Q psy14060        114 ITERKYYAL--SDLSEQKPAK------PPVFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPIT------  175 (283)
Q Consensus       114 C~a~n~~~~--~~~~~~~~~~------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~~------  175 (283)
                      |.+.|..+.  .....+.+..      ++.+...+....+..|+++.|.|.+.+.|  .+.+.|+|+  +..+.      
T Consensus        92 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~  171 (240)
T 1moe_A           92 CQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRID  171 (240)
T ss_dssp             EEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEE
T ss_pred             EEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEc
Confidence            999987432  1111222222      23345556777899999999999999876  468999995  22110      


Q ss_pred             -----------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        176 -----------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       176 -----------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                                 ...++.+...  ....+|.|.++..+|+|.|+|.+.+
T Consensus       172 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          172 PANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             ccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence                       1234555433  3457899999999999999999974

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.78  E-value=1.5e-17  Score=135.48  Aligned_cols=153  Identities=11%  Similarity=0.006  Sum_probs=107.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|++++|.|.+.+.+... .|..                    ...++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus        23 ~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  102 (276)
T 3auv_A           23 SASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQH  102 (276)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEe
Confidence            366788999999999887221 2221                    1346666666677899999999999999999999


Q ss_pred             eccee--eeeeccCCCC--------------CCeEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec---
Q psy14060        118 KYYAL--SDLSEQKPAK--------------PPVFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI---  174 (283)
Q Consensus       118 n~~~~--~~~~~~~~~~--------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~---  174 (283)
                      |..+.  .....+.+..              ++.++..+....+..|+++.|.|.+.+.+  .+.+.|+|++  ..+   
T Consensus       103 n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l  182 (276)
T 3auv_A          103 YTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWV  182 (276)
T ss_dssp             SSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEE
T ss_pred             cCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEE
Confidence            87432  1112222222              22334445677899999999999999865  5899999963  111   


Q ss_pred             --------------CCCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        175 --------------TSSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       175 --------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                                    ....++.+...  .....|.|.++..+|+|.|+|.+.|.
T Consensus       183 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          183 AGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence                          01235555543  34568999999999999999999997

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=3.5e-19  Score=139.18  Aligned_cols=156  Identities=10%  Similarity=0.070  Sum_probs=107.0

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|+.++|.|.+.+.+... .|...                    ..++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   89 (212)
T 1nfd_E           10 SVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSS   89 (212)
T ss_dssp             EEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             EEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEEE
Confidence            367788999999998876221 33221                    356666666677899999999999999999999


Q ss_pred             ec-c-e----eeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe-EEEEeC
Q psy14060        118 KY-Y-A----LSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF-QIHTFS  186 (283)
Q Consensus       118 n~-~-~----~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~-~~~~~~  186 (283)
                      |. . .    ......+  ....+|.+........+..|+.+.|.|.+.|. |. +.+.|++++..+...... ......
T Consensus        90 n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~  169 (212)
T 1nfd_E           90 YGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG  169 (212)
T ss_dssp             ETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSS
T ss_pred             cccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecC
Confidence            62 1 1    1111111  12346666654444455678999999999987 54 799999999887643210 000000


Q ss_pred             ----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        187 ----TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       187 ----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                          ..+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       170 ~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          170 QNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             SCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                1235889999999999999999998754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.78  E-value=2.5e-18  Score=134.72  Aligned_cols=157  Identities=10%  Similarity=0.060  Sum_probs=105.3

Q ss_pred             eeeecCcEEEEEEE-ccCc---cceEEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEK-KGDK---EIVRKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~-~g~~---~i~~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|+.++|.|.+ .+.+   .+ .|..                    ...++.+...+....|.|.+++.+|+|.|+|
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~~~~v-~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (216)
T 2xzc_L           11 SAAPGQKVTISCSGSSSNIGNNYV-SWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC   89 (216)
T ss_dssp             EECTTCCEEEEEECCTTTGGGSCC-EEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCCeEEEEEEeecCCCCCCeE-EEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEE
Confidence            36678899999995 4442   33 2322                    1236666656678899999999999999999


Q ss_pred             EEEecce---eee--eeccC-CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCe--EEEE
Q psy14060        115 TERKYYA---LSD--LSEQK-PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDF--QIHT  184 (283)
Q Consensus       115 ~a~n~~~---~~~--~~~~~-~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~--~~~~  184 (283)
                      .+.|..+   ...  ...+. ...+|.+...........|+.+.|.|.+.|. |.+ .+.|+|++..+......  ....
T Consensus        90 ~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~  169 (216)
T 2xzc_L           90 GTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD  169 (216)
T ss_dssp             EEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC
T ss_pred             EEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCccc
Confidence            9998764   111  11222 2246666654333333468899999999984 554 89999999987653000  0000


Q ss_pred             eC-----CEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        185 FS-----TKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       185 ~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..     ..+.|.|..+..+|.|.|+|.|.|......
T Consensus       170 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          170 SKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             TTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            01     123689999999999999999999875543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.77  E-value=6.1e-18  Score=135.06  Aligned_cols=153  Identities=10%  Similarity=0.048  Sum_probs=104.5

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|++++|.|.+.+.+... .|..                    ...++.+...+....|.|.+++.+|+|.|.|.+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (242)
T 2znx_A           12 SVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQS   91 (242)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEe
Confidence            366788999999999886221 2221                    1346666555667899999999999999999998


Q ss_pred             eccee--eeeeccCCCCCC-------------eEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec----
Q psy14060        118 KYYAL--SDLSEQKPAKPP-------------VFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI----  174 (283)
Q Consensus       118 n~~~~--~~~~~~~~~~~p-------------~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~----  174 (283)
                      |..+.  .....+.+..+|             .....+....+.+|++++|.|.+.+.|  .+.+.|+|++  ..+    
T Consensus        92 n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~  171 (242)
T 2znx_A           92 NSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMG  171 (242)
T ss_dssp             SSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE
T ss_pred             cCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEE
Confidence            87431  111223332222             233333445689999999999998865  4789999852  221    


Q ss_pred             ---C---------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        175 ---T---------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       175 ---~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                         .         ...++.+...  ....+|.|.++..+|+|.|+|.+.|.
T Consensus       172 ~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          172 YVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             EEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence               0         1234555432  34568999999999999999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.77  E-value=3.9e-18  Score=128.48  Aligned_cols=152  Identities=8%  Similarity=-0.051  Sum_probs=105.7

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCc-cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDK-EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL  125 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~-~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~  125 (283)
                      +|.+...+.. .+.+|+.+.|.|.+.+.| ... .|...+....    .....+.|.+++.+|+|.|+|.+.|..... .
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~----~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~-~   78 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP----THTQPSYRFKANNNDSGEYTCQTGQTSLSD-P   78 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECT----TCCSSEEEEECCGGGCEEEEEEETTSBCCC-C
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcc----cCccceEEEecccccCeEEEEEEeCCCceE-e
Confidence            4555544442 478899999999999976 222 4443322111    122345677899999999999998764432 2


Q ss_pred             eccCCCCCCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       126 ~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ..+.+..++.+.. .....+..|+.+.|.|.+. +.|.+.+.|++++..+..        ......|.|.++..+|+|.|
T Consensus        79 ~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i~~v~~~d~G~Y  149 (170)
T 3ry4_A           79 VHLTVLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQANHSHSGDY  149 (170)
T ss_dssp             EEEEEECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEESSCCGGGCEEE
T ss_pred             EEEEEECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEEEeccccCCEEE
Confidence            2334444454333 3456788999999999995 456689999999987542        12234699999999999999


Q ss_pred             EEEEEeCCce
Q psy14060        205 AVIAENRGGK  214 (283)
Q Consensus       205 ~C~a~n~~g~  214 (283)
                      +|.+.|..|.
T Consensus       150 ~C~a~n~~g~  159 (170)
T 3ry4_A          150 HCTGNIGYTL  159 (170)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEEeCcCc
Confidence            9999999886

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=3.2e-18  Score=133.35  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=103.0

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEec------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ..+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+.  .  ..|.|.++..+|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--S--SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--T--TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee--c--eeEEEcccCcccC
Confidence            45566677788999999999999999899999999987552            112333332  2  5799999999999


Q ss_pred             EEEEEEEEeCCc--eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEE-EEeeCCCeeEEeeCCE-Ee
Q psy14060        202 GVFAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAK-ISATKPLDVYWLKVSS-LS  277 (283)
Q Consensus       202 G~Y~C~a~n~~g--~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~g~-~l  277 (283)
                      |.|+|.+.|..|  .....+.|.|..          +|.+...+....+.+|+.+.|.|. +.+.|.|.+.|+++|. .+
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l  147 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLV----------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML  147 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEB----------CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEc----------CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence            999999999877  455667777774          444444444567899999999999 7899999999999999 66


Q ss_pred             cC
Q psy14060        278 DV  279 (283)
Q Consensus       278 ~~  279 (283)
                      ..
T Consensus       148 ~~  149 (212)
T 1f97_A          148 TA  149 (212)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.77  E-value=1.7e-17  Score=132.80  Aligned_cols=153  Identities=8%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             eeeecCcEEEEEEEccCc-----cce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-----EIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-----~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.|.+.+.+     ... .|..                    ...++.+...+....|.|.+++.+|+|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   91 (247)
T 1svz_A           12 PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIY   91 (247)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEE
Confidence            366788999999998775     222 3322                    13466665556778999999999999999


Q ss_pred             EEEEEeccee--eeeeccCCCC-------------CCeEEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee
Q psy14060        113 AITERKYYAL--SDLSEQKPAK-------------PPVFTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP  173 (283)
Q Consensus       113 ~C~a~n~~~~--~~~~~~~~~~-------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~  173 (283)
                      .|.+.|..+.  .....+.+..             ++.....+....+..|++++|.|.+.+.+  .+.+.|||++  ..
T Consensus        92 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~  171 (247)
T 1svz_A           92 YCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGD  171 (247)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCC
T ss_pred             EEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCC
Confidence            9999887431  1112222222             22233444455689999999999998864  5789999963  11


Q ss_pred             c------C-----------CCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        174 I------T-----------SSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       174 ~------~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +      .           ...++.+..  ......|.|.++..+|+|.|+|.+.|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          172 LKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            1      0           023455443  234568999999999999999999985

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=1.1e-17  Score=130.67  Aligned_cols=136  Identities=11%  Similarity=0.023  Sum_probs=103.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec----C--------CCCCeEEEEeCCEEEEEEcCCCCCCCE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI----T--------SSPDFQIHTFSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G  202 (283)
                      ...+ ...+.+|+.+.|.|.+.+.|.+.+.|+|.  +...    .        ...++.+........|.|.++..+|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (213)
T 3mj8_L            5 TQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEA   83 (213)
T ss_dssp             BCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCE
Confidence            3344 67889999999999999889999999982  2111    0        223566666677788999999999999


Q ss_pred             EEEEEEEeCCc---eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC-C-CeeEEeeCCEEe
Q psy14060        203 VFAVIAENRGG---KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK-P-LDVYWLKVSSLS  277 (283)
Q Consensus       203 ~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~-~~v~W~~~g~~l  277 (283)
                      .|+|.+.|..+   .......|.|....      ..+|.+...+....+..|+.++|.|.+.|.+ + +.+.|++||+.+
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L           84 DYYCQSWDGTNSAWVFGSGTKVTVLGQP------NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             EEEEEEEETTTTEEEEBCCEEEEEECSC------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEEEEeccCCcceeEEcCceEEEEeCCC------CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            99999999987   33445677776321      1367777666555566899999999999863 3 389999999988


Q ss_pred             cC
Q psy14060        278 DV  279 (283)
Q Consensus       278 ~~  279 (283)
                      ..
T Consensus       158 ~~  159 (213)
T 3mj8_L          158 TQ  159 (213)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.77  E-value=8.4e-18  Score=133.42  Aligned_cols=158  Identities=9%  Similarity=0.064  Sum_probs=110.0

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|++++|.|.+.+.+... .|..                    ...++.....+...+|.|.+++.+|+|.|+|.+.
T Consensus        35 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~  114 (237)
T 3sob_L           35 SASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQS  114 (237)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeec
Confidence            477789999999999886221 2222                    1356666666678899999999999999999998


Q ss_pred             ecce----e-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCC-C-eEEEE--eC
Q psy14060        118 KYYA----L-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSP-D-FQIHT--FS  186 (283)
Q Consensus       118 n~~~----~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~-~-~~~~~--~~  186 (283)
                      +..+    . ..+.......+|.+...........|+.+.|.|.+.+. | .+.+.|++++..+.... . .....  .+
T Consensus       115 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g  194 (237)
T 3sob_L          115 YTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDS  194 (237)
T ss_dssp             SSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTC
T ss_pred             cCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCC
Confidence            7653    1 11221223556777665555555568899999999885 4 48999999999876421 0 00000  00


Q ss_pred             ---CEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        187 ---TKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       187 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                         ..+.|.|.....+|.|.|+|.+.|......
T Consensus       195 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          195 TYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             CEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence               134688999999999999999999875443

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.77  E-value=2e-17  Score=133.24  Aligned_cols=154  Identities=9%  Similarity=0.036  Sum_probs=108.2

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee------------------------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT------------------------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~------------------------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.|+|.|.+.+.+    .+ .|..                        ...++.+..  .....+|.|.+++.+|
T Consensus        19 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           19 LVKPSQTLSLTCSVTGDSVTSGYW-SWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             EECTTCCEEEEEEEEESCCSSCEE-EEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEEEcccccceEE-EEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            477789999999998843    22 2211                        123555543  2457789999999999


Q ss_pred             CeEEEEEEEecc----e-eeeeeccCCC--------------CCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEE
Q psy14060        109 DGYYAITERKYY----A-LSDLSEQKPA--------------KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWF  168 (283)
Q Consensus       109 ~G~Y~C~a~n~~----~-~~~~~~~~~~--------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~  168 (283)
                      +|.|+|.+.|..    . ......+.+.              .++.+...+....+.+|++++|.|.+.+.+.+ .+.|+
T Consensus        98 sG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~  177 (257)
T 3gkz_A           98 TATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWY  177 (257)
T ss_dssp             CEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEE
T ss_pred             CEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEE
Confidence            999999999861    1 1111122222              23566666677889999999999999987777 89999


Q ss_pred             eC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        169 RE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       169 k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |+  +..+.            ...++.........+|.|.++..+|+|.|+|.+.+...
T Consensus       178 k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  236 (257)
T 3gkz_A          178 QQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFP  236 (257)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence            84  22111            12455555566677899999999999999999987543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.77  E-value=5.1e-18  Score=133.26  Aligned_cols=161  Identities=9%  Similarity=0.033  Sum_probs=103.1

Q ss_pred             eeeecCcEEEEEEEccCc--cce-EEeec-------------------------CCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-RKITA-------------------------TETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-~~~~~-------------------------~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|.+  ... .|...                         ..++.+...  .+..+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (219)
T 1c1e_H           11 LKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNED   90 (219)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence            366788999999999864  221 33221                         234444432  346799999999999


Q ss_pred             CeEEEEEEEecce-----eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCC
Q psy14060        109 DGYYAITERKYYA-----LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSS  177 (283)
Q Consensus       109 ~G~Y~C~a~n~~~-----~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~  177 (283)
                      +|.|+|.+.|..+     ......+.+    ..+|.+........+..|+.+.|.|.+.| +|.| .+.|++++..+...
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~  170 (219)
T 1c1e_H           91 MATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  170 (219)
T ss_dssp             CEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceE
Confidence            9999999998751     111112222    22455554443445678999999999998 7988 99999998764211


Q ss_pred             CCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        178 PDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       178 ~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ........+.   .+.|.|.... .|.|.|+|.|.|..+.......
T Consensus       171 ~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          171 TFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             ECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEE
T ss_pred             ecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEe
Confidence            0000000111   2358885444 4669999999998877554443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.77  E-value=3.9e-18  Score=132.90  Aligned_cols=140  Identities=21%  Similarity=0.319  Sum_probs=107.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC----eEEEE-eCCEE--EEEEcCCCCCCCEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD----FQIHT-FSTKS--ILIMRQVFMEDSGVF  204 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~----~~~~~-~~~~~--~l~i~~~~~~d~G~Y  204 (283)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....    ..... .+...  .|.|.++..+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            478888888889999999999999999999999999999988764321    11111 11111  244456789999999


Q ss_pred             EEEEEeCCcee-EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEEecCC
Q psy14060        205 AVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       205 ~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~l~~~  280 (283)
                      +|.+.|..|.. .....+.|..         .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+...
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~  156 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAI---------LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK  156 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECE---------ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT
T ss_pred             EEEEECCCCceeecceEEEEEe---------ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC
Confidence            99999998765 3356666654         24555555667789999999999998 89999999999999998753

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.76  E-value=5.8e-17  Score=125.80  Aligned_cols=127  Identities=16%  Similarity=0.143  Sum_probs=94.7

Q ss_pred             cCCce-eecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        139 KIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       139 ~~~~~-~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      .+... .+.+|+.+.|.|.+.|.|.|.+.|+++.....   .......+....|.|.++..+|+|.|.|.|.|..+....
T Consensus         6 ~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A            6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL---NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             ESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC---SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc---cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            33443 44589999999999999999999998432111   112233445567999999999999999999999988877


Q ss_pred             EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC---CeeEEeeCCEEec
Q psy14060        218 SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP---LDVYWLKVSSLSD  278 (283)
Q Consensus       218 ~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~g~~l~  278 (283)
                      .+.|.|...         |..+...+. ..+.+|+.++|.|.+.|.++   ++|.|+++|+.|.
T Consensus        83 ~~~l~V~~~---------p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           83 GIQVEIYSF---------PKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             EEEEEEEBC---------CSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             EEEEEEEeC---------CCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            888888752         222222222 56889999999999998644   3799999999875

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.76  E-value=3.2e-18  Score=135.11  Aligned_cols=140  Identities=21%  Similarity=0.339  Sum_probs=108.6

Q ss_pred             CCeEEecC----CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeE-EEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        133 PPVFTKKI----QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       133 ~p~~~~~~----~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +|.|...+    ....+..|+.+.|.|.+.+.|.+.+.|++++..+.....+. .........|.|.++..+|+|.|+|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   94 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEE
Confidence            56665444    66788999999999999999999999999999886543221 12222334799999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEeeCCCeeEEee----CCEEec
Q psy14060        208 AENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPLDVYWLK----VSSLSD  278 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~g~~l~  278 (283)
                      +.|..+.......+.|.....      .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+.
T Consensus        95 ~~n~~~~~~~~~~l~V~~~~~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~  164 (231)
T 3ojm_B           95 VENEYGSINHTYHLDVVERSR------HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG  164 (231)
T ss_dssp             EEETTEEEEEEEEEEEECCCC------CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred             EecccCcccccEEEEEEcCCC------CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence            999999888888888875321      1333333 2456788999999999999999999999999    776653

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.76  E-value=6.6e-19  Score=133.80  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=95.8

Q ss_pred             eeecCcEEEEEEEcc--Cc--cceEEee----------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         60 IHTAKSQQVQKEKKG--DK--EIVRKIT----------------ATETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        60 v~~g~~v~l~C~~~g--~~--~i~~~~~----------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ..+|+++.|.|...+  .+  .+ .|..                ...++.+...   .+|.|.+++.+|+|.|+|.+.|.
T Consensus         8 ~~~G~~v~L~c~~~~~~~~~~~i-~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~---gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            8 GALGHGINLNIPNFQMTDDIDEV-RWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EETTSCEEECCTTCCCCTTEEEE-EEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEcCCcEEEcCCCCCcccccccE-EEEeCCceeEEEcCCCeecCCCCeEEECCC---CcEEEcccccccCEEEEEEEEeC
Confidence            456788999994332  22  33 2222                2334444322   24999999999999999999998


Q ss_pred             ceee---eeeccCCCC---CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEE
Q psy14060        120 YALS---DLSEQKPAK---PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM  193 (283)
Q Consensus       120 ~~~~---~~~~~~~~~---~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i  193 (283)
                      .+..   ....+.+..   +|.+.        ..+..+.|.|.+.|.|.|.+.|++++..+....+           +.|
T Consensus        84 ~g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i  144 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTM  144 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEE
T ss_pred             CCCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEE
Confidence            7743   222333322   23322        2244689999999999999999999988754332           334


Q ss_pred             cCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      ..+..+|.|.|+|.|.|..|...+.+.|.
T Consensus       145 ~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          145 SYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             EEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEccCCeEEEEEEEecCCCceeccccc
Confidence            45678999999999999999888776654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.76  E-value=1.9e-17  Score=113.49  Aligned_cols=94  Identities=21%  Similarity=0.348  Sum_probs=84.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .||.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+....  ++.+...+..++|.|.++..+|+|.|+|.|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            46778777888899999999999999999999999999999987543  5777777788899999999999999999999


Q ss_pred             eCCceeEEEEEEEEEe
Q psy14060        210 NRGGKAKCSANLVVEE  225 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~  225 (283)
                      |..|.....+.|.|..
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            9999999989988863

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=133.03  Aligned_cols=142  Identities=20%  Similarity=0.330  Sum_probs=109.0

Q ss_pred             CCCeEEec----CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        132 KPPVFTKK----IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       132 ~~p~~~~~----~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      .+|.|...    +....+..|+++.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++..+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35655543    34568899999999999999999999999999988653321 11222334579999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEeeCCCeeEEee----CCEEecC
Q psy14060        207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPLDVYWLK----VSSLSDV  279 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~g~~l~~  279 (283)
                      .+.|..+.......+.|.....      .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+..
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~------~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~  161 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSP------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP  161 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCC------CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCT
T ss_pred             EEeecCCceEEEEEEEEeccCC------CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCC
Confidence            9999999888888888875311      1333333 4566788999999999999999999999999    7776644

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.75  E-value=2e-17  Score=129.15  Aligned_cols=138  Identities=12%  Similarity=0.060  Sum_probs=102.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--ec----------C--CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--PI----------T--SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~----------~--~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...+....+..|+++.|.|.+.+.|.+.+.|+|++.  .+          .  ...++.+...+....|.|.++..+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            3445677889999999999999998888999998531  11          1  12466666666777899999999999


Q ss_pred             EEEEEEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-eeEEeeCCEEec
Q psy14060        202 GVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKVSSLSD  278 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~g~~l~  278 (283)
                      |.|+|.+.|..+.... ...|.|....       .+|.+...+....+..|+.+.|.|.+.| .|.+ .+.|++||+.+.
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCC-------CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            9999999998765332 2456665321       2677666544444558999999999988 5555 799999999886


Q ss_pred             CC
Q psy14060        279 VK  280 (283)
Q Consensus       279 ~~  280 (283)
                      ..
T Consensus       157 ~~  158 (213)
T 3d9a_L          157 NG  158 (213)
T ss_dssp             TT
T ss_pred             ce
Confidence            54

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=2.4e-17  Score=129.77  Aligned_cols=159  Identities=11%  Similarity=0.099  Sum_probs=106.6

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee---------------------------cCCCEEEEEc--CCEEEEEEccCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT---------------------------ATETTEMEHK--GKIQERVVDASE  105 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~---------------------------~~~~~~~~~~--~~~~~L~i~~~~  105 (283)
                      .+.+|++++|.|.+.+.+    .+ .|..                           ...++.+...  .....|.|.+++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           11 LVQSGGSLRLSCATSGFTFTDYYM-SWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCE-EEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eEcCCCEEEEEEEecCccCCCCcE-EEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            466788999999998754    22 2221                           1245555432  347799999999


Q ss_pred             CCCCeEEEEEEEecce--------eeeeeccC--CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEe
Q psy14060        106 LDDDGYYAITERKYYA--------LSDLSEQK--PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFP  173 (283)
Q Consensus       106 ~~D~G~Y~C~a~n~~~--------~~~~~~~~--~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~  173 (283)
                      .+|+|.|.|.+.+..+        ......+.  ...+|.+........+..|+.+.|.|.+.|. |.| .+.|++++..
T Consensus        90 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  169 (222)
T 1q9r_B           90 AEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  169 (222)
T ss_dssp             GGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeE
Confidence            9999999999988542        11111222  1235655544433346689999999999986 888 9999999876


Q ss_pred             cCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        174 ITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       174 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      +... .........    .+.|.|..+..+| |.|+|.|.|..+.......
T Consensus       170 ~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          170 SGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             TTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             cceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            5321 111111111    2368999999899 9999999999887654443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.75  E-value=5.2e-18  Score=131.00  Aligned_cols=138  Identities=15%  Similarity=0.162  Sum_probs=101.5

Q ss_pred             cCCceeecCCCcEEEEEE-EeeecC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        139 KIQPCRAFEQDQARFEVE-FDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~-~~g~p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      .+....+.+|+.+.|.|. +.+.|. +.+.|++++..+................|.|.++..+|+|.|+|.+.|..+...
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            446678999999999999 888898 999999998776432211122222334699999999999999999999776544


Q ss_pred             EE---EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        217 CS---ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       217 ~~---~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      ..   ..+.+....   .....+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~  156 (201)
T 3s97_C           94 VFSKFIPLIPIPER---TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS  156 (201)
T ss_dssp             EECCCEEEEEECCS---SCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT
T ss_pred             hhhcccceeecccc---ccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC
Confidence            32   333332110   0111356666666678899999999999999999999999999987653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=1.1e-17  Score=132.12  Aligned_cols=152  Identities=14%  Similarity=0.190  Sum_probs=104.5

Q ss_pred             eeeecCcEEEEEEEccCcc-ce-EEeecCCC---------------E--EEE----------EcCCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV-RKITATET---------------T--EME----------HKGKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~~~~~---------------~--~~~----------~~~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|+.+.|.|.+.+.+. .. .|......               +  ++.          .. ....|.|.+++.+|+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~   89 (231)
T 2pet_A           11 EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-SQGRLVLAEAQVGDE   89 (231)
T ss_dssp             EEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-TTCCEEESSCCGGGC
T ss_pred             EEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-CCceEEEcccCcccC
Confidence            4677889999999998884 32 44422111               1  111          11 113399999999999


Q ss_pred             eEEEEEEEecc-ee-eeeeccCC---CCCCeEEecCCceeecCCCcE-EEEEEE-eeecCCEEEEEeCCEecCCCC----
Q psy14060        110 GYYAITERKYY-AL-SDLSEQKP---AKPPVFTKKIQPCRAFEQDQA-RFEVEF-DGDPLPTIKWFREDFPITSSP----  178 (283)
Q Consensus       110 G~Y~C~a~n~~-~~-~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v-~l~C~~-~g~p~~~~~W~k~~~~~~~~~----  178 (283)
                      |.|+|.+.+.. +. .....+.+   ...|.+...+....+..|+.+ .|.|.+ .+.|.|.+.|++++..+....    
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~  169 (231)
T 2pet_A           90 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNP  169 (231)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCS
T ss_pred             ceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccccccc
Confidence            99999999886 42 22223333   234666666666677889887 999999 889999999999999887654    


Q ss_pred             CeEEEEeC----C-----EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        179 DFQIHTFS----T-----KSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       179 ~~~~~~~~----~-----~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ++.+....    .     .+.|.|......|.|.|+|.|.|.
T Consensus       170 ~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          170 EGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            44433211    1     156888766666799999999994

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.75  E-value=1.5e-17  Score=129.78  Aligned_cols=158  Identities=10%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee------------------------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT------------------------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~------------------------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|.+    .+ .|..                        ...++.+..  .++..+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           11 LVKPSQTLSLTCSVTGDSITSDYW-SWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             EECTTSCEEEEEEEESSCGGGSCE-EEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEEecccCCCCcE-EEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence            467788999999999864    23 2221                        134565543  2346799999999999


Q ss_pred             CeEEEEEEEecce--eeeeeccC--CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCeEE
Q psy14060        109 DGYYAITERKYYA--LSDLSEQK--PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDFQI  182 (283)
Q Consensus       109 ~G~Y~C~a~n~~~--~~~~~~~~--~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~~~  182 (283)
                      +|.|.|.+.|...  ......+.  ...+|.+........+..|+.+.|.|.+.|. |.| .+.|++++..+.......+
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~  169 (210)
T 3d9a_H           90 TATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV  169 (210)
T ss_dssp             CEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE
T ss_pred             CEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCc
Confidence            9999999988532  11111121  2235655544434456789999999999987 888 9999999875421111011


Q ss_pred             EEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        183 HTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       183 ~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      ...+   ..+.|.|.....+| |.|+|.|.|..+.....
T Consensus       170 ~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          170 LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            1111   13468898888867 99999999998875543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.75  E-value=4e-17  Score=127.50  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=104.3

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC---Ee-----------cCCCCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED---FP-----------ITSSPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|||..   ..           .....++.+.......+|.|.++..+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            34555677788999999999999999888999999832   10           01134666666667778999999999


Q ss_pred             CCEEEEEEEEeCCce-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEE
Q psy14060        200 DSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSL  276 (283)
Q Consensus       200 d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~  276 (283)
                      |+|.|+|.+.|..+. ......|.|....       .+|.+...+....+..|+.+.|.|.+.|.+++  .+.|++||+.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~  154 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRAD-------AKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE  154 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccC-------CCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc
Confidence            999999999887543 2233456663211       46777776666666788899999999987653  8999999998


Q ss_pred             ecC
Q psy14060        277 SDV  279 (283)
Q Consensus       277 l~~  279 (283)
                      +..
T Consensus       155 l~~  157 (213)
T 3r06_A          155 KRD  157 (213)
T ss_dssp             ECT
T ss_pred             cCC
Confidence            864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=128.77  Aligned_cols=135  Identities=9%  Similarity=0.002  Sum_probs=101.3

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+.. .+..|++++|.|.+.+ +.+.+.|+|++..+..... ..........|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            36777777666 8899999999999988 7889999999987643110 0011134568999999999999999999999


Q ss_pred             Cce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        212 GGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       212 ~g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      .|.  .+..+.|.|....       .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+++|..+.
T Consensus        81 ~g~~~~s~~~~l~V~~~~-------~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~  140 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAY-------SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHP  140 (196)
T ss_dssp             TEEBCCCCCEEEEEECSS-------CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCG
T ss_pred             CcccCCCccEEEEecCCC-------CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCccc
Confidence            873  3445677776421       35666655443 78999999999999884 46899999998653

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.74  E-value=6e-18  Score=130.67  Aligned_cols=135  Identities=9%  Similarity=0.005  Sum_probs=90.4

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+.. .+.+|++++|.|.+.+.|. .+.|+|++..+..... ..........|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            46777776664 7889999999999988654 9999999987643110 0001234568999999999999999999998


Q ss_pred             Ccee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        212 GGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       212 ~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      .+..  +..+.|.|....       .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+.
T Consensus        81 ~g~~~~s~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~  140 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFY-------NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKL  140 (196)
T ss_dssp             TEECBCCCCEEEEEECSS-------CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CC
T ss_pred             CCcCCcCccEEEEecCCC-------CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccc
Confidence            7643  344667776521       245655443 35788999999999999988 8999999998763

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=6.9e-18  Score=133.77  Aligned_cols=157  Identities=9%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             eeeecCcEEEEEEEccCc-cc--eEEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EI--VRKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i--~~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      .+.+|++++|.|.+.|.+ ..  ..|...                    ..++.....+....|.|.+++.+|+|.|+|.
T Consensus        30 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  109 (234)
T 2j6e_L           30 SGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCA  109 (234)
T ss_dssp             CBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEE
T ss_pred             EeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEE
Confidence            366788999999998754 21  133221                    2456665556678999999999999999999


Q ss_pred             EEecce----eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe-EEEE
Q psy14060        116 ERKYYA----LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF-QIHT  184 (283)
Q Consensus       116 a~n~~~----~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~-~~~~  184 (283)
                      +.|..+    ......+.+    ..+|.+...........|+.++|.|.+.|. |. +.++|+|++..+...... ....
T Consensus       110 ~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  189 (234)
T 2j6e_L          110 TWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSK  189 (234)
T ss_dssp             EEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCC
T ss_pred             EEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceE
Confidence            998865    111223333    235555443333334468899999999885 44 489999999987543110 0000


Q ss_pred             -e----CCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        185 -F----STKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       185 -~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                       .    ...+.|.|..+..+|.|.|+|.|.|.....
T Consensus       190 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          190 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             CTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence             0    123468899999999999999999987653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.74  E-value=3.4e-17  Score=127.70  Aligned_cols=134  Identities=10%  Similarity=0.045  Sum_probs=99.4

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +....+..|+.+.|.|.+.+.|.+.+.|||++  ..+            ....++.+...+....|.|.++..+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            66778999999999999999888899999842  211            1124566665666778999999999999999


Q ss_pred             EEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecCC
Q psy14060        206 VIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDVK  280 (283)
Q Consensus       206 C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~~  280 (283)
                      |.+.|..+.... ...|.|....       .+|.+...+....+..|+.++|.|.+.|. |.+ .|.|++||+.+...
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~  157 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRAD-------AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDG  157 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTT
T ss_pred             EEEEcCCCceeCCCEEEEEcCCC-------cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCC
Confidence            999998764322 2456665321       25666665444445589999999999984 444 89999999987643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.74  E-value=5.3e-17  Score=130.70  Aligned_cols=166  Identities=10%  Similarity=0.082  Sum_probs=109.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee---------------------cCCCEEE--EEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT---------------------ATETTEM--EHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~---------------------~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|+.++|.|.+.+.+... .|..                     ...++.+  .......+|.|.+++.+|+|.|+|
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C   93 (256)
T 3tf7_C           14 TVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFC   93 (256)
T ss_dssp             EEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEE
T ss_pred             EecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEE
Confidence            366788999999998877322 2221                     1234444  233567889999999999999999


Q ss_pred             EEEecce-----ee---eeeccC-----------------CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060        115 TERKYYA-----LS---DLSEQK-----------------PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR  169 (283)
Q Consensus       115 ~a~n~~~-----~~---~~~~~~-----------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k  169 (283)
                      .+.|..+     ..   .+....                 ...+|.+...+....+.+|++++|.|.+.+. .+.+.|||
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k  172 (256)
T 3tf7_C           94 AVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYR  172 (256)
T ss_dssp             EEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEE
T ss_pred             EEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEE
Confidence            9988643     11   111111                 2236677777788888899999999999885 78999998


Q ss_pred             CCE--e---cC------------CCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE--EEEEEEEe
Q psy14060        170 EDF--P---IT------------SSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC--SANLVVEE  225 (283)
Q Consensus       170 ~~~--~---~~------------~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~  225 (283)
                      ...  .   +.            ...++.+.. .....+|.|.++..+|+|.|+|.+.|..|...-  -..|.|..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~  248 (256)
T 3tf7_C          173 QDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLE  248 (256)
T ss_dssp             ECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence            421  1   00            012233222 223457999999999999999999998765322  13455553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.74  E-value=8.1e-19  Score=147.66  Aligned_cols=154  Identities=13%  Similarity=0.089  Sum_probs=118.5

Q ss_pred             CCeEEEEEEEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCC
Q psy14060        108 DDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST  187 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~  187 (283)
                      |.|.|+|.+.+...   ...+..-.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ......
T Consensus       136 ~~~~~~C~~~~~l~---~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~  210 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA---HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLP  210 (347)
T ss_dssp             GGGCCCCSSSSCSS---CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSS
T ss_pred             cccCCCCCCChHHh---cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc--cceecc
Confidence            57899997766211   1122344588888888888999999999999999999999999999876432111  001234


Q ss_pred             EEEEEEcCCCCCCCE-EEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC
Q psy14060        188 KSILIMRQVFMEDSG-VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL  266 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~  266 (283)
                      ..+|.|.++..+|+| .|+|.+.|..|.....+.+.|..          +|.+ .   ...+..|+.+.|.|.+.|.|.|
T Consensus       211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~----------~P~i-~---~~~~~~g~~v~l~C~~~g~P~p  276 (347)
T 2ifg_A          211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF----------PASV-Q---LHTAVEMHHWCIPFSVDGQPAP  276 (347)
T ss_dssp             EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE----------EEEE-E---ECCCEESSSEEEEEEEEEESCC
T ss_pred             cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC----------CCee-e---eccCccCceEEEEEEeeecCCC
Confidence            567999999999999 99999999999887777777764          4554 1   1224578999999999999999


Q ss_pred             eeEEeeCCEEecCC
Q psy14060        267 DVYWLKVSSLSDVK  280 (283)
Q Consensus       267 ~v~W~~~g~~l~~~  280 (283)
                      .|.|+++|+.+...
T Consensus       277 ~i~W~~~g~~l~~~  290 (347)
T 2ifg_A          277 SLRWLFNGSVLNET  290 (347)
T ss_dssp             EEEEEETTEECCCC
T ss_pred             cEEEEeCCEECCCC
Confidence            99999999998743

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.74  E-value=5.3e-17  Score=133.24  Aligned_cols=154  Identities=9%  Similarity=0.099  Sum_probs=106.3

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEeec-------------------------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKITA-------------------------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~~-------------------------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+    .+ .|...                         ..++.+..  .+...+|.|.+++.+
T Consensus        33 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  111 (291)
T 2gki_A           33 LVKPGASVKMSCKASGYTFTSYVM-HWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSE  111 (291)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCE-EEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGG
T ss_pred             EecCCCCEEEEEeccCCcccccEE-EEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHH
Confidence            466788999999998764    23 22211                         13444432  235789999999999


Q ss_pred             CCeEEEEEEEecc----e--eeeeeccCCCC----------------CCeEEecCCceeecCCCcEEEEEEEeeecCC--
Q psy14060        108 DDGYYAITERKYY----A--LSDLSEQKPAK----------------PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP--  163 (283)
Q Consensus       108 D~G~Y~C~a~n~~----~--~~~~~~~~~~~----------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--  163 (283)
                      |+|.|.|.+.|..    .  ......+.+..                ++.+...+....+.+|++++|.|.+.+.+.+  
T Consensus       112 DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  191 (291)
T 2gki_A          112 DSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSR  191 (291)
T ss_dssp             GCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETT
T ss_pred             HCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcccccc
Confidence            9999999998874    1  11111222222                3344445566789999999999999887655  


Q ss_pred             ----EEEEEeCC--Ee---cC---------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        164 ----TIKWFRED--FP---IT---------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       164 ----~~~W~k~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                          .+.|||+.  ..   +.         ...++.+.......+|.|.++..+|+|.|+|.+.|...
T Consensus       192 ~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  259 (291)
T 2gki_A          192 TRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHM  259 (291)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCc
Confidence                89999963  21   10         13456555556677899999999999999999998643

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.74  E-value=4.7e-17  Score=126.06  Aligned_cols=128  Identities=11%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC-----CEEEEEeC-CEecCCCCCeEEEEe---CCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL-----PTIKWFRE-DFPITSSPDFQIHTF---STKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~-----~~~~W~k~-~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+....+..|+.+.|.|.+.+.|.     +.+.|+|+ +.......++.+...   ....+|.|.++..+|+|.|+|.+.
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   87 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI   87 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEE
Confidence            344578899999999999998775     78999994 443333334443322   144689999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      |..+.....+.|.|....       ..|.+..    ..+..|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus        88 ~~~~~~~~~~~l~V~~~~-------~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           88 CGAAWDYKYLTVKVKASY-------MRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             ETTEEEEEEEEEEEEBCC-------CCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             eCCCcceEEEEEEecCCC-------CcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence            999888778888887521       1233321    24578999999999999999999999988654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.73  E-value=1.3e-17  Score=133.95  Aligned_cols=157  Identities=11%  Similarity=0.061  Sum_probs=106.1

Q ss_pred             eeeecCcEEEEEEEccCc-----cce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-----EIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-----~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.|.+.+.+     ... .|...                    ..++.+...+....|.|.+++.+|+|.|
T Consensus        45 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  124 (252)
T 3bkj_L           45 PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVY  124 (252)
T ss_dssp             EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEE
Confidence            366788999999998876     122 33221                    2466666566778999999999999999


Q ss_pred             EEEEEeccee--ee--eeccC-CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCeE--EE
Q psy14060        113 AITERKYYAL--SD--LSEQK-PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDFQ--IH  183 (283)
Q Consensus       113 ~C~a~n~~~~--~~--~~~~~-~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~~--~~  183 (283)
                      +|.+.|..+.  ..  ...+. ...+|.+........+..|+.++|.|.+.+. |.+ .+.|+|++..+.......  ..
T Consensus       125 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  204 (252)
T 3bkj_L          125 YCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  204 (252)
T ss_dssp             EEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCC
T ss_pred             EEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcc
Confidence            9999887541  11  11222 2235666554443344578899999999985 443 799999998875430000  00


Q ss_pred             E--eC---CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        184 T--FS---TKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       184 ~--~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      .  .+   ..+.|.|..+..+|.|.|+|.+.|.....
T Consensus       205 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          205 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            0  01   12468999999999999999999976543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.73  E-value=1.5e-16  Score=128.95  Aligned_cols=153  Identities=11%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             eeeecCcEEEEEEEccCcc-----ce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-----IV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-----i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.|.+.+.+.     .. .|..                    ...++.+...+....|.|.+++.+|+|.|
T Consensus        26 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y  105 (268)
T 1x9q_A           26 PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVY  105 (268)
T ss_dssp             CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEE
Confidence            3667889999999987651     11 2221                    13466666556678999999999999999


Q ss_pred             EEEEEecce--eeeeeccCCCCC---------C--------------eEEecCCceeecCCCcEEEEEEEeeec--CCEE
Q psy14060        113 AITERKYYA--LSDLSEQKPAKP---------P--------------VFTKKIQPCRAFEQDQARFEVEFDGDP--LPTI  165 (283)
Q Consensus       113 ~C~a~n~~~--~~~~~~~~~~~~---------p--------------~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~  165 (283)
                      .|.+.|..+  ......+.+..+         |              ..+..+....+.+|++++|.|.+.+.+  .+.+
T Consensus       106 ~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  185 (268)
T 1x9q_A          106 FCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWM  185 (268)
T ss_dssp             EEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEE
T ss_pred             EEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEE
Confidence            999988743  111122333221         1              123334567889999999999998865  3899


Q ss_pred             EEEeCC--Eec-------------------CCCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        166 KWFRED--FPI-------------------TSSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       166 ~W~k~~--~~~-------------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .|||+.  ..+                   ....++.+...  .....|.|.++..+|+|.|+|.+.+.
T Consensus       186 ~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          186 NWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            999852  211                   11235555443  23567999999999999999999874

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.73  E-value=2.7e-17  Score=127.87  Aligned_cols=124  Identities=16%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+|++..+....          ..|.|.++..+|+|.|+|.+.|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence            356677777778899999999999999988775 99999999886542          4699999999999999999987


Q ss_pred             CCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCCeeEEeeCCEEec
Q psy14060        211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLKVSSLSD  278 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~l~  278 (283)
                      .  .....+.|.|..          +|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|++||+.+.
T Consensus        76 ~--~~s~~~~l~V~~----------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~  131 (204)
T 3sgj_C           76 S--TLSDPVQLEVHI----------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK  131 (204)
T ss_dssp             S--BCCCCEEEEEEC----------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             C--cccccEEEEEec----------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEee
Confidence            4  334456777764          455554443 678899999999999665 557899999999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.73  E-value=7.9e-17  Score=126.19  Aligned_cols=138  Identities=13%  Similarity=0.111  Sum_probs=100.1

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCC---E-------------ecC--CCCCeEEEEeCCEEEEEEcC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED---F-------------PIT--SSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~---~-------------~~~--~~~~~~~~~~~~~~~l~i~~  195 (283)
                      .+...+ ...+.+|+++.|.|.+.+. |.+.+.|||..   .             ...  ...++.+.......+|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344445 6789999999999999998 88999999832   1             000  11356555566677899999


Q ss_pred             CCCCCCEEEEEEEEeCCc-----eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-ee
Q psy14060        196 VFMEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DV  268 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v  268 (283)
                      +..+|+|.|.|.+.|..|     .......|.|....      ..+|.+...+....+..|+.+.|.|.+.| .|.+ .+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v  155 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP------KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV  155 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC------CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence            999999999999998776     22334567776421      13566665555555567899999999998 5666 89


Q ss_pred             EEeeCCEEecC
Q psy14060        269 YWLKVSSLSDV  279 (283)
Q Consensus       269 ~W~~~g~~l~~  279 (283)
                      .|++||+.+..
T Consensus       156 ~W~k~g~~l~~  166 (218)
T 3s96_B          156 AWKANGTPITQ  166 (218)
T ss_dssp             EEEETTEEC--
T ss_pred             EEEECCEECcC
Confidence            99999998864

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.73  E-value=6.9e-17  Score=126.90  Aligned_cols=159  Identities=11%  Similarity=0.098  Sum_probs=103.5

Q ss_pred             eeeecCcEEEEEEEccCc--cce-EEeec---------------------------CCCEEEEE--cCCEEEEEEccCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-RKITA---------------------------TETTEMEH--KGKIQERVVDASEL  106 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-~~~~~---------------------------~~~~~~~~--~~~~~~L~i~~~~~  106 (283)
                      .+.+|++++|.|.+.+.+  ... .|...                           ..++.+..  ..+...|.|.+++.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   90 (220)
T 1pz5_B           11 LVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRA   90 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCH
Confidence            366788999999998754  111 22110                           24555543  23567999999999


Q ss_pred             CCCeEEEEEEEecce------eeeeeccC--CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecC-
Q psy14060        107 DDDGYYAITERKYYA------LSDLSEQK--PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPIT-  175 (283)
Q Consensus       107 ~D~G~Y~C~a~n~~~------~~~~~~~~--~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~-  175 (283)
                      +|+|.|.|.+.+..+      ......+.  ...+|.+........+..|+.+.|.|.+.|. |.| .+.|++++.... 
T Consensus        91 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~  170 (220)
T 1pz5_B           91 EDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGV  170 (220)
T ss_dssp             GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTE
T ss_pred             HHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccce
Confidence            999999999998642      11111222  2235655544434456789999999999987 888 999999876311 


Q ss_pred             -CCCCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        176 -SSPDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       176 -~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                       ....... ......+.|.|.....+| |.|+|.|.|..+.....
T Consensus       171 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          171 RTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             EECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence             0011100 000013468898888766 99999999998865543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.73  E-value=1.7e-16  Score=128.36  Aligned_cols=153  Identities=10%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             eeeecCcEEEEEEEccCc------cce-EEee--------------------cCCCEEEEEcCCEEEEEEccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGDK------EIV-RKIT--------------------ATETTEMEHKGKIQERVVDASELDDDGY  111 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~------~i~-~~~~--------------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+.+|++++|.|.+.+.+      ... .|..                    ...++.+...+....|.|.+++.+|+|.
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~   95 (264)
T 2gjj_A           16 PVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAV   95 (264)
T ss_dssp             EEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEE
Confidence            467788999999998875      111 2221                    1346666555667899999999999999


Q ss_pred             EEEEEEeccee--eeeeccCCCCC------------------C-eEEecCCceeecCCCcEEEEEEEeeecC--CEEEEE
Q psy14060        112 YAITERKYYAL--SDLSEQKPAKP------------------P-VFTKKIQPCRAFEQDQARFEVEFDGDPL--PTIKWF  168 (283)
Q Consensus       112 Y~C~a~n~~~~--~~~~~~~~~~~------------------p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~  168 (283)
                      |.|.+.+..+.  .....+.+..+                  | ..+..+....+.+|++++|.|.+.+.+.  +.+.||
T Consensus        96 Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  175 (264)
T 2gjj_A           96 YYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWV  175 (264)
T ss_dssp             EEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             EEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEE
Confidence            99999886431  11112222222                  1 2223334457899999999999988753  799999


Q ss_pred             eCC--Ee---cC----C----------CCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        169 RED--FP---IT----S----------SPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       169 k~~--~~---~~----~----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      |+.  ..   +.    .          ..++.+...  .....|.|.++..+|+|.|+|.+.|.
T Consensus       176 r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          176 KKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            963  11   10    0          234444332  34678999999999999999999985

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.73  E-value=2.2e-17  Score=127.83  Aligned_cols=156  Identities=11%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             eeeecCcEEEEEEEcc----Cccce-EEeecC------------------CCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKG----DKEIV-RKITAT------------------ETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g----~~~i~-~~~~~~------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      .+.+|+.+.|.|.+.+    .+.+. .|....                  .+..+. ..+..+|.|.+++.+|+|.|+|.
T Consensus         5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEEEE
Confidence            3667889999999964    23222 222211                  122221 12346899999999999999999


Q ss_pred             EEeccee------eeeeccCCCC---CCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEe
Q psy14060        116 ERKYYAL------SDLSEQKPAK---PPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTF  185 (283)
Q Consensus       116 a~n~~~~------~~~~~~~~~~---~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~  185 (283)
                      +.|..+.      .....+.+..   .|.+...    ....|+.+.|.|.+. |.|.|.+.|++++..+.... ......
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~  158 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQD  158 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE-EEEEEC
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc-ceEEec
Confidence            9996542      1222333322   2433321    124588999999995 88999999999998876432 222222


Q ss_pred             C--CE-EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        186 S--TK-SILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       186 ~--~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      .  .. ....+..+..+|.|.|+|.|.|..+.....+.
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            1  21 11122344568999999999999988766554

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.72  E-value=5.1e-17  Score=126.72  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=98.6

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      ...+.+|+.+.|.|.+.  |.+.+.|+|+  +..+.            ...++.+.......+|.|.++..+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            67889999999999998  8889999994  22211            22456666666778899999999999999999


Q ss_pred             EEeCCc--eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCeeEEeeCCEEecC
Q psy14060        208 AENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWLKVSSLSDV  279 (283)
Q Consensus       208 a~n~~g--~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g~~l~~  279 (283)
                      +.|..+  .......|.|....      ..+|.+...+....+..|+.+.|.|.+.|.+  .+.+.|++||+.+..
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQP------KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSC------CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EecCCCceeECCCceEEEeCCC------CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            999887  33344566666311      1367777666555556899999999999864  468999999998854

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.72  E-value=7.7e-18  Score=137.33  Aligned_cols=207  Identities=11%  Similarity=-0.002  Sum_probs=93.6

Q ss_pred             eeeecCcEEEEEEEccCc-cceEEeecCCCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCe
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVRKITATETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPV  135 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~  135 (283)
                      .|.+|++++|.|.+.-.. ....+.....+... ........|.|.+++..  |.|.|.+..... ......+.+..+|.
T Consensus        10 ~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~   87 (291)
T 1mq8_A           10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPE   87 (291)
T ss_dssp             EECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCS
T ss_pred             EEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCC
Confidence            377789999999996332 32222211111122 12224557889988743  569999864422 22333344444443


Q ss_pred             EE-ecCCceeecCCCcEEEEEEEeee-cCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        136 FT-KKIQPCRAFEQDQARFEVEFDGD-PLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       136 ~~-~~~~~~~~~~g~~v~l~C~~~g~-p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      -. ..+....+..|+.++|.|.+.+. |..  .|+|||++..+.....   .......++.+......+.+.|+|.|.|.
T Consensus        88 ~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~  164 (291)
T 1mq8_A           88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELD  164 (291)
T ss_dssp             CCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEE
T ss_pred             CCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEec
Confidence            22 22333457889999999999875 443  6999999977643210   00112235666666666667999999987


Q ss_pred             Cce--------eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC---eeEEeeCCEEecC
Q psy14060        212 GGK--------AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL---DVYWLKVSSLSDV  279 (283)
Q Consensus       212 ~g~--------~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~l~~  279 (283)
                      .+.        .+....|.|...         |+..........+.+|+.++|.|.+.|.|++   .++|++||+.+..
T Consensus       165 l~~~g~~l~~~~s~~~~L~V~~~---------P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          165 LRPQGLELFENTSAPYQLQTFVL---------PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             CGGGTSCEEEECCCCEECBC-----------------------------------------------------------
T ss_pred             CCccCCccccccccceEEEEEec---------CCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCc
Confidence            552        122345666542         2111111112367899999999999997655   5999999998863

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.72  E-value=5.4e-17  Score=122.96  Aligned_cols=125  Identities=16%  Similarity=0.134  Sum_probs=98.8

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+|++..+..          ....|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEee
Confidence            3467777777777899999999999999988766 889999987753          23369999999999999999998


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEec
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSD  278 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~  278 (283)
                      |..+  .....|.|..          ++.+... ....+.+|+.+.|.|.+.+.|++ .+.|+++|..+.
T Consensus        75 n~~~--s~~~~l~V~~----------~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~  131 (175)
T 1fnl_A           75 LSTL--SDPVQLEVHI----------GWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK  131 (175)
T ss_dssp             SSCC--CCCEEEEEEC----------SSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             CCcc--cccEEEEEeC----------CCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc
Confidence            8554  3345666663          3444333 44678899999999999887665 999999999874

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.72  E-value=4.2e-17  Score=127.76  Aligned_cols=164  Identities=10%  Similarity=-0.033  Sum_probs=105.7

Q ss_pred             eeecCcEEEEEEEccCcc--ce--EEeecCCCEEEE-----------------------------EcCCEEEEEEccCCC
Q psy14060         60 IHTAKSQQVQKEKKGDKE--IV--RKITATETTEME-----------------------------HKGKIQERVVDASEL  106 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~--i~--~~~~~~~~~~~~-----------------------------~~~~~~~L~i~~~~~  106 (283)
                      +.+|++++|.|.+.+.+.  +.  .|..........                             ......+|.|.+++.
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   92 (225)
T 4fmk_A           13 GRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRV   92 (225)
T ss_dssp             EETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCG
T ss_pred             EecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCH
Confidence            557889999999988762  21  444333222110                             112345799999999


Q ss_pred             CCCeEEEEEEEecceee--eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEE
Q psy14060        107 DDDGYYAITERKYYALS--DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIH  183 (283)
Q Consensus       107 ~D~G~Y~C~a~n~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~  183 (283)
                      +|+|.|+|.+.|..+..  ....+.+..+|.....+.......++.+.+.|.+. +.|.+.+.|++++..+.........
T Consensus        93 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~  172 (225)
T 4fmk_A           93 EDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGI  172 (225)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECS
T ss_pred             HHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEe
Confidence            99999999998876532  22223334455555555555666777777777765 5678899999987654321111100


Q ss_pred             EeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        184 TFST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       184 ~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      ..+.   .+.|.|..+..+|.|.|+|.|.|..+.....+.+.+
T Consensus       173 ~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          173 QAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             STTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            0111   246999999999999999999999877654444443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.72  E-value=2e-18  Score=134.26  Aligned_cols=147  Identities=12%  Similarity=0.087  Sum_probs=94.1

Q ss_pred             eeecCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccC----------
Q psy14060         60 IHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQK----------  129 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~----------  129 (283)
                      +.+|+.++|.|.+ ..+.+ .|...+...... ......|.|.+++.+|+|.|+|.+.+.........+.          
T Consensus        15 ~~~G~~v~L~C~~-p~~~i-~W~k~g~~l~~~-~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~~   91 (204)
T 1sy6_A           15 YQEDGSVLLTCDA-EAKNI-TWFKDGKMIGFL-TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD   91 (204)
T ss_dssp             CCSSSEEEEEECS-CSSEE-EEEETTEEEEEE-ESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC---------
T ss_pred             ecCCCeEEEEEcC-CCCEE-EEEECCEECCCC-CCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEecccccccc
Confidence            4568899999998 44444 455444333221 1234679999999999999999965533211111000          


Q ss_pred             -------------------CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEEEeCCEE
Q psy14060        130 -------------------PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKS  189 (283)
Q Consensus       130 -------------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~  189 (283)
                                         ...++.+. ........+|+++.|.|.  +.|.|.+.|+|++..+.... ...+...  ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~  166 (204)
T 1sy6_A           92 AAKKDDAKKDDAKKDGSDGNEEMGGIT-QTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSD--ED  166 (204)
T ss_dssp             ----------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEE--TT
T ss_pred             cccccccccccccccccccccccccee-cCCceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecC--CC
Confidence                               00012121 112222338999999998  77889999999999876431 1112212  23


Q ss_pred             EEEEcCC-CCCCCEEEEEEEEeCCce
Q psy14060        190 ILIMRQV-FMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       190 ~l~i~~~-~~~d~G~Y~C~a~n~~g~  214 (283)
                      .|.|.++ ..+|+|.|+|.|.|..|.
T Consensus       167 ~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          167 HLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             EEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             EEEEeeCCccccCEEEEEEeccCCCC
Confidence            6999999 999999999999999986

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.72  E-value=1.1e-17  Score=129.96  Aligned_cols=134  Identities=16%  Similarity=0.301  Sum_probs=103.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEec------------CCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI------------TSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+.  .  ..|.|.++..+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--P--TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--T--TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee--c--cEEEEeeCCHHH
Confidence            455666677788999999999999999899999999986542            112233332  2  569999999999


Q ss_pred             CEEEEEEEEeCCce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEEe
Q psy14060        201 SGVFAVIAENRGGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSLS  277 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~l  277 (283)
                      +|.|+|.+.|..|.  ......|.|..          +|.+........+..|+.+.|.|.+ .+.|.|.+.|+++|..+
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~  149 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLV----------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM  149 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEB----------CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCC
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEec----------CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeC
Confidence            99999999998653  34456666664          4544444445678999999999997 89999999999999887


Q ss_pred             cCC
Q psy14060        278 DVK  280 (283)
Q Consensus       278 ~~~  280 (283)
                      ...
T Consensus       150 ~~~  152 (209)
T 1nbq_A          150 PTN  152 (209)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.72  E-value=4.1e-17  Score=130.56  Aligned_cols=164  Identities=10%  Similarity=0.078  Sum_probs=100.5

Q ss_pred             eeeecCcEEEEEEEccCccc------eEEeecCCC----EEE-E-------------------EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI------VRKITATET----TEM-E-------------------HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i------~~~~~~~~~----~~~-~-------------------~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.++|.|.+.|.|..      ..|......    ..+ .                   ...+..+|.|.+++.+|
T Consensus        14 ~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   93 (248)
T 3pv7_A           14 ITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE   93 (248)
T ss_dssp             EEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHH
Confidence            36678899999999887621      133322100    000 0                   01123459999999999


Q ss_pred             CeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCC----C--
Q psy14060        109 DGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSP----D--  179 (283)
Q Consensus       109 ~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~----~--  179 (283)
                      +|.|+|.+.+..+. .....+.+..+|.+...+. .....|+.+.|.|.+.| +|.+ .+.|++++..+....    .  
T Consensus        94 ~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~  172 (248)
T 3pv7_A           94 AGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVI  172 (248)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEE
T ss_pred             CeEEEEEEEeCCccceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccccccee
Confidence            99999999988763 3344455556777665544 33456778889999998 7888 999999986443210    0  


Q ss_pred             -eEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCcee--EEEEEEEE
Q psy14060        180 -FQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGKA--KCSANLVV  223 (283)
Q Consensus       180 -~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  223 (283)
                       .......     ....|.|.....+|.|.|+|.+.|..+..  ...+.|.|
T Consensus       173 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          173 TGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence             0111111     12468888899999999999999998764  44455555

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.72  E-value=3.4e-17  Score=125.16  Aligned_cols=129  Identities=9%  Similarity=-0.001  Sum_probs=98.3

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ...+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|++...        .  .....|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~--~~~~~L~i~~v~~~D~G~Y~C~a~   72 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------Y--QDQAVLFIPAMKRSLAGRYRCSYQ   72 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------E--ESSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------c--CcccEEEECcCChhhCceEEEEEE
Confidence            3457777776664 7899999999999988 88899999998651        0  123469999999999999999999


Q ss_pred             eCCcee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        210 NRGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       210 n~~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      |..|..  +..+.|.|....       .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+..
T Consensus        73 n~~g~~~~s~~~~l~V~~~~-------~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~  135 (184)
T 2gi7_A           73 NGSLWSLPSDQLELVATGVF-------AKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPY  135 (184)
T ss_dssp             ETTEEBCCCCCEEEEEESSS-------CCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTS
T ss_pred             cCCCccCCCCCEEEEecCcC-------CCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcc
Confidence            987642  334666665421       356666555 4567899999999998764 469999999987653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.72  E-value=3.7e-16  Score=107.62  Aligned_cols=98  Identities=20%  Similarity=0.327  Sum_probs=88.8

Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+........|.|.++..+|+|.|+|.
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence            34556888888888899999999999999999999999999999999887788888777888999999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEe
Q psy14060        208 AENRGGKAKCSANLVVEE  225 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|..|.....+.|.|..
T Consensus        83 a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           83 CTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCcEEEEEEEEEEC
Confidence            999999999889998875

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.71  E-value=1.6e-16  Score=125.98  Aligned_cols=140  Identities=12%  Similarity=0.074  Sum_probs=104.1

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E-----------e-cCCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F-----------P-ITSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~-----------~-~~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      .+.+...+....+..|+++.|.|.+.+.|.+.+.|+|+.  .           . .....++.+.......+|.|.++..
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            344555667788999999999999998888999999842  1           1 1123466666666778899999999


Q ss_pred             CCCEEEEEEEEeCCcee-EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-C-CCeeEEeeCCE
Q psy14060        199 EDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-K-PLDVYWLKVSS  275 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~  275 (283)
                      +|+|.|.|.+.+..+.. .....+.|....       .+|.+...+....+..|+.+.|.|.+.+. | .+.+.|++||.
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~  176 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTV-------AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA  176 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCC-------BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCC-------CCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCC
Confidence            99999999998876532 223456654321       46777665555555678999999999985 4 47999999999


Q ss_pred             EecC
Q psy14060        276 LSDV  279 (283)
Q Consensus       276 ~l~~  279 (283)
                      .+..
T Consensus       177 ~~~~  180 (237)
T 3sob_L          177 LQSG  180 (237)
T ss_dssp             ECCS
T ss_pred             CCCC
Confidence            8864

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.71  E-value=9.8e-17  Score=125.29  Aligned_cols=149  Identities=10%  Similarity=0.100  Sum_probs=96.7

Q ss_pred             eeeecCcEEEEEEEccC-------ccce-EEeec-----------------------CCCEEEEE--cCCEEEEEEccCC
Q psy14060         59 EIHTAKSQQVQKEKKGD-------KEIV-RKITA-----------------------TETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~-------~~i~-~~~~~-----------------------~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      .+.+|+.++|.|.+.+.       +... .|...                       ..++.+..  ..+..+|.|.+++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   90 (214)
T 2zg1_A           11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR   90 (214)
T ss_dssp             EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence            36678899999999864       2111 23221                       13444332  1235579999999


Q ss_pred             CCCCeEEEEEEEeccee--e---eeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeee----cCCEEEEEeCCEe
Q psy14060        106 LDDDGYYAITERKYYAL--S---DLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGD----PLPTIKWFREDFP  173 (283)
Q Consensus       106 ~~D~G~Y~C~a~n~~~~--~---~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~----p~~~~~W~k~~~~  173 (283)
                      .+|+|.|.|.+.+..+.  .   ....+.+   ..+|.+.. +.  .+.+|+.++|.|.+.+.    |.|.+.|++++..
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~  167 (214)
T 2zg1_A           91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS  167 (214)
T ss_dssp             GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTS
T ss_pred             HhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCc
Confidence            99999999999887521  1   1222222   22454433 22  36789999999999763    7899999999865


Q ss_pred             cCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        174 ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      +.....      .....|.|..+..+|.|.|+|.|.|..+...
T Consensus       168 ~~~~~~------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~  204 (214)
T 2zg1_A          168 PLDPET------TRSSELTLTPRPEDHGTNLTCQMKRQGAQVT  204 (214)
T ss_dssp             SSCSSC------CCSSEEEECCCTTCCSCEEEEEEECC----C
T ss_pred             cCCCCc------eeEEEEEEecccHHcCcEEEEEEEeCCCCcc
Confidence            432111      2345699999999999999999999765433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.71  E-value=2.2e-16  Score=123.17  Aligned_cols=134  Identities=12%  Similarity=0.067  Sum_probs=98.0

Q ss_pred             CCceeecCCCcEEEEEEEeeec---CCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP---LPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p---~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G  202 (283)
                      +....+..|+.+.|.|.+.+.|   .+.+.|+|++  ..+            ....++.+........|.|.++..+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6778899999999999999876   4789999863  221            1124566655666778999999999999


Q ss_pred             EEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        203 VFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .|.|.+.|..+... ....|.|....      ..+|.+...+....+..|+.++|.|.+.|.+++  .|.|++||+.+..
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQP------KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSC------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCC------CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            99999999876422 22455554210      036776665444445679999999999986544  8999999998854

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.71  E-value=7.1e-16  Score=119.29  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=94.2

Q ss_pred             eeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ..+..|++++|.|.+ +.|.|  .|.|++.+..+   .+  .........|.|.+++.+|.|.|.|.+.|..+.....+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            588999999999999 88888  99999965433   12  222345678999999999999999999999988888899


Q ss_pred             EEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC----CeeEEeeCCEEecCC
Q psy14060        221 LVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP----LDVYWLKVSSLSDVK  280 (283)
Q Consensus       221 l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~----~~v~W~~~g~~l~~~  280 (283)
                      |.|..          +|........ .+..|+.+ |.|.+.|. |.    ++|+|+|||++|...
T Consensus        91 ltV~~----------~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           91 LLVYA----------FPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             EEEEB----------CCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             EEEEe----------cCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            99985          4544332222 56678888 99999985 63    489999999999654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=1.4e-16  Score=125.96  Aligned_cols=163  Identities=9%  Similarity=0.079  Sum_probs=101.4

Q ss_pred             eeecCcEEEEEEEccCc----cceEEeec-------------------------CCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIVRKITA-------------------------TETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~~~~~~-------------------------~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      +.+|++++|.|.+.+.+    .+ .|...                         ..|+.+..+  .+..+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (227)
T 1mju_H           12 VKPGASVKLSCKASGYTFTNYWI-NWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDD   90 (227)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCE-EEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEecCCccccceE-EEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCccc
Confidence            66788999999998764    22 22211                         235555432  357899999999999


Q ss_pred             CeEEEEEEEeccee--eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCe
Q psy14060        109 DGYYAITERKYYAL--SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDF  180 (283)
Q Consensus       109 ~G~Y~C~a~n~~~~--~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~  180 (283)
                      +|.|.|.+.+....  .....+.+    ..+|.+........+..|+.++|.|.+.|. |.+ .+.|++++..+......
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~  170 (227)
T 1mju_H           91 SAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP  170 (227)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred             CEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECC
Confidence            99999999886321  11112222    234555443333346679999999999986 766 99999998764211000


Q ss_pred             EEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        181 QIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       181 ~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      .+...+   ..+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       171 ~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          171 AVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             CEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            011111   13468999988878 99999999987665555555443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.71  E-value=5.8e-16  Score=121.73  Aligned_cols=156  Identities=10%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+    .+. |..                         ...|+.+...  .+..+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           11 LVQPGGSLKLSCAASGFDFSKYWMS-WVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEE-EEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEecCccCCCceEE-EEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence            466788999999998754    222 211                         1245665542  45789999999999


Q ss_pred             CCeEEEEEEEeccee----eeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEEEeCCEecCC
Q psy14060        108 DDGYYAITERKYYAL----SDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKWFREDFPITS  176 (283)
Q Consensus       108 D~G~Y~C~a~n~~~~----~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W~k~~~~~~~  176 (283)
                      |+|.|.|.+.+..+.    .....+.+    ..+|.+.... ...+..|+.+.|.|.+.+. |.  +.+.|++++..+..
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~  168 (220)
T 2fbj_H           90 DTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITT  168 (220)
T ss_dssp             GCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEE
T ss_pred             hCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecce
Confidence            999999999886431    11112222    2355555443 3456789999999999987 66  68999999876411


Q ss_pred             -CCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        177 -SPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       177 -~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                       .........+.   .+.|.|......|.|.|+|.+.|..+...
T Consensus       169 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          169 VNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence             00000101111   23588988888999999999999987644

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.71  E-value=3.9e-17  Score=128.29  Aligned_cols=137  Identities=9%  Similarity=-0.027  Sum_probs=99.1

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEE--EEEEcCCCCCCCEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--ILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ..+|.+...+. ..+..|++++|.|.+.+ +.+.+.|+|++..+..... .........  .|.|.++..+|+|.|+|.+
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            45677777666 57899999999999987 7889999999765432111 110111223  6999999999999999999


Q ss_pred             EeCCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        209 ENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       209 ~n~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      .|..+...  ..+.|.|....       .+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+.
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~-------~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~  147 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLY-------GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSL  147 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSS-------CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSC
T ss_pred             EcCCCceeecCCEEEEEcCcc-------cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccc
Confidence            99876433  33566666421       256665544 5678999999999977777788999999998664

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.71  E-value=1.4e-15  Score=119.75  Aligned_cols=159  Identities=11%  Similarity=0.106  Sum_probs=103.3

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+    .+. |..                         ...|+.+..+  .+..+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           11 VVQPGKSLRLSCAASGFTFSGYGMH-WVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEE-EEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEecCcccCCceEE-EEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            467788999999998754    222 211                         1245555432  34789999999999


Q ss_pred             CCeEEEEEEEecce-------eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEe-CCEe
Q psy14060        108 DDGYYAITERKYYA-------LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFR-EDFP  173 (283)
Q Consensus       108 D~G~Y~C~a~n~~~-------~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k-~~~~  173 (283)
                      |+|.|.|.+.+..+       ......+.+    ..+|.+........+..|+.+.|.|.+.+. |.+ .+.|++ ++..
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSD  169 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCB
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCc
Confidence            99999999988631       111112222    234555432222345789999999999987 776 999999 8877


Q ss_pred             cCCCCCe-EEEEeC---CEEEEEEcCCCC--CCCEEEEEEEEeCCceeEEE
Q psy14060        174 ITSSPDF-QIHTFS---TKSILIMRQVFM--EDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       174 ~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      +.....+ .....+   ..+.|.|.....  +|.|.|+|.+.|..+.....
T Consensus       170 l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          170 ISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             CSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             cceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            6530000 000111   124588877776  78999999999998775543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=123.41  Aligned_cols=142  Identities=11%  Similarity=0.039  Sum_probs=92.2

Q ss_pred             eeecCcEEEEEEEccCc---cceEEeecC------------------------CCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIVRKITAT------------------------ETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~~~~~~~------------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      +.+|++|+|.|.+.+.+   .+ .|...+                        .|+.+.   ...+|.|.+++.+|+|.|
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~~v-~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y   85 (193)
T 2if7_A           10 GILGESVTLPLEFPAGEKVNFI-TWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDTGSY   85 (193)
T ss_dssp             EETTSCEEECCCCCCCSCCCEE-EEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGCEEE
T ss_pred             EEecCeEEEeccCCCcccccEE-EEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccCceE
Confidence            56788999999987533   23 222211                        122222   246799999999999999


Q ss_pred             EEEEEeccee-eeeeccCCCCC---CeEEecCCceeecCCC-cEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeC
Q psy14060        113 AITERKYYAL-SDLSEQKPAKP---PVFTKKIQPCRAFEQD-QARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFS  186 (283)
Q Consensus       113 ~C~a~n~~~~-~~~~~~~~~~~---p~~~~~~~~~~~~~g~-~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~  186 (283)
                      +|.+.+..+. .....+.+..+   |.+....  .....|. .+.|.|.+.+. |.|.+.|++++..+....        
T Consensus        86 ~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~--------  155 (193)
T 2if7_A           86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP--------  155 (193)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS--------
T ss_pred             EEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC--------
Confidence            9999988763 22223333333   3333222  1223455 79999999985 579999999998764322        


Q ss_pred             CEEEEEEcCCCC-CCCEEEEEEEEeCCceeEEE
Q psy14060        187 TKSILIMRQVFM-EDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       187 ~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~  218 (283)
                         .|.|..... .|.|.|+|.|.|..|..+..
T Consensus       156 ---~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          156 ---NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             ---EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             ---eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence               255543344 38999999999999887543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.70  E-value=7.1e-17  Score=130.94  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             CCCCCCeEEEEEEEecceeeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec-------
Q psy14060        104 SELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI-------  174 (283)
Q Consensus       104 ~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~-------  174 (283)
                      ..+.|.+.|.|.+.+..+....     .....+...+....+..|++++|.|.+.+ +.+.+.|||..  ...       
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~-----~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~   76 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGG-----GGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQ   76 (270)
T ss_dssp             ------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCcccc-----ccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEEC
Confidence            4578999999999887663321     12233455566788999999999999866 77899999831  110       


Q ss_pred             -----CCC---C-CeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeCCc----eeEEEEEEEEEeccCCCCCCCCCCeEE
Q psy14060        175 -----TSS---P-DFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENRGG----KAKCSANLVVEEKRQGGRGGVVPPSFL  240 (283)
Q Consensus       175 -----~~~---~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~~~~~p~~~  240 (283)
                           ...   . ++.+.. .....+|.|.++..+|+|.|+|.+.+...    .......|.|....    ....+|.+.
T Consensus        77 ~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~v~  152 (270)
T 3qib_D           77 NQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDL----KNVFPPEVA  152 (270)
T ss_dssp             TTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCS----TTCBCCEEE
T ss_pred             CCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccc----ccccCCceE
Confidence                 000   0 333322 22356899999999999999999986432    22233456666410    001245544


Q ss_pred             e-cCCceEEcCCCeEEEEEEEEe-eCCC-eeEEeeCCEEecC
Q psy14060        241 T-TISSAVINVGQLARFDAKISA-TKPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       241 ~-~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~g~~l~~  279 (283)
                      . .+....+..|+.++|.|.+.| .|.+ .+.|++||+.+..
T Consensus       153 ~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          153 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             EEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence            3 333445567999999999998 5666 7999999999864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.70  E-value=4e-17  Score=123.77  Aligned_cols=125  Identities=17%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+...          ...|.|.++..+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCC
Confidence            46777777787889999999999999887775 69999999987643          34699999999999999999988


Q ss_pred             CCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-eeCCCeeEEeeCCEEecC
Q psy14060        211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~l~~  279 (283)
                      ..+..  ...|.|..          ++.+... ....+.+|+.+.|.|.+. +.|.+.+.|++||+.+..
T Consensus        73 ~~~s~--~~~l~V~~----------~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (176)
T 1f2q_A           73 VNESE--PVYLEVFS----------DWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY  129 (176)
T ss_dssp             SSCCC--CEEEEEEC----------SSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred             ccccc--cEEEEEeC----------cceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee
Confidence            66543  45566652          3443333 346788999999999994 566679999999998854

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.70  E-value=1e-17  Score=132.70  Aligned_cols=155  Identities=8%  Similarity=-0.019  Sum_probs=85.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeec--------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------------TETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|++++|.|.+.+.+... .|...                    ..++.....+....|.|.+++.+|+|.|.|.+.
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~  113 (233)
T 3bqu_C           34 SMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQS  113 (233)
T ss_dssp             -------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEEC
T ss_pred             EEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEEe
Confidence            367888999999998876221 33221                    123333223345689999999999999999998


Q ss_pred             eccee--eeeeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeec-CC-EEEEEeCCEecCCCCCeE--EEEeC--
Q psy14060        118 KYYAL--SDLSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDP-LP-TIKWFREDFPITSSPDFQ--IHTFS--  186 (283)
Q Consensus       118 n~~~~--~~~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~-~~~W~k~~~~~~~~~~~~--~~~~~--  186 (283)
                      |..+.  .....+.+.   .+|.+...+.......|+.++|.|.+.|.+ .+ .+.|+|++..+.......  .....  
T Consensus       114 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  193 (233)
T 3bqu_C          114 DNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS  193 (233)
T ss_dssp             SSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTC
T ss_pred             cCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCC
Confidence            87542  112223332   256665544443445789999999999864 43 799999998765430000  00000  


Q ss_pred             ---CEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        187 ---TKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       187 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                         ..+.|.|.....+|.|.|+|.|.|...
T Consensus       194 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          194 TYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             CEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence               124688888888999999999998753

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.70  E-value=3.7e-16  Score=127.47  Aligned_cols=152  Identities=11%  Similarity=0.079  Sum_probs=104.8

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEE--EcCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEME--HKGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~--~~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++|+|.|.+.+..    .+ .|..                         ...++.+.  ......+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (280)
T 3fku_X           11 VKKPGSSVKVSCTSSEVTFSSFAI-SWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSE   89 (280)
T ss_dssp             EECTTCCEEEEEEECCSCCTTSCE-EECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCST
T ss_pred             EECCCCcEEEEEEeeccCCCCeEE-EEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            366788999999998742    22 2211                         11355555  3455689999999999


Q ss_pred             CCeEEEEEEEecc---------e-eeeeeccCCCC---------------CCeEEecCCceeecCCCcEEEEEEEee-ec
Q psy14060        108 DDGYYAITERKYY---------A-LSDLSEQKPAK---------------PPVFTKKIQPCRAFEQDQARFEVEFDG-DP  161 (283)
Q Consensus       108 D~G~Y~C~a~n~~---------~-~~~~~~~~~~~---------------~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p  161 (283)
                      |+|.|.|.+.+..         . ......+.+..               ++.+...+. ..+.+|++++|.|.+.+ .+
T Consensus        90 DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~  168 (280)
T 3fku_X           90 DTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNV  168 (280)
T ss_dssp             TCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCC
T ss_pred             hCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCC
Confidence            9999999998861         1 11111222222               444444444 78899999999999987 44


Q ss_pred             -CCEEEEEeC--CEecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        162 -LPTIKWFRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       162 -~~~~~W~k~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                       .+.+.|||.  +..+.            ...++.+........|.|.++..+|+|.|+|.+.+..
T Consensus       169 ~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          169 GNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence             478999983  22111            1245666666677789999999999999999999876

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.69  E-value=3.7e-16  Score=123.51  Aligned_cols=160  Identities=9%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             eeeecCcEEEEEEEccCcc----ce-EEee------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKE----IV-RKIT------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~----i~-~~~~------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+.    .. .|..                        ...|+.+...  .+...|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (228)
T 3bae_H           11 LLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTA   90 (228)
T ss_dssp             EECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcc
Confidence            4677889999999987651    22 2221                        1235555432  34689999999999


Q ss_pred             CCeEEEEEEEecce----------eeeeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCC
Q psy14060        108 DDGYYAITERKYYA----------LSDLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFRED  171 (283)
Q Consensus       108 D~G~Y~C~a~n~~~----------~~~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~  171 (283)
                      |+|.|.|.+.+..+          ......+.+.    .+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        91 D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~  170 (228)
T 3bae_H           91 DTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  170 (228)
T ss_dssp             GCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCC
Confidence            99999999987642          1111222222    35555543333446789999999999986 777 99999988


Q ss_pred             EecCCCCCeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        172 FPITSSPDFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       172 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      ..+.......+...+   ..+.|.|......| |.|+|.+.|..+......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          171 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             CCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            653211111111111   13468898888766 999999999987755433

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.69  E-value=5.6e-17  Score=131.53  Aligned_cols=188  Identities=14%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             ccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccceEEee--cC--------
Q psy14060         16 KKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKIT--AT--------   85 (283)
Q Consensus        16 ~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~--~~--------   85 (283)
                      .+-+.+.|+|+|..|.......+.|...      |..     ..+.+|++++|.|.+.+......|..  ..        
T Consensus         6 ~~~~~y~~~~~~~~g~~~~~~~~~v~~~------p~~-----v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            6 ADLIAYLKQATKGGGGSGGGGGMKVIQT------PRY-----LVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             ----------------------CCCEEE------CSE-----EEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEE
T ss_pred             hhHHHHHHHHhccCCccccccceeEEeC------CCe-----EEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEE
Confidence            3456778999998887554432222221      111     13677889999999876432112221  00        


Q ss_pred             -------------C-CEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce-----ee---eeecc---CCCCCCeEEe-
Q psy14060         86 -------------E-TTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA-----LS---DLSEQ---KPAKPPVFTK-  138 (283)
Q Consensus        86 -------------~-~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-----~~---~~~~~---~~~~~p~~~~-  138 (283)
                                   . ++.+.. .....+|.|.+++.+|+|.|.|.+.+...     ..   .+...   ....+|.+.. 
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence                         0 444432 23468999999999999999999986321     11   11111   1222555443 


Q ss_pred             cCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCeE---EE-----EeCC---EEEEEEcCCCCCC-CEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDFQ---IH-----TFST---KSILIMRQVFMED-SGVF  204 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~~---~~-----~~~~---~~~l~i~~~~~~d-~G~Y  204 (283)
                      .+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+.......   ..     ..+.   .+.|.|.....+| .|.|
T Consensus       155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~Y  234 (270)
T 3qib_D          155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF  234 (270)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEE
T ss_pred             CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE
Confidence            334445556899999999998 5666 899999999886421100   00     0011   1357777777777 9999


Q ss_pred             EEEEEeCCce
Q psy14060        205 AVIAENRGGK  214 (283)
Q Consensus       205 ~C~a~n~~g~  214 (283)
                      +|.+.|....
T Consensus       235 tC~v~~~~l~  244 (270)
T 3qib_D          235 RCQVQFYGLS  244 (270)
T ss_dssp             EEEEEECCBC
T ss_pred             EEEEEecCCC
Confidence            9999987643

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.69  E-value=3.1e-16  Score=125.30  Aligned_cols=156  Identities=12%  Similarity=0.084  Sum_probs=102.1

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee-------------------------cCCCEEEEE-cCCEEEEEEccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT-------------------------ATETTEMEH-KGKIQERVVDASELDDDGY  111 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~-------------------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+.+|+.++|.|.+.+.+... .|..                         ...++.+.. .....+|.|.+++.+|+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~   91 (246)
T 4dzb_B           12 ISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSF   91 (246)
T ss_dssp             EEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             EEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEE
Confidence            366788999999999877221 2222                         014555543 2457899999999999999


Q ss_pred             EEEEEEecce-----eeeeeccC------CCCCCeEE-ecCCceeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCC
Q psy14060        112 YAITERKYYA-----LSDLSEQK------PAKPPVFT-KKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSS  177 (283)
Q Consensus       112 Y~C~a~n~~~-----~~~~~~~~------~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~  177 (283)
                      |.|.+.+..+     ......+.      ...+|.+. ..+....+..|+.+.|.|.+.|.|++  .+.|++++..+...
T Consensus        92 Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  171 (246)
T 4dzb_B           92 YICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG  171 (246)
T ss_dssp             EEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             EEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCC
Confidence            9999986532     11111111      12355543 33444456679999999999987654  89999999887643


Q ss_pred             CCeEEEE--------eCC---EEEEEEcCCCCCC-CEEEEEEEEeCCce
Q psy14060        178 PDFQIHT--------FST---KSILIMRQVFMED-SGVFAVIAENRGGK  214 (283)
Q Consensus       178 ~~~~~~~--------~~~---~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  214 (283)
                      .......        .+.   .+.|.|.....+| .|.|+|.+.|....
T Consensus       172 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          172 VCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             cccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            1110000        111   1348888887778 99999999987644

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.69  E-value=2.1e-16  Score=124.75  Aligned_cols=156  Identities=8%  Similarity=0.054  Sum_probs=100.6

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+    .+ .|..                         ...++.+..+  .+..+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v-~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (225)
T 1op3_H           11 LVKAGGSLILSCGVSNFRISAHTM-NWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (225)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCE-EEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EecCCCCEEEEEEecCcccCCceE-EEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            477788999999998764    22 2211                         1245555432  35789999999999


Q ss_pred             CCeEEEEEEEecce---------eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCE
Q psy14060        108 DDGYYAITERKYYA---------LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDF  172 (283)
Q Consensus       108 D~G~Y~C~a~n~~~---------~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~  172 (283)
                      |+|.|.|.+.+..+         ......+.+    ..+|.+........+..|+.+.|.|.+.|. |.+ .+.|++++.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  169 (225)
T 1op3_H           90 DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  169 (225)
T ss_dssp             GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSC
T ss_pred             hCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCC
Confidence            99999999988642         111112222    124544432222235679999999999986 766 999999987


Q ss_pred             ecCCCCCeEEEEe-C---CEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        173 PITSSPDFQIHTF-S---TKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       173 ~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      .+.......+... +   ..+.|.|......| |.|+|.|.|..+...
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          170 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             CTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            5321000001111 1   12358999888888 999999999765443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.69  E-value=1.8e-16  Score=122.53  Aligned_cols=135  Identities=12%  Similarity=0.118  Sum_probs=95.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+. ..+.+|++++|.|.+.+.|. .+.|+|++..+...... .........|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            4677776665 47889999999999988664 69999998866311000 000112346999999999999999999998


Q ss_pred             C-ce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        212 G-GK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       212 ~-g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      . +.  .+..+.|.|....       .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+.
T Consensus        81 ~~g~~~~s~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~  141 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAY-------IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEH  141 (198)
T ss_dssp             TTEECCCCCCEEEEEECSS-------CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC-----
T ss_pred             CCCcccCCccEEEEEcccc-------cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccC
Confidence            7 53  3445677776521       245554443 4678899999999999987 78999999998763

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.69  E-value=4.3e-16  Score=124.99  Aligned_cols=140  Identities=14%  Similarity=0.050  Sum_probs=100.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec-----CCEEEEEeCCE--ec------------CCCCCeEEEEeCCEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFREDF--PI------------TSSPDFQIHTFSTKSILIM  193 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-----~~~~~W~k~~~--~~------------~~~~~~~~~~~~~~~~l~i  193 (283)
                      .+.+...+....+..|++++|.|.+.+.+     .+.+.|||++.  .+            ....++.+...+...+|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455556778899999999999999877     58899999641  11            1124566666666778999


Q ss_pred             cCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEE
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYW  270 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W  270 (283)
                      .++..+|+|.|.|.+.|..+... ....|.|....       .+|.+...+....+..|+.++|.|.+.|. |.+ .|.|
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  186 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKW  186 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC-------cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEE
Confidence            99999999999999988765321 22456664321       35666654444344579999999999985 443 7999


Q ss_pred             eeCCEEecC
Q psy14060        271 LKVSSLSDV  279 (283)
Q Consensus       271 ~~~g~~l~~  279 (283)
                      ++||+.+..
T Consensus       187 ~k~g~~~~~  195 (252)
T 3bkj_L          187 KIDGSERQN  195 (252)
T ss_dssp             EETTEEECS
T ss_pred             EECCeecCC
Confidence            999998754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.69  E-value=3.9e-16  Score=124.67  Aligned_cols=140  Identities=19%  Similarity=0.168  Sum_probs=99.0

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEe----------------CCEecCCC---CCeEEEE-eCCEEEEEEcC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR----------------EDFPITSS---PDFQIHT-FSTKSILIMRQ  195 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k----------------~~~~~~~~---~~~~~~~-~~~~~~l~i~~  195 (283)
                      +...+....+.+|+.+.|.|.+.+.+.+.+.|||                ++......   .++.+.. .....+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4555677889999999999999998889999998                32222221   3444443 34567899999


Q ss_pred             CCCCCCEEEEEEEEeCCc----eeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEeeCCC--ee
Q psy14060        196 VFMEDSGVFAVIAENRGG----KAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPL--DV  268 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~--~v  268 (283)
                      +..+|+|.|+|.+.+..+    .......|.|....    ....+|.+.. .+....+..|+.++|.|.+.|.|++  .+
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v  159 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  159 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCC----CcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEE
Confidence            999999999999987643    12233456666310    0012455443 3444456779999999999997765  89


Q ss_pred             EEeeCCEEecC
Q psy14060        269 YWLKVSSLSDV  279 (283)
Q Consensus       269 ~W~~~g~~l~~  279 (283)
                      .|++||+.+..
T Consensus       160 ~W~k~g~~l~~  170 (246)
T 4dzb_B          160 SWWVNGKEVHS  170 (246)
T ss_dssp             EEEETTEEECT
T ss_pred             EEEECCEECCC
Confidence            99999999865

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=9.7e-17  Score=125.23  Aligned_cols=135  Identities=13%  Similarity=0.085  Sum_probs=98.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCC--EecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +....+..|+.+.|.|.+.+.|.+.+.|||++  ..+.            ...++.+........|.|.++..+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            56678899999999999988887889999853  2220            134566666667778999999999999999


Q ss_pred             EEEEeC-Ccee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecCC
Q psy14060        206 VIAENR-GGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDVK  280 (283)
Q Consensus       206 C~a~n~-~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~~  280 (283)
                      |.+.|. .+..  .....+.|....      ..+|.+...+....+.+|+.+.|.|.+.|. |. +.|.|++||+.+...
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGP------KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCC------CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEcccCcccccCCceEEEEccCC------CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            999973 2221  122456664311      135666654444455689999999999987 54 689999999988643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.68  E-value=1.2e-16  Score=126.13  Aligned_cols=135  Identities=12%  Similarity=0.153  Sum_probs=101.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC-CEEEEEeCCEecC---------CCCCe--EEE----------EeCCEEEEEEcCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPIT---------SSPDF--QIH----------TFSTKSILIMRQV  196 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~~~~~~---------~~~~~--~~~----------~~~~~~~l~i~~~  196 (283)
                      .+....+..|+.+.|.|.+.+.+. +.+.|++++....         ....+  ++.          .... ..|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v   84 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEA   84 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEccc
Confidence            345678899999999999999875 8999998654311         00001  111          1111 23999999


Q ss_pred             CCCCCEEEEEEEEeCC-ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeE-EEEEEE-EeeCCCeeEEeeC
Q psy14060        197 FMEDSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLA-RFDAKI-SATKPLDVYWLKV  273 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v-~L~C~~-~g~p~~~v~W~~~  273 (283)
                      ..+|+|.|+|.+.+.. +.....+.|.|....       ..|.+...+....+.+|+.+ .|.|.+ .+.|.|.+.|+++
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p-------~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~  157 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKP-------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN  157 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC-------CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecC-------CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence            9999999999999987 777777888887532       34666666666778899988 999999 8999999999999


Q ss_pred             CEEecCCC
Q psy14060        274 SSLSDVKR  281 (283)
Q Consensus       274 g~~l~~~~  281 (283)
                      |..+....
T Consensus       158 ~~~~~~~~  165 (231)
T 2pet_A          158 GQRLEVPV  165 (231)
T ss_dssp             TEECCCCS
T ss_pred             CccCcccc
Confidence            99987653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=1.3e-15  Score=106.92  Aligned_cols=95  Identities=18%  Similarity=0.252  Sum_probs=85.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.|...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+........|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            57888888888899999999999999999999999999999988777888777666788999999999999999999999


Q ss_pred             CceeEEEEEEEEEec
Q psy14060        212 GGKAKCSANLVVEEK  226 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~  226 (283)
                      .|.....+.|.|...
T Consensus        86 ~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDK  100 (114)
T ss_dssp             SCEEECCEEEEEECS
T ss_pred             CCcEEEEEEEEEECC
Confidence            999888889998864

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.68  E-value=4.8e-16  Score=121.96  Aligned_cols=133  Identities=13%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEecC-----------------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPIT-----------------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+..|+++.|.|.+.+.+  .+.+.|+|+  +..+.                 ...++.+...  ....+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            45567889999999999998764  689999986  32211                 1234555433  3456899999


Q ss_pred             CCCCCCEEEEEEEEeCCce----eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-eeE
Q psy14060        196 VFMEDSGVFAVIAENRGGK----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVY  269 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~  269 (283)
                      +..+|+|.|.|.+.|..+.    ......|.|....      ..+|.+........+.+|+.+.|.|.+.| .|.| .|.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  159 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC------CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCC------CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEE
Confidence            9999999999999998632    1123566665411      12466654443445678999999999998 8988 999


Q ss_pred             EeeCCEEe
Q psy14060        270 WLKVSSLS  277 (283)
Q Consensus       270 W~~~g~~l  277 (283)
                      |+++|..+
T Consensus       160 W~~~g~~~  167 (219)
T 1c1e_H          160 WNSGSLSS  167 (219)
T ss_dssp             EGGGTBCT
T ss_pred             EEeCCccc
Confidence            99999764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.68  E-value=2.8e-16  Score=121.79  Aligned_cols=137  Identities=8%  Similarity=0.015  Sum_probs=97.6

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ..........|.|.++..+|+|.|+|.+.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            34677666655 67889999999999975 77899999998755321100 00101124579999999999999999998


Q ss_pred             eCCc-----eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        210 NRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       210 n~~g-----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      |...     ..+..+.|.|....       .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+.
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~-------~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLY-------EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHE  148 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSS-------CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSC
T ss_pred             cCCCCccccCCCCCEEEEeeccC-------CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccC
Confidence            7532     22344677776521       3566666554 47899999999999886 568899999997654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.68  E-value=3.4e-16  Score=122.52  Aligned_cols=134  Identities=10%  Similarity=0.016  Sum_probs=94.9

Q ss_pred             CCceeecCCCcEEEEEEE-eeec-CCEEEEEeCCE--ec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        140 IQPCRAFEQDQARFEVEF-DGDP-LPTIKWFREDF--PI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~-~g~p-~~~~~W~k~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      +....+..|+++.|.|.+ .+.+ .+.+.|+|++.  .+            ....++.+........|.|.++..+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            456788999999999995 4433 57899998531  11            01235666656667789999999999999


Q ss_pred             EEEEEEeCCc--eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        204 FAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       204 Y~C~a~n~~g--~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      |.|.+.|..+  .......|.|....       .+|.+...+.......|+.+.|.|.+.|. |.+ .|.|++||+.+..
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  159 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTV-------AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  159 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCC-------CCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence            9999999876  22223456664311       35666654433333468999999999984 554 8999999998764


Q ss_pred             C
Q psy14060        280 K  280 (283)
Q Consensus       280 ~  280 (283)
                      .
T Consensus       160 ~  160 (216)
T 2xzc_L          160 N  160 (216)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.68  E-value=1.8e-15  Score=103.27  Aligned_cols=94  Identities=22%  Similarity=0.413  Sum_probs=85.1

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            34677888888889999999999999999999999999999999887888888777788899999999999999999999


Q ss_pred             CCceeEEEEEEEEE
Q psy14060        211 RGGKAKCSANLVVE  224 (283)
Q Consensus       211 ~~g~~~~~~~l~v~  224 (283)
                      ..|.....+.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 3puc_A           84 SAGSVSSSCKLTIK   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEE
Confidence            99999888888876

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.68  E-value=9.1e-16  Score=123.25  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=103.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce--E--------Ee--------------ecCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV--R--------KI--------------TATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~--~--------~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.+..    .+.  +        .+              ....|+.+..+  .+..+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (253)
T 3liz_H           11 LVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSED   90 (253)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhh
Confidence            467788999999997732    222  1        11              01245555432  367889999999999


Q ss_pred             CeEEEEEEEecc----e---ee-eeecc-CCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCC
Q psy14060        109 DGYYAITERKYY----A---LS-DLSEQ-KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSS  177 (283)
Q Consensus       109 ~G~Y~C~a~n~~----~---~~-~~~~~-~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~  177 (283)
                      +|.|.|.+.+..    .   .. .+... ....+|.+........+..|+.+.|.|.+.+ .|.+ .+.|++++..+...
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~  170 (253)
T 3liz_H           91 TAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  170 (253)
T ss_dssp             CEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceE
Confidence            999999998752    1   11 12211 2234666654444455667999999999998 6766 89999998743110


Q ss_pred             CCeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        178 PDFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       178 ~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      ........+   ..+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       171 ~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          171 TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             ECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             eCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            000001111   12468999999999 9999999999887666665544

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.68  E-value=7.3e-15  Score=116.42  Aligned_cols=165  Identities=10%  Similarity=0.038  Sum_probs=101.5

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee------------------------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT------------------------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~------------------------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.+.+    .+. |..                        ...|+.+..  .++...|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           11 LLKPSETLSLTCAVYGGSFSDYYWS-WIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEE-EEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEEccccCCCceEE-EEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            467788999999998753    222 111                        134566554  2457899999999999


Q ss_pred             CeEEEEEEE--ec--c---eeeeeeccCC----CCCCeEEecCCceeecCC-CcEEEEEEEeee-cCC-EEEEEe-CCEe
Q psy14060        109 DGYYAITER--KY--Y---ALSDLSEQKP----AKPPVFTKKIQPCRAFEQ-DQARFEVEFDGD-PLP-TIKWFR-EDFP  173 (283)
Q Consensus       109 ~G~Y~C~a~--n~--~---~~~~~~~~~~----~~~p~~~~~~~~~~~~~g-~~v~l~C~~~g~-p~~-~~~W~k-~~~~  173 (283)
                      +|.|.|.+.  +.  .   .......+.+    ..+|.+........+..| +.+.|.|.+.+. |.+ .+.|++ ++..
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD  169 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCc
Confidence            999999998  32  1   1111112222    234554432222234577 899999999986 776 999999 8877


Q ss_pred             cCCCCCe-EEEEeC---CEEEEEEcCCCC--CCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        174 ITSSPDF-QIHTFS---TKSILIMRQVFM--EDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       174 ~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +.....+ .....+   ..+.|.|.....  +|.|.|+|.+.|..+.......+.+.
T Consensus       170 l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          170 ISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             ECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             eeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            6430000 000111   124688888876  78999999999999877666555443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=8.9e-16  Score=117.65  Aligned_cols=135  Identities=12%  Similarity=0.005  Sum_probs=97.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+.. .+..|++++|.|.+.+ +.+.+.|+|++..+...... .........|.|.++..+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            36777776666 7899999999999876 55789999999875411000 001124567999999999999999999987


Q ss_pred             Ccee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        212 GGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       212 ~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      .+..  +..+.|.|....       .+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.
T Consensus        80 ~~~~~~s~~~~l~V~~~~-------~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  139 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMY-------DTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSH  139 (188)
T ss_dssp             TEECCCCCCEEEEEESCS-------CCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCE
T ss_pred             CCCCCCCCceEEEecccC-------CCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccc
Confidence            6543  334666666421       256666544 456899999999999876 557899999997653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=2.8e-15  Score=102.37  Aligned_cols=94  Identities=27%  Similarity=0.362  Sum_probs=82.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+. .......|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            3677888888889999999999999999999999999999998876665443 355677899999999999999999999


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999888888763

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.67  E-value=4.6e-15  Score=116.52  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee---------------------------cCCCEEEEEc--CCEEEEEEccCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT---------------------------ATETTEMEHK--GKIQERVVDASE  105 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~---------------------------~~~~~~~~~~--~~~~~L~i~~~~  105 (283)
                      .+.+|++|+|.|.+.+.+    .+. |..                           ...|+.+..+  ....+|.|.+++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (221)
T 3m8o_H           11 LVQPGGSLKLSCAASGFTLSGSNVH-WVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK   89 (221)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEE-EEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred             EEcCCCCEEEEEEcccccccccEEE-EEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence            366788999999998743    221 111                           1245555432  457789999999


Q ss_pred             CCCCeEEEEEEEecc-----eeeeeecc--CCCCCCeEE-ecCCceeecCCCcEEEEEEEee-ecC-C-EEEEEeCCEec
Q psy14060        106 LDDDGYYAITERKYY-----ALSDLSEQ--KPAKPPVFT-KKIQPCRAFEQDQARFEVEFDG-DPL-P-TIKWFREDFPI  174 (283)
Q Consensus       106 ~~D~G~Y~C~a~n~~-----~~~~~~~~--~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g-~p~-~-~~~W~k~~~~~  174 (283)
                      .+|+|.|.|.+.+..     +......+  ....+|.+. ..+...  ..|+.++|.|.+.+ .|. + .+.|++++..+
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~  167 (221)
T 3m8o_H           90 SDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  167 (221)
T ss_dssp             GGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred             HHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence            999999999998763     11111112  223355554 233322  78999999999998 665 4 89999998765


Q ss_pred             C----------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        175 T----------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       175 ~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      .          ....+.+     .+.|.|......|.|.|+|.+.|..+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          168 TARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             ceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            2          1222222     2358899999999999999999987553

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.67  E-value=2.9e-15  Score=115.83  Aligned_cols=150  Identities=7%  Similarity=-0.080  Sum_probs=102.7

Q ss_pred             eeeecCcEEEEEEEccCccc--e-EEeecC---CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDKEI--V-RKITAT---ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPA  131 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i--~-~~~~~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~  131 (283)
                      .+..|++++|.|.+ |.|..  . .|....   .+...  ......|.|.+++.+|+|.|.|.+.|..+. .....+.+.
T Consensus        18 ~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~   94 (210)
T 1gsm_A           18 AVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   94 (210)
T ss_dssp             EEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEE
Confidence            46778899999999 87632  2 554332   23332  346788999999999999999999998774 345566677


Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee-cC----CEEEEEeCCEecCCCCCe--EEEE--------eCC----EEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL----PTIKWFREDFPITSSPDF--QIHT--------FST----KSILI  192 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~----~~~~W~k~~~~~~~~~~~--~~~~--------~~~----~~~l~  192 (283)
                      .+|....... ..+..|+.+ |.|.+.+. |.    +++.|||++..+......  .+..        ...    .+++.
T Consensus        95 ~~P~~~~i~~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~  172 (210)
T 1gsm_A           95 AFPNQLTVSP-AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWR  172 (210)
T ss_dssp             BCCSEEEEES-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEE
T ss_pred             ecCCCcEEcc-ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEe
Confidence            7776554322 266678888 99999985 64    489999999998543210  1100        011    23455


Q ss_pred             EcCCCCCCCEEEEEEEEeCCc
Q psy14060        193 MRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +......|.+.|+|.|.+...
T Consensus       173 ~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          173 LPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             CCCCCSSCCSEEEEEEEEEET
T ss_pred             ecCCcccCCceEEEEEEeeCC
Confidence            556666777899999988653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.67  E-value=9.5e-16  Score=119.05  Aligned_cols=129  Identities=14%  Similarity=0.211  Sum_probs=95.6

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-------------------CCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-------------------SPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      .+.+..+.+|+.+.|.|...+.+.+.+.|++++.....                   ..++.+.   ...+|.|.++..+
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~   81 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMK   81 (208)
T ss_dssp             EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGG
T ss_pred             cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEcccccc
Confidence            34456788999999999988878899999997542211                   1122221   1235999999999


Q ss_pred             CCEEEEEEEEeCC-ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        200 DSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       200 d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      |+|.|+|.+.+.. +.......|.|....       ..|.+......  +..|+.+.|.|.+.+.| |.+.|+++|..+.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~  151 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPV-------TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ  151 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCC-------CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCC-------CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC
Confidence            9999999999985 556666778777531       23555554443  89999999999999865 8999999999987


Q ss_pred             CC
Q psy14060        279 VK  280 (283)
Q Consensus       279 ~~  280 (283)
                      ..
T Consensus       152 ~~  153 (208)
T 3r4d_A          152 LT  153 (208)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.66  E-value=2.9e-16  Score=119.16  Aligned_cols=120  Identities=13%  Similarity=0.145  Sum_probs=88.0

Q ss_pred             eeecCCCcEEEEEEEee--ecCCEEEEEeCCEecC----------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        143 CRAFEQDQARFEVEFDG--DPLPTIKWFREDFPIT----------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +.+.+|+.+.|.|...+  .+.+.+.|+|++..+.          ...++.+...   .+|.|.++..+|+|.|.|.+.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~---gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC---CcEEEcccccccCEEEEEEEEe
Confidence            46788999999994322  3567899999986542          2334444222   2499999999999999999999


Q ss_pred             CCcee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        211 RGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       211 ~~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      ..|..  ...+.|.|....       ..|.+.        ..+..+.|.|.+.|.|.|.|.|++||+.+...
T Consensus        83 ~~g~~~~~~~~~l~V~~~~-------~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~  139 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMV-------SKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSL  139 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCC-------CCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEEEEEEEeCCC-------CCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCC
Confidence            99886  555677776421       224333        22445899999999999999999999988643

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.66  E-value=4.3e-16  Score=117.17  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+....+..|+.+.|.|.+.+.| .+.+.|++++..+.....          .+.+.++..+|+|.|+|.+.|.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTS
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCC
Confidence            45566667767889999999999999876 578999999998875422          2566789999999999999875


Q ss_pred             CceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-eeCCCeeEEeeCCEEecC
Q psy14060        212 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~l~~  279 (283)
                      ...  ..+.|.|..          ++.+.. .....+.+|+.+.|.|.+. +.|.+.+.|+++|..+..
T Consensus        74 ~~s--~~~~l~v~~----------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (170)
T 3ry4_A           74 SLS--DPVHLTVLF----------EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF  129 (170)
T ss_dssp             BCC--CCEEEEEEC----------CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE
T ss_pred             Cce--EeEEEEEEC----------CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc
Confidence            433  345666663          344433 3456788999999999994 556689999999998753

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.66  E-value=3.3e-16  Score=121.96  Aligned_cols=125  Identities=18%  Similarity=0.221  Sum_probs=94.0

Q ss_pred             CCceeecCCCcEEEEEEEeeec----CCEEEEEe----------------CCEecCC-----CCCeEEEE---eCCEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP----LPTIKWFR----------------EDFPITS-----SPDFQIHT---FSTKSIL  191 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k----------------~~~~~~~-----~~~~~~~~---~~~~~~l  191 (283)
                      +..+.+..|+.+.|.|.+.+.+    .+.+.|++                ++..+..     ..++.+..   .....+|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3456789999999999998876    46999998                3333321     22333321   1134569


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEE
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYW  270 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W  270 (283)
                      .|.++..+|+|.|+|.+.|..+.....+.|.|..          +|.+...+....+..|+.+.|.|.+ .+.|.|.+.|
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W  156 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEW  156 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEE
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEc----------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEE
Confidence            9999999999999999999999888888888875          4444333333447899999999999 8999999999


Q ss_pred             eeCC
Q psy14060        271 LKVS  274 (283)
Q Consensus       271 ~~~g  274 (283)
                      ++++
T Consensus       157 ~~~~  160 (214)
T 3jz7_A          157 QKLS  160 (214)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9943

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.66  E-value=2.3e-16  Score=126.10  Aligned_cols=133  Identities=11%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             cCCceeecCCCcEEEEEEEee---ecCCEEEEEeCCEecC------------------------------CCCCeEEEEe
Q psy14060        139 KIQPCRAFEQDQARFEVEFDG---DPLPTIKWFREDFPIT------------------------------SSPDFQIHTF  185 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g---~p~~~~~W~k~~~~~~------------------------------~~~~~~~~~~  185 (283)
                      .+....+.+|+.+.|.|.+.+   .|.+.+.|+|++....                              ...++.+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            445678999999999999987   7889999999875421                              011111111 


Q ss_pred             CCEEEEEEcCCCCCCCEEEEEEEEeCCcee-----EEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEE
Q psy14060        186 STKSILIMRQVFMEDSGVFAVIAENRGGKA-----KCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAK  259 (283)
Q Consensus       186 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~  259 (283)
                      .....|.|.++..+|+|.|+|.+.|..+..     ...+.|.|....       .+|.+.. .+....+.+|+.+.|.|.
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------~~~~~~~~~~~~~~v~~g~~v~L~C~  159 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT-------PSNNVHVSTAEVVQVDEGNDITMTCP  159 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS-------CCSCCEECCCSEEECCTTCCEEECCC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC-------CCCeEEEecCceEEecCCCcEEEEEE
Confidence            112469999999999999999999987643     446677766421       1333333 344567788999999999


Q ss_pred             EEeeCCCeeEEeeCCEEecC
Q psy14060        260 ISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       260 ~~g~p~~~v~W~~~g~~l~~  279 (283)
                      +.+.|.|.+.|+++|..+..
T Consensus       160 ~~g~p~p~v~W~k~~~~~~~  179 (250)
T 2fbo_J          160 CTDCANANVTWYTGPTFFEN  179 (250)
T ss_dssp             EESCTTCEEEEEEEEECSSC
T ss_pred             ecCCCCCeeEEEeCCCcccc
Confidence            99999999999999987754

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.65  E-value=7.8e-17  Score=127.63  Aligned_cols=140  Identities=12%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--ec------------CCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--PI------------TSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      .+.+...+....+..|+++.|.|.+.+.|.+.+.|+|++.  .+            ....++.+...+...+|.|.++..
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            3445555677789999999999999998888899998532  11            001233332233345799999999


Q ss_pred             CCCEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCE
Q psy14060        199 EDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSS  275 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~  275 (283)
                      +|+|.|.|.+.|..+... ....+.|....       .+|.+...+....+..|+.++|.|.+.|.+++  .++|++||+
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  175 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  175 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC--
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCC-------CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCe
Confidence            999999999988765321 12345554321       25666654444344579999999999986443  799999998


Q ss_pred             EecC
Q psy14060        276 LSDV  279 (283)
Q Consensus       276 ~l~~  279 (283)
                      .+..
T Consensus       176 ~~~~  179 (233)
T 3bqu_C          176 ERQN  179 (233)
T ss_dssp             ---C
T ss_pred             eCCC
Confidence            7754

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.5e-15  Score=121.40  Aligned_cols=138  Identities=14%  Similarity=0.168  Sum_probs=96.7

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec-----------------CCCCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      +....+..|++++|.|.+.+.|  .+.+.|+|+.  ..+                 ....++.+...  ....+|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3557899999999999999876  5789999842  110                 11245665553  34678999999


Q ss_pred             CCCCCEEEEEEEEeCCcee--EEEEEEEEEeccCCC-----CCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeE
Q psy14060        197 FMEDSGVFAVIAENRGGKA--KCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY  269 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~  269 (283)
                      ..+|+|.|.|.+.|..+..  .....|.|.......     .....++.+...+....+.+|+.++|.|.+.+.|.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence            9999999999999984332  223466665320000     000124556666677789999999999999999988999


Q ss_pred             Eee--CCEEe
Q psy14060        270 WLK--VSSLS  277 (283)
Q Consensus       270 W~~--~g~~l  277 (283)
                      |++  +|..+
T Consensus       169 W~k~~~g~~~  178 (247)
T 2ghw_B          169 WYQQKPGQAP  178 (247)
T ss_dssp             EEEECTTSCC
T ss_pred             EEEECCCCCc
Confidence            999  66543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.65  E-value=3.5e-16  Score=122.81  Aligned_cols=140  Identities=9%  Similarity=0.028  Sum_probs=93.0

Q ss_pred             CCCeEEecCCcee--ecCCCcEEEEEEEeee---cC-CEEEEEeCCEecCCCCCeEEEEe-C----CEEEEEEcCCCCCC
Q psy14060        132 KPPVFTKKIQPCR--AFEQDQARFEVEFDGD---PL-PTIKWFREDFPITSSPDFQIHTF-S----TKSILIMRQVFMED  200 (283)
Q Consensus       132 ~~p~~~~~~~~~~--~~~g~~v~l~C~~~g~---p~-~~~~W~k~~~~~~~~~~~~~~~~-~----~~~~l~i~~~~~~d  200 (283)
                      .+|.+...+....  +..|+.+.|.|.+.|.   |. +.+.|+|++..+........... +    ....|.|.++..+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            3555554444444  7899999999999987   33 78999999987653211111000 0    12469999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEE-EeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-eeEEeeCCEEe
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVV-EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKVSSLS  277 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v-~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~g~~l  277 (283)
                      .|.|+|.+.|..+.......+.. ...       ..+|.+...+.......|+.+.|.|.+.| +|.+ .|+|++||..+
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~-------~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~  160 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGL-------VRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTE  160 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCC-------CBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCC-------CCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEec
Confidence            99999999998765422222211 010       14676655443322246999999999999 5665 89999999987


Q ss_pred             c
Q psy14060        278 D  278 (283)
Q Consensus       278 ~  278 (283)
                      .
T Consensus       161 ~  161 (218)
T 2rgs_A          161 E  161 (218)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=2.2e-15  Score=119.75  Aligned_cols=134  Identities=13%  Similarity=0.160  Sum_probs=98.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec----CCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP----LPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~  197 (283)
                      +...+....+.+|+++.|.|.+.+.|    .+.+.|+|++  ..   +         ....++.+...+...+|.|.++.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            45566778899999999999999887    6789999852  11   1         01346666666667789999999


Q ss_pred             CCCCEEEEEEEEeCCce-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC--CeeEEeeC
Q psy14060        198 MEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWLKV  273 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~  273 (283)
                      .+|+|.|.|.+.|..+. ......|.|.....    ...++.+...+....+.+|+.++|.|.+.+.|.  +.+.|+++
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~----~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGS----GGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSC----CCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCC----CCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            99999999999998654 33345666664210    001234555567778999999999999998874  58999995

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=116.90  Aligned_cols=131  Identities=12%  Similarity=0.095  Sum_probs=93.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCE---EEEEeCCEecCCCC------------------CeEEEE---eCCEEEEEEc
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPT---IKWFREDFPITSSP------------------DFQIHT---FSTKSILIMR  194 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~---~~W~k~~~~~~~~~------------------~~~~~~---~~~~~~l~i~  194 (283)
                      .+..+.+..|+++.|.|.+.+.|.+.   +.|+|++..+....                  ++.+..   .....+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            34567889999999999999877664   89999875432110                  111100   1123469999


Q ss_pred             CCCCCCCEEEEEEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060        195 QVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKV  273 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~  273 (283)
                      ++..+|+|.|.|.+.+..+..... ..+.+..         .++..........+..|..+.|.|.+.|.|.|.|+|+++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~  155 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLV---------PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE  155 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB---------CCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEES
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEee---------eccceeeeeeeeeeeeccccceeeeccCCcCceEEEEEC
Confidence            999999999999998876554433 4444443         234444555667788999999999999999999999999


Q ss_pred             CEEec
Q psy14060        274 SSLSD  278 (283)
Q Consensus       274 g~~l~  278 (283)
                      |..+.
T Consensus       156 ~~~~~  160 (218)
T 4frw_A          156 VKGTT  160 (218)
T ss_dssp             SCCEE
T ss_pred             Ccccc
Confidence            87654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.64  E-value=1.6e-15  Score=120.65  Aligned_cols=156  Identities=12%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             eeeecCcEEEEEEEccCccceEEee-----------------------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKIT-----------------------ATETTEMEH-KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~-----------------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|+.++|.|.+.+......|..                       ...++.+.. .....+|.|.+++.+|+|.|.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   92 (240)
T 3q5y_A           13 IKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFC   92 (240)
T ss_dssp             EEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEE
T ss_pred             eecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEE
Confidence            3677899999999876332112221                       124555554 3357789999999999999999


Q ss_pred             EEEec--c----eeeeeeccC----CCCCCeEEe-cCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCeE
Q psy14060        115 TERKY--Y----ALSDLSEQK----PAKPPVFTK-KIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDFQ  181 (283)
Q Consensus       115 ~a~n~--~----~~~~~~~~~----~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~~  181 (283)
                      .+.+.  .    +......+.    ...+|.+.. .+....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+.......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~  172 (240)
T 3q5y_A           93 ASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTD  172 (240)
T ss_dssp             EEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEC
T ss_pred             EEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecC
Confidence            99732  1    111111111    224555443 344445667899999999998 5656 799999999886532110


Q ss_pred             ---EEEeCCE----EEEEEcCCCCCC-CEEEEEEEEeCCce
Q psy14060        182 ---IHTFSTK----SILIMRQVFMED-SGVFAVIAENRGGK  214 (283)
Q Consensus       182 ---~~~~~~~----~~l~i~~~~~~d-~G~Y~C~a~n~~g~  214 (283)
                         ....+..    +.|.|.....+| .|.|+|.+.|....
T Consensus       173 ~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          173 PQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             SSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence               1122222    248888888888 77999999987543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.64  E-value=2.9e-15  Score=117.49  Aligned_cols=128  Identities=14%  Similarity=0.124  Sum_probs=91.6

Q ss_pred             CCceeecCCCcEEEEEEEeeecC-----CEEEEEeCCEecC---------C------CCCeEEEE---eCCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPL-----PTIKWFREDFPIT---------S------SPDFQIHT---FSTKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~-----~~~~W~k~~~~~~---------~------~~~~~~~~---~~~~~~l~i~~~  196 (283)
                      .....+..|+.+.|.|.+.+.|.     +.+.|+|++..+.         .      ..+..+..   .....+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34567889999999999987663     4899999753321         0      12222221   123457999999


Q ss_pred             CCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeC-CE
Q psy14060        197 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKV-SS  275 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-g~  275 (283)
                      ..+|+|.|+|.+.| .+.....+.|.|....       ..|...   ....+..|+.+.|.|.+.|.|.|.+.|+++ |+
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~-------~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~  156 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPY-------NKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ  156 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCC-------CCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCC-------CCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCc
Confidence            99999999999999 5666667788887521       112211   123678999999999999999999999998 76


Q ss_pred             Eec
Q psy14060        276 LSD  278 (283)
Q Consensus       276 ~l~  278 (283)
                      .+.
T Consensus       157 ~~~  159 (222)
T 3sbw_C          157 VLS  159 (222)
T ss_dssp             EEC
T ss_pred             eec
Confidence            654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.64  E-value=3.6e-16  Score=125.97  Aligned_cols=153  Identities=9%  Similarity=0.038  Sum_probs=95.5

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee---cCC----------------------CEEE--EEcCCEEEEEEccCCCCCCe
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT---ATE----------------------TTEM--EHKGKIQERVVDASELDDDG  110 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~---~~~----------------------~~~~--~~~~~~~~L~i~~~~~~D~G  110 (283)
                      .+.+|++|+|.|.+.+.+... .|..   ...                      +...  .......+|.|.+++.+|+|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG   92 (259)
T 3omz_A           13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSG   92 (259)
T ss_dssp             EEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCE
T ss_pred             EecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCE
Confidence            467788999999998876322 2322   110                      1111  11123457999999999999


Q ss_pred             EEEEEEEecce----eeeeeccCCCC-----------------CCeEEecCCceeecCCCcEEEEEEEeee-cCCEEEEE
Q psy14060        111 YYAITERKYYA----LSDLSEQKPAK-----------------PPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWF  168 (283)
Q Consensus       111 ~Y~C~a~n~~~----~~~~~~~~~~~-----------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~  168 (283)
                      .|.|.+.|..+    ......+.+..                 +|.+...+....+.+|++++|.|.+.+. +.+.+.||
T Consensus        93 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~  172 (259)
T 3omz_A           93 VYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWY  172 (259)
T ss_dssp             EEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEE
T ss_pred             EEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEe
Confidence            99999988643    11111122211                 3456666777889999999999988774 78899999


Q ss_pred             eCCE--ecC------------CCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        169 REDF--PIT------------SSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       169 k~~~--~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      |+..  .+.            ...++.+..  ......|.|.++..+|+|.|+|.+.+.
T Consensus       173 k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          173 KRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             eeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            8531  100            012333321  123456999999999999999999753

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.64  E-value=6.7e-15  Score=115.20  Aligned_cols=157  Identities=9%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee------------------------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT------------------------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~------------------------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.+.+    .+. |..                        ...++.+..  .++..+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           11 LVQPSQTLSLTCTVSGFPLTTNGVS-WVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             EECTTCCEEEEEEECSSCTTSCCEE-EEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eecCCCcEEEEEEECCCcCCCCeEE-EEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            467788999999998753    232 221                        123555543  2356799999999999


Q ss_pred             CeEEEEEEEecce------eeeeeccC--CCCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC
Q psy14060        109 DGYYAITERKYYA------LSDLSEQK--PAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP  178 (283)
Q Consensus       109 ~G~Y~C~a~n~~~------~~~~~~~~--~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~  178 (283)
                      +|.|.|.+.+..+      ......+.  ...+|.+........+..|+.+.|.|.+.|. |.+ .+.|++++..+....
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~  169 (215)
T 1c5d_H           90 TAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHT  169 (215)
T ss_dssp             CEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCB
T ss_pred             CEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEe
Confidence            9999999988631      11111122  1234555443333345789999999999986 777 999999886543211


Q ss_pred             CeEEEEeCCEEEE--EEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        179 DFQIHTFSTKSIL--IMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       179 ~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      ..... .+....+  .+......| |.|+|.+.|..+.....
T Consensus       170 ~~~~~-~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          170 FPAVL-QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             CCCEE-ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCccc-CCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            11111 1122111  122333355 99999999988775543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.64  E-value=2.4e-15  Score=101.55  Aligned_cols=89  Identities=19%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--EecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+...  ..+........|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            677766777888999999999999999999999999999  777554  3344456677899999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy14060        211 RGGKAKCSANLVV  223 (283)
Q Consensus       211 ~~g~~~~~~~l~v  223 (283)
                      ..|.....+.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998888877766

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.64  E-value=9.9e-16  Score=116.69  Aligned_cols=116  Identities=11%  Similarity=0.105  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee---eeeccCC---CCCCeEEecCCceeecCCCcEEEEEEEe
Q psy14060         85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS---DLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFD  158 (283)
Q Consensus        85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~---~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~  158 (283)
                      ..++.+..   ..+|.|.+++.+|+|.|+|.+.|..+..   ....+.+   ..+|.+..        .+..+.|.|.+.
T Consensus        57 ~~R~~~~~---ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~  125 (182)
T 1hnf_A           57 KDTYKLFK---NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVM  125 (182)
T ss_dssp             CTTEEECT---TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECS
T ss_pred             CCeEEECC---CCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEcc
Confidence            34555442   2379999999999999999999986632   1222222   22344432        233689999999


Q ss_pred             eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       159 g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      +.|.+.+.|++++..+ ..       ...  .+.+.. ..+|.|.|+|.|.|..+...+...+.
T Consensus       126 ~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          126 NGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             SCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEECCEEC-CC-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            8899999999999877 21       111  133332 47899999999999999888776653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.64  E-value=3.3e-15  Score=114.97  Aligned_cols=128  Identities=9%  Similarity=0.160  Sum_probs=91.0

Q ss_pred             CCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecC---CC---------------CCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPIT---SS---------------PDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      +..+.+..|+++.|.|.+.+ .+.+.+.|++++..+.   ..               .++.+.   ...+|.|.++..+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCccc
Confidence            45577889999999999875 3457999999876442   10               122222   23569999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC-eEEEEEEEEee-CCCeeEEeeCCEEec
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ-LARFDAKISAT-KPLDVYWLKVSSLSD  278 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~-p~~~v~W~~~g~~l~  278 (283)
                      +|.|.|.+.+..+.....+.|.|....       ..|.+....  ..+..|. .++|.|.+.|. |.|.|.|+++|+.+.
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~-------~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~  152 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQL-------RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS  152 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCC-------EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccC-------CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence            999999999998877667788887521       123333322  2234565 89999999985 478999999998764


Q ss_pred             C
Q psy14060        279 V  279 (283)
Q Consensus       279 ~  279 (283)
                      .
T Consensus       153 ~  153 (193)
T 2if7_A          153 S  153 (193)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.64  E-value=3.7e-15  Score=100.53  Aligned_cols=89  Identities=29%  Similarity=0.389  Sum_probs=77.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.|...+.+..+.+|+.+.|.|.+.+ +.+.+.|+|+|..+....++.+...+..+.|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4778888899999999999999999986 568899999999998888888888888889999999999999999999763


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                          ..++.|.|.+
T Consensus        83 ----~~sa~L~V~~   92 (93)
T 1waa_A           83 ----KSAANLKVKE   92 (93)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----cEEEEEEEEc
Confidence                4567777763

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=2.1e-15  Score=114.82  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=87.4

Q ss_pred             eeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ..+.+|+.+.|.|.+.+.|.|  .+.|+|++..+......     .....|.|.  ..+|+|.|+|.+.|..   .....
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence            467889999999999987776  99999999887654321     123346666  6899999999999832   24456


Q ss_pred             EEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC-CCeeEEee
Q psy14060        221 LVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK-PLDVYWLK  272 (283)
Q Consensus       221 l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~  272 (283)
                      |.|.          .+|.+...+....+.+|+.+.|.|.+.|.| .|.+.|++
T Consensus        78 l~V~----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~  120 (184)
T 3b5h_A           78 IQLH----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYK  120 (184)
T ss_dssp             EEEC----------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEE
T ss_pred             EEEe----------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEE
Confidence            6665          467787777777899999999999999999 78999999

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.64  E-value=7e-16  Score=120.10  Aligned_cols=135  Identities=11%  Similarity=0.061  Sum_probs=90.8

Q ss_pred             EEecCCcee-ecCCCcEEEEEEEeeec---C-CEEEEEeCCEecCCCCC-eEEEEeC----CEEEEEEcCCCCCCCEEEE
Q psy14060        136 FTKKIQPCR-AFEQDQARFEVEFDGDP---L-PTIKWFREDFPITSSPD-FQIHTFS----TKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       136 ~~~~~~~~~-~~~g~~v~l~C~~~g~p---~-~~~~W~k~~~~~~~~~~-~~~~~~~----~~~~l~i~~~~~~d~G~Y~  205 (283)
                      ++..+.... +..|+++.|.|.+.|.+   . ..+.|+|++..+..... ......+    ....|.|.++..+|.|.|+
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence            344445444 78999999999999874   2 48999999977643110 0000011    1246999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEE--EeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEec
Q psy14060        206 VIAENRGGKAKCSANLVV--EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSD  278 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v--~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~  278 (283)
                      |.+.|..+.......+.+  ...        .+|.+...+.......|+.+.|.|.+.|. |.+ .+.|++||+.+.
T Consensus        85 C~a~~~~~~~~~~~~v~~~~~~~--------~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTKGRP--------KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCCCCC--------BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             EEEEccCCCCceEEEeccCCCCC--------cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence            999998875422222221  111        46776554433333469999999999985 443 899999999875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.64  E-value=3.6e-16  Score=122.25  Aligned_cols=126  Identities=10%  Similarity=0.001  Sum_probs=89.0

Q ss_pred             CCceeecCC--CcEEEEEEEeeecCCEEEEEeC---CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        140 IQPCRAFEQ--DQARFEVEFDGDPLPTIKWFRE---DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       140 ~~~~~~~~g--~~v~l~C~~~g~p~~~~~W~k~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|+++   +..+.....+...   ....|.|.++..+|+|.|+|.|.|..+.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECCee
Confidence            456788899  99999999987 8899999884   6665554333322   1235999999999999999999985444


Q ss_pred             eEEE-EEEEEEeccCCCCCCCCCCeEEecCC-ceEEcCCCeEEEEEEEEeeCC--CeeEEeeCCEEe
Q psy14060        215 AKCS-ANLVVEEKRQGGRGGVVPPSFLTTIS-SAVINVGQLARFDAKISATKP--LDVYWLKVSSLS  277 (283)
Q Consensus       215 ~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~-~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~g~~l  277 (283)
                      ..+. ..|.|...        .+|.+...+. ...+.+|+.++|.|.+.|.|.  +.+.|+++|+.+
T Consensus        90 ~~s~~~~l~v~~~--------~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~  148 (213)
T 2x1w_L           90 YQSIMYIVVVVGY--------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH  148 (213)
T ss_dssp             EECCCEEEEECBC--------CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSC
T ss_pred             EEEEEEEEEEeCC--------cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCcc
Confidence            3332 55555431        2444544444 448999999999999998654  479999998753

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.64  E-value=4.1e-15  Score=120.01  Aligned_cols=155  Identities=9%  Similarity=0.072  Sum_probs=99.0

Q ss_pred             eeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      +.+|++++|.|.+.+.+    .+. |..                         ...|+.+..+  .....|.|.+++.+|
T Consensus        18 v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   96 (261)
T 2xqy_G           18 VKPGASVKMSCKASGYSFTSYWMN-WVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSED   96 (261)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEE-EEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEeCCcccCCceEE-EEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCccc
Confidence            66788999999998764    222 211                         1235555432  356899999999999


Q ss_pred             CeEEEEEEEecce----eeeeeccCC----CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC
Q psy14060        109 DGYYAITERKYYA----LSDLSEQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP  178 (283)
Q Consensus       109 ~G~Y~C~a~n~~~----~~~~~~~~~----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~  178 (283)
                      +|.|.|.+.+..+    ......+.+    ..+|.+........+..|+.++|.|.+.+. |.+ .+.|++++..+....
T Consensus        97 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~  176 (261)
T 2xqy_G           97 SAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT  176 (261)
T ss_dssp             CEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE
T ss_pred             CeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEe
Confidence            9999999988531    111112222    234555443333346779999999999885 766 999999987643110


Q ss_pred             CeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        179 DFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       179 ~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ...+...+   ..+.|.|.....+| |.|+|.+.|......
T Consensus       177 ~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~  216 (261)
T 2xqy_G          177 FPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  216 (261)
T ss_dssp             CCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             cCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence            00011111   13468998888878 999999999765533

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.64  E-value=5.3e-15  Score=100.93  Aligned_cols=94  Identities=22%  Similarity=0.407  Sum_probs=80.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC-eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..... +.....+...+|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            467788888888999999999999999999999999999998876543 3444444556899999999999999999999


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999998888888764

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.63  E-value=6.3e-16  Score=120.37  Aligned_cols=154  Identities=11%  Similarity=0.061  Sum_probs=99.2

Q ss_pred             eeecCcEEEEEEEccCc---c-ce-EEeecCCCEE-------EEEcC----CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGDK---E-IV-RKITATETTE-------MEHKG----KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~-i~-~~~~~~~~~~-------~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.+|++++|.|.+.|.+   . +. .|...+....       ....+    ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            66789999999999873   2 22 4433221110       00111    13579999999999999999999987632


Q ss_pred             ---eeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEeCC---EEEE
Q psy14060        124 ---DLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTFST---KSIL  191 (283)
Q Consensus       124 ---~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l  191 (283)
                         ....+  .+..+|.+...+.......|+.+.|.|.+.|. |. +.++|+|+|..+.....  ......+.   .+.|
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l  174 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKL  174 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEE
Confidence               22222  45567877655444333468999999999985 54 48999999998753211  11111111   1246


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCc
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .|.....+|.|.|+|.+.|...
T Consensus       175 ~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          175 NVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEEHHHHSSCCEEEEEEECTTS
T ss_pred             EECHHHcCCCCEEEEEEECCCC
Confidence            6666656789999999999864

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.63  E-value=2.5e-16  Score=131.05  Aligned_cols=192  Identities=11%  Similarity=0.065  Sum_probs=115.2

Q ss_pred             cceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCC--eeeecCcEEEEEEEccC-c-c--ce-EEeecCCC----
Q psy14060         19 ILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGK--EIHTAKSQQVQKEKKGD-K-E--IV-RKITATET----   87 (283)
Q Consensus        19 ~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~--~v~~g~~v~l~C~~~g~-~-~--i~-~~~~~~~~----   87 (283)
                      =.+.|.|+|..|.....+.+.+   ......|.+......  .+.+|+.+.|.|.+.|. | .  +. .|......    
T Consensus        85 g~Y~C~a~n~~~~~~~~~~~~~---~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~  161 (323)
T 2wqr_A           85 RTYTCQVTYQGHTFEDSTKKCA---DSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH  161 (323)
T ss_dssp             CCEEEEEEETTEEEEEEECCCC---CSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred             CcEEEEEEeCCCCcceeeecCC---CCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence            3567888888776543322101   011112222221111  25678899999999885 3 2  13 44432211    


Q ss_pred             ---EEEEE-cC---CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC----CCCCCeEEecCCceeecCCCcEEEEE
Q psy14060         88 ---TEMEH-KG---KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK----PAKPPVFTKKIQPCRAFEQDQARFEV  155 (283)
Q Consensus        88 ---~~~~~-~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C  155 (283)
                         ..... .+   ....|.|.+++.+|+|.|+|.+.|.... .....+.    +..+|.+...+.......|+.+.|.|
T Consensus       162 ~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C  241 (323)
T 2wqr_A          162 STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLAC  241 (323)
T ss_dssp             CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEE
T ss_pred             ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEE
Confidence               11001 11   2457999999999999999999998642 1111221    33566655433332223499999999


Q ss_pred             EEeee-cCC-EEEEEeCCEecCCCCCeEE----EEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        156 EFDGD-PLP-TIKWFREDFPITSSPDFQI----HTFS----TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       156 ~~~g~-p~~-~~~W~k~~~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+.|. |.+ .+.|+|++..+.... +..    ...+    ..+.|.|..+..+|.|.|+|.|.|....
T Consensus       242 ~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          242 LIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            99985 443 899999999876431 111    0111    1346899999999999999999998765

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.63  E-value=4.5e-15  Score=120.71  Aligned_cols=141  Identities=14%  Similarity=0.186  Sum_probs=98.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE-----ec---------CCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-----PI---------TSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|||++.     .+         ....++.+...+...+|.|.++..
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4456666778889999999999999998889999998642     11         113466666666677899999999


Q ss_pred             CCCEEEEEEEEeCCce-eEEEEEEEEEeccCC---CCC-CCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCeeEEe
Q psy14060        199 EDSGVFAVIAENRGGK-AKCSANLVVEEKRQG---GRG-GVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWL  271 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~---~~~-~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~  271 (283)
                      +|+|.|.|.+.|..+. ......|.|......   ... ...++.+...+....+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            9999999999987543 222345555532100   000 00123334445678899999999999999876  4789999


Q ss_pred             eC
Q psy14060        272 KV  273 (283)
Q Consensus       272 ~~  273 (283)
                      ++
T Consensus       172 k~  173 (276)
T 3auv_A          172 RQ  173 (276)
T ss_dssp             EE
T ss_pred             Ec
Confidence            96

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.63  E-value=2.8e-15  Score=119.95  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=95.3

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE-----e---------cCCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-----P---------ITSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~-----~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|+..     .         .....++.........+|.|.++..+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            34455666788999999999999998999999998531     1         111345666666677789999999999


Q ss_pred             CEEEEEEEEeCCceeE-EEEEEEEEeccC---------CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCee
Q psy14060        201 SGVFAVIAENRGGKAK-CSANLVVEEKRQ---------GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDV  268 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~---------~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v  268 (283)
                      +|.|.|.+.|..+... ....|.|.....         .......++.++..+....+.+|+.++|.|.+.+.|  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            9999999998765422 224555543100         000000123444455667899999999999998876  6789


Q ss_pred             EEeeC
Q psy14060        269 YWLKV  273 (283)
Q Consensus       269 ~W~~~  273 (283)
                      .|+++
T Consensus       166 ~W~k~  170 (250)
T 3esu_F          166 NWVKQ  170 (250)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.63  E-value=7e-16  Score=117.43  Aligned_cols=139  Identities=12%  Similarity=0.059  Sum_probs=91.1

Q ss_pred             eeeecCcEEEEEEEccC---ccceEEeec---------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGD---KEIVRKITA---------------------TETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~---~~i~~~~~~---------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      .+.+|++|+|.|.+.+.   +.| .|...                     ..|+.+.  ....+|.|.+++.+|+|.|+|
T Consensus        10 ~v~~G~~vtL~c~~~~~~~~~~i-~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~--~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A           10 NAITGSNVTLTILKHPLASYQRL-TWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD--KTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             EEETTSCEEECCCSSCCCSCSEE-EEESSSSCEEEEECSSSCEEECSSTTTTTEEEC--TTTCCEEECSCCGGGCEEEEE
T ss_pred             EEEeCCCEEEeCCCCCCCceeEE-EEEecCCeEEEEEECCCCeeEcchhcCCeEEEe--CCCccEEEcCCCHHHCeEEEE
Confidence            36778899999988542   233 22221                     0233331  234579999999999999999


Q ss_pred             EEEecceeeeeeccCC---CCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEE
Q psy14060        115 TERKYYALSDLSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI  190 (283)
Q Consensus       115 ~a~n~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~  190 (283)
                      .+.+.........+.+   ...|.+..        .+..+.|.|.+ .+ |.|.+.|++++..+..       .  ...+
T Consensus        87 ~v~~~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-------~--~~~~  148 (180)
T 2dru_A           87 RMLHETEDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-------L--RQKT  148 (180)
T ss_dssp             EEESSSEEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-------E--SSSE
T ss_pred             EEEcCCeEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-------C--CCCE
Confidence            9877652222222222   22343332        23569999999 66 9999999999987641       1  1224


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      |.+..  .+|+|.|+|.|.|..+.......
T Consensus       149 l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          149 MSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             EEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEE--hhcCccEEEEEecCcCcccccee
Confidence            55533  78999999999999988765543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.63  E-value=3.6e-15  Score=119.97  Aligned_cols=129  Identities=12%  Similarity=0.100  Sum_probs=96.7

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec---C--------------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI---T--------------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~---~--------------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+..|++++|.|.+.+.|  .+.+.|+|++  ..+   .              ...++.+...  ....+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            45567899999999999998865  6799999842  111   0              1245555543  3467899999


Q ss_pred             CCCCCCEEEEEEEEeCCce-----eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC----
Q psy14060        196 VFMEDSGVFAVIAENRGGK-----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL----  266 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~----  266 (283)
                      +..+|+|.|.|.+.|..|.     ......|.|..          +|.+...+....+.+|++++|.|.+.+.|.+    
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~----------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  155 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS----------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGN  155 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC----------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSC
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecc----------cccEEecCcEEEEecCCcEEEEeEecCcccccccc
Confidence            9999999999999998652     12234566653          5667667777889999999999999988765    


Q ss_pred             -eeEEee--CCEEe
Q psy14060        267 -DVYWLK--VSSLS  277 (283)
Q Consensus       267 -~v~W~~--~g~~l  277 (283)
                       .+.|+|  +|+.+
T Consensus       156 ~~v~W~k~~~g~~~  169 (256)
T 1nqb_A          156 TYLEWYLQKPGQSP  169 (256)
T ss_dssp             BCEEEEEECTTSCE
T ss_pred             eEEEEEEECCCCCc
Confidence             899999  66543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.63  E-value=1.6e-15  Score=120.50  Aligned_cols=129  Identities=12%  Similarity=0.151  Sum_probs=92.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec---------------CCCCCeEEEE-eCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI---------------TSSPDFQIHT-FSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~---------------~~~~~~~~~~-~~~~~~l~i~~~~  197 (283)
                      +...+..+.+.+|++++|.|. .+.|.+.+.|+|+.  ..+               ....++.+.. .....+|.|.++.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            445567788999999999999 67788999999951  110               0123444443 2235579999999


Q ss_pred             CCCCEEEEEEEEeCCcee-----EEEEEEEEEeccCCCCCCCCCC-----------eEEecCCceEEcCCCeEEEEEEEE
Q psy14060        198 MEDSGVFAVIAENRGGKA-----KCSANLVVEEKRQGGRGGVVPP-----------SFLTTISSAVINVGQLARFDAKIS  261 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~~~~~p-----------~~~~~~~~~~v~~g~~v~L~C~~~  261 (283)
                      .+|+|.|.|.+.|..+..     .....|.|...         ++           .+...+....+.+|+.++|.|.+.
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~---------~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  152 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGS---------ADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYE  152 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECC---------CHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECC
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEecc---------CCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEe
Confidence            999999999999876521     12346666642         22           556666777899999999999999


Q ss_pred             eeCCCeeEEeeCC
Q psy14060        262 ATKPLDVYWLKVS  274 (283)
Q Consensus       262 g~p~~~v~W~~~g  274 (283)
                      +.|.+.+.|++++
T Consensus       153 ~~p~~~i~W~k~~  165 (238)
T 2p1y_A          153 NSAFDYFPWYQQF  165 (238)
T ss_dssp             CTTCCEEEEEEEC
T ss_pred             cCCCCcEEEEEEC
Confidence            9999999999963

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.63  E-value=1.2e-14  Score=107.58  Aligned_cols=101  Identities=35%  Similarity=0.593  Sum_probs=87.7

Q ss_pred             eeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEE
Q psy14060        125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQVFMEDSGV  203 (283)
Q Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~  203 (283)
                      ...+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+... .....|.|.++..+|+|.
T Consensus        33 ~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             -CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             hhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEE
Confidence            3455666789999888889999999999999999999999999999999987777766543 335689999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEEe
Q psy14060        204 FAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |+|.|.|..|.....+.|.|..
T Consensus       113 Y~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          113 YTCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCeEEEEEEEEEeC
Confidence            9999999999998889999885

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.63  E-value=4.9e-16  Score=117.27  Aligned_cols=139  Identities=9%  Similarity=-0.014  Sum_probs=91.4

Q ss_pred             eeecCcEEEEEEEccCc-cceEEeec------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIVRKITA------------------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~~~~~~------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +.+|++|+|.|.+.+.. .|. |...                  .+++.+.  ....+|.|.+++.+|+|.|.|.+.|..
T Consensus         7 ~~~G~~VtL~c~~~~~~~~i~-W~~~~~~i~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            7 GVVYGNVTFHVPSNVPLKEVL-WKKQKDKVAELENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EETTCCEEECCCCSSCCSCEE-EEETTEEEEEEETTEEEECGGGTTSEEEC--TTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEcCCCEEEcCCCCCCcceEE-EEeCCcEEEEEcCCCcccccccCCcEEEe--CCCCeEEECCCChhhCceEEEEEeCCC
Confidence            56788999999885422 332 2211                  1233322  133579999999999999999998876


Q ss_pred             eeeeeeccCCC---CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC
Q psy14060        121 ALSDLSEQKPA---KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF  197 (283)
Q Consensus       121 ~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~  197 (283)
                      + .....+.+.   ..|.+.....        ...|.|.+.+.|.|.+.|++++..+.....         ..+.+.  .
T Consensus        84 ~-~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~~--~  143 (171)
T 1ccz_A           84 D-TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQ--W  143 (171)
T ss_dssp             S-CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEEE--C
T ss_pred             C-cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEEe--c
Confidence            6 222223332   2344432221        127999999889999999999988753222         123333  3


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      ..|.|.|+|.|.|..+.....+.|
T Consensus       144 ~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          144 TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cCCCceEEEEEEcccCcccceeEE
Confidence            678999999999999987766554

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.62  E-value=4.5e-15  Score=101.51  Aligned_cols=94  Identities=26%  Similarity=0.393  Sum_probs=79.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....... .........|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            36666667778889999999999999999999999999999887654332 33344556899999999999999999999


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999988888888875

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=103.97  Aligned_cols=90  Identities=12%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.|...+.+..+..|+.+.|.|.+  .|.+.+.|+|+|..+....++.+...+..+.|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            36777788888999999999999999  6889999999999998888888888888889999999999999999999997


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                        ....++.|.|..
T Consensus        84 --~~~~~a~L~V~~   95 (100)
T 2yuz_A           84 --NVTLPAKVHVIS   95 (100)
T ss_dssp             --CCCEEEEEEEEC
T ss_pred             --CeeEEEEEEEeC
Confidence              556678888875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.62  E-value=3.4e-15  Score=117.37  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=93.5

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c----------------CCCCCeEEEEe--CCEEEEEEc
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I----------------TSSPDFQIHTF--STKSILIMR  194 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~----------------~~~~~~~~~~~--~~~~~l~i~  194 (283)
                      +....+..|+++.|.|.+.+.+  .+.+.|||+.  ..   +                ....++.+...  ....+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4456788999999999998754  6789999853  11   1                00235555543  345689999


Q ss_pred             CCCCCCCEEEEEEEEeCCc-----eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-e
Q psy14060        195 QVFMEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-D  267 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~  267 (283)
                      ++..+|+|.|.|.+.|..+     .......|.|....      ..+|.+........+..|+.++|.|.+.|. |.| .
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  160 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  160 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC------CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC------CCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence            9999999999999998754     22223456665311      135666554433346789999999999986 888 9


Q ss_pred             eEEeeCCEEe
Q psy14060        268 VYWLKVSSLS  277 (283)
Q Consensus       268 v~W~~~g~~l  277 (283)
                      +.|+++|+.+
T Consensus       161 v~W~~~g~~~  170 (222)
T 1q9r_B          161 VTWNSGSLSS  170 (222)
T ss_dssp             EEEGGGTBCT
T ss_pred             EEEecCCeEc
Confidence            9999999765

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.62  E-value=4.1e-15  Score=118.87  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCE-----EEEEeCCEecCCC--------CCe-------EEE---EeCCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPT-----IKWFREDFPITSS--------PDF-------QIH---TFSTKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~-----~~W~k~~~~~~~~--------~~~-------~~~---~~~~~~~l~i~~  195 (283)
                      .+....+..|+++.|.|.+.+.|.+.     +.|++++......        ...       .+.   ......+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34456788999999999999877765     9999964322110        000       000   001233599999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-eeEEeeC
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKV  273 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~  273 (283)
                      +..+|+|.|+|.+.+..+.......|.|..          +|.+...+. ..+..|+.+.|.|.+.| .|.| .+.|++|
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~----------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~  157 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVA----------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQ  157 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEB----------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEec----------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEEC
Confidence            999999999999999988877788888875          566665544 33556778889999998 7888 9999999


Q ss_pred             CEE
Q psy14060        274 SSL  276 (283)
Q Consensus       274 g~~  276 (283)
                      |+.
T Consensus       158 g~~  160 (248)
T 3pv7_A          158 TQK  160 (248)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            953

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.62  E-value=1.8e-14  Score=113.53  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             CceeecCCCcEEEEEEEeeecCC---EEEEEeCCEec-----------CC------CCCeEEEE---eCCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLP---TIKWFREDFPI-----------TS------SPDFQIHT---FSTKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~---~~~W~k~~~~~-----------~~------~~~~~~~~---~~~~~~l~i~~~~  197 (283)
                      .++.+..|+++.|.|.+.+.+.+   .+.|+|++...           ..      ..+.....   .....+|.|.++.
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            45678899999999999875544   79999876321           10      01222211   1235689999999


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCCeeEEeeCC
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVS  274 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g  274 (283)
                      .+|+|.|+|.+.|..+.......+.+...            +........+.+|+.+.|.|.+.| .|.|.|+|++++
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~------------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~  157 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAAL------------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK  157 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBC------------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccc------------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence            99999999999999887776655554431            111223456788999999999988 599999999854

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.62  E-value=5.2e-15  Score=117.98  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=94.3

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|+|+.  .   .+         ....++.+.......+|.|.++..+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            3455667788999999999999999888999999853  1   11         01345666555667789999999999


Q ss_pred             CEEEEEEEEeCCcee-EEEEEEEEEeccCCC---CCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCeeEEeeC
Q psy14060        201 SGVFAVIAENRGGKA-KCSANLVVEEKRQGG---RGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWLKV  273 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~---~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~  273 (283)
                      +|.|.|.+.|..+.. .....|.|.......   .....++.++..+....+.+|++++|.|.+.+.|  .+.+.|+++
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            999999999875432 123456665321000   0000112233333445689999999999999875  468999984

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.62  E-value=1.8e-15  Score=117.83  Aligned_cols=131  Identities=14%  Similarity=0.150  Sum_probs=92.5

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--EecC----------------CCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT----------------SSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      +....+..|+++.|.|.+.+.+  .+.+.|+|++  ....                ...++.+...  ....+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            4556889999999999998864  4889999852  1110                1245555542  235689999999


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCE
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSS  275 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~  275 (283)
                      .+|+|.|.|.+.|.. .......|.|....      ..+|.+...+....+..|+.+.|.|.+.|. |.| .+.|+++|.
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  159 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  159 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCC------CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCC------CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCc
Confidence            999999999998863 11122455554310      135666544433456789999999999987 888 999999997


Q ss_pred             Ee
Q psy14060        276 LS  277 (283)
Q Consensus       276 ~l  277 (283)
                      .+
T Consensus       160 ~~  161 (210)
T 3d9a_H          160 SS  161 (210)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.62  E-value=2.9e-15  Score=120.57  Aligned_cols=156  Identities=9%  Similarity=0.064  Sum_probs=86.2

Q ss_pred             eeeecCcEEEEEEEccCc----cceEEee-------------------------cCCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIVRKIT-------------------------ATETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~~~~~-------------------------~~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.+    .+. |..                         ...|+.+..+  .+...|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (257)
T 3bn9_D           11 LVKPGGSLRLSCAASGFTFSSYAMS-WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE   89 (257)
T ss_dssp             EECTTCEEEEEEEEESSCGGGCCEE-EEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             EEcCCCcEEEEEEeccccCCCceEE-EEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            366788999999998753    222 111                         1245555432  45789999999999


Q ss_pred             CCeEEEEEEEecce--------------eeeeeccCCC----CCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEE
Q psy14060        108 DDGYYAITERKYYA--------------LSDLSEQKPA----KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKW  167 (283)
Q Consensus       108 D~G~Y~C~a~n~~~--------------~~~~~~~~~~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W  167 (283)
                      |+|.|.|.+.+..+              ......+.+.    .+|.+........+..|+.++|.|.+.+. |.+ .++|
T Consensus        90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W  169 (257)
T 3bn9_D           90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  169 (257)
T ss_dssp             GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEE
T ss_pred             hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEE
Confidence            99999999987642              0111122222    34554433323345678999999999986 777 9999


Q ss_pred             EeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        168 FREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       168 ~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ++++..+.......+...+.    .+.|.|......| |.|+|.+.|......
T Consensus       170 ~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          170 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             TTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             eeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            99987642110000111111    2357777777777 999999999765443

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=2.1e-14  Score=97.56  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=79.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ...+.+..+..|+.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++..+|+|.|+|.+.|..|..
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   84 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED   84 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence            345667889999999999999997 8999999999999988778888777777899999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy14060        216 KCSANLVVEE  225 (283)
Q Consensus       216 ~~~~~l~v~~  225 (283)
                      ...+.|.|.+
T Consensus        85 ~~~~~l~V~~   94 (97)
T 2bk8_A           85 SSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEEEEEe
Confidence            8888888764

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.62  E-value=2.5e-15  Score=116.18  Aligned_cols=126  Identities=13%  Similarity=0.149  Sum_probs=90.9

Q ss_pred             ceeecCCCcEEEEEEEe----eecCCEEEEEeCCEecCC------------CCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        142 PCRAFEQDQARFEVEFD----GDPLPTIKWFREDFPITS------------SPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~----g~p~~~~~W~k~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      .+.+..|+++.|.|.+.    +.|.+.+.|++++..+..            ..+..+ ......+|.|.++..+|+|.|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEE
Confidence            46788999999999985    447789999999887521            112222 1123357999999999999999


Q ss_pred             EEEEeCCcee-----EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-eeCCCeeEEeeCCEEecC
Q psy14060        206 VIAENRGGKA-----KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       206 C~a~n~~g~~-----~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~l~~  279 (283)
                      |.+.|..|..     ...+.|.|....       ..|.+...    ....|+.+.|.|.+. |.|.|.|+|++||+.+..
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~-------~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~  150 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADF-------PTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNA  150 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCC-------CCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCC-------CCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECcc
Confidence            9999976543     345666666421       12443321    224588999999995 899999999999998864

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.62  E-value=5.2e-16  Score=121.86  Aligned_cols=155  Identities=10%  Similarity=0.060  Sum_probs=97.6

Q ss_pred             eeecCcEEEEEEEccC---cc-ce-EEeecCCCE-------EEEEcC----CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGD---KE-IV-RKITATETT-------EMEHKG----KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~---~~-i~-~~~~~~~~~-------~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.+|+.++|.|.+.|.   |. +. .|...+...       .....+    ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            5678999999999986   32 32 343322111       000011    23579999999999999999999986522


Q ss_pred             ---eeec--cCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCeEEEEe-CC----EEEE
Q psy14060        124 ---DLSE--QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDFQIHTF-ST----KSIL  191 (283)
Q Consensus       124 ---~~~~--~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~~~~~~-~~----~~~l  191 (283)
                         ....  +.+..+|.+...+.......|+.+.|.|.+.| +|.+ .++|+|++..+........... +.    ...|
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  182 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKL  182 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEE
Confidence               1111  24456777655444333345899999999998 5665 9999999988743211111111 11    1235


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCce
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .|.....+|.|.|+|.+.|....
T Consensus       183 ~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          183 NMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EECHHHcCCCCeEEEEEEcCCCC
Confidence            55544445689999999997643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.62  E-value=4.8e-15  Score=118.22  Aligned_cols=155  Identities=12%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee---------------------c---CCCEEEEEc-CCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT---------------------A---TETTEMEHK-GKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~---------------------~---~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.| ..+.+... .|..                     .   ..++.+... ....+|.|.+++.+|+|.|
T Consensus        13 ~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y   91 (245)
T 4ei6_B           13 IIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVY   91 (245)
T ss_dssp             EEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEE
T ss_pred             EecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEE
Confidence            467789999999 55555211 2221                     0   155555432 3467999999999999999


Q ss_pred             EEEEEecc-----eeeeeeccCC------CCCCeEE-ecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC
Q psy14060        113 AITERKYY-----ALSDLSEQKP------AKPPVFT-KKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP  178 (283)
Q Consensus       113 ~C~a~n~~-----~~~~~~~~~~------~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~  178 (283)
                      .|.+.+..     .......+.+      ..+|.+. ..+....+..|+.+.|.|.+.|. |.+ .+.|+++|..+....
T Consensus        92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~  171 (245)
T 4ei6_B           92 FCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV  171 (245)
T ss_dssp             EEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             EEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCc
Confidence            99998531     1111111111      1355443 33444456678999999999885 445 899999998876421


Q ss_pred             CeEE---E-----EeCC---EEEEEEcCCCCCC-CEEEEEEEEeCCce
Q psy14060        179 DFQI---H-----TFST---KSILIMRQVFMED-SGVFAVIAENRGGK  214 (283)
Q Consensus       179 ~~~~---~-----~~~~---~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  214 (283)
                      ....   .     ..+.   ...|.|.....+| .|.|+|.+.|....
T Consensus       172 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          172 CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            1100   0     0011   1347888777777 89999999987543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.61  E-value=7.2e-15  Score=117.21  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=95.2

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe--------------CCEecCC----CCCeEEEEe-CCEEEEEEcC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR--------------EDFPITS----SPDFQIHTF-STKSILIMRQ  195 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k--------------~~~~~~~----~~~~~~~~~-~~~~~l~i~~  195 (283)
                      .+...+....+..|+++.|.| ..+.+.+.+.|||              ++.....    ..++.+... ....+|.|.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence            445566778899999999999 6677889999998              2221111    145554432 3356899999


Q ss_pred             CCCCCCEEEEEEEEeCC----ceeEEEEEEEEEeccCCCCCCCCCCeEE-ecCCceEEcCCCeEEEEEEEEee-CCC-ee
Q psy14060        196 VFMEDSGVFAVIAENRG----GKAKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARFDAKISAT-KPL-DV  268 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~----g~~~~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v  268 (283)
                      +..+|+|.|.|.+.+..    ........|.|.....    ...+|.+. ..+....+..|+.++|.|.+.|. |.+ .+
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  158 (245)
T 4ei6_B           83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK----NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  158 (245)
T ss_dssp             CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccC----CCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEE
Confidence            99999999999998532    2233335666663100    00245444 33444456779999999999985 444 79


Q ss_pred             EEeeCCEEecC
Q psy14060        269 YWLKVSSLSDV  279 (283)
Q Consensus       269 ~W~~~g~~l~~  279 (283)
                      .|++||+.+..
T Consensus       159 ~W~~~g~~l~~  169 (245)
T 4ei6_B          159 SWWVNGKEVHS  169 (245)
T ss_dssp             EEEETTEEECT
T ss_pred             EEEECCEECCC
Confidence            99999999864

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.61  E-value=7.4e-16  Score=117.95  Aligned_cols=121  Identities=11%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             eecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcC-CCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        144 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ-VFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      ....|+++.|.|.+.+ +.+ +.|+|++..+....         ..+|.|.+ +..+|+|.|+|.|.|..|.......+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~~-i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DEN-LKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CTT-CEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CCc-eEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            4467999999999987 444 99999999887531         12599999 999999999999999988855555554


Q ss_pred             EEeccCCCCCC--------CCCCeEE----ecCCce---EEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        223 VEEKRQGGRGG--------VVPPSFL----TTISSA---VINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       223 v~~~~~~~~~~--------~~~p~~~----~~~~~~---~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      |..........        ..+|.+.    ......   .+.+|+.+.|.|.+   |.|.|.|+|||+.+.
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~  146 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS  146 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECc
Confidence            44321110000        0011110    000112   24499999999998   889999999999986

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.2e-14  Score=116.82  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=99.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee-------------------------cCCCEEEEE-cCCEEEEEEccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT-------------------------ATETTEMEH-KGKIQERVVDASELDDDGY  111 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~-------------------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+.+|++++|.|.+.+.+... .|..                         ...|+.+.. .....+|.|.+++.+|+|.
T Consensus        35 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~  114 (279)
T 2wbj_D           35 ISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSF  114 (279)
T ss_dssp             EEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEE
T ss_pred             EecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEE
Confidence            467788999999998766222 2211                         124555544 2457899999999999999


Q ss_pred             EEEEEEecc---------eeeeeeccCC----CCCCeEEec-CCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecC
Q psy14060        112 YAITERKYY---------ALSDLSEQKP----AKPPVFTKK-IQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPIT  175 (283)
Q Consensus       112 Y~C~a~n~~---------~~~~~~~~~~----~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~  175 (283)
                      |+|.+.|..         +......+..    ..+|.+... +....+..|+.+.|.|.+.+. |. +.+.|++++..+.
T Consensus       115 Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~  194 (279)
T 2wbj_D          115 YICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  194 (279)
T ss_dssp             EEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             EEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            999999831         1111111111    235655432 333345578899999999987 43 6999999998875


Q ss_pred             CCCCeE---EE-----EeCC---EEEEEEcCCCCCC-CEEEEEEEEeCCce
Q psy14060        176 SSPDFQ---IH-----TFST---KSILIMRQVFMED-SGVFAVIAENRGGK  214 (283)
Q Consensus       176 ~~~~~~---~~-----~~~~---~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  214 (283)
                      ......   ..     ..+.   .+.|.|......| .|.|+|.+.|....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          195 SGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             TTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             CCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            431100   00     0111   2347787777654 67899999997654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=120.67  Aligned_cols=155  Identities=11%  Similarity=0.077  Sum_probs=98.2

Q ss_pred             eeeecCcEEEEEEEccCc-cceEEeec------------------------CCCEEEEE-cCCEEEEEEccCCCCCCeEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVRKITA------------------------TETTEMEH-KGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~~~~~------------------------~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      .+.+|++++|.|.+.... .+ .|...                        ..++.+.. ..+..+|.|.+++.+|+|.|
T Consensus        37 ~v~~G~~v~L~C~~~~~~~~v-~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y  115 (268)
T 3pl6_D           37 VTEKGKYVELRCDPISGHTAL-YWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVY  115 (268)
T ss_dssp             EEETTCCEEEEEBCBTTCCEE-EEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEE
T ss_pred             EecCCCCEEEEEEeCCCCceE-EEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEE
Confidence            367788999999986432 22 22210                        05555553 23468899999999999999


Q ss_pred             EEEEEec--ce-eeeeeccC------CCCCCeEEe-cCCceeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCe
Q psy14060        113 AITERKY--YA-LSDLSEQK------PAKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDF  180 (283)
Q Consensus       113 ~C~a~n~--~~-~~~~~~~~------~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~  180 (283)
                      +|.+.+.  .. ......+.      ...+|.+.. .+....+..|+.++|.|.+.+.+++  .+.|+++|..+......
T Consensus       116 ~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~  195 (268)
T 3pl6_D          116 LCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCT  195 (268)
T ss_dssp             EEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEE
T ss_pred             EEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEe
Confidence            9999873  11 11111111      222555433 3444456668999999999986554  89999999887542110


Q ss_pred             EE--E------EeCC---EEEEEEcCCCCCC-CEEEEEEEEeCCce
Q psy14060        181 QI--H------TFST---KSILIMRQVFMED-SGVFAVIAENRGGK  214 (283)
Q Consensus       181 ~~--~------~~~~---~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  214 (283)
                      ..  .      ..+.   .+.|.|.....+| .|.|+|.+.|....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          196 DPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             CSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            00  0      0001   1347777777777 99999999987543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.61  E-value=9.3e-15  Score=116.73  Aligned_cols=138  Identities=15%  Similarity=0.173  Sum_probs=93.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec-----CCEEEEEeCC--Ee---cC---------CCCCeEEEEeCCEEEEEEcCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRED--FP---IT---------SSPDFQIHTFSTKSILIMRQV  196 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p-----~~~~~W~k~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~~  196 (283)
                      +...+..+.+..|++++|.|.+.+.|     .+.+.|+|+.  ..   +.         ...++.+.......+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            45556778899999999999999877     6889999842  11   10         134566665666778999999


Q ss_pred             CCCCCEEEEEEEEeCCcee-EEEEEEEEEeccCC---CCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCeeEE
Q psy14060        197 FMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQG---GRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYW  270 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~---~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W  270 (283)
                      ..+|+|.|.|.+.|..+.. .....|.|......   ......++.....+....+.+|++++|.|.+.+.+  .+.+.|
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence            9999999999999875532 22345666542100   00000123333344455699999999999999875  468999


Q ss_pred             eeC
Q psy14060        271 LKV  273 (283)
Q Consensus       271 ~~~  273 (283)
                      +++
T Consensus       164 ~k~  166 (247)
T 1svz_A          164 VKQ  166 (247)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            996

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.61  E-value=2.3e-15  Score=121.18  Aligned_cols=138  Identities=15%  Similarity=0.186  Sum_probs=94.1

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---cC-------------CCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---IT-------------SSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|++  ..   +.             ...++.+...  ....+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            3456789999999999999875  6889999852  11   10             1245655543  456789999999


Q ss_pred             CCCCEEEEEEEEeCCc-------ee--EEEEEEEEEeccCCC-----CCCCCCCeEEecCCceEEcCCCeEEEEEEEEee
Q psy14060        198 MEDSGVFAVIAENRGG-------KA--KCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g-------~~--~~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~  263 (283)
                      .+|+|.|.|.+.|..|       ..  .....|.|.......     .....++.+...+....+.+|++++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999999854       11  123466665421000     000011234444556678999999999999998


Q ss_pred             CCCeeEEee--CCEEe
Q psy14060        264 KPLDVYWLK--VSSLS  277 (283)
Q Consensus       264 p~~~v~W~~--~g~~l  277 (283)
                      |.+.+.|++  +|..+
T Consensus       167 ~~~~v~W~k~~~g~~~  182 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAP  182 (257)
T ss_dssp             CBTCEEEEEECTTSCC
T ss_pred             CCCcEEEEEECCCCCc
Confidence            888999999  66543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.61  E-value=4.7e-15  Score=124.42  Aligned_cols=133  Identities=11%  Similarity=0.094  Sum_probs=96.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEec-----------------CCCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI-----------------TSSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+..|+.+.|.|.+.+.+  .+.+.|||+  +..+                 ....++.+...  ....+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            34567889999999999998863  578999986  3221                 01245655543  3457899999


Q ss_pred             CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-CeeEEeeC
Q psy14060        196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKV  273 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~  273 (283)
                      +..+|+|.|.|.+.|..+.......|.|....      ..+|.+...+....+.+|+.++|.|.+.|. |. +.+.|+++
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  159 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  159 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSC------CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTT
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCC------CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecC
Confidence            99999999999999865444445667776311      124555544434456899999999999997 54 68999999


Q ss_pred             CEEe
Q psy14060        274 SSLS  277 (283)
Q Consensus       274 g~~l  277 (283)
                      |..+
T Consensus       160 g~~~  163 (344)
T 1za6_B          160 ALTS  163 (344)
T ss_dssp             TBCT
T ss_pred             CccC
Confidence            9764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=6.4e-15  Score=117.46  Aligned_cols=161  Identities=12%  Similarity=0.054  Sum_probs=99.4

Q ss_pred             eeeecCcEEEEEEEccC--c--cceEEee-------------------------cCCCEEEEEcC--CEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGD--K--EIVRKIT-------------------------ATETTEMEHKG--KIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~--~--~i~~~~~-------------------------~~~~~~~~~~~--~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.+.  +  .+. |..                         ...|+.+....  ...+|.|.+++.+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~-W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (242)
T 1hxm_B           12 TKTLSKTARLECVVSGITISATSVY-WYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (242)
T ss_dssp             EEETTCCEEEEEEEESSCTTTSCEE-EEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEeCCccccCceEE-EEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcc
Confidence            36678899999999875  2  332 211                         23455554322  4789999999999


Q ss_pred             CCeEEEEEEEecc------e--eeeeeccCCCC-------CCeEEe-cCCceeecCCCcEEEEEEEeee-cC-CEEEEEe
Q psy14060        108 DDGYYAITERKYY------A--LSDLSEQKPAK-------PPVFTK-KIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFR  169 (283)
Q Consensus       108 D~G~Y~C~a~n~~------~--~~~~~~~~~~~-------~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k  169 (283)
                      |+|.|.|.+.+..      .  ......+.+..       +|.... .+....+..|+.+.|.|.+.|. |. +.+.|++
T Consensus        91 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  170 (242)
T 1hxm_B           91 DIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEE  170 (242)
T ss_dssp             GCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEE
T ss_pred             cCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEc
Confidence            9999999988752      1  11111222211       232221 2333445679999999999986 64 6899999


Q ss_pred             CCE-ecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        170 EDF-PITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       170 ~~~-~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      ++. .+.......+...+.    .+.|.|..... + |.|+|.+.|..+.......+.
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~  226 (242)
T 1hxm_B          171 KKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEII  226 (242)
T ss_dssp             SSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEE
T ss_pred             CCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEee
Confidence            987 553321000111111    24688877664 4 999999999987654444443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.60  E-value=9.7e-15  Score=115.08  Aligned_cols=132  Identities=13%  Similarity=0.087  Sum_probs=92.8

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec-----------------CCCCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      +....+..|++++|.|.+.+.+  .+.+.|||+.  ..+                 ....++.+...  ....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4557889999999999998765  6789999853  211                 01235555543  34578999999


Q ss_pred             CCCCCEEEEEEEEeCCc-----e---eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-
Q psy14060        197 FMEDSGVFAVIAENRGG-----K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-  266 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g-----~---~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-  266 (283)
                      ..+|+|.|.|.+.|..+     .   ......|.|....      ..+|.+........+..|+.++|.|.+.|. |.| 
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  160 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS------CBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC------CcCCeEEEecccccccCCCcEEEEEEEEeEECCCe
Confidence            99999999999999764     2   1123567776411      124555432222235789999999999987 766 


Q ss_pred             eeEEeeCCEEe
Q psy14060        267 DVYWLKVSSLS  277 (283)
Q Consensus       267 ~v~W~~~g~~l  277 (283)
                      .|.|+++|..+
T Consensus       161 ~v~W~~~~~~~  171 (225)
T 1op3_H          161 TVSWNSGALTS  171 (225)
T ss_dssp             EEECCTTSCCT
T ss_pred             EEEEecCCCcC
Confidence            89999999763

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=6.4e-16  Score=122.36  Aligned_cols=134  Identities=13%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             CCceeecCCCcEEEEEEEeeec-CC-EEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP-LP-TIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p-~~-~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      +....+..|+++.|.|.+.+.+ .+ .+.|||++  ..+            ....++.+.......+|.|.++..+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            5567788999999999998754 34 79999863  211            01245666555667789999999999999


Q ss_pred             EEEEEEeCCce---eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060        204 FAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSD  278 (283)
Q Consensus       204 Y~C~a~n~~g~---~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~  278 (283)
                      |.|.+.|..+.   ......|.|....      ..+|.+...+....+..|+.++|.|.+.|.+++  .++|++||+.+.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  179 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQP------KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK  179 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCC------CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCC------CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence            99999998772   2222445443210      134555443333334568899999999986443  899999999875


Q ss_pred             C
Q psy14060        279 V  279 (283)
Q Consensus       279 ~  279 (283)
                      .
T Consensus       180 ~  180 (234)
T 2j6e_L          180 A  180 (234)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.1e-14  Score=101.39  Aligned_cols=95  Identities=22%  Similarity=0.360  Sum_probs=80.0

Q ss_pred             CCCCCeEEe---cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        130 PAKPPVFTK---KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       130 ~~~~p~~~~---~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +..+|.+..   ......+..|+.+.|.|.+.|.|.|.+.|+|++..+. ..++.+........|.|.++..+|+|.|+|
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   96 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYEL   96 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEE
Confidence            344666654   2456788999999999999999999999999999986 345666666677789999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEe
Q psy14060        207 IAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.|..|.....+.|.|..
T Consensus        97 ~a~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           97 SVQIENMKDTATIRIRVVE  115 (118)
T ss_dssp             EEECSSCEECCEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEEc
Confidence            9999999888888888875

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=9e-15  Score=119.33  Aligned_cols=140  Identities=12%  Similarity=0.135  Sum_probs=97.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--EecC-----------------CCCCeEEEEe--CCEEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT-----------------SSPDFQIHTF--STKSILIM  193 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i  193 (283)
                      +..+....+.+|++++|.|.+.+.+  .+.+.|||++  ..+.                 ...++.+...  ....+|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3455677899999999999998864  5889999953  1110                 1235555543  34578999


Q ss_pred             cCCCCCCCEEEEEEEEeCCc---ee--EEEEEEEEEeccCCC-----CCCCCCCeEEecCCceEEcCCCeEEEEEEEEee
Q psy14060        194 RQVFMEDSGVFAVIAENRGG---KA--KCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g---~~--~~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~  263 (283)
                      .++..+|+|.|+|.+.|..|   ..  .....|.|.......     .....++.+...+....+.+|++++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            99999999999999999865   11  123466766421000     000023556666777789999999999999998


Q ss_pred             CCCeeEEee--CCEEe
Q psy14060        264 KPLDVYWLK--VSSLS  277 (283)
Q Consensus       264 p~~~v~W~~--~g~~l  277 (283)
                      | +.+.|+|  +|+.+
T Consensus       190 ~-~~v~W~k~~~g~~~  204 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSP  204 (282)
T ss_dssp             C-SCCEEEEECTTSCC
T ss_pred             C-ceEEEEEECCCCCc
Confidence            8 8999999  66544

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.60  E-value=5.9e-15  Score=119.40  Aligned_cols=140  Identities=16%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------------CCC----CCeEEEEe-CCEEEEEEcC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------------TSS----PDFQIHTF-STKSILIMRQ  195 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------------~~~----~~~~~~~~-~~~~~l~i~~  195 (283)
                      .+...+....+..|++++|.|.+. .+.+.+.|||.  +...            ...    .++.+... ....+|.|.+
T Consensus        28 ~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~  106 (268)
T 3pl6_D           28 GVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQR  106 (268)
T ss_dssp             SCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECS
T ss_pred             eeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECC
Confidence            344455667899999999999986 47789999982  2111            110    34444432 2356899999


Q ss_pred             CCCCCCEEEEEEEEeC--CceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEeeCCC--eeEE
Q psy14060        196 VFMEDSGVFAVIAENR--GGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPL--DVYW  270 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W  270 (283)
                      +..+|+|.|+|.+.+.  .........+.|.....    ...+|.+.. .+....+..|+.++|.|.+.|.+++  .+.|
T Consensus       107 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          107 TERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLK----NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             CCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCcccCEEEEEEEecCCCceeeCCcEEEEEecCcc----cccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            9999999999999974  22333345566664100    012455443 3444456679999999999996655  8999


Q ss_pred             eeCCEEecC
Q psy14060        271 LKVSSLSDV  279 (283)
Q Consensus       271 ~~~g~~l~~  279 (283)
                      ++||+.+..
T Consensus       183 ~~~g~~l~~  191 (268)
T 3pl6_D          183 WVNGKEVHS  191 (268)
T ss_dssp             EESSSEECT
T ss_pred             EECCEECCC
Confidence            999998854

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.60  E-value=2.9e-15  Score=103.75  Aligned_cols=94  Identities=28%  Similarity=0.512  Sum_probs=84.0

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|+|.|+|.+.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            45788888889999999999999999999999999999999988877788777766678999999999999999999999


Q ss_pred             CCceeEEEEEEEEE
Q psy14060        211 RGGKAKCSANLVVE  224 (283)
Q Consensus       211 ~~g~~~~~~~l~v~  224 (283)
                      ..|.....+.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998888887764

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.59  E-value=1.6e-14  Score=114.86  Aligned_cols=139  Identities=15%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--------------CEecC---CCCCeEEEEe-CCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--------------DFPIT---SSPDFQIHTF-STKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--------------~~~~~---~~~~~~~~~~-~~~~~l~i~~~~  197 (283)
                      +...+....+.+|+.+.|.|.+.+ +.+.+.|||.              +....   ...++.+... ....+|.|.++.
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            445566788999999999999876 7889999982              11111   1235555442 345689999999


Q ss_pred             CCCCEEEEEEEEeCC---ceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEe-eCCC-eeEEe
Q psy14060        198 MEDSGVFAVIAENRG---GKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISA-TKPL-DVYWL  271 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~  271 (283)
                      .+|+|.|.|.+.+..   ........+.|.....    ...+|.+.. .+....+..|+.+.|.|.+.| .|.+ .+.|+
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  159 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR----NVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW  159 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEecccc----CCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence            999999999998322   1222334566653100    012455543 344445667999999999998 5556 78999


Q ss_pred             eCCEEecC
Q psy14060        272 KVSSLSDV  279 (283)
Q Consensus       272 ~~g~~l~~  279 (283)
                      +||+.+..
T Consensus       160 ~~g~~l~~  167 (240)
T 3q5y_A          160 VNGKEVHS  167 (240)
T ss_dssp             ETTEEECT
T ss_pred             ECCEECcC
Confidence            99999854

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.59  E-value=2.1e-14  Score=114.51  Aligned_cols=136  Identities=12%  Similarity=0.016  Sum_probs=97.8

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.+...+.. .+..|++++|.|.+.+ +.+.+.|||++..+..... ..........|.|.+++.+|+|.|.|.+.|
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            347777777766 8899999999999875 5678999999986531000 000012355799999999999999999988


Q ss_pred             CCcee--EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        211 RGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       211 ~~g~~--~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      ..+..  +..+.|.|....       .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|+.+.
T Consensus        82 ~~~~s~~S~~~~L~V~~~~-------~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  142 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEMY-------DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSH  142 (242)
T ss_dssp             TTEECCCCCCEEEEEECCS-------CCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCE
T ss_pred             CCccccCCcceEEEeeccc-------CCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccC
Confidence            75432  334667776421       256666544 4568999999999998763 56899999997653

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.59  E-value=1.9e-14  Score=113.64  Aligned_cols=133  Identities=11%  Similarity=0.056  Sum_probs=89.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c---C-----------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---T-----------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~---~-----------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+..|++++|.|.+.+.+  .+.+.|||++  ..   +   .           ...++.+...  ....+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            45567889999999999998865  6789999863  11   1   0           0235555443  3467899999


Q ss_pred             CCCCCCEEEEEEEEeCCcee-EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEee
Q psy14060        196 VFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLK  272 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~  272 (283)
                      +..+|+|.|.|.+.+..+.. .....|.|....      ..+|.+........+..|+.++|.|.+.|. |.+ .+.|++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  159 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK------TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNS  159 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSC------CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCC------CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEec
Confidence            99999999999999864321 122466665310      124555543333456789999999999986 766 899999


Q ss_pred             CCEEe
Q psy14060        273 VSSLS  277 (283)
Q Consensus       273 ~g~~l  277 (283)
                      +|+.+
T Consensus       160 ~g~~~  164 (227)
T 1mju_H          160 GSLSS  164 (227)
T ss_dssp             GTBCT
T ss_pred             CCCcC
Confidence            99764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.5e-14  Score=116.30  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=99.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--Eec-----------------CCCCCeEEEEe--CCE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FPI-----------------TSSPDFQIHTF--STK  188 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~~~-----------------~~~~~~~~~~~--~~~  188 (283)
                      .++.+...+..+.+.+|++++|.|.+.+.  +.+.+.|||..  ..+                 ....++.+...  ...
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            35667777888999999999999999883  67889999742  110                 01235555533  346


Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeC------------CceeEEEEEEEEEeccCCC-----CCCCCCCeEEecCCceEEcCC
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENR------------GGKAKCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVG  251 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~------------~g~~~~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g  251 (283)
                      .+|.|.++..+|+|.|+|.+.|.            .........|.|.......     .....+|.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            68999999999999999999986            2223334566665421000     000014567777888899999


Q ss_pred             CeEEEEEEEEeeCC-CeeEEee
Q psy14060        252 QLARFDAKISATKP-LDVYWLK  272 (283)
Q Consensus       252 ~~v~L~C~~~g~p~-~~v~W~~  272 (283)
                      ++++|.|.+.+.|. +.+.|++
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEE
T ss_pred             CCEEEEEEECCCcCCeeEEEEE
Confidence            99999999998776 7999998

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.59  E-value=3.6e-14  Score=114.00  Aligned_cols=140  Identities=13%  Similarity=0.150  Sum_probs=95.1

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--E---ec-------------CCCCCeEEEEe--CCEEEE
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI-------------TSSPDFQIHTF--STKSIL  191 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~---~~-------------~~~~~~~~~~~--~~~~~l  191 (283)
                      ...+..+....+.+|++++|.|.+.+.  +.+.+.|||..  .   .+             ....++.+...  ....+|
T Consensus         9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A            9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            334445566779999999999999884  47899999832  1   11             01234555442  345689


Q ss_pred             EEcCCCCCCCEEEEEEEEeCC----ceeEEEEEEEEEeccCC----CCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee
Q psy14060        192 IMRQVFMEDSGVFAVIAENRG----GKAKCSANLVVEEKRQG----GRGGVVPPSFLTTISSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~----g~~~~~~~l~v~~~~~~----~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~  263 (283)
                      .|.++..+|+|.|+|.+.|..    ........|.|......    ......++.+...+....+.+|++++|.|.+.+.
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  168 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSS  168 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSC
T ss_pred             EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccC
Confidence            999999999999999999972    22223355666542000    0000024566666777889999999999999998


Q ss_pred             CCC-eeEEeeC
Q psy14060        264 KPL-DVYWLKV  273 (283)
Q Consensus       264 p~~-~v~W~~~  273 (283)
                      |.+ .+.|++.
T Consensus       169 ~~~~~v~W~k~  179 (257)
T 3gkz_A          169 VSSSHLYWYQQ  179 (257)
T ss_dssp             CCGGGEEEEEE
T ss_pred             ccceEEEEEEE
Confidence            877 8999983

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.59  E-value=1.9e-14  Score=112.98  Aligned_cols=131  Identities=14%  Similarity=0.067  Sum_probs=93.4

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E---ecC--------------CCCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PIT--------------SSPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      +....+..|++++|.|.+.+.+  .+.+.|||..  .   .+.              ...++.+...  ....+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4557889999999999998765  5789999853  1   110              1235555543  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCcee---EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC--CeeEE
Q psy14060        197 FMEDSGVFAVIAENRGGKA---KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP--LDVYW  270 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~--~~v~W  270 (283)
                      ..+|+|.|.|.+.+..+..   .....|.|....      ..+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W  159 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES------ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTW  159 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC------CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEE
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCC------CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEE
Confidence            9999999999999876531   123466665321      1356665544 3446789999999999987 76  68999


Q ss_pred             eeCCEEe
Q psy14060        271 LKVSSLS  277 (283)
Q Consensus       271 ~~~g~~l  277 (283)
                      +++|..+
T Consensus       160 ~~~~~~~  166 (220)
T 2fbj_H          160 GKSGKDI  166 (220)
T ss_dssp             SCCCSSC
T ss_pred             ecCCEec
Confidence            9999765

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.59  E-value=4.4e-15  Score=119.55  Aligned_cols=140  Identities=14%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---cC--C--C----------CCeEEE--EeCCEEEEE
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---IT--S--S----------PDFQIH--TFSTKSILI  192 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~~--~--~----------~~~~~~--~~~~~~~l~  192 (283)
                      |.+...+..+.+.+|++++|.|.+.+.+.+.+.|||..  ..   +.  .  .          .+....  ......+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            44555667788999999999999998888999999831  11   00  0  0          011111  112334799


Q ss_pred             EcCCCCCCCEEEEEEEEeCCc---eeEEEEEEEEEeccCCC-------CCCCCCCeEEecCCceEEcCCCeEEEEEEEEe
Q psy14060        193 MRQVFMEDSGVFAVIAENRGG---KAKCSANLVVEEKRQGG-------RGGVVPPSFLTTISSAVINVGQLARFDAKISA  262 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~-------~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g  262 (283)
                      |.++..+|+|.|+|.+.|..+   .......|.|......+       .....+|.+...+....+.+|++++|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            999999999999999998765   23333566666421000       00001356777777789999999999999887


Q ss_pred             e-CCCeeEEeeC
Q psy14060        263 T-KPLDVYWLKV  273 (283)
Q Consensus       263 ~-p~~~v~W~~~  273 (283)
                      . |.+.+.|++.
T Consensus       163 ~~~~~~v~W~k~  174 (259)
T 3omz_A          163 SWWSYYIFWYKR  174 (259)
T ss_dssp             CCSSCEEEEEEE
T ss_pred             ccCCceEEEeee
Confidence            4 7789999984

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.59  E-value=1.3e-15  Score=121.28  Aligned_cols=161  Identities=11%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             eEEEEEEEeccee-eeeeccCCCCCCeEEecCCcee-ecCCCcEEEEEEEeeec----CCEEEEEeCCEecCCCCC--eE
Q psy14060        110 GYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCR-AFEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPD--FQ  181 (283)
Q Consensus       110 G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p----~~~~~W~k~~~~~~~~~~--~~  181 (283)
                      |.|.|...+..+. ...  .....|+.++..+.... +..|+.+.|.|.+.|.+    ...++|+|+|..+.....  ..
T Consensus         1 ~~~~~~~~~~~~~c~~~--~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~   78 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAP--ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE   78 (240)
T ss_dssp             ------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCE
T ss_pred             CceeeeeeecCCCCCcc--ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccce
Confidence            7899988776542 111  11223444555555555 66799999999999863    348999999998754210  00


Q ss_pred             EEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEE
Q psy14060        182 IHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA  258 (283)
Q Consensus       182 ~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C  258 (283)
                      ....+.   .+.|.|......|.|.|+|.+.|..+.......+....      ....+|.+...+.......|+.++|.|
T Consensus        79 ~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~------~~~~~P~V~v~~~~~~~~~g~~~~L~C  152 (240)
T 4acp_A           79 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK------GQPREPQVYTLPPSRDELTKNQVSLTC  152 (240)
T ss_dssp             EC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC------SCCBCCEEEEECCCGGGGGSSEEEEEE
T ss_pred             ECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC------CCCCCCEEEEECCChHHhcCCceEEEE
Confidence            111111   23577766666678999999999876433222322100      001467666654443334589999999


Q ss_pred             EEEe-eCCC-eeEEeeCCEEec
Q psy14060        259 KISA-TKPL-DVYWLKVSSLSD  278 (283)
Q Consensus       259 ~~~g-~p~~-~v~W~~~g~~l~  278 (283)
                      .+.| +|.+ .+.|++||+.+.
T Consensus       153 ~~~gf~P~~i~v~W~k~g~~~~  174 (240)
T 4acp_A          153 LVKGFYPSDIAVEWESNGQPEN  174 (240)
T ss_dssp             EEEEEBSSCCEEEEEETTEECS
T ss_pred             EEeEEeCCCcEEEEEECCEECC
Confidence            9999 4554 799999999874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.59  E-value=1.4e-14  Score=116.41  Aligned_cols=137  Identities=15%  Similarity=0.225  Sum_probs=94.9

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c----------CCCCCeEEE--EeCCEEEEEEcCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I----------TSSPDFQIH--TFSTKSILIMRQVF  197 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~----------~~~~~~~~~--~~~~~~~l~i~~~~  197 (283)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|||..  ..   +          ....++.+.  ......+|.|.++.
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            4455667788999999999999998899999999832  11   0          012234442  22346689999999


Q ss_pred             CCCCEEEEEEEEeCCce----eEEEEEEEEEeccC----------CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee
Q psy14060        198 MEDSGVFAVIAENRGGK----AKCSANLVVEEKRQ----------GGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~~~----------~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~  263 (283)
                      .+|+|.|+|.+.|..+.    ......|.|.....          .......+|.+...+....+.+|++++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            99999999999987542    12234566654100          00001135677777888888999999999999886


Q ss_pred             CCCeeEEee
Q psy14060        264 KPLDVYWLK  272 (283)
Q Consensus       264 p~~~v~W~~  272 (283)
                       .+.+.|++
T Consensus       165 -~~~v~W~k  172 (256)
T 3tf7_C          165 -HNYMYWYR  172 (256)
T ss_dssp             -CSEEEEEE
T ss_pred             -ceEEEEEE
Confidence             67999998

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.59  E-value=1.2e-14  Score=113.93  Aligned_cols=132  Identities=13%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c---CC-------------CCCeEEEEe--CCEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---TS-------------SPDFQIHTF--STKSILIM  193 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~---~~-------------~~~~~~~~~--~~~~~l~i  193 (283)
                      .+....+..|+++.|.|.+.+.+  .+.+.|+|++  ..   +   ..             ..++.+...  ....+|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35567889999999999998765  6899999853  11   1   00             235555443  24568999


Q ss_pred             cCCCCCCCEEEEEEEEeCCcee-E--EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-ee
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKA-K--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DV  268 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~-~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v  268 (283)
                      .++..+|+|.|.|.+.|..+.. .  ....|.|....      ..+|.+...+....+.+|+.++|.|.+.|. |.| .+
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT------TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC------CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC------CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999999999999999875432 1  23566665310      135666554434456789999999999997 888 99


Q ss_pred             EEeeCCEE
Q psy14060        269 YWLKVSSL  276 (283)
Q Consensus       269 ~W~~~g~~  276 (283)
                      .|+++|..
T Consensus       160 ~W~~~~~~  167 (220)
T 1pz5_B          160 KWNYGALS  167 (220)
T ss_dssp             EEGGGTCC
T ss_pred             EEecCCcc
Confidence            99998863

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=2.2e-14  Score=100.96  Aligned_cols=97  Identities=23%  Similarity=0.414  Sum_probs=83.9

Q ss_pred             CCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeC-CEEEEEEcCCCCCCCEEEEE
Q psy14060        129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFS-TKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       129 ~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ....+|.|+..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+.... ...+|.|.++..+|+|.|+|
T Consensus        11 ~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            445688888888999999999999999999999999999999998875 4566665544 34589999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEe
Q psy14060        207 IAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.|..|.....+.|.|..
T Consensus        91 ~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEEeC
Confidence            9999999998889998885

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.58  E-value=2.1e-14  Score=114.28  Aligned_cols=163  Identities=9%  Similarity=0.074  Sum_probs=101.3

Q ss_pred             eeeecCcEEEEEEEccCc-c---ce-EEee------------------------------cCCCEEEEE--cCCEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-E---IV-RKIT------------------------------ATETTEMEH--KGKIQERVV  101 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~---i~-~~~~------------------------------~~~~~~~~~--~~~~~~L~i  101 (283)
                      .+.+|++|+|.|.+.+.+ .   .. .|..                              ...|+.+..  ......|.|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   90 (239)
T 3tv3_H           11 LVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKL   90 (239)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEE
Confidence            466788999999998654 1   11 1111                              123454443  245788999


Q ss_pred             ccCCCCCCeEEEEEEEecc----------------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC
Q psy14060        102 DASELDDDGYYAITERKYY----------------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL  162 (283)
Q Consensus       102 ~~~~~~D~G~Y~C~a~n~~----------------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~  162 (283)
                      .+++.+|+|.|.|.+.+..                +......+  ....+|.+........+..|+.+.|.|.+.+. |.
T Consensus        91 ~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~  170 (239)
T 3tv3_H           91 NSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  170 (239)
T ss_dssp             CSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSS
T ss_pred             CCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCC
Confidence            9999999999999887652                11111112  22345666544444555679999999999884 54


Q ss_pred             C-EEEEEeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        163 P-TIKWFREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       163 ~-~~~W~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      + .+.|++++..+...........+.    .+.|.|......| |.|+|.+.|..+.......+.
T Consensus       171 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          171 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             CeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            4 589999886432100000011011    2358888888888 999999999887665555544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.58  E-value=3.6e-14  Score=111.70  Aligned_cols=133  Identities=13%  Similarity=0.061  Sum_probs=92.5

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E---ecC--------------CCCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PIT--------------SSPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      +....+..|+++.|.|.+.+.+  .+.+.|||+.  .   .+.              ...++.+...  ....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3567889999999999998764  4789999853  1   110              1235555543  23568999999


Q ss_pred             CCCCCEEEEEEEEeCCc----e--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-ee
Q psy14060        197 FMEDSGVFAVIAENRGG----K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DV  268 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g----~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v  268 (283)
                      ..+|+|.|.|.+.+..+    .  ......|.|....      ..+|.+........+..|+.++|.|.+.|. |.| .+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  160 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS------ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITF  160 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC------CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC------CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEE
Confidence            99999999999998753    1  1122466665311      124555432222345789999999999987 777 89


Q ss_pred             EEee-CCEEec
Q psy14060        269 YWLK-VSSLSD  278 (283)
Q Consensus       269 ~W~~-~g~~l~  278 (283)
                      .|++ ||+.+.
T Consensus       161 ~W~~~~g~~l~  171 (223)
T 1dee_B          161 SWKYKNNSDIS  171 (223)
T ss_dssp             EEEETTSCBCS
T ss_pred             EeEccCCCccc
Confidence            9999 998764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.5e-15  Score=104.39  Aligned_cols=111  Identities=20%  Similarity=0.278  Sum_probs=87.3

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+.. ..++.+...+   +|.|.++..+|+|.|+|.+.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            3577787778888999999999999999999999999999988864 3455554433   69999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ  252 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~  252 (283)
                      |..|.....+.|.|...        ..|.+...+.+..+.+|.
T Consensus        83 n~~g~~~~~~~l~V~~~--------~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEF--------GVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             CSSCEEEEECCEEEECC--------SCCCCCCCCCCCCCCCCC
T ss_pred             cCCCcEEEEEEEEEEeC--------CCCccCCCCCCCccCCCC
Confidence            99999888888988864        234444444455555553

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=100.70  Aligned_cols=96  Identities=25%  Similarity=0.531  Sum_probs=81.9

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+.. ..++.+... .....|.|.++..+|.|.|+|.+
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4577787778888999999999999999999999999999998875 455666554 34458999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEec
Q psy14060        209 ENRGGKAKCSANLVVEEK  226 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~~  226 (283)
                      .|..|.....+.|.|...
T Consensus        86 ~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             ECTTCCEEECCCEEEECC
T ss_pred             EECCCeEEEEEEEEEECC
Confidence            999999888888888863

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=117.32  Aligned_cols=143  Identities=19%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c-----------C---CCCCeEEEEe-CCEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I-----------T---SSPDFQIHTF-STKSILI  192 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~-----------~---~~~~~~~~~~-~~~~~l~  192 (283)
                      .+.+...+....+.+|+++.|.|.+.+.+.+.+.|||++  ..   +           .   ...++.+... ....+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            455666677889999999999999988777899999863  11   0           0   1235555442 3466899


Q ss_pred             EcCCCCCCCEEEEEEEEeCCc------eeEEEEEEEEEeccCCCCCCCCCCeEEec-CCceEEcCCCeEEEEEEEEeeCC
Q psy14060        193 MRQVFMEDSGVFAVIAENRGG------KAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISATKP  265 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~  265 (283)
                      |.++..+|+|.|+|.+.|..+      .......|.|.....    ...+|.+... +....+..|+.+.|.|.+.|.++
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK----NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG----GCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC----CCCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            999999999999999999421      111224566664100    0025655443 33334567999999999998743


Q ss_pred             --CeeEEeeCCEEecC
Q psy14060        266 --LDVYWLKVSSLSDV  279 (283)
Q Consensus       266 --~~v~W~~~g~~l~~  279 (283)
                        +.|.|++||+++..
T Consensus       180 ~~~~v~W~k~g~~l~~  195 (279)
T 2wbj_D          180 DHVELSWWVNGKEVHS  195 (279)
T ss_dssp             SCEEEEEEETTEECCT
T ss_pred             CCcEEEEEECCEECCC
Confidence              58999999998754

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.58  E-value=2.6e-15  Score=119.54  Aligned_cols=140  Identities=11%  Similarity=0.045  Sum_probs=91.2

Q ss_pred             CeEEecCCcee-ecCCCcEEEEEEEeee---cCC-EEEEEeCCEecCCCCC-eEEEEe----CCEEEEEEcCCCCCCCEE
Q psy14060        134 PVFTKKIQPCR-AFEQDQARFEVEFDGD---PLP-TIKWFREDFPITSSPD-FQIHTF----STKSILIMRQVFMEDSGV  203 (283)
Q Consensus       134 p~~~~~~~~~~-~~~g~~v~l~C~~~g~---p~~-~~~W~k~~~~~~~~~~-~~~~~~----~~~~~l~i~~~~~~d~G~  203 (283)
                      ..++..+.... +..|+.++|.|.+.+.   |.+ .+.|+|++..+..... ......    .....|.|.++..+|.|.
T Consensus        17 ~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~   96 (239)
T 1i1c_A           17 SVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKT   96 (239)
T ss_dssp             CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             EEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCe
Confidence            33444444333 7899999999999987   766 8999999866542110 000000    012469999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecC
Q psy14060        204 FAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDV  279 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~  279 (283)
                      |+|.+.|..+.......+....      ....+|.+...+.......|+.+.|.|.+.|. |. ..|.|++||+.+..
T Consensus        97 Y~C~~~~~~~~~~~~~~v~~~~------~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  168 (239)
T 1i1c_A           97 FKCKVNSGAFPAPIEKSISKPE------GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN  168 (239)
T ss_dssp             EEEEEECSSSSSCEEEEECCCS------SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred             EEEEEecccCCCCcEEEEecCC------CCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCC
Confidence            9999999887542222221100      00146766554443323458899999999985 44 37999999998753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.58  E-value=2.6e-14  Score=114.84  Aligned_cols=135  Identities=16%  Similarity=0.190  Sum_probs=93.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c--------------CCCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I--------------TSSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+.+|++++|.|.+.+.+  .+.+.|||..  ..   +              ....++.+...  ....+|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34456789999999999998865  6889999742  11   1              01234555433  3456799999


Q ss_pred             CCCCCCEEEEEEEEeC----CceeEEEEEEEEEeccC------CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC
Q psy14060        196 VFMEDSGVFAVIAENR----GGKAKCSANLVVEEKRQ------GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP  265 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~~~~------~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~  265 (283)
                      +..+|+|.|+|.+.|.    .+.......|.|.....      .......+|.+...+....+.+|++++|.|.+.+.|.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            9999999999999987    23333345666653100      0000012567777777789999999999999999888


Q ss_pred             CeeEEeeC
Q psy14060        266 LDVYWLKV  273 (283)
Q Consensus       266 ~~v~W~~~  273 (283)
                      +.+.|+++
T Consensus       168 ~~v~W~k~  175 (256)
T 3umt_A          168 SNLNWLQQ  175 (256)
T ss_dssp             TCEEEEEE
T ss_pred             cEEEEEEE
Confidence            89999984

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.58  E-value=9.7e-14  Score=109.83  Aligned_cols=164  Identities=7%  Similarity=0.022  Sum_probs=99.3

Q ss_pred             eeeecCcEEEEEEEccCc----cc--e--E--------Ee-----e-----------cCCCEEEEEc--CCEEEEEEccC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EI--V--R--------KI-----T-----------ATETTEMEHK--GKIQERVVDAS  104 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i--~--~--------~~-----~-----------~~~~~~~~~~--~~~~~L~i~~~  104 (283)
                      .+.+|++|+|.|.+.+.+    .+  .  +        .+     .           ...|+.+...  .+..+|.|.++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (232)
T 3qhz_H           11 LVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNM   90 (232)
T ss_dssp             EECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             EECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcC
Confidence            467788999999997632    23  2  1        11     0           0135555432  36788999999


Q ss_pred             CCCCCeEEEEEEEecc-----------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeeecC--CEEEEEe
Q psy14060        105 ELDDDGYYAITERKYY-----------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL--PTIKWFR  169 (283)
Q Consensus       105 ~~~D~G~Y~C~a~n~~-----------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k  169 (283)
                      +.+|+|.|.|.+.+..           +......+  ....+|.+........+..|+.+.|.|.+.+.++  ..+.|++
T Consensus        91 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~  170 (232)
T 3qhz_H           91 DPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  170 (232)
T ss_dssp             CGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEE
Confidence            9999999999998652           11111112  2234566654444445667999999999988543  4688999


Q ss_pred             CCEecCCCCCeEEEE-eC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        170 EDFPITSSPDFQIHT-FS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       170 ~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      ++..+.......... .+   ..+.|.|......| |.|+|.+.|..+.......+.+
T Consensus       171 ~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          171 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             GTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            886432100000000 01   12358888888888 9999999998877666555543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=98.79  Aligned_cols=93  Identities=25%  Similarity=0.470  Sum_probs=78.3

Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      ..+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.....   ........|.|.++..+|+|.|+|.
T Consensus         6 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A            6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             SCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCTTCCBCEEEE
T ss_pred             CCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCChhhCEEEEEE
Confidence            3455688888888889999999999999999999999999999988765432   2234567899999999999999999


Q ss_pred             EEeCCceeEEEEEEEE
Q psy14060        208 AENRGGKAKCSANLVV  223 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v  223 (283)
                      +.|..|.....+.|.|
T Consensus        83 a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           83 AENALGQVSCSAWVTV   98 (99)
T ss_dssp             EECSSCEEEEECCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999999877777665

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.58  E-value=1.5e-14  Score=116.09  Aligned_cols=137  Identities=15%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             EecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe---c--------------CCCCCeEEEEeC--CEEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP---I--------------TSSPDFQIHTFS--TKSILIM  193 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~---~--------------~~~~~~~~~~~~--~~~~l~i  193 (283)
                      +..+....+.+|++++|.|.+.+.+  .+.+.|||.  +..   +              ....++.+....  ...+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            4456678899999999999998843  679999982  111   0              012355554432  3567999


Q ss_pred             cCCCCCCCEEEEEEEEeCCcee-EEEEEEEEEeccCCC-----CCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-  266 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-  266 (283)
                      .++..+|+|.|+|.+.|..+.. .....|.|.......     .....+|.+...+....+.+|++++|.|.+.+.|.+ 
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  164 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRY  164 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEET
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccC
Confidence            9999999999999999865443 234556665310000     000125677777777899999999999999988776 


Q ss_pred             ---eeEEeeC
Q psy14060        267 ---DVYWLKV  273 (283)
Q Consensus       267 ---~v~W~~~  273 (283)
                         .+.|+++
T Consensus       165 ~~~~v~W~r~  174 (253)
T 3uzq_A          165 GNSFMHWYQQ  174 (253)
T ss_dssp             TEECEEEEEE
T ss_pred             CCcEEEEEEE
Confidence               8999984

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.58  E-value=1.4e-14  Score=114.33  Aligned_cols=132  Identities=13%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             CCceeecCCCcEEEEEEEeeecC----CEEEEEeCC--Eec----C------------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPL----PTIKWFRED--FPI----T------------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~----~~~~W~k~~--~~~----~------------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      +....+..|++++|.|.+.+.|.    +.+.|||+.  ..+    .            ...++.+...  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            45678899999999999988664    899999852  211    0            0134555443  2357899999


Q ss_pred             CCCCCCEEEEEEEEeCCc------e---eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC
Q psy14060        196 VFMEDSGVFAVIAENRGG------K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP  265 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~g------~---~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~  265 (283)
                      +..+|+|.|.|.+.|..|      .   ......|.|....      ..+|.+........+..|+.+.|.|.+.|. |.
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~------~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~  160 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK------TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE  160 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC------CBCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC------CCCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence            999999999999998764      1   1122566665310      135665544433446789999999999986 77


Q ss_pred             C-eeEEeeCCEEe
Q psy14060        266 L-DVYWLKVSSLS  277 (283)
Q Consensus       266 ~-~v~W~~~g~~l  277 (283)
                      | .+.|+++|..+
T Consensus       161 p~~v~W~~~~~~~  173 (228)
T 3bae_H          161 PVTLTWNSGSLSS  173 (228)
T ss_dssp             CCEEEEGGGTCCT
T ss_pred             CEEEEEeeCCccc
Confidence            7 99999998753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.58  E-value=1.3e-14  Score=116.70  Aligned_cols=136  Identities=8%  Similarity=0.026  Sum_probs=95.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+. ..+..|++++|.|.+.+ +.+.+.|||++..+...... ..........|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            4666665554 67889999999999975 57899999998654210000 000011245799999999999999999986


Q ss_pred             CCc-----eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEec
Q psy14060        211 RGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       211 ~~g-----~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~  278 (283)
                      ...     ..+..+.|.|....       .+|.+...+. ..+.+|++++|.|.+.+. .+.|.|+|||+.+.
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~-------~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  147 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLY-------EKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHE  147 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSS-------CCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCE
T ss_pred             cCCCccccccCCCEEEecccCC-------CCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccC
Confidence            431     22344677776531       3566665544 467899999999999875 47899999997664

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.57  E-value=1.9e-14  Score=112.22  Aligned_cols=130  Identities=17%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             ecCCceeecCCCcEEEEEEEeee-------cCCEEEEEeCCEe------cC-----------CCCCeEEEEe--CCEEEE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGD-------PLPTIKWFREDFP------IT-----------SSPDFQIHTF--STKSIL  191 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~-------p~~~~~W~k~~~~------~~-----------~~~~~~~~~~--~~~~~l  191 (283)
                      ..+....+..|+.+.|.|.+.+.       +.+.+.|+|++..      +.           ...++.+...  ....+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34566788999999999998753       4678999998652      10           1123333221  123469


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCceeE----EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee----
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGGKAK----CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT----  263 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g~~~----~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~----  263 (283)
                      .|.++..+|+|.|.|.+.+..+...    ....|.|....       .+|.+.. +.  .+.+|+.++|.|.+.+.    
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~  154 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI-------EKPDIHF-LE--PLESGRPTRLSCSLPGSCEAG  154 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC-------CCCEEC---C--CCCTTCCEEEEEECTTCCSCS
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC-------CCCceec-Cc--cccCCCeEEEEEEeccCCCCC
Confidence            9999999999999999998864332    24667776531       2455543 22  26799999999999764    


Q ss_pred             CCCeeEEeeCCEEe
Q psy14060        264 KPLDVYWLKVSSLS  277 (283)
Q Consensus       264 p~~~v~W~~~g~~l  277 (283)
                      |.|.+.|+++|..+
T Consensus       155 p~p~v~W~~~~~~~  168 (214)
T 2zg1_A          155 PPLTFSWTGNALSP  168 (214)
T ss_dssp             SCCEEEEESSTTSS
T ss_pred             CCceEEEeCCCCcc
Confidence            78899999998653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.57  E-value=4.8e-14  Score=113.89  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec------CCEEEEEeCC--Eec---C---------CCCCeEEEEeCCEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP------LPTIKWFRED--FPI---T---------SSPDFQIHTFSTKSILI  192 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p------~~~~~W~k~~--~~~---~---------~~~~~~~~~~~~~~~l~  192 (283)
                      .+.+...+..+.+.+|++++|.|.+.+.+      .+.+.|||+.  ..+   .         ...++.+........|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            34566667778999999999999998876      5789999852  211   0         13466665556677899


Q ss_pred             EcCCCCCCCEEEEEEEEeCCce-eEEEEEEEEEeccCC--------CCCCC-CCCeEEecCCceEEcCCCeEEEEEEEEe
Q psy14060        193 MRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQG--------GRGGV-VPPSFLTTISSAVINVGQLARFDAKISA  262 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~--------~~~~~-~~p~~~~~~~~~~v~~g~~v~L~C~~~g  262 (283)
                      |.++..+|+|.|.|.+.|..+. ......|.|......        ..... .++..+..+....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            9999999999999999987543 222356777642100        00000 0112222334457899999999999998


Q ss_pred             eCC--CeeEEeeC
Q psy14060        263 TKP--LDVYWLKV  273 (283)
Q Consensus       263 ~p~--~~v~W~~~  273 (283)
                      .+.  +.+.|+++
T Consensus       165 ~~~~~~~v~W~r~  177 (264)
T 2gjj_A          165 YSFTGYFINWVKK  177 (264)
T ss_dssp             SCGGGSEEEEEEE
T ss_pred             CccCCeEEEEEEE
Confidence            764  78999996

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=97.68  Aligned_cols=86  Identities=13%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CCCeEEecCCce--eecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPC--RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~--~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .|+.+..+..+.  .+..|+.+.|.|.+.+ |.+.+.|+|+|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            355555555554  4568999999999976 8899999999999998888899888888999999999999999999985


Q ss_pred             eCCceeEEEEEEE
Q psy14060        210 NRGGKAKCSANLV  222 (283)
Q Consensus       210 n~~g~~~~~~~l~  222 (283)
                      |.    ..++.|.
T Consensus        82 n~----~~~~~lt   90 (91)
T 2lvc_A           82 DE----CAYFTVT   90 (91)
T ss_dssp             SC----EEEEEEE
T ss_pred             ce----EEEEEEE
Confidence            54    4445544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.7e-13  Score=105.83  Aligned_cols=132  Identities=23%  Similarity=0.254  Sum_probs=100.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC--CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+|.+ ..+....+..|+.+.|.|.+.|.|.|.+.|+|++..+...  .++.+........|.|.++..+|.|.|+|.|.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            35666 4666788999999999999999999999999999998765  45677666677899999999999999999999


Q ss_pred             eCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE----eeCCC--eeEEeeCCEE
Q psy14060        210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS----ATKPL--DVYWLKVSSL  276 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~----g~p~~--~v~W~~~g~~  276 (283)
                      |..|.....+.+.|....       .+|....     ....+..+.|.|...    +.|..  .+.|.+++..
T Consensus        97 n~~g~~~~~~~l~v~~~P-------~~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~  157 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTP-------SSPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE  157 (215)
T ss_dssp             CSSCEEEEEEEEEECCCC-------CCCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC
T ss_pred             ECCCceEEEEEEEECCCC-------CCCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCC
Confidence            999998888888876531       2333221     123567788888742    22322  4778887753

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.57  E-value=5.3e-15  Score=117.14  Aligned_cols=140  Identities=11%  Similarity=0.119  Sum_probs=90.8

Q ss_pred             CCeE-EecCCceeecCCCcEEEEEEEeee-cC-C-EEEEEeCCEec-CCCCCeEEEEe-C---CEEEEEEcCCCCCCCEE
Q psy14060        133 PPVF-TKKIQPCRAFEQDQARFEVEFDGD-PL-P-TIKWFREDFPI-TSSPDFQIHTF-S---TKSILIMRQVFMEDSGV  203 (283)
Q Consensus       133 ~p~~-~~~~~~~~~~~g~~v~l~C~~~g~-p~-~-~~~W~k~~~~~-~~~~~~~~~~~-~---~~~~l~i~~~~~~d~G~  203 (283)
                      +|.+ +..+....+..|+.++|.|.+.|. |. | .+.|+++|..+ ........... +   ....|.|.++..+|.|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            4444 345566677899999999999985 64 5 99999998876 32221111111 1   12469999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecC-CceEEcCCCeEEEEEEEEee-C-CCeeEEeeCCEEecC
Q psy14060        204 FAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVGQLARFDAKISAT-K-PLDVYWLKVSSLSDV  279 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~l~~  279 (283)
                      |+|.+.|..+.......+.+..      ....+|.+.... .... ..|..+.|.|.+.|. | .+.|.|++||+.+..
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~------~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  163 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNT------GPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPA  163 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCC------SCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             EEEEEEcCCCCCceEEEEecCC------CCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCC
Confidence            9999999876533333322110      001355554332 2222 235679999999996 4 368999999998854

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=9.3e-15  Score=96.44  Aligned_cols=81  Identities=17%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      +..+.+.+|+.+.|.|.+.+ |.|.+.|||+|..+....++.+...+..+.|.|.++..+|+|.|+|.|.|    ....+
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEE
Confidence            45678899999999999977 88999999999999988888888888888999999999999999999844    45566


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|.+
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            777653

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.56  E-value=4e-14  Score=113.65  Aligned_cols=133  Identities=9%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             CCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      +....+.+|++++|.|.+.+.  +.+.+.|||+.  ...            ....++.+...+...+|.|.++..+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            345778999999999999886  67899999842  111            01246666666667789999999999999


Q ss_pred             EEEEEEeCCce---eEEEEEEEEEeccCCCC----------CC-CCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCe
Q psy14060        204 FAVIAENRGGK---AKCSANLVVEEKRQGGR----------GG-VVPPSFLTTISSAVINVGQLARFDAKISATK--PLD  267 (283)
Q Consensus       204 Y~C~a~n~~g~---~~~~~~l~v~~~~~~~~----------~~-~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~  267 (283)
                      |+|.+.|..+.   ......|.|........          .. ..++.+. .+....+.+|++++|.|.+.+.+  .+.
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            99999987542   22235566654210000          00 0011333 33455689999999999999876  678


Q ss_pred             eEEeeC
Q psy14060        268 VYWLKV  273 (283)
Q Consensus       268 v~W~~~  273 (283)
                      +.|+++
T Consensus       168 v~W~r~  173 (256)
T 3ux9_B          168 MSWVRQ  173 (256)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.56  E-value=7.5e-15  Score=111.80  Aligned_cols=119  Identities=11%  Similarity=0.159  Sum_probs=87.2

Q ss_pred             CceeecCCCcEEEEEEEe--eecCCEEEEEe--CCEec----------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFD--GDPLPTIKWFR--EDFPI----------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~--g~p~~~~~W~k--~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      .......|+++.|.|...  +.+.+.+.|++  ++..+          ....++.+...   .+|.|.++..+|+|.|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n---gsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN---GTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT---SCEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC---CCEEECCCChhhCEEEEE
Confidence            345678899999999542  23467899999  87765          23345554422   269999999999999999


Q ss_pred             EEEeCCceeE--EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        207 IAENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       207 ~a~n~~g~~~--~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      .+.|..|...  ..+.|.|.+..       .+|.+..        .+..+.|.|.+.+.|.+.|.|++||+.+
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~-------~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERV-------SKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCC-------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             EEEeCCCceeEEEEEEEEEcCcC-------CCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC
Confidence            9999887754  34567776421       2444433        2336899999999898999999999887

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.56  E-value=1.5e-15  Score=115.81  Aligned_cols=118  Identities=12%  Similarity=0.072  Sum_probs=86.1

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEe--cCC------------CCCeEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFP--ITS------------SPDFQIHT---FSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~--~~~------------~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      .+.+..|+++.|.|.+.+.|.+.+.|++++..  +..            ..++.+..   .....+|.|.++..+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35688999999999999888899999998752  210            11111111   11244699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060        205 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLS  277 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l  277 (283)
                      +|.+.|..+    .+.|.|...             . .+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+
T Consensus        84 ~C~~~~~~~----~~~l~V~~~-------------~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  138 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGL-------------T-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN  138 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEE-------------E-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEEEEcCCC----cEEEEEEEe-------------c-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc
Confidence            999987644    344555421             1 133457899999999999998899999999998654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.56  E-value=5.5e-14  Score=113.34  Aligned_cols=134  Identities=11%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             ecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec------C-----------CCCCeEEEEe--CCEEEEEEc
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI------T-----------SSPDFQIHTF--STKSILIMR  194 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~------~-----------~~~~~~~~~~--~~~~~l~i~  194 (283)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|||+.  ..+      .           ...++.+...  .....|.|.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            345567889999999999998765  5789999863  211      0           0235555443  345689999


Q ss_pred             CCCCCCCEEEEEEEEeCCcee---EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeE
Q psy14060        195 QVFMEDSGVFAVIAENRGGKA---KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVY  269 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~  269 (283)
                      ++..+|+|.|.|.+.+..+..   .....|.|....      ..+|.+........+..|+.++|.|.+.+. |.+ .|.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~  164 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK------TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  164 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC------CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC------CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEE
Confidence            999999999999999864311   122466665311      134555543333346789999999999985 766 899


Q ss_pred             EeeCCEEe
Q psy14060        270 WLKVSSLS  277 (283)
Q Consensus       270 W~~~g~~l  277 (283)
                      |+++|+.+
T Consensus       165 W~k~g~~~  172 (261)
T 2xqy_G          165 WNSGSLSS  172 (261)
T ss_dssp             EGGGTCCT
T ss_pred             EecCCCcC
Confidence            99999765

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.56  E-value=1.9e-14  Score=112.61  Aligned_cols=133  Identities=14%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--EecC----------------CCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT----------------SSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      +....+..|+++.|.|.+.+.+  .+.+.|||+.  ..+.                ...++.+...  ....+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4557889999999999998764  4789999853  1110                1134555443  235689999999


Q ss_pred             CCCCEEEEEEEEeCCce---eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEee
Q psy14060        198 MEDSGVFAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLK  272 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~  272 (283)
                      .+|+|.|.|.+.|..+.   ......|.|....      ..+|.+...+....+..|+.+.|.|.+.|. |.| .+.|++
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  160 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ------TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS  160 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC------CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCC------CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence            99999999999886421   1123566665311      124555543323345789999999999987 877 999999


Q ss_pred             CCEEec
Q psy14060        273 VSSLSD  278 (283)
Q Consensus       273 ~g~~l~  278 (283)
                      +|..+.
T Consensus       161 ~g~~~~  166 (215)
T 1c5d_H          161 GALSSD  166 (215)
T ss_dssp             GTTCCS
T ss_pred             CCccCc
Confidence            987643

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.55  E-value=3e-14  Score=96.47  Aligned_cols=87  Identities=17%  Similarity=0.313  Sum_probs=73.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+....+..|+.+.|.|.+.+.| +.+.|+|++..+....++.+.    ...|.|.++..+|+|.|+|.+.|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEET
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccC
Confidence            466676677788999999999999999987 899999999988766665543    346999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~l~V   94 (95)
T 2ckn_A           83 SGSDTTYFSVNV   94 (95)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999887777765

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.55  E-value=6.3e-14  Score=111.36  Aligned_cols=138  Identities=16%  Similarity=0.171  Sum_probs=94.6

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c------------CCCCCeEEEE-eCCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I------------TSSPDFQIHT-FSTKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~------------~~~~~~~~~~-~~~~~~l~i~~~~~  198 (283)
                      ...+....+..|+.+.|.|.+.. +.+.+.|||++  ..   +            ....++.+.. .....+|.|.++..
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            44566788999999999999954 67899999863  11   1            0123444432 23456899999999


Q ss_pred             CCCEEEEEEEEeCCc---e--eEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEee-CCC-eeEE
Q psy14060        199 EDSGVFAVIAENRGG---K--AKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISAT-KPL-DVYW  270 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g---~--~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W  270 (283)
                      +|+|.|.|.+.+..+   .  ......|.|.....    ...+|.+.. .+....+..|+.++|.|.+.|. |.+ .+.|
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  157 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR----QVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSW  157 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG----GCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEE
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCC----CCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEE
Confidence            999999999998742   1  11224566664100    002565544 3344456689999999999986 655 8999


Q ss_pred             eeCCEEecC
Q psy14060        271 LKVSSLSDV  279 (283)
Q Consensus       271 ~~~g~~l~~  279 (283)
                      ++||+.+..
T Consensus       158 ~~~g~~~~~  166 (238)
T 1bec_A          158 WVNGKEVHS  166 (238)
T ss_dssp             EETTEEECT
T ss_pred             EECCEECCC
Confidence            999998754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.54  E-value=4.9e-14  Score=114.06  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=93.6

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeec-----CCEEEEEeCC--Ee---cC---------CCCCeEEEEeCCEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRED--FP---IT---------SSPDFQIHTFSTKSILIM  193 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-----~~~~~W~k~~--~~---~~---------~~~~~~~~~~~~~~~l~i  193 (283)
                      .+.+...+..+.+.+|++++|.|.+.+.+     .+.+.|||+.  ..   +.         ...++.+.......+|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45566667778899999999999998876     4789999853  11   10         124566655566778999


Q ss_pred             cCCCCCCCEEEEEEEEeCCce-eEEEEEEEEEeccCCCCCCCCCC--------------eEEecCCceEEcCCCeEEEEE
Q psy14060        194 RQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPP--------------SFLTTISSAVINVGQLARFDA  258 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~p--------------~~~~~~~~~~v~~g~~v~L~C  258 (283)
                      .++..+|+|.|+|.+.|..+. ......|.|...... ..+..||              .++..+....+.+|++++|.|
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~-~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADD-AKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC-------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccC-CCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            999999999999999987542 122345555532100 0000112              123344567899999999999


Q ss_pred             EEEeeCC--CeeEEeeC
Q psy14060        259 KISATKP--LDVYWLKV  273 (283)
Q Consensus       259 ~~~g~p~--~~v~W~~~  273 (283)
                      .+.+.+.  +.+.|+++
T Consensus       174 ~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EEESSCGGGCEEEEEEE
T ss_pred             EecCccccccEEEEEEe
Confidence            9998753  68999985

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.54  E-value=7.9e-15  Score=110.61  Aligned_cols=120  Identities=12%  Similarity=0.096  Sum_probs=85.9

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC--C--------CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS--S--------PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~--~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ...+..|++++|.|.+.+ |.+.+.|+|++..+..  .        .+.++.......+|.|.++..+|+|.|.|.+.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            356788999999999854 8889999998864321  0        0001222223346999999999999999999988


Q ss_pred             CceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        212 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .+  ...+.|.|....       ..|.+......        ..|.|.+.+.|.|.+.|++||+.+..
T Consensus        83 ~~--~~~~~L~V~~~~-------~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~  133 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMV-------SKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRS  133 (171)
T ss_dssp             CS--CEEEEEEEECCC-------CCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEE
T ss_pred             CC--cEEEEEEEECcC-------CCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcC
Confidence            77  556777777531       23444432211        27999999989999999999998754

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=99.90  Aligned_cols=96  Identities=25%  Similarity=0.409  Sum_probs=81.8

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.+.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            357888888888999999999999999999999999999998887655544333 2335689999999999999999999


Q ss_pred             eCCceeEEEEEEEEEec
Q psy14060        210 NRGGKAKCSANLVVEEK  226 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~~  226 (283)
                      |..|.....+.|.|...
T Consensus        87 n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             CSSCEEEECCEEEEECC
T ss_pred             CCCCEEEEEEEEEEeCC
Confidence            99999888889988863

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.54  E-value=3.3e-14  Score=110.57  Aligned_cols=127  Identities=8%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             cCCCcEEEEEEEeeec----CCEEEEEeCCEecCCCCC-eEEEEeCCE----EEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        146 FEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPD-FQIHTFSTK----SILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~p----~~~~~W~k~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..|+.+.|.|.+.|.+    ...+.|+|++..+..... ......+..    ..|.|......|.|.|+|.+.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            7899999999999875    249999999987653210 001111111    1233323333449999999999877643


Q ss_pred             EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEec
Q psy14060        217 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSD  278 (283)
Q Consensus       217 ~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~  278 (283)
                      ....+.+...      ...+|.+...+.......|..+.|.|.+.|. |.+ .|.|++||+.+.
T Consensus        96 ~~~~v~~~~~------~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A           96 IEKTISKAKG------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             EEEEECCCCS------CCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eEEEeccCCC------CCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            3333321000      0135665544333222356679999999995 443 899999999875

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.54  E-value=1.4e-13  Score=109.33  Aligned_cols=154  Identities=9%  Similarity=0.070  Sum_probs=94.7

Q ss_pred             eeeecCcEEEEEEEccCc-cceEEee-----------------------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVRKIT-----------------------ATETTEMEH-KGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~~~~-----------------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|+.++|.|.+.+.. .+. |..                       ...++.+.. ......|.|.+++.+|+|.|.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (238)
T 1bec_A           10 VAVTGGKVTLSCQQTNNHNNMY-WYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYF   88 (238)
T ss_dssp             EEETTCCEEEEEEESSCCSEEE-EEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCcEEEEEEeCCCCceEE-EEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEE
Confidence            367788999999985432 222 221                       123444432 245689999999999999999


Q ss_pred             EEEEecc--------eeeeeeccCC----CCCCeEEe-cCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC
Q psy14060        114 ITERKYY--------ALSDLSEQKP----AKPPVFTK-KIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP  178 (283)
Q Consensus       114 C~a~n~~--------~~~~~~~~~~----~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~  178 (283)
                      |.+.+..        +......+..    ..+|.+.. .+....+..|+.+.|.|.+.|. |.+ .+.|++++..+....
T Consensus        89 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~  168 (238)
T 1bec_A           89 CASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGV  168 (238)
T ss_dssp             EEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTE
T ss_pred             EEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCce
Confidence            9998863        1111111111    23565543 3344456679999999999986 655 899999998876532


Q ss_pred             Ce---EEEEeCCE----EEEEEcCCCCCC-CEEEEEEEEeCCc
Q psy14060        179 DF---QIHTFSTK----SILIMRQVFMED-SGVFAVIAENRGG  213 (283)
Q Consensus       179 ~~---~~~~~~~~----~~l~i~~~~~~d-~G~Y~C~a~n~~g  213 (283)
                      ..   .....+..    +.|.|......| .|.|+|.+.|...
T Consensus       169 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          169 STDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             ecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            11   01122222    123333333333 6789999999753

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.54  E-value=1.4e-13  Score=109.05  Aligned_cols=133  Identities=11%  Similarity=0.053  Sum_probs=87.3

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E---ec---C----------CCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PI---T----------SSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~---~~---~----------~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      +....+..|++++|.|.+.+.+  .+.+.|||..  .   .+   .          ...++.+...  ....+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4557889999999999998764  5789999853  1   11   0          1245555543  345689999999


Q ss_pred             CCCCEEEEEEEEeCC--ce----eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCC-CeEEEEEEEEee-CCC-ee
Q psy14060        198 MEDSGVFAVIAENRG--GK----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG-QLARFDAKISAT-KPL-DV  268 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~--g~----~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g-~~v~L~C~~~g~-p~~-~v  268 (283)
                      .+|+|.|+|.+.+..  +.    ......|.|....      ..+|.+........+..| +.++|.|.+.|. |.| .+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS------ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC------CBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCC------CCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            999999999998321  11    1123466665410      134555432222345578 999999999986 776 89


Q ss_pred             EEee-CCEEec
Q psy14060        269 YWLK-VSSLSD  278 (283)
Q Consensus       269 ~W~~-~g~~l~  278 (283)
                      .|++ ||+.+.
T Consensus       161 ~W~~~~g~~l~  171 (232)
T 1dn0_B          161 SWKYKNNSDIS  171 (232)
T ss_dssp             EEEETTSCEEC
T ss_pred             EEEcCCCCcee
Confidence            9999 998764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.54  E-value=8.8e-15  Score=114.37  Aligned_cols=164  Identities=13%  Similarity=0.023  Sum_probs=103.8

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecC--CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeecc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITAT--ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQ  128 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~  128 (283)
                      .+.+|+.+.|.|.+.|.|...       ..+...  .++.+...+....|.|.++..+|+|.|+|.+.|..+.. ....+
T Consensus        29 ~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  108 (215)
T 3mtr_A           29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL  108 (215)
T ss_dssp             EECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEE
Confidence            366788999999999988433       233322  45666665668899999999999999999999998843 22333


Q ss_pred             CCCCCCeEEecCCceeecCCCcEEEEEEEee----ecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCE
Q psy14060        129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG----DPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       129 ~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g----~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  202 (283)
                      .+..+|.......  ....+..+.|.|....    .|..  .+.|.+++..........+........+.|.++...+.|
T Consensus       109 ~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y  186 (215)
T 3mtr_A          109 VQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY  186 (215)
T ss_dssp             EECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEE
T ss_pred             EECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEE
Confidence            3333332211111  1233567888887422    1222  367887765321100000000011146999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEE
Q psy14060        203 VFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      .|.|.|.|..|....+..+.+.
T Consensus       187 ~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          187 AVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             EEEEEEEESSCBCCCCCCEEEE
T ss_pred             EEEEEEEeCCcccCcccceeeE
Confidence            9999999999987666555554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.1e-14  Score=97.31  Aligned_cols=93  Identities=26%  Similarity=0.504  Sum_probs=78.0

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ...+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+..   ...|.|.++..+|+|.|+|.+
T Consensus         5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A            5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---QGTLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT---TCCEEEESCCTTTCCEEEEEE
T ss_pred             CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC---CCEEEEccCCcccCEEEEEEE
Confidence            34688888888888999999999999999999999999999988763 33333322   235999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEe
Q psy14060        209 ENRGGKAKCSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~  225 (283)
                      .|..|.....+.|.|.+
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           82 TSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             ECSSCCCBCCEEEEEES
T ss_pred             EcCCCCEEEEEEEEEec
Confidence            99999888888888875

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.53  E-value=1.7e-14  Score=100.05  Aligned_cols=96  Identities=21%  Similarity=0.347  Sum_probs=70.8

Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.  .....|.|.++..+|+|.|+|.
T Consensus         5 v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             ------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE--TTTTEEEECSCCGGGCEEEEEE
T ss_pred             ECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe--CCCcEEEEeecCcccCEEEEEE
Confidence            44556788888888889999999999999999999999999999888765554443  3345799999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEe
Q psy14060        208 AENRGGKAKCSANLVVEE  225 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v~~  225 (283)
                      +.|..|.....+.|.|..
T Consensus        83 a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EC----CEEEEEEEEEEC
T ss_pred             EEeCCCceEEEEEEEEeC
Confidence            999999999999999885

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=3.5e-14  Score=113.95  Aligned_cols=153  Identities=11%  Similarity=0.053  Sum_probs=93.4

Q ss_pred             eeeecCcEEEEEEEccCccce-EEee---c--------------------CC-CEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKIT---A--------------------TE-TTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~---~--------------------~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|++++|.|.+.+.+... .|..   .                    .. ++.+...+... |.|.+++.+|+|.|+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~Y~   90 (253)
T 3to4_D           12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRTLY   90 (253)
T ss_dssp             EEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEEEE
T ss_pred             EEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeEEE
Confidence            366788999999887666211 2211   0                    01 44443322222 999999999999999


Q ss_pred             EEEEecce---------ee-eeecc---CCCCCCeEEec-CCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCC
Q psy14060        114 ITERKYYA---------LS-DLSEQ---KPAKPPVFTKK-IQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSS  177 (283)
Q Consensus       114 C~a~n~~~---------~~-~~~~~---~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~  177 (283)
                      |.+.+..+         .. .+...   ....+|.+... +....+..|+.++|.|.+.| +|.+ .+.|++++..+...
T Consensus        91 C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~  170 (253)
T 3to4_D           91 CTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG  170 (253)
T ss_dssp             EEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             EEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCc
Confidence            99875422         11 11111   12245555432 23333445689999999998 5666 89999999887542


Q ss_pred             CCeE---EE-----EeCC---EEEEEEcCCCCCC-CEEEEEEEEeCC
Q psy14060        178 PDFQ---IH-----TFST---KSILIMRQVFMED-SGVFAVIAENRG  212 (283)
Q Consensus       178 ~~~~---~~-----~~~~---~~~l~i~~~~~~d-~G~Y~C~a~n~~  212 (283)
                      ....   ..     ..+.   .+.|.|......| .|.|+|.+.|..
T Consensus       171 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          171 VSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             eecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            1100   00     0111   1357777776666 779999999875

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.53  E-value=3.9e-13  Score=107.50  Aligned_cols=160  Identities=8%  Similarity=0.083  Sum_probs=98.9

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++|+|.|.+.+..    .+.          ..+              ....|+.+..+  ....+|.|.+++.+|
T Consensus        10 ~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   89 (248)
T 3u2s_H           10 VVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVED   89 (248)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHH
Confidence            366788999999997622    222          111              01245555432  457889999999999


Q ss_pred             CeEEEEEEEecc-------------------------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-
Q psy14060        109 DGYYAITERKYY-------------------------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-  160 (283)
Q Consensus       109 ~G~Y~C~a~n~~-------------------------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-  160 (283)
                      +|.|.|.+.+..                         +......+  ....+|.+........+..|+.+.|.|.+.+. 
T Consensus        90 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~  169 (248)
T 3u2s_H           90 TATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  169 (248)
T ss_dssp             CEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEB
T ss_pred             CEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEE
Confidence            999999887631                         11111112  22345655544444455679999999999874 


Q ss_pred             c-CCEEEEEeCCEecCC---------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        161 P-LPTIKWFREDFPITS---------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       161 p-~~~~~W~k~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      | .+.+.|++++..+..         ...+.+     .+.|.|......| |.|+|.+.|..+.......+.+.
T Consensus       170 P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          170 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             CCCeEEEEeECCccCceeecCceECCCCCEEE-----EEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            5 457999998864321         111211     2358888888788 99999999988776655555443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.53  E-value=1.1e-14  Score=115.92  Aligned_cols=155  Identities=10%  Similarity=0.052  Sum_probs=97.3

Q ss_pred             eeecCcEEEEEEEccC---cc-ce-EEeecCCCEE-------EEEcC----CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGD---KE-IV-RKITATETTE-------MEHKG----KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~---~~-i~-~~~~~~~~~~-------~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.+|+.++|.|.+.|.   |. +. .|........       ....+    ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            4578899999999887   52 22 4443221110       00111    24579999999999999999999887632


Q ss_pred             ---eeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEeCC---EEEE
Q psy14060        124 ---DLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTFST---KSIL  191 (283)
Q Consensus       124 ---~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l  191 (283)
                         ....+  .+..+|.+...+.......|+.+.|.|.+.|. |. ..+.|+|+|..+.....  .....++.   .+.|
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l  188 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKL  188 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEE
Confidence               12112  44567776655444333457889999999984 54 48999999998753211  11111111   1235


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCce
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .|......|.|.|+|.+.|....
T Consensus       189 ~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          189 NVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEChhhcCCCCEEEEEEECCCCC
Confidence            55544445789999999998643

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=1.2e-13  Score=110.12  Aligned_cols=139  Identities=15%  Similarity=0.199  Sum_probs=92.2

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--Ee---c-----------C---CCCCeEEEEeC--CEEEEE
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FP---I-----------T---SSPDFQIHTFS--TKSILI  192 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~~---~-----------~---~~~~~~~~~~~--~~~~l~  192 (283)
                      +...+..+.+..|++++|.|.+.+.  +.+.+.|||+.  ..   +           .   ...++.+....  ...+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            4445667889999999999999875  56789999843  11   1           0   23455554433  467899


Q ss_pred             EcCCCCCCCEEEEEEEEeCCc-----e--eEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEEEee-
Q psy14060        193 MRQVFMEDSGVFAVIAENRGG-----K--AKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISAT-  263 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g-----~--~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~-  263 (283)
                      |.++..+|+|.|.|.+.+...     .  ......|.|......   ...+|.... .+....+..|+.++|.|.+.|. 
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~---~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD---ADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCC---SCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEES
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccC---CCcCCCceEECCChhhcccCCCceEEEEEeeEE
Confidence            999999999999999988631     1  112356777642100   000222211 1333445679999999999987 


Q ss_pred             CC-CeeEEeeCCE-Ee
Q psy14060        264 KP-LDVYWLKVSS-LS  277 (283)
Q Consensus       264 p~-~~v~W~~~g~-~l  277 (283)
                      |. +.+.|+++|. .+
T Consensus       161 P~~~~v~W~~~~~~~l  176 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTI  176 (242)
T ss_dssp             SCCEEEEEEESSSCCC
T ss_pred             CCCeEEEEEcCCCEee
Confidence            54 6899999987 44

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.53  E-value=4e-14  Score=113.85  Aligned_cols=132  Identities=15%  Similarity=0.100  Sum_probs=84.3

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c---C-----------CCCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---T-----------SSPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~---~-----------~~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      +....+..|++++|.|.+.+.+  .+.+.|||..  ..   +   .           ...++.+...  ....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4556889999999999998765  5789999853  11   1   0           1235555543  34678999999


Q ss_pred             CCCCCEEEEEEEEeCCc----------e---eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee
Q psy14060        197 FMEDSGVFAVIAENRGG----------K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT  263 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g----------~---~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~  263 (283)
                      ..+|+|.|+|.+.+..+          .   ......|.|....      ..+|.+........+..|+.++|.|.+.|.
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~------~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDY  160 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC------CBCCEECCCCC-----------CCCEEEEE
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC------CcCCcEEEecCcccccCCCcEEEEEEEeeE
Confidence            99999999999998764          1   1122466665311      134655443333346789999999999986


Q ss_pred             -CCC-eeEEeeCCEEe
Q psy14060        264 -KPL-DVYWLKVSSLS  277 (283)
Q Consensus       264 -p~~-~v~W~~~g~~l  277 (283)
                       |.| .|.|+++|+.+
T Consensus       161 ~P~pi~v~W~k~g~~~  176 (257)
T 3bn9_D          161 FPEPVTVSWNSGALTS  176 (257)
T ss_dssp             BSSCCEEEETTTTCCS
T ss_pred             ECCCcEEEEeeCCCcC
Confidence             777 89999999864

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.52  E-value=9.6e-14  Score=109.78  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=94.2

Q ss_pred             eeeecCcEEEEEEEccC--c--cce--EE--------ee-------------cCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGD--K--EIV--RK--------IT-------------ATETTEMEHK--GKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~--~--~i~--~~--------~~-------------~~~~~~~~~~--~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|++++|.|.+.+.  +  .+.  +.        +.             ...|+.+...  .+...|.|.+++.+|+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (230)
T 1ypz_F           12 SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDE   91 (230)
T ss_dssp             EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhC
Confidence            36678899999999874  2  332  11        10             1244554432  2567999999999999


Q ss_pred             eEEEEEEEec-------ceeeeeeccC--C-----CCCCeE-EecCCceeecCCCcEEEEEEEeee-cC-CEEEEEe-CC
Q psy14060        110 GYYAITERKY-------YALSDLSEQK--P-----AKPPVF-TKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFR-ED  171 (283)
Q Consensus       110 G~Y~C~a~n~-------~~~~~~~~~~--~-----~~~p~~-~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k-~~  171 (283)
                      |.|.|.+.+.       .+......+.  .     ..+|.. +..+....+..|+.+.|.|.+.+. |. +.++|++ ++
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g  171 (230)
T 1ypz_F           92 AIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDG  171 (230)
T ss_dssp             SEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTS
T ss_pred             EEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEccCC
Confidence            9999999874       1111111121  0     012221 122333345568899999999986 75 5999999 77


Q ss_pred             EecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        172 FPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       172 ~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ..+.......+...+.    .+.|.|..... + |.|+|.+.|....
T Consensus       172 ~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          172 NTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             SCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             eEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            6664321101111222    24688887765 4 9999999998654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=1.5e-13  Score=95.39  Aligned_cols=92  Identities=17%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecC---CEEEEEeCCEecC---CCCCeEEEEe--C----CEEEEEEcCCCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPIT---SSPDFQIHTF--S----TKSILIMRQVFMED  200 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~~~~~~---~~~~~~~~~~--~----~~~~l~i~~~~~~d  200 (283)
                      .|.|+..+..+.+..|+.++|.|.+.|.|.   |.+.|||++....   ...++.+...  .    ....|.|.++..+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            466777788889999999999999999988   9999999873221   1234443321  1    14579999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +|.|+|.+.|..|...+.+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999998875

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.52  E-value=9.5e-13  Score=103.98  Aligned_cols=162  Identities=12%  Similarity=0.107  Sum_probs=101.9

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++|+|.|.+.+..    .+.          ..+              ....|+.+..+  ....+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (230)
T 3n9g_H           12 RKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDT   91 (230)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhC
Confidence            66788999999997521    111          111              01246665433  3578899999999999


Q ss_pred             eEEEEEEEecc-----------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEec
Q psy14060        110 GYYAITERKYY-----------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPI  174 (283)
Q Consensus       110 G~Y~C~a~n~~-----------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~  174 (283)
                      |.|.|.+.+..           +......+  ....+|.+........+..|+.+.|.|.+.+. | .+.+.|  ++..+
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~  169 (230)
T 3n9g_H           92 AVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGAL  169 (230)
T ss_dssp             EEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTB
T ss_pred             EEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCccc
Confidence            99999987643           11111122  22345655544444456689999999999884 4 357999  44433


Q ss_pred             CCCCC-e-EEEEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        175 TSSPD-F-QIHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       175 ~~~~~-~-~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      ..... . .....+    ..+.|.|......| |.|+|.+.|..+.......+.+.
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          170 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            22100 0 000001    12468899999889 99999999988776666665554

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=93.44  Aligned_cols=87  Identities=30%  Similarity=0.387  Sum_probs=74.6

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+.|...+....+..|+.+.|.|.+ +.|.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+    
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence            3566667788899999999999999 77889999999999988777888888888889999999999999999999    


Q ss_pred             ceeEEEEEEEEE
Q psy14060        213 GKAKCSANLVVE  224 (283)
Q Consensus       213 g~~~~~~~l~v~  224 (283)
                      |.....+.|.|.
T Consensus        83 g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 GSSKVKFDLKVI   94 (95)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            556666777765

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.51  E-value=1.7e-13  Score=93.60  Aligned_cols=89  Identities=28%  Similarity=0.520  Sum_probs=77.6

Q ss_pred             CCCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.|...+.+ ..+..|+.+.|.|.+. .|.+.+.|||++..+....++.+...+....|.|.++..+|+|.|+|.+  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            47788877776 5788999999999998 6899999999999998877888888888889999999999999999999  


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                        |.....+.|.|.+
T Consensus        83 --g~~~~~~~l~V~~   95 (100)
T 2yuv_A           83 --GDEKCSTELFVRS   95 (100)
T ss_dssp             --TTEEEEEEEEECC
T ss_pred             --CCceEEEEEEEec
Confidence              6667778888875

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=3.6e-14  Score=98.11  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=78.4

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.|...+.+..+..|+.+.|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+.|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            47888888899999999999999999987777 99999999988777888888888889999999999999999999997


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                        .....+.|.|..
T Consensus        86 --~~~~~~~l~V~~   97 (106)
T 2dlt_A           86 --ALSLSAKLNFLE   97 (106)
T ss_dssp             --CCCCCBCEEEEC
T ss_pred             --CceEEEEEEEEE
Confidence              444455666654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=1.3e-13  Score=97.42  Aligned_cols=92  Identities=18%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeee---cCCEEEEEeCCEec-C--CCCCeEEEEe--C----CEEEEEEcCCCCCCC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFPI-T--SSPDFQIHTF--S----TKSILIMRQVFMEDS  201 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~---p~~~~~W~k~~~~~-~--~~~~~~~~~~--~----~~~~l~i~~~~~~d~  201 (283)
                      +.|+..+....+.+|+.++|.|.+.+.   |.|.+.|||+.... .  ...++.+...  .    ....|.|.++...|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            456777788899999999999999875   78999999974211 1  1234444321  1    146899999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|+|++.|..+.....+.|.|..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999986

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.51  E-value=1.1e-13  Score=108.59  Aligned_cols=131  Identities=9%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             cCCceeecCCCcEEEEEEEeee--cCCEEEEEeCCE--e---c---C-------------CCCCeEEEEe--CCEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGD--PLPTIKWFREDF--P---I---T-------------SSPDFQIHTF--STKSILIM  193 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~--~---~---~-------------~~~~~~~~~~--~~~~~l~i  193 (283)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|||...  .   +   .             ...++.+...  ....+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            3455778999999999999874  367999997421  1   0   0             1135555443  34568999


Q ss_pred             cCCCCCCCEEEEEEEEeCC--ceeEEEEEEEEEeccCCCCCCCCCCeEE-ecCCceEEcCCCeEEEEEEEEe-eCC-C-e
Q psy14060        194 RQVFMEDSGVFAVIAENRG--GKAKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARFDAKISA-TKP-L-D  267 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~--g~~~~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~-~-~  267 (283)
                      .++..+|+|.|+|.+.+..  ........|.|....      ..+|.+. ..+...  .+|+.++|.|.+.+ .|. + .
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~------~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~  157 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS------PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLS  157 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC------CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEE
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC------CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEE
Confidence            9999999999999999863  122233456664210      1355555 233333  78999999999998 665 4 8


Q ss_pred             eEEeeCCEEe
Q psy14060        268 VYWLKVSSLS  277 (283)
Q Consensus       268 v~W~~~g~~l  277 (283)
                      +.|+++|+.+
T Consensus       158 v~W~~~g~~~  167 (221)
T 3m8o_H          158 VTWSESGQGV  167 (221)
T ss_dssp             EEESCCSTTC
T ss_pred             EEEEECCEEC
Confidence            9999999766

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.51  E-value=1e-13  Score=124.30  Aligned_cols=151  Identities=8%  Similarity=0.043  Sum_probs=98.9

Q ss_pred             eeeecCcEEEEEEE-ccCccce-EEeec------------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         59 EIHTAKSQQVQKEK-KGDKEIV-RKITA------------------TETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        59 ~v~~g~~v~l~C~~-~g~~~i~-~~~~~------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .+.+|+.++|.|.+ .+.|... .|...                  ..+..+..   ..+|.|.+++.+|+|.|+|.+.|
T Consensus       377 ~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          377 TARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP---NGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT---TSCEEESSCCGGGCEEEEEEEEC
T ss_pred             ceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC---CceEEEeccccccCeEEEEEEEc
Confidence            36678899999998 6666322 22221                  22333332   23799999999999999999999


Q ss_pred             cceee--eeeccCCCC---CCeEEecCCceeecCCCc-EEEEEEEee-ecCCEEEEEeCCEecCCCC-CeEEEE---e--
Q psy14060        119 YYALS--DLSEQKPAK---PPVFTKKIQPCRAFEQDQ-ARFEVEFDG-DPLPTIKWFREDFPITSSP-DFQIHT---F--  185 (283)
Q Consensus       119 ~~~~~--~~~~~~~~~---~p~~~~~~~~~~~~~g~~-v~l~C~~~g-~p~~~~~W~k~~~~~~~~~-~~~~~~---~--  185 (283)
                      ..+..  ....+.+..   +|.+..  ....+..+.. +.|.|.+.+ +|.|.++|++++..+.... .+.+..   .  
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence            87743  223333322   343332  2223455544 567999988 5999999999999886532 332211   1  


Q ss_pred             C-----CEEEEEEcCCC-CCCCEEEEEEEEeCCce
Q psy14060        186 S-----TKSILIMRQVF-MEDSGVFAVIAENRGGK  214 (283)
Q Consensus       186 ~-----~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~  214 (283)
                      .     ..++|.|..+. ..+.|.|+|.+.|..+.
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            1     13579999988 44588999999998643

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.51  E-value=3.6e-13  Score=94.13  Aligned_cols=94  Identities=20%  Similarity=0.322  Sum_probs=80.0

Q ss_pred             eccCCC-CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        126 SEQKPA-KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       126 ~~~~~~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ..+.+. .||.+...+....+..|+.+.|.|.+.+.  |.+.|+|++..+....++.+...+....|.|.++..+|+|.|
T Consensus        11 ~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
T 2edh_A           11 AMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEY   88 (113)
T ss_dssp             CCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEE
T ss_pred             EEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEE
Confidence            345555 35688888888899999999999999774  789999999999887888888888888999999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEe
Q psy14060        205 AVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|.+    +.....+.|.|..
T Consensus        89 ~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           89 LCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             EEEE----TTEEEEEEEEECC
T ss_pred             EEEe----CCCCEEEEEEEeC
Confidence            9999    6677778888875

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=8.7e-14  Score=95.62  Aligned_cols=89  Identities=20%  Similarity=0.388  Sum_probs=78.3

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .||.+...+....+..|+.+.|.|.+.+ |.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            4778888888899999999999999998 88899999999999887788888888888999999999999999999988 


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                         ....+.|.|..
T Consensus        85 ---~~~~~~l~V~~   95 (103)
T 2edf_A           85 ---SKSTASLHVEE   95 (103)
T ss_dssp             ---CEEEEEEEECC
T ss_pred             ---CCcEEEEEEeC
Confidence               35667777765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.50  E-value=1.7e-13  Score=94.23  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=65.9

Q ss_pred             cCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE--EEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        146 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ..+..+.|.|.+.|.|.|.++|+|++..+....+...  ...+   ....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            4577899999999999999999999999887655322  2211   1345999999999999999999999999998888


Q ss_pred             EEEEe
Q psy14060        221 LVVEE  225 (283)
Q Consensus       221 l~v~~  225 (283)
                      |.|..
T Consensus        94 l~V~~   98 (103)
T 1wwb_X           94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEECC
Confidence            88764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.50  E-value=2.7e-14  Score=115.28  Aligned_cols=125  Identities=14%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEe---eecCCEEEEEeCCEecCCC------------------CCeEEEE--eCCEEE
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFD---GDPLPTIKWFREDFPITSS------------------PDFQIHT--FSTKSI  190 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~~~~~W~k~~~~~~~~------------------~~~~~~~--~~~~~~  190 (283)
                      +.+...+....+.+|+.+.|.|.+.   +.+.+.+.|++++......                  .++.+..  .....+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3445556678899999999999997   6677889999965432211                  1222110  012256


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCCceeEE--EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE---EeeCC
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRGGKAKC--SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI---SATKP  265 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~---~g~p~  265 (283)
                      |.|.++..+|+|.|+|.+.|..+....  ...|.|..         ..      +....+.+|+.+.|.|.+   .+.|.
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---------~~------p~~~~v~~G~~v~L~C~~~~~~~~p~  150 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---------EE------PRDLRVRVGDTTQMRCSIQSTEEKRV  150 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC---------CC------CSEEEEETTCCEEECCBCEESSSSCC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec---------cC------CCccccccCCcEEEEEEecCCCCCCc
Confidence            999999999999999999997655433  34444442         12      235678899999999999   45688


Q ss_pred             CeeEEeeC
Q psy14060        266 LDVYWLKV  273 (283)
Q Consensus       266 ~~v~W~~~  273 (283)
                      +.+.|+++
T Consensus       151 ~~v~W~~~  158 (268)
T 3mj6_A          151 TKVNWMFS  158 (268)
T ss_dssp             CEEEEEEE
T ss_pred             cceEEEec
Confidence            89999993

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=114.06  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=89.9

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---CCC---------C-CeEEEEeCCEEEEEEcCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---TSS---------P-DFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~~~---------~-~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      ..+....+..|+++.|.|.+.+.+.+.+.|||..  ..   +   ...         . ++.+....... |.|.++..+
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~   84 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMS   84 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCS
T ss_pred             eCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChh
Confidence            3456678999999999999888788899999831  11   0   000         0 23232222222 999999999


Q ss_pred             CCEEEEEEEEeCCc------eeEEEEEEEEEeccCCCCCCCCCCeEEec-CCceEEcCCCeEEEEEEEEe-eCCC-eeEE
Q psy14060        200 DSGVFAVIAENRGG------KAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISA-TKPL-DVYW  270 (283)
Q Consensus       200 d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W  270 (283)
                      |+|.|+|.+.+..+      .......+.|....    ....+|.+... +....+..|+.++|.|.+.| .|.+ .++|
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~----~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W  160 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCS----TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCC----CCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence            99999999987643      11122456665310    00134555432 23333446789999999998 5666 8999


Q ss_pred             eeCCEEecC
Q psy14060        271 LKVSSLSDV  279 (283)
Q Consensus       271 ~~~g~~l~~  279 (283)
                      ++||+.+..
T Consensus       161 ~k~g~~l~~  169 (253)
T 3to4_D          161 WVNGKEVHS  169 (253)
T ss_dssp             EETTEEECT
T ss_pred             EECCEECCC
Confidence            999999864

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.7e-14  Score=96.79  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ++.|...+.+..+.+|+.+.|.|.+.+.|. +.+.|||++..+....++.+...+..++|.|.++..+|+|.|+|.+   
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   84 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV---   84 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE---
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE---
Confidence            556777788899999999999999998764 4799999999998877888888888889999999999999999988   


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                       +....++.|.|..
T Consensus        85 -~~~~~~a~L~V~~   97 (104)
T 2eny_A           85 -RGLTSKASLIVRE   97 (104)
T ss_dssp             -TTEEEEECEEEEC
T ss_pred             -CCeeEEEEEEEeC
Confidence             3456778888885

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.50  E-value=8.2e-14  Score=105.91  Aligned_cols=119  Identities=12%  Similarity=0.120  Sum_probs=85.1

Q ss_pred             CceeecCCCcEEEEEEEee-ecCCEEEEEeC-CEecC------------CC--CCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFRE-DFPIT------------SS--PDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~-~~~~~------------~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ....+.+|++++|.|.+.+ .+.+.+.|+|. +..+.            ..  .++.+  .....+|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            4567889999999998854 34689999994 32211            11  23333  22344699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEEec
Q psy14060        205 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSLSD  278 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~l~  278 (283)
                      .|.+.+.. .....+.|.|....       ..|.+..        .+..+.|.|.+ .| |.|.|.|+++|..+.
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~-------~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMV-------SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCC-------CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             EEEEEcCC-eEEEEEEEEEECCC-------CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence            99998776 55666778877521       2344332        34669999999 66 999999999998874

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.50  E-value=3.1e-14  Score=110.51  Aligned_cols=119  Identities=12%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             ecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +..|++++|.|.+   |.+.+.|+|++..+...       ......|.|.++..+|+|.|.|.+.+... .  .+.+.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS-K--PLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC-C--CEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC-e--eEEEEEE
Confidence            4579999999998   78999999999876431       11234599999999999999999755322 1  1333332


Q ss_pred             e------ccCC--------------C-CCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060        225 E------KRQG--------------G-RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       225 ~------~~~~--------------~-~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~  279 (283)
                      .      ....              + .....++.+...+ .....+|+.++|.|.  +.|.|.+.|++||..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             C------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            0      0000              0 0000022222222 222338999999998  789999999999998864

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=1.4e-13  Score=94.61  Aligned_cols=88  Identities=24%  Similarity=0.425  Sum_probs=75.2

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      |+.|...+....+..|+.+.|.|.+.+ |.+.+.|+|++..+....  ++.+...+....|.|.++..+|+|.|+|.+.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            334666778889999999999999988 779999999999998766  66888877888999999999999999999977


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                          ....+.|.|..
T Consensus        86 ----~~~~~~l~V~~   96 (103)
T 1x44_A           86 ----GQSSAKLSVDL   96 (103)
T ss_dssp             ----EEEEEEEEEEC
T ss_pred             ----CcEEEEEEEeC
Confidence                46667888875

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.6e-13  Score=94.09  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             CCCCCeEEecCCc---eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        130 PAKPPVFTKKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       130 ~~~~p~~~~~~~~---~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +..+|.+...+..   ..+..|+.+.|.|.+. .|.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|
T Consensus         7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T 2cpc_A            7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC   85 (113)
T ss_dssp             CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEE
Confidence            3446655555544   5788999999999996 68899999999999987778888777777889999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEe
Q psy14060        207 IAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+.|    ....+.|.|..
T Consensus        86 ~a~n----~~~~~~l~V~~  100 (113)
T 2cpc_A           86 EIDD----ESASFTVTVTE  100 (113)
T ss_dssp             ESSS----CEEEEEEEEEC
T ss_pred             EEec----CcEEEEEEEec
Confidence            9988    45667788875

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.50  E-value=2.5e-13  Score=95.91  Aligned_cols=79  Identities=18%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-------CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-------TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      .+..+.|.|.+.|.|.|.++|+|+|..+....+..+....       ....|.|.++...|+|.|+|.|.|..|.....+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            5678999999999999999999999999877665443221       245799999999999999999999999998888


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus        94 ~l~v~~   99 (126)
T 1he7_A           94 MAAFMD   99 (126)
T ss_dssp             EECCCS
T ss_pred             EEEEEc
Confidence            887775

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.49  E-value=1.6e-13  Score=95.10  Aligned_cols=89  Identities=18%  Similarity=0.351  Sum_probs=75.9

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.|...+....+..|+.+.|.|.+.+.  |.+.|+|++..+....++.+...+..+.|.|.++..+|+|.|+|.+. 
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-   82 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG-   82 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET-
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc-
Confidence            357777777788899999999999999764  78999999999887778888888888899999999999999999993 


Q ss_pred             CCceeEEEEEEEEEe
Q psy14060        211 RGGKAKCSANLVVEE  225 (283)
Q Consensus       211 ~~g~~~~~~~l~v~~  225 (283)
                         .....+.|.|..
T Consensus        83 ---n~~~~~~l~V~~   94 (108)
T 2dm7_A           83 ---QERTSATLTVRA   94 (108)
T ss_dssp             ---TEEEEEECEEEC
T ss_pred             ---CCEEEEEEEEec
Confidence               356677888876

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.7e-13  Score=93.38  Aligned_cols=89  Identities=18%  Similarity=0.320  Sum_probs=76.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC----------CeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP----------DFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      .+|.|...+.+..+.+|+.+.|.|.+++  .+.+.|||||..+..+.          ++.+...+..+.|.|.++..+|+
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            4677888999999999999999999997  78899999999998776          77777777788999999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|+|...   +...+++.|.|..
T Consensus        85 G~Y~~~~~---~~~~ssA~L~V~~  105 (112)
T 2e6q_A           85 GALVGFSC---PGVQDSAALTIQE  105 (112)
T ss_dssp             SEEEEEEE---TTEEEEEEEEEEC
T ss_pred             ccEEEEEE---CCeeEEEEEEEeC
Confidence            99977443   3345688999986

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.49  E-value=1.7e-13  Score=109.79  Aligned_cols=139  Identities=15%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E--e-cC------------CCCCeEEEEe-CCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F--P-IT------------SSPDFQIHTF-STKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~--~-~~------------~~~~~~~~~~-~~~~~l~i~~~~  197 (283)
                      +...+....+..|+++.|.|.+.. +.+.+.|||+.  .  . +.            ...++.+... .....|.|.++.
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            444566788999999999999854 67899999853  1  1 10            1134444321 234579999999


Q ss_pred             CCCCEEEEEEEEeCC---ceeEEEEEEEEEeccCCCCCCCCCCeEEec-CCceEEcCCCeEEEEEEEEee-CCC-eeEEe
Q psy14060        198 MEDSGVFAVIAENRG---GKAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISAT-KPL-DVYWL  271 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~  271 (283)
                      .+|+|.|.|.+.+..   ........|.|.....    ...+|.+... +....+..|+.++|.|.+.|. |.+ .+.|+
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLK----NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  160 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccC----CCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence            999999999999862   1111223566653100    0135666543 333445679999999999986 654 89999


Q ss_pred             eCCEEecC
Q psy14060        272 KVSSLSDV  279 (283)
Q Consensus       272 ~~g~~l~~  279 (283)
                      +||+.+..
T Consensus       161 ~~g~~l~~  168 (252)
T 1oga_E          161 VNGKEVHS  168 (252)
T ss_dssp             ETTEEECS
T ss_pred             ECCEECCC
Confidence            99998764

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.49  E-value=1e-13  Score=124.30  Aligned_cols=126  Identities=15%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             eeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCC------------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        143 CRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITS------------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..+..|++++|.|.+ .+.|.+.++|+|++..+..            ..+..+..   ..+|.|.+++.+|+|.|+|.+.
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP---NGSLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT---TSCEEESSCCGGGCEEEEEEEE
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC---CceEEEeccccccCeEEEEEEE
Confidence            567899999999999 7778899999998653211            11222221   1269999999999999999999


Q ss_pred             eCCcee-EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCe-EEEEEEEEe-eCCCeeEEeeCCEEecCC
Q psy14060        210 NRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQL-ARFDAKISA-TKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       210 n~~g~~-~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~-v~L~C~~~g-~p~~~v~W~~~g~~l~~~  280 (283)
                      |..+.. .....|.|....       ..|.+..  ....+..|.. +.|.|.+.+ +|.|.|+|++||++|...
T Consensus       453 n~~~~~~~~~~~l~V~~~~-------~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~  517 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIP-------GKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN  517 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCC-------CCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT
T ss_pred             cCCCceeEEEEEEEEEcCC-------CCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC
Confidence            998886 677888887631       2344433  2233555555 567999998 599999999999998753

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.49  E-value=7.3e-14  Score=95.40  Aligned_cols=83  Identities=20%  Similarity=0.376  Sum_probs=66.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      ....+..|+.+.|.|.+.|.|.+.+.|++++..+....+. ..........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            3467889999999999999999999999999988654321 111222334799999999999999999999999988777


Q ss_pred             EEEE
Q psy14060        220 NLVV  223 (283)
Q Consensus       220 ~l~v  223 (283)
                      .|.|
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.48  E-value=1.8e-14  Score=113.03  Aligned_cols=127  Identities=15%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             ceeecCCCcEEEEEEEeeecC-----CEEEEEeCCEecC-------------CCCCeEEEE---eCCEEEEEEcCCCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDPL-----PTIKWFREDFPIT-------------SSPDFQIHT---FSTKSILIMRQVFMED  200 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~-----~~~~W~k~~~~~~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d  200 (283)
                      .+.+..|+.+.|.|.+.+.|.     +.+.|++++....             ...++.+..   .....+|.|.++..+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456789999999999988654     6899999864320             011222111   0014569999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEee-CCEEe
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLK-VSSLS  277 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~-~g~~l  277 (283)
                      +|.|+|.+.+.. .......|.|....       .+|.+...+ ...+..|+.+.|.|.+ .+.|.|.+.|++ +|..+
T Consensus        84 ~G~Y~C~~~~~~-~~~~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~  153 (222)
T 4i0k_A           84 EGSYTCFVSIQD-FDSAAVSLQVAAPY-------SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL  153 (222)
T ss_dssp             CSCEEEEEEECC-CCCCCCCCCCCBCC-------CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             CEEEEEEEEeCC-CceEEEEEEEEcCC-------CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence            999999999863 33334455554321       235555433 4467899999999999 889999999999 55544

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.4e-14  Score=99.77  Aligned_cols=95  Identities=21%  Similarity=0.310  Sum_probs=77.2

Q ss_pred             ccCCCCCC-eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEE-EeCCEEEEEEcCCCCCCCEEE
Q psy14060        127 EQKPAKPP-VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-TFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       127 ~~~~~~~p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      .+.+..+| .+...+.+..+.+|+.+.|.|.+.+.|.|.+.|+|++..+....++.+. ..+..+.|.|.++..+|+|.|
T Consensus         6 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (115)
T 2cr6_A            6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI   85 (115)
T ss_dssp             CCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEE
T ss_pred             EEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEE
Confidence            34454444 6777888899999999999999999899999999999988776665554 234556799999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEe
Q psy14060        205 AVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|.+    |.....+.|.|..
T Consensus        86 ~C~~----g~~~~~~~L~V~~  102 (115)
T 2cr6_A           86 YFEA----GDQRASAALRVTE  102 (115)
T ss_dssp             EEEE----TTEECCEEEEEEC
T ss_pred             EEEE----CCeeEEEEEEEEC
Confidence            9994    6667778888885

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=94.14  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=74.7

Q ss_pred             CCCeEEecCCc---eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        132 KPPVFTKKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~---~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+|.+...+..   ..+..|+.+.|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            35656655555   688999999999999998888 99999999998777888887788889999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEe
Q psy14060        209 ENRGGKAKCSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~  225 (283)
                      .|..+    .+.|.|..
T Consensus        85 ~n~~~----~~~l~V~~   97 (104)
T 2e6p_A           85 EGVSA----FFGVTVQD   97 (104)
T ss_dssp             SSCCC----CEEEEEEC
T ss_pred             CCceE----EEEEEEcC
Confidence            88743    46666764

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.48  E-value=9e-14  Score=110.02  Aligned_cols=154  Identities=12%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             eeecCcEEEEEEEccC-c-c-ce-EEeecCCCE-------EEE-EcC---CEEEEEEccCCCCCCeEEEEEEEecceee-
Q psy14060         60 IHTAKSQQVQKEKKGD-K-E-IV-RKITATETT-------EME-HKG---KIQERVVDASELDDDGYYAITERKYYALS-  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~-~-~-i~-~~~~~~~~~-------~~~-~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-  123 (283)
                      +.+|+.++|.|.+.|. | + +. .|...+...       ... .++   ....|.|.++..+|+|.|+|.+.|..+.. 
T Consensus        25 v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~  104 (231)
T 2w59_A           25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLP  104 (231)
T ss_dssp             HHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSSC
T ss_pred             cccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCCc
Confidence            4578899999999984 4 2 34 444332221       101 111   13469999999999999999999876531 


Q ss_pred             eeeccC----CCCCCeEEec-CCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCCeE--EE----------E
Q psy14060        124 DLSEQK----PAKPPVFTKK-IQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPDFQ--IH----------T  184 (283)
Q Consensus       124 ~~~~~~----~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~~~--~~----------~  184 (283)
                      ....+.    ...+|.+... +....+ .+..+.|.|.+.|. | .+.+.|+|+|..+.......  ..          .
T Consensus       105 ~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~  183 (231)
T 2w59_A          105 LSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGG  183 (231)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---
T ss_pred             eEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCC
Confidence            111222    1245655433 222222 35579999999985 4 37999999999886543111  11          1


Q ss_pred             e-CC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        185 F-ST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       185 ~-~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      + +.   .+.|.|......|.|.|+|.+.|....
T Consensus       184 d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          184 DGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             CCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            1 12   245778777778899999999998654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.48  E-value=5.5e-13  Score=106.94  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=87.4

Q ss_pred             cCCceeecCCCcEEEEEEEeee--cCCEEEEEeCCE-----ec--------------CCCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGD--PLPTIKWFREDF-----PI--------------TSSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~-----~~--------------~~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+.+|++++|.|.+.+.  +...+.|||...     .+              ....++.+...  ....+|.|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3456788999999999999763  457899998421     11              01134555433  3466799999


Q ss_pred             CCCCCCEEEEEEEEeCC----ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC-eeE
Q psy14060        196 VFMEDSGVFAVIAENRG----GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVY  269 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~----g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~  269 (283)
                      +..+|+|.|+|.+.+..    ........|.|....      ..+|.+........+..|+.+.|.|.+.+ .|.+ .+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  159 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC------CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEE
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC------CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEE
Confidence            99999999999998752    222233456665210      13566664444455678999999999998 6766 899


Q ss_pred             EeeCCEE
Q psy14060        270 WLKVSSL  276 (283)
Q Consensus       270 W~~~g~~  276 (283)
                      |+++|..
T Consensus       160 W~~~~~~  166 (253)
T 3liz_H          160 WNSGSLS  166 (253)
T ss_dssp             EGGGTBC
T ss_pred             EEeCCee
Confidence            9999973

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.48  E-value=3e-13  Score=110.19  Aligned_cols=204  Identities=7%  Similarity=-0.034  Sum_probs=69.0

Q ss_pred             CCcccccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCcc---ce-EEeecCC
Q psy14060         11 LQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKE---IV-RKITATE   86 (283)
Q Consensus        11 ~~~~~~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~---i~-~~~~~~~   86 (283)
                      +.+|.+.+. +.|.+....-..+....|.|..+|..   +.+..... .+.+|+.++|.|.+.|...   +. .|+....
T Consensus        54 l~~v~~~~~-y~C~~~~~~~~~~~~v~l~V~~~P~~---v~I~~~~~-~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~  128 (291)
T 1mq8_A           54 LSNVQEDSQ-PMCYSNCPDGQSTAKTFLTVYWTPER---VELAPLPS-WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK  128 (291)
T ss_dssp             EESCCSCCC-CEEEEECSSCEEEEECEEEECBCCSC---CCBCCCCS-BCCSSCCCEEEEEECCCBSTTTEEEEEESSSS
T ss_pred             EEecccCCe-EEEEEEcCCccEEEEEEEEEecCCCC---CEEecCCc-cccCCCCEEEEEEecCccCCCCcEEEEEECCE
Confidence            346766664 77888765556677888999887652   22222222 3888999999999998752   22 5665554


Q ss_pred             CEEEEE---cCCEEEEEEccCCCCCCeEEEEEEEeccee---------eeeeccCCCCCCeE-EecCCceeecCCCcEEE
Q psy14060         87 TTEMEH---KGKIQERVVDASELDDDGYYAITERKYYAL---------SDLSEQKPAKPPVF-TKKIQPCRAFEQDQARF  153 (283)
Q Consensus        87 ~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---------~~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l  153 (283)
                      ...-..   ......|.+......|.+.|+|.|.|..+.         +....+.+..+|.. .....+..+.+|+.++|
T Consensus       129 ~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l  208 (291)
T 1mq8_A          129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV  208 (291)
T ss_dssp             EEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------
T ss_pred             EeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEE
Confidence            333221   112345655544444445999999987441         22334556555422 11111235778999999


Q ss_pred             EEEEeeecCC---EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCC---CCCC--CEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        154 EVEFDGDPLP---TIKWFREDFPITSSPDFQIHTFSTKSILIMRQV---FMED--SGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       154 ~C~~~g~p~~---~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|.+.|.+++   .+.|+++|..+....    ...++  .+.+...   ..++  .+.|.|.+.+..........|.|..
T Consensus       209 ~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          209 VCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEcCCCCCCcccEEEEEECCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence            9999987543   589999998876421    11111  1222222   3434  5677788877554455666777765

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.48  E-value=2.9e-13  Score=105.67  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=85.8

Q ss_pred             CceeecCCCcEEEEEEEeeecCCE---EEEEeCCEecCC----------------CCCeEEE-------EeCCEEEEEEc
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPT---IKWFREDFPITS----------------SPDFQIH-------TFSTKSILIMR  194 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~---~~W~k~~~~~~~----------------~~~~~~~-------~~~~~~~l~i~  194 (283)
                      ....+..|++++|.|.+.+.+.+.   +.|+|++..+..                ..+....       ......+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            346778999999999998876654   799997643210                0111110       01123469999


Q ss_pred             CCCCCCCEEEEEEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEee
Q psy14060        195 QVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLK  272 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~  272 (283)
                      ++..+|+|.|+|.+.|..+..... ..+.+..          +|.+...+.......++.+.+.|.+ .+.|.+.+.|++
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~  158 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA----------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWIS  158 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB----------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEEC
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeec----------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEE
Confidence            999999999999999887765444 3444442          5555555555566677777777765 467778999999


Q ss_pred             CCEEe
Q psy14060        273 VSSLS  277 (283)
Q Consensus       273 ~g~~l  277 (283)
                      ++..+
T Consensus       159 ~~~~~  163 (225)
T 4fmk_A          159 SLGGE  163 (225)
T ss_dssp             SSCCE
T ss_pred             CCccc
Confidence            87543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=4.9e-13  Score=94.24  Aligned_cols=95  Identities=20%  Similarity=0.339  Sum_probs=72.8

Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC----CEEEEEEcCCCCCCCEE
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS----TKSILIMRQVFMEDSGV  203 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~  203 (283)
                      +.+..+|.+...... .  ......|.|.+.|.|.|.+.|+|++..+....+..+....    ....|.|.++..+|+|.
T Consensus         3 L~V~~pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   79 (118)
T 1wwc_A            3 LTVYYPPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   79 (118)
T ss_dssp             -CCCCCCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEEecCCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEE
Confidence            456667776544222 2  2256789999999999999999999999876655543322    34579999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEEe
Q psy14060        204 FAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |+|.|.|..|.....+.|.|..
T Consensus        80 Y~C~a~N~~G~~~~~~~l~v~~  101 (118)
T 1wwc_A           80 YTLIAKNPLGTANQTINGHFLK  101 (118)
T ss_dssp             EEEEEEETTEEEEEEEEECCSC
T ss_pred             EEEEEECCCCeEeeEEEEEEcc
Confidence            9999999999988888887664

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.5e-14  Score=97.30  Aligned_cols=89  Identities=25%  Similarity=0.528  Sum_probs=75.4

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC----CeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP----DFQIHTFSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      .+|.|...+.+..+..|+.+.|.|.+.+.| +.+.|+|++..+....    ++.+...+....|.|.++..+|+|.|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   85 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI   85 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEE
Confidence            467788888889999999999999999978 9999999999887655    66777777788899999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEe
Q psy14060        208 AENRGGKAKCSANLVVEE  225 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v~~  225 (283)
                      +.|    ....+.|.|.+
T Consensus        86 a~n----~~~~~~l~V~~   99 (101)
T 2edk_A           86 TNG----GQCEAELIVEE   99 (101)
T ss_dssp             CSS----CEECCBEEEEC
T ss_pred             EcC----CcEEEEEEEeC
Confidence            976    34456677664

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.47  E-value=3.2e-13  Score=108.23  Aligned_cols=155  Identities=11%  Similarity=0.067  Sum_probs=95.8

Q ss_pred             eeeecCcEEEEEEEccCc-cceEEee-----------------------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVRKIT-----------------------ATETTEMEH-KGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~~~~-----------------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|++++|.|.+.... .+. |..                       ...++.+.. ......|.|.+++.+|+|.|.
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~v~-W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~   92 (252)
T 1oga_E           14 FRKEGQNVTLSCEQNLNHDAMY-WYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYL   92 (252)
T ss_dssp             EEETTCCEEECCEECSCCSEEE-EEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEE
T ss_pred             EEcCCCcEEEEEEeCCCCCEEE-EEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEE
Confidence            367788999999985432 222 211                       123444432 134568999999999999999


Q ss_pred             EEEEecc------eeeeeeccC----CCCCCeEEec-CCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCe
Q psy14060        114 ITERKYY------ALSDLSEQK----PAKPPVFTKK-IQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDF  180 (283)
Q Consensus       114 C~a~n~~------~~~~~~~~~----~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~  180 (283)
                      |.+.+..      +......+.    ...+|.+... +....+..|+.+.|.|.+.|. |.+ .+.|++++..+......
T Consensus        93 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~  172 (252)
T 1oga_E           93 CASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVST  172 (252)
T ss_dssp             EEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEE
T ss_pred             EEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCccc
Confidence            9998851      111111111    1246655443 333445578999999999985 654 89999999887543111


Q ss_pred             E--EE-----EeCC----EEEEEEcCCCCC-CCEEEEEEEEeCCce
Q psy14060        181 Q--IH-----TFST----KSILIMRQVFME-DSGVFAVIAENRGGK  214 (283)
Q Consensus       181 ~--~~-----~~~~----~~~l~i~~~~~~-d~G~Y~C~a~n~~g~  214 (283)
                      .  ..     ..+.    .+.|.|...... +.|.|+|.+.|....
T Consensus       173 ~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          173 DPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             CSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            0  00     0111    134777665543 578999999997654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.47  E-value=2.3e-13  Score=111.47  Aligned_cols=135  Identities=15%  Similarity=0.194  Sum_probs=89.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--EecC-----------------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT-----------------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+.+|++++|.|.+.+.+  .+.+.|||+.  ..+.                 ...++.+...  ....+|.|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            34567899999999999998865  5789999853  1110                 0134444332  3456899999


Q ss_pred             CCCCCCEEEEEEEEeCC-c--eeE--EEEEEEEEecc-----CCC-CCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC
Q psy14060        196 VFMEDSGVFAVIAENRG-G--KAK--CSANLVVEEKR-----QGG-RGGVVPPSFLTTISSAVINVGQLARFDAKISATK  264 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~-g--~~~--~~~~l~v~~~~-----~~~-~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p  264 (283)
                      +..+|+|.|+|.+.|.. |  ...  ....|.|....     ... .....++.+...+....+.+|++++|.|.+.+.|
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999999874 2  111  12356655300     000 0000134455556677899999999999998877


Q ss_pred             CC------eeEEeeC
Q psy14060        265 PL------DVYWLKV  273 (283)
Q Consensus       265 ~~------~v~W~~~  273 (283)
                      .+      .+.|+|+
T Consensus       188 ~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             EETTTTEECEEEEEE
T ss_pred             ccccccceeEEEEEE
Confidence            65      8999996

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.47  E-value=9.9e-14  Score=107.82  Aligned_cols=153  Identities=10%  Similarity=0.011  Sum_probs=87.9

Q ss_pred             eecCcEEEEEEEccCc----cce-EEeecCCCE-------EEEEcCCE----EEEEEccCCCCCCeEEEEEEEecceee-
Q psy14060         61 HTAKSQQVQKEKKGDK----EIV-RKITATETT-------EMEHKGKI----QERVVDASELDDDGYYAITERKYYALS-  123 (283)
Q Consensus        61 ~~g~~v~l~C~~~g~~----~i~-~~~~~~~~~-------~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~~~~-  123 (283)
                      .+|+.++|.|.+.|.+    .+. .|...+...       .....++.    ..|.|......|+|.|+|.+.|..+.. 
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            5788999999999864    122 443322110       01111121    123333333445999999999987632 


Q ss_pred             e--eecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEe-CC----EEEEE
Q psy14060        124 D--LSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTF-ST----KSILI  192 (283)
Q Consensus       124 ~--~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~-~~----~~~l~  192 (283)
                      .  ...+  .+..+|.+...........|..+.|.|.+.|. |. +.+.|+++|..+........... +.    ...|.
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~  175 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT  175 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEE
Confidence            1  1212  34456766544333222345679999999985 54 49999999988753211111111 11    12355


Q ss_pred             EcCCCCCCCEEEEEEEEeCCc
Q psy14060        193 MRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +......|.|.|+|.+.|...
T Consensus       176 i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          176 VDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEHHHHHTTCCEEEEEECTTS
T ss_pred             ECHHHcCCCCEEEEEEEcCCc
Confidence            555555679999999999764

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=3.3e-13  Score=92.89  Aligned_cols=89  Identities=26%  Similarity=0.520  Sum_probs=73.1

Q ss_pred             CCCCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        131 AKPPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       131 ~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ..+|.|+..+.. ..+..|+.+.|.|.+ +.|.+.+.|+|++..+... .++.+...+....|.|.++..+|+|.|+|.+
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            346777777666 789999999999999 6788899999999998876 6778877777889999999999999999999


Q ss_pred             EeCCceeEEEEEEEEE
Q psy14060        209 ENRGGKAKCSANLVVE  224 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~  224 (283)
                          +.....+.|.|.
T Consensus        92 ----~~~~~~~~l~V~  103 (104)
T 1pd6_A           92 ----GGEKCSTELFVK  103 (104)
T ss_dssp             ----TTEEECCEEEEE
T ss_pred             ----CCCcEEEEEEEe
Confidence                334455566554

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.46  E-value=7.8e-13  Score=112.28  Aligned_cols=154  Identities=12%  Similarity=0.076  Sum_probs=101.8

Q ss_pred             eeecCcEEEEEEEccC---cc-ce-EEeecCCCEE-------EE-EcC---CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGD---KE-IV-RKITATETTE-------ME-HKG---KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~---~~-i~-~~~~~~~~~~-------~~-~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +..|+.++|.|.+.|.   |. +. .|........       .. ..+   ....|.|.+++.+|+|.|+|.+.+.....
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6788999999999987   32 22 3433321110       00 011   24479999999999999999998876521


Q ss_pred             ---eeec--cCCCCCCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCCeEE--EEeCC---EEEE
Q psy14060        124 ---DLSE--QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPDFQI--HTFST---KSIL  191 (283)
Q Consensus       124 ---~~~~--~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~~~~--~~~~~---~~~l  191 (283)
                         ....  +.+..+|.+...+.......|+.++|.|.+.|. | .+.++|+|++..+........  ..++.   .+.|
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L  339 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKL  339 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEE
Confidence               1111  245567877766666555668899999999985 4 468999999988743221111  11111   2357


Q ss_pred             EEcCCCCCCCEEEEEEEEeCCc
Q psy14060        192 IMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .|......|.|.|+|.+.|..-
T Consensus       340 ~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          340 NVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEcHHHhCCCCcEEEEEEeCCC
Confidence            7777777789999999998753

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=5.5e-13  Score=103.66  Aligned_cols=146  Identities=10%  Similarity=0.068  Sum_probs=87.1

Q ss_pred             eeeecCcEEEEEEEccCccceEEee------------------cCCCEEEEEc---CCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIVRKIT------------------ATETTEMEHK---GKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~~~~~------------------~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .+.+|++++|.|.+.+......|..                  ...|+.+...   .+...|.|.+++.+|+|.|.|.+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (207)
T 1ypz_E           12 SLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD   91 (207)
T ss_dssp             EEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence            3677889999999987542112211                  2345555543   567899999999999999999988


Q ss_pred             ecce------------eeeeeccCCC------CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCC
Q psy14060        118 KYYA------------LSDLSEQKPA------KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSS  177 (283)
Q Consensus       118 n~~~------------~~~~~~~~~~------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~  177 (283)
                      +..+            ......+.+.      .+|.+..       ..+ .+.|.|.+.+. |. +.+.|+++ ..+...
T Consensus        92 ~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~  162 (207)
T 1ypz_E           92 TWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEF  162 (207)
T ss_dssp             CBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEECS-SEEEEC
T ss_pred             cCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCC
Confidence            7631            1111122221      2333221       111 36899999875 54 79999999 655432


Q ss_pred             CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       178 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ........+....+. ......|.|.|+|.+.|..+.
T Consensus       163 ~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          163 DPAIVISPSGKYSAV-KLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             CCEEEECTTSSEEEE-ECEEESSTTTCEEEEEETTEE
T ss_pred             ccceEEcCCCcEEEE-EeecccCCCcEEEEEEECCcc
Confidence            211111112222222 222236789999999998754

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=95.55  Aligned_cols=93  Identities=24%  Similarity=0.398  Sum_probs=73.5

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeee---cCCEEEEEeCCEe-cCC--CCCeEEEEe-CC-----EEEEEEcCCCCCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFP-ITS--SPDFQIHTF-ST-----KSILIMRQVFMED  200 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~---p~~~~~W~k~~~~-~~~--~~~~~~~~~-~~-----~~~l~i~~~~~~d  200 (283)
                      .+.|+..+....+.+|+.+.|.|.+.+.   |.|.+.|||+... +..  ..++.+... .+     ...|.|.++...|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4567777888899999999999999875   7899999997422 221  234444321 11     4689999999999


Q ss_pred             CEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        201 SGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|.|+|.+.|..|..++.+.|.|.+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            9999999999999999999999885

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.45  E-value=2.9e-12  Score=100.96  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=96.1

Q ss_pred             eeeecCcEEEEEEEccCc----cce--E--------Ee--------------ecCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV--R--------KI--------------TATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~--~--------~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+.|+|.|.+.+..    .+.  +        .+              ....|+.+..+  ....+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (226)
T 3mlr_H           11 VKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASD   90 (226)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGG
T ss_pred             EEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCccc
Confidence            366788999999997632    222  1        11              01235554432  357889999999999


Q ss_pred             CeEEEEEEEecc------------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCE
Q psy14060        109 DGYYAITERKYY------------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDF  172 (283)
Q Consensus       109 ~G~Y~C~a~n~~------------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~  172 (283)
                      +|.|.|.+.+..            +......+  ....+|.+........+..|+.+.|.|.+.+. | .+.+.|  ++.
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~  168 (226)
T 3mlr_H           91 TGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSG  168 (226)
T ss_dssp             CEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred             CEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCc
Confidence            999999886542            11111112  22345655543344455689999999999884 4 468999  333


Q ss_pred             ecCC-----------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        173 PITS-----------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       173 ~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      .+..           ...+.+     .+.|.|......| |.|+|.+.|..+......
T Consensus       169 ~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~  220 (226)
T 3mlr_H          169 ALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  220 (226)
T ss_dssp             TCCTTEEECCCEECTTSCEEE-----EEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEE
T ss_pred             cccCCeEeCCcEECCCCCEEE-----EEEEEECHhHcCC-CeEEEEEEECCCCcCeEE
Confidence            2211           111111     2368888888888 999999999876654433

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.45  E-value=1.8e-13  Score=94.06  Aligned_cols=89  Identities=19%  Similarity=0.323  Sum_probs=77.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.++..+|+|.|+|.    
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----
Confidence            46777777788899999999999999998888 9999999998877788888888888999999999999999998    


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                      .|.....+.|.|..
T Consensus        82 ~g~~~~~~~l~V~~   95 (103)
T 2e7b_A           82 FGDQTTSATLTVTA   95 (103)
T ss_dssp             CSSCBCCBCEEEEC
T ss_pred             ECCcEEEEEEEEEe
Confidence            45566667788875

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.44  E-value=9.6e-13  Score=88.17  Aligned_cols=83  Identities=14%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ++.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....         ...|.|.++..+|+|.|+|.+.|..
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~   73 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDR   73 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC---------CCeEEECCCCHHhCEEEEEEEEcCC
Confidence            5667777778889999999999999999999999999999876543         2369999999999999999999999


Q ss_pred             ceeE-EEEEEEEE
Q psy14060        213 GKAK-CSANLVVE  224 (283)
Q Consensus       213 g~~~-~~~~l~v~  224 (283)
                      |... ..+.|.|.
T Consensus        74 g~~~s~~~~l~V~   86 (91)
T 3bfo_A           74 DSQDSKKVEIIID   86 (91)
T ss_dssp             CEEECCCEEEEEC
T ss_pred             CCEEeeeEEEEEe
Confidence            8654 33555554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.44  E-value=4.8e-14  Score=100.11  Aligned_cols=100  Identities=17%  Similarity=0.259  Sum_probs=82.3

Q ss_pred             eeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCC--CCCeEEE--EeCC--EEEEEEcCCC
Q psy14060        125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITS--SPDFQIH--TFST--KSILIMRQVF  197 (283)
Q Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~--~~~~~~~--~~~~--~~~l~i~~~~  197 (283)
                      ...+.+..+|.+.. +....+..|+.+.|.|.+.|.|.|. +.|++++..+..  ..++.+.  ....  .+.|.|.++.
T Consensus         6 ~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   84 (122)
T 2cry_A            6 SGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIV   84 (122)
T ss_dssp             CCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCC
T ss_pred             EEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCC
Confidence            34567778898887 7778899999999999999999986 999999988875  3455553  2233  5689999999


Q ss_pred             CCCC-EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        198 MEDS-GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       198 ~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+|. |.|+|.|.|..|.....+.|.|..
T Consensus        85 ~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           85 RADFQTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             HHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             hhhCCceEEEEEECCCCeEEEEEEEEECC
Confidence            9999 999999999999988888877764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.44  E-value=4.3e-12  Score=101.86  Aligned_cols=163  Identities=10%  Similarity=0.095  Sum_probs=97.9

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++|+|.|.+.+..    .+.          ..+              ....|+.+..+  .+..+|.|.+++.+|
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D  113 (256)
T 3sob_H           34 LVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAED  113 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCccc
Confidence            366788999999997532    221          011              01245555432  357889999999999


Q ss_pred             CeEEEEEEEecc--------------eeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeC
Q psy14060        109 DGYYAITERKYY--------------ALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFRE  170 (283)
Q Consensus       109 ~G~Y~C~a~n~~--------------~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~  170 (283)
                      +|.|.|.+.+..              +......+  ....+|.+........+..|+.+.|.|.+.+. | .+.+.|  +
T Consensus       114 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~  191 (256)
T 3sob_H          114 TAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N  191 (256)
T ss_dssp             CEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             CEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--C
Confidence            999999987642              11111122  23345665544444456789999999999874 5 357999  4


Q ss_pred             CEecCCCC---CeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        171 DFPITSSP---DFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       171 ~~~~~~~~---~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      +..+....   .......+   ..+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          192 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            43332110   00000001   12368889888889 99999999988766655555443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.44  E-value=6.1e-13  Score=112.96  Aligned_cols=136  Identities=11%  Similarity=0.047  Sum_probs=90.5

Q ss_pred             EecCCcee-ecCCCcEEEEEEEeee-cC---CEEEEEeCCEecCCCCC---eEEE--EeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        137 TKKIQPCR-AFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPD---FQIH--TFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       137 ~~~~~~~~-~~~g~~v~l~C~~~g~-p~---~~~~W~k~~~~~~~~~~---~~~~--~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +..+.... +..|++++|.|.+.|. |.   ..+.|+|++..+.....   ....  .......|.|..+..+|.|.|+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C  250 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC  250 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence            33444344 7789999999999987 33   36999999866532110   0000  01123469999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC--CCeeEEeeCCEEec
Q psy14060        207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWLKVSSLSD  278 (283)
Q Consensus       207 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g~~l~  278 (283)
                      .+.+..+.......+.+...      ...+|.+...+.......|+.++|.|.+.|.+  .+.|+|++||+.+.
T Consensus       251 ~~~~~~~~~~~~~~v~~~~~------~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  318 (376)
T 2aty_A          251 RVNSAAFPAPIEKTISKTKG------RPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  318 (376)
T ss_pred             EEecCCCCCceEEEEcCCCC------CCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence            99998764333333322100      01467777666555555689999999999853  34899999999874

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.44  E-value=4.1e-13  Score=94.44  Aligned_cols=95  Identities=21%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC-----CeEEEEeCCEEEEEE--cCCCCCCCE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-----DFQIHTFSTKSILIM--RQVFMEDSG  202 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~-----~~~~~~~~~~~~l~i--~~~~~~d~G  202 (283)
                      +..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....     .......+....+.|  .++..+|+|
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            3457888888888899999999999999999999999999999876432     112212222222222  256789999


Q ss_pred             EEEEEEEeCCceeEEE-EEEEEE
Q psy14060        203 VFAVIAENRGGKAKCS-ANLVVE  224 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~-~~l~v~  224 (283)
                      .|+|.|.|..|...+. +.+.+.
T Consensus        86 ~Y~C~a~N~~G~~~s~~~~l~~~  108 (117)
T 2v9t_A           86 VYVCVARNYLGEAVSHDASLEVA  108 (117)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEEeCccceEeeeEEEEhh
Confidence            9999999999987654 555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=3.4e-13  Score=113.88  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      +....+..|+.+.|.|.+.| |.|.+.|++++..+...    .++.+ . .  .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~-~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~  327 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-R-N--GDLFFKKVQVEDGGVYTCYAMGETFNE  327 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-E-T--TEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-e-c--CeEEEeecCcccCEEEEEEEecCCCcc
Confidence            45568899999999999999 99999999987654332    24444 2 2  259999999999999999999999999


Q ss_pred             EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeE
Q psy14060        216 KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY  269 (283)
Q Consensus       216 ~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~  269 (283)
                      ...+.+.|..          .+           ..|+.++|.|.+.|+|.|+|+
T Consensus       328 ~~~~~l~V~~----------~~-----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          328 TLSVELKVYN----------FT-----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEES----------SC-----------CC-------------------
T ss_pred             EEEEEEEEEe----------ee-----------ccCCceEEEEEeCCCCCCccc
Confidence            9888888864          22           578899999999999999874

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=3.6e-13  Score=106.47  Aligned_cols=141  Identities=15%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             EecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--Ee---cC-------------CCCCeEEEEeC--CEEEEEEc
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FP---IT-------------SSPDFQIHTFS--TKSILIMR  194 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~~---~~-------------~~~~~~~~~~~--~~~~l~i~  194 (283)
                      ...+..+.+..|++++|.|.+.+.  +.+.+.|||..  ..   +.             ...++.+....  ...+|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            344566788999999999999874  56789999853  11   10             12334444322  45689999


Q ss_pred             CCCCCCCEEEEEEEEeC--Cc--eeEEEEEEEEEeccC-CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-Ce
Q psy14060        195 QVFMEDSGVFAVIAENR--GG--KAKCSANLVVEEKRQ-GGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LD  267 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~--~g--~~~~~~~l~v~~~~~-~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~  267 (283)
                      ++..+|+|.|.|.+.+.  ..  .......|.|..... ........|.+.. +....+..|+.++|.|.+.|. |. +.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeE
Confidence            99999999999999874  11  111224677762100 0000001122222 333445678999999999987 75 58


Q ss_pred             eEEee-CCEEec
Q psy14060        268 VYWLK-VSSLSD  278 (283)
Q Consensus       268 v~W~~-~g~~l~  278 (283)
                      +.|++ ||+.+.
T Consensus       164 v~W~~~~g~~l~  175 (230)
T 1ypz_F          164 VYWKEKDGNTIL  175 (230)
T ss_dssp             EEEECTTSSCBC
T ss_pred             EEEEccCCeEcc
Confidence            99999 887664

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.44  E-value=2.1e-12  Score=118.86  Aligned_cols=182  Identities=13%  Similarity=0.060  Sum_probs=114.0

Q ss_pred             CcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCC-CeEEEEEEEecceeeeee-----ccCCCCCCeE
Q psy14060         64 KSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDD-DGYYAITERKYYALSDLS-----EQKPAKPPVF  136 (283)
Q Consensus        64 ~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~~~~-----~~~~~~~p~~  136 (283)
                      ..+.|.|.+.|.|... .|...+.....   .....+.|..+...+ ++.|.|.+.+..|.....     ......+|.+
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~~~---~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~  168 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPTRT---WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHF  168 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCCSS---CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEE
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcCCc---eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccc
Confidence            3699999999988322 33333322111   123345565442333 478888777776632211     1123356777


Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEE-EE--eCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIK-WF--REDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~-W~--k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      . .+.+..+..|+.+.|.|.+.|.|.|.+. |+  +++..+.......+........|.|.++...|.|.|.|.|.|..|
T Consensus       169 ~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G  247 (731)
T 2v5y_A          169 L-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG  247 (731)
T ss_dssp             C-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTE
T ss_pred             c-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCC
Confidence            6 5667889999999999999999999887 77  677655322111111111235799999999999999999999999


Q ss_pred             e-eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE
Q psy14060        214 K-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI  260 (283)
Q Consensus       214 ~-~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~  260 (283)
                      . ....+.|.|..          +|.....+.... .....+.|.|..
T Consensus       248 ~~~s~~~~l~V~~----------~P~~~~~p~~~~-~~~~~v~l~w~~  284 (731)
T 2v5y_A          248 VGISNYAELVVKE----------PPVPIAPPQLAS-VGATYLWIQLNA  284 (731)
T ss_dssp             EEECCCEEEEEEC----------CCCBSSCCEEEE-ECSSCEEEECCC
T ss_pred             CcceeeEEEEEec----------CCCCCCCcceec-cCCceEEEEeCC
Confidence            7 66667788875          232222221122 234667888865

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.43  E-value=6.4e-12  Score=98.70  Aligned_cols=183  Identities=12%  Similarity=0.166  Sum_probs=118.1

Q ss_pred             cCCeeeecCcEEEEEEEccC-c---cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeee-eccC
Q psy14060         56 HGKEIHTAKSQQVQKEKKGD-K---EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDL-SEQK  129 (283)
Q Consensus        56 ~~~~v~~g~~v~l~C~~~g~-~---~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~~  129 (283)
                      .+..+..|+.++|+|.+.|. |   ..+ +|..++..    ..+....|.+..++..|+|.|+|.+.|..+.... ..+.
T Consensus        10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~----IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~Vt   85 (304)
T 3shs_A           10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQP----HENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVF   85 (304)
T ss_dssp             SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEE----CSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCE
T ss_pred             CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCcc----ccCCcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEE
Confidence            33458889999999999765 4   233 66654422    2223457899999999999999999998774322 1122


Q ss_pred             CCC--CCeEE-ecCCceeecCCCcEEEEEEE--ee-ec-----CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        130 PAK--PPVFT-KKIQPCRAFEQDQARFEVEF--DG-DP-----LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       130 ~~~--~p~~~-~~~~~~~~~~g~~v~l~C~~--~g-~p-----~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      +..  .+.+. ..+....+..+..+.|.+.+  +| .|     ..+++|+|++..+....           .+.+.....
T Consensus        86 VT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq-----------~lT~sS~Ta  154 (304)
T 3shs_A           86 LMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTA  154 (304)
T ss_dssp             EECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-----------EEEECSCCG
T ss_pred             EeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-----------ccceeeEEe
Confidence            111  22222 23444556677889999888  54 33     46999999998775322           367778888


Q ss_pred             CCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE
Q psy14060        199 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS  261 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~  261 (283)
                      .++|.|+|.+.|..+....+....+....        .+.-........+..|+.+.|...+.
T Consensus       155 teaG~YtV~VTn~~~~c~~s~~~~i~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~  209 (304)
T 3shs_A          155 DKNGVYTVKVWGESEDSAASASTKIMLAT--------MNVDQDVVESKTVALGNEISLNYVVS  209 (304)
T ss_dssp             GGCEEEEEEEESSSGGGCEEEEEEEEECE--------EEEEECCCSEEEEETTSCEEECCEEE
T ss_pred             cCCeEEEEEEEcCCCCcccccceEEEEEc--------cccchhheEeehhhcCcEEEEEEEEe
Confidence            99999999999987743333333332211        01111122356788999999987764

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.43  E-value=1.4e-12  Score=98.70  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=94.6

Q ss_pred             eeecCcEEEEEEEccCc-cceEEeecCCCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCe-
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIVRKITATETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPV-  135 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~-  135 (283)
                      |.+|+++.|.|.+.... +...+.....+... ........|.|.+++. | |.|.|.+..... ......+.+..+|. 
T Consensus        11 V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~   88 (185)
T 1iam_A           11 LPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPER   88 (185)
T ss_dssp             EETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSE
T ss_pred             EeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCC
Confidence            77889999999997433 43233222222222 2223567789999973 4 999999865532 33444455544444 


Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-cCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-PLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ....+....+.+|+.++|.|.+.|. |..  .|+|||++..+.....   .......+|.+.....+|.+.|+|.|.|..
T Consensus        89 v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~---~~~~~~~tl~~~~~reD~g~~~sC~A~~~l  165 (185)
T 1iam_A           89 VELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDL  165 (185)
T ss_dssp             EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred             CEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC---CCccccEEEEEeceeccCCCeEEEEEEecC
Confidence            3444555568999999999999884 543  5899999988753210   000112346666555555559999999876


Q ss_pred             c
Q psy14060        213 G  213 (283)
Q Consensus       213 g  213 (283)
                      +
T Consensus       166 ~  166 (185)
T 1iam_A          166 R  166 (185)
T ss_dssp             G
T ss_pred             c
Confidence            6

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=9.1e-13  Score=90.43  Aligned_cols=90  Identities=20%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.|...+....+..|+.+.|.|.+ +.|.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|.    
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----
Confidence            36777777788899999999999994 7788999999999999887788888777788999999999999999998    


Q ss_pred             CceeEEEEEEEEEec
Q psy14060        212 GGKAKCSANLVVEEK  226 (283)
Q Consensus       212 ~g~~~~~~~l~v~~~  226 (283)
                      .|.....+.|.|...
T Consensus        82 ~g~~~~~~~l~V~~~   96 (103)
T 2dku_A           82 IGQAQSRAQLLVQGR   96 (103)
T ss_dssp             CSSCBCCEEEEEECS
T ss_pred             eCCceEEEEEEEeCc
Confidence            566666788888763

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.41  E-value=2e-12  Score=89.34  Aligned_cols=93  Identities=12%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE-ec-------CCCCCeEEEEe-CCEEEEEEcCCCCCCCE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-PI-------TSSPDFQIHTF-STKSILIMRQVFMEDSG  202 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~-~~-------~~~~~~~~~~~-~~~~~l~i~~~~~~d~G  202 (283)
                      .+|.+...+....+..|+++.|.|.+.+.|.+.+.|++++. .+       ....++.+... ....+|.|.++..+|+|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            45667777888999999999999999998989999999765 22       12235554433 24678999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEEe
Q psy14060        203 VFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .|+|.+.| .+.....+.|.|..
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~  106 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLG  106 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEEC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEc
Confidence            99999999 88888888888874

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.40  E-value=7.8e-13  Score=107.69  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             CCceeecCCCcEEEEEEEeee--cCCEEEEEeCCE--ecC-----------------CCCCeEEEE--eCCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFREDF--PIT-----------------SSPDFQIHT--FSTKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~~~  196 (283)
                      +....+.+|++++|.|.+.+.  +.+.+.|||...  ...                 ...++.+..  .....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            566789999999999999875  557899998421  100                 012444442  234568999999


Q ss_pred             CCCCCEEEEEEEEeC---------CceeEEEEEEEEEe-ccC----CCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAENR---------GGKAKCSANLVVEE-KRQ----GGRGGVVPPSFLTTISSAVINVGQLARFDAKISA  262 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~---------~g~~~~~~~l~v~~-~~~----~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g  262 (283)
                      ..+|+|.|+|.+.|.         .........|.|.. ...    .......++.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999886         11122234555543 000    0000002445555555 78999999999999988


Q ss_pred             -eC-CCeeEEee
Q psy14060        263 -TK-PLDVYWLK  272 (283)
Q Consensus       263 -~p-~~~v~W~~  272 (283)
                       .+ .+.+.|++
T Consensus       166 ~~~~~~~v~W~r  177 (280)
T 3fku_X          166 NNVGNQGAAWLQ  177 (280)
T ss_dssp             CCCCTTCCEEEE
T ss_pred             CCCCCceEEEEE
Confidence             44 36899998

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=7.1e-13  Score=90.33  Aligned_cols=81  Identities=16%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      +....+..|+.+.|.|.+.+.| |.+.|+|++..+....++.+.    ...|.|.++..+|+|.|+|.+.|..|.....+
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   84 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYF   84 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence            3446778999999999999866 799999999888766565543    24799999999999999999999999988777


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus        85 ~l~V~~   90 (99)
T 2cr3_A           85 SVNVSD   90 (99)
T ss_dssp             EECBCS
T ss_pred             EEEEec
Confidence            777765

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.40  E-value=3.8e-12  Score=88.34  Aligned_cols=93  Identities=16%  Similarity=0.260  Sum_probs=71.0

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCCEecCCCCCeEEEEeC--------CEEEEEEcCCCCCC
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFREDFPITSSPDFQIHTFS--------TKSILIMRQVFMED  200 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d  200 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.  +.+.+.|+|++..+............        ....|.|.++..+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            457888888888899999999999999865  45899999999987653211111110        13579999999999


Q ss_pred             CEEEEEEEEeCCcee-EEEEEEEE
Q psy14060        201 SGVFAVIAENRGGKA-KCSANLVV  223 (283)
Q Consensus       201 ~G~Y~C~a~n~~g~~-~~~~~l~v  223 (283)
                      +|.|+|.+.|..|.. +..+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999999873 45566654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.40  E-value=3.2e-12  Score=90.47  Aligned_cols=86  Identities=13%  Similarity=-0.007  Sum_probs=65.4

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCCEecC-----CCCCeEEEEe---CCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFREDFPIT-----SSPDFQIHTF---STKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~~~~-----~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      +....+..|+.+.|.|.+.|.|  .+.+.|++++..+.     ..........   .....|.|.++..+|+|.|+|.|.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            3445788999999999999844  47899999887432     1111111111   134579999999999999999999


Q ss_pred             eCCceeEEEEEEEEEe
Q psy14060        210 NRGGKAKCSANLVVEE  225 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~  225 (283)
                      |..|.....+.|.|.+
T Consensus        95 n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEec
Confidence            9999999889999886

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.39  E-value=4.5e-12  Score=101.31  Aligned_cols=133  Identities=15%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             ecCCceeecCCCcEEEEEEEee--ecCCEEEEEeCC--E---ec---C-----------CCCCeEEEEe--CCEEEEEEc
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI---T-----------SSPDFQIHTF--STKSILIMR  194 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~--~---~~---~-----------~~~~~~~~~~--~~~~~l~i~  194 (283)
                      ..+....+.+|++++|.|.+.+  .+...+.|||..  .   .+   .           ...++.+...  ....+|.|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3456678899999999999975  245689999742  1   11   0           1235555443  346689999


Q ss_pred             CCCCCCCEEEEEEEEeCCc----------------------eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC
Q psy14060        195 QVFMEDSGVFAVIAENRGG----------------------KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ  252 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~~g----------------------~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~  252 (283)
                      ++..+|+|.|.|.+.+..+                      .......+.|....      ..+|.+........+..|+
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~------~~~P~v~~~~~~~~~~~g~  157 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS------TKGPSVFPLAPSSKSTSGG  157 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC------CBCCEEEEECCC------C
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC------CCCCEEEEeCCCccccCCC
Confidence            9999999999999987421                      11112455554211      1356665444445566799


Q ss_pred             eEEEEEEEEee-C-CCeeEEeeCCEE
Q psy14060        253 LARFDAKISAT-K-PLDVYWLKVSSL  276 (283)
Q Consensus       253 ~v~L~C~~~g~-p-~~~v~W~~~g~~  276 (283)
                      .++|.|.+.+. | .+.+.|+++|..
T Consensus       158 ~~~L~C~~~~~~P~~~~v~W~~~g~~  183 (248)
T 3u2s_H          158 TAALGCLVKDYFPEPVTVSWNSGALT  183 (248)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cEEEEEEEeeEECCCeEEEEeECCcc
Confidence            99999999984 4 346999999864

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.38  E-value=5.3e-12  Score=100.32  Aligned_cols=133  Identities=13%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             cCCceeecCCCcEEEEEEEeeec----CCEEEEEeCC--E---ec---C----------------CCCCeEEEEe--CCE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP----LPTIKWFRED--F---PI---T----------------SSPDFQIHTF--STK  188 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~~--~---~~---~----------------~~~~~~~~~~--~~~  188 (283)
                      .+....+.+|++++|.|.+.+.+    ...+.|||..  .   .+   .                ...++.+...  ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            34567889999999999998755    3489999842  1   11   0                0123444332  345


Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCc-----------e--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEE
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGG-----------K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLAR  255 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g-----------~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~  255 (283)
                      .+|.|.++..+|+|.|+|.+.+..+           .  ......+.|....      ..+|.+........+..|+.+.
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~  159 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAA  159 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC------CBCCEEEEECCCCCC--TTEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC------CcCCEEEEECCChhhccCCcEE
Confidence            6799999999999999999986531           0  1112345554211      1356666444444556799999


Q ss_pred             EEEEEEee-CCC-eeEEeeCCEEe
Q psy14060        256 FDAKISAT-KPL-DVYWLKVSSLS  277 (283)
Q Consensus       256 L~C~~~g~-p~~-~v~W~~~g~~l  277 (283)
                      |.|.+.+. |.+ .+.|+++|..+
T Consensus       160 l~C~~~~~~p~~~~v~W~~~g~~~  183 (239)
T 3tv3_H          160 LGCLVKDYFPEPVTVSWNSGALTS  183 (239)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEEEEeeEeCCCeEEEEEECCccC
Confidence            99999984 434 48899999643

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.37  E-value=6.7e-12  Score=99.16  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CC--EEEEEeCCE-----ec-----CC-----------CCCeEEEEe--CCEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LP--TIKWFREDF-----PI-----TS-----------SPDFQIHTF--STKSILI  192 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~--~~~W~k~~~-----~~-----~~-----------~~~~~~~~~--~~~~~l~  192 (283)
                      +....+.+|++++|.|.+.+.+  ..  .+.|||...     .+     ..           ..++.+...  ....+|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            3456789999999999997632  23  349997421     11     00           135555443  3566899


Q ss_pred             EcCCCCCCCEEEEEEEEeCC--------ceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeC
Q psy14060        193 MRQVFMEDSGVFAVIAENRG--------GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK  264 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~n~~--------g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p  264 (283)
                      |.++..+|+|.|.|.+.+..        ........+.|....      ..+|.+........+..|+.++|.|.+.+.+
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~  160 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  160 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC------CBCCEEEEECC-------CEEEEEEEEEEEB
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC------CCCCEEEEecccccccCCCcEEEEEEEeeEe
Confidence            99999999999999998763        112222455554211      1356666444444566799999999999865


Q ss_pred             CC--eeEEeeCCEE
Q psy14060        265 PL--DVYWLKVSSL  276 (283)
Q Consensus       265 ~~--~v~W~~~g~~  276 (283)
                      ++  .+.|+++|..
T Consensus       161 P~~~~v~W~~~g~~  174 (232)
T 3qhz_H          161 PEPVTVSWNSGALT  174 (232)
T ss_dssp             SSCCEEEEGGGTBC
T ss_pred             CCCeEEEEEECCEe
Confidence            43  5789999964

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.36  E-value=1.2e-12  Score=103.95  Aligned_cols=153  Identities=10%  Similarity=0.054  Sum_probs=91.7

Q ss_pred             eeecCcEEEEEEEccC---c-cce-EEeecCCCE--------EEEEcC---CEEEEEEccCCCCCCeEEEEEEEeccee-
Q psy14060         60 IHTAKSQQVQKEKKGD---K-EIV-RKITATETT--------EMEHKG---KIQERVVDASELDDDGYYAITERKYYAL-  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~---~-~i~-~~~~~~~~~--------~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-  122 (283)
                      +..|+.++|.|.+.|.   | .++ .|...+...        ....++   ....|.|.....+|.|.|+|.+.+..+. 
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            3358899999999986   3 333 443332211        001111   1246778777777899999999988652 


Q ss_pred             --eeeec--cCCCCCCeEEecCCceeecCCCcEEEEEEEee-ecCC-EEEEEeCCEecCCCCCeEEEEe--CC---EEEE
Q psy14060        123 --SDLSE--QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP-TIKWFREDFPITSSPDFQIHTF--ST---KSIL  191 (283)
Q Consensus       123 --~~~~~--~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~~~W~k~~~~~~~~~~~~~~~~--~~---~~~l  191 (283)
                        .....  +....+|.+...+.......|+.+.|.|.+.+ +|.+ .+.|+|++..+...........  +.   .+.|
T Consensus       116 ~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L  195 (240)
T 4acp_A          116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKL  195 (240)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred             cccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEE
Confidence              11121  23445777665544443345889999999998 4554 8999999988643111101111  11   2346


Q ss_pred             EEcCCCCCCCEEEEEEEEeCC
Q psy14060        192 IMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+......+.|.|+|.+.|..
T Consensus       196 ~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          196 TVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             EEEHHHHHTTCCEEEEEECTT
T ss_pred             EEChHHhCCCCEEEEEEEECC
Confidence            666555567899999999875

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.36  E-value=7.2e-14  Score=109.23  Aligned_cols=135  Identities=15%  Similarity=0.064  Sum_probs=87.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecC---CEEEEEeCCEecCCCC-CeEE-EEe---CCEEEEEEcCCCCCCCEEEEEE
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSP-DFQI-HTF---STKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~~~~~~~~~-~~~~-~~~---~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      ++..+....+..|+.++|.|.+.+.+.   +.+.| + +..+.... .... ...   .....|.|.++..+|.|.|+|.
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~   84 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCT   84 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEE
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEE
Confidence            344566777889999999999998754   68999 4 33332110 0000 000   0234577778888899999999


Q ss_pred             EEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecC-CceEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecC
Q psy14060        208 AENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDV  279 (283)
Q Consensus       208 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~  279 (283)
                      +.|..+.......+.+...       ..+|.+...+ ....+..|+.+.|.|.+.|. |. +.|.|++||+.+..
T Consensus        85 ~~~~~~~~~~~~~i~~~~~-------~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  152 (214)
T 1ow0_A           85 AAYPESKTPLTATLSKSGN-------TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR  152 (214)
T ss_dssp             ECCSSCSSCEEEEEECCSS-------CCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             EecCCCCCceeEeeccCCC-------CCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCC
Confidence            9998764333333322111       1467664433 33346789999999999996 43 38999999998754

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.36  E-value=2e-13  Score=106.74  Aligned_cols=153  Identities=9%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             eeecCcEEEEEEEccCcc---ce-EEeecCCCEE------E-EEcC---CEEEEEEccCCCCCCeEEEEEEEecceee--
Q psy14060         60 IHTAKSQQVQKEKKGDKE---IV-RKITATETTE------M-EHKG---KIQERVVDASELDDDGYYAITERKYYALS--  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~---i~-~~~~~~~~~~------~-~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--  123 (283)
                      +.+|+.++|.|.+.|.+.   +. .| .......      . ...+   ....|.|.+++.+|+|.|+|.+.|..+..  
T Consensus        16 v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~   94 (214)
T 1ow0_A           16 LLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPL   94 (214)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSCSSCE
T ss_pred             hccCCCcEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecCCCCCce
Confidence            567889999999998742   22 33 2111000      0 0011   34578899999999999999999876521  


Q ss_pred             -eeec-cCCCCCCeEEecC-CceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeE--EEEe----CC----E
Q psy14060        124 -DLSE-QKPAKPPVFTKKI-QPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQ--IHTF----ST----K  188 (283)
Q Consensus       124 -~~~~-~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~--~~~~----~~----~  188 (283)
                       .... +.+..+|.+.... ....+..|+.+.|.|.+.|. |. +.+.|+|++..+.......  ....    +.    .
T Consensus        95 ~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~  174 (214)
T 1ow0_A           95 TATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVT  174 (214)
T ss_dssp             EEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEE
T ss_pred             eEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEE
Confidence             1111 2445677664433 33346678899999999985 54 5999999998876532111  1111    11    1


Q ss_pred             EEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        189 SILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       189 ~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +.|.+......+.|.|+|.+.|...
T Consensus       175 s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          175 SILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             EEEEECHHHccCCCEEEEEEECCCC
Confidence            2344444433458999999999763

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.35  E-value=6.6e-12  Score=90.82  Aligned_cols=86  Identities=19%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC----------CCeEEEE---eCCEEEEEEcCC
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----------PDFQIHT---FSTKSILIMRQV  196 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~----------~~~~~~~---~~~~~~l~i~~~  196 (283)
                      ...+|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...          .++.+..   ......|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            356899999999999999999999999999999999999987655321          1233321   112457999999


Q ss_pred             CCCCCEEEEEEEEeCCcee
Q psy14060        197 FMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ..+|+|.|+|.|.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999998875

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.35  E-value=6.4e-12  Score=89.30  Aligned_cols=86  Identities=9%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+..+.+.+|++++|.|.+.+.|.+.+.|++.+..+        ....++.+. ......+|.|.++..+|+|.|+|.+.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            345678899999999999999999999999865532        133444443 23456789999999999999999999


Q ss_pred             eCCceeEEEEEEEEEe
Q psy14060        210 NRGGKAKCSANLVVEE  225 (283)
Q Consensus       210 n~~g~~~~~~~l~v~~  225 (283)
                      |. +.....+.|.|..
T Consensus        87 n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           87 SD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             SS-SEEEEEEEEEEEC
T ss_pred             cC-CCCcEEEEEEEEe
Confidence            99 8888888998885

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.35  E-value=4.9e-12  Score=85.37  Aligned_cols=81  Identities=11%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      .+....+..|+.+.|.|.+.+  .|.+.|+|++..+....++.+.  .  ..|.|.++..+|+|.|+|.+.|..|.....
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   80 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI--G--EYLQIKGATPRDSGLYACTAARTVDSETWI   80 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE--T--TEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe--C--CEEEECcCCcccCEEEEEEEccCCCcEEEE
Confidence            445677899999999999986  5899999999998776665543  2  369999999999999999999999988888


Q ss_pred             EEEEEEe
Q psy14060        219 ANLVVEE  225 (283)
Q Consensus       219 ~~l~v~~  225 (283)
                      +.|.|.+
T Consensus        81 ~~l~V~~   87 (95)
T 4hwu_A           81 FMVNVTD   87 (95)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8888875

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.34  E-value=5.3e-12  Score=85.68  Aligned_cols=81  Identities=20%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             cCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      .+....+..|+.+.|.|.+. +.|.+.+.|+|++.......  .....   ..|.|.++..+|+|.|+|.+.|..|....
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFN---GILTIRNVQPSDAGTYVCTGSNMFAMDQG   90 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEET---TEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eecCC---CEEEEeCCChhhCEEEEEEecCCCCcccc
Confidence            34566899999999999998 57899999999854433321  12221   26999999999999999999999999888


Q ss_pred             EEEEEEE
Q psy14060        218 SANLVVE  224 (283)
Q Consensus       218 ~~~l~v~  224 (283)
                      .+.|.|.
T Consensus        91 ~~~l~V~   97 (98)
T 1gl4_B           91 TATLHVQ   97 (98)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            8877764

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.33  E-value=2.1e-11  Score=108.80  Aligned_cols=92  Identities=22%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ..|.+...+....+..|+++.|.|.+.|.|.|.++|+|++..+..+.++.+...+..++|.|.++...|+|.|+|.|.|.
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            35777888888899999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .|..+..+.|.|
T Consensus       561 ~G~~~~~v~l~V  572 (573)
T 3uto_A          561 YGTKEEIVFLNV  572 (573)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999999988877

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.32  E-value=2.1e-11  Score=94.69  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ecC-------CCCCeEEEEe---CCEEEEEEcCCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PIT-------SSPDFQIHTF---STKSILIMRQVFMEDS  201 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~~-------~~~~~~~~~~---~~~~~l~i~~~~~~d~  201 (283)
                      ...+..+.+..|+++.|.|.+.+.+ +.+.|||..  .   .+.       ...++.+...   ....+|.|.++..+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            4456667899999999999998643 589999853  1   110       1245555544   4557899999999999


Q ss_pred             EEEEEEEEeCCc---------e--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-Cee
Q psy14060        202 GVFAVIAENRGG---------K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDV  268 (283)
Q Consensus       202 G~Y~C~a~n~~g---------~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v  268 (283)
                      |.|+|.+.+..+         .  ......|.|.....    ...+|.+...       .+ .+.|.|.+.+. |. +.+
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~----~~~~P~v~~~-------~~-~~~l~C~~~g~~P~~~~v  151 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ----PPAKPSVFIM-------KN-GTNVACLVKDFYPKEVTI  151 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC----CCCCCEEEEE-------EE-TTEEEEEEEEESSSCCEE
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCCC----CCCCCeEEEe-------CC-CCeEEEEEeeEeCCCeEE
Confidence            999999988642         1  11235677764210    0023433321       11 26899999986 43 689


Q ss_pred             EEeeCCEEec
Q psy14060        269 YWLKVSSLSD  278 (283)
Q Consensus       269 ~W~~~g~~l~  278 (283)
                      .|+++ +.+.
T Consensus       152 ~W~~~-~~l~  160 (207)
T 1ypz_E          152 SLRSS-KKIV  160 (207)
T ss_dssp             EEECS-SEEE
T ss_pred             EEecC-Cccc
Confidence            99999 6654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=88.85  Aligned_cols=82  Identities=16%  Similarity=0.355  Sum_probs=66.5

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+....         ...|.|.++..+|+|.|+|.+.|
T Consensus         8 ~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A            8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             CCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECC
T ss_pred             CCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEe
Confidence            346677777778889999999999999999999999999998876532         23699999999999999999999


Q ss_pred             CCceeEEEEEE
Q psy14060        211 RGGKAKCSANL  221 (283)
Q Consensus       211 ~~g~~~~~~~l  221 (283)
                      ..+....+..+
T Consensus        79 ~~~~~~~s~~~   89 (96)
T 2ens_A           79 SSHGPQESRAV   89 (96)
T ss_dssp             SSCCCEECCCE
T ss_pred             CCCCcEEEEEE
Confidence            76554444333

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.5e-12  Score=85.62  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=67.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ....+..|+.+.|.|.+. .|.+.+.|+|++..+....++.+...+....|.|.++..+|+|.|+|.+.|    ....+.
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~~   93 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFR   93 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT----EECCEE
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----CcEEEE
Confidence            345788999999999998 788999999999999877788888777778999999999999999999843    345577


Q ss_pred             EEEEe
Q psy14060        221 LVVEE  225 (283)
Q Consensus       221 l~v~~  225 (283)
                      |.|..
T Consensus        94 l~V~~   98 (102)
T 2eo1_A           94 LQVAG   98 (102)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            77764

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=90.09  Aligned_cols=89  Identities=9%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEE---------eCCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEE
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF---------REDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~---------k~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      .+...+....+..|+++.|.|.+.+.|.+.+.|+         +++..+. ..++.+.. .....+|.|.++..+|+|.|
T Consensus        40 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y  118 (145)
T 1z9m_A           40 DSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR-DNRIQLVTSTPHELSISISNVALADEGEY  118 (145)
T ss_dssp             TTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC-CTTEEEEEECSSEEEEEECSCCGGGCEEE
T ss_pred             ceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc-cCCEEEecCCCCeEEEEECCCChhhCEEE
Confidence            3345567788999999999999999888999999         4443333 34555432 33456899999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEe
Q psy14060        205 AVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      +|.+.|. +.....+.|.|..
T Consensus       119 ~C~~~n~-~~~~~~~~L~V~~  138 (145)
T 1z9m_A          119 TCSIFTM-PVRTAKSLVTVLG  138 (145)
T ss_dssp             EEEECSS-SCEEEEEEEEEEC
T ss_pred             EEEEEcC-CCceEEEEEEEEe
Confidence            9999999 8888888888885

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.28  E-value=6.7e-11  Score=95.54  Aligned_cols=160  Identities=11%  Similarity=0.136  Sum_probs=95.3

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++++|.|...+..    .+.          ..+              ....|+.+..+  .+..+|.|.+++.+|+
T Consensus        35 ~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds  114 (267)
T 3u1s_H           35 KKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDT  114 (267)
T ss_dssp             ECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGC
T ss_pred             EeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhC
Confidence            66788999999996521    111          111              11245665433  3567899999999999


Q ss_pred             eEEEEEEEe---------------------c-------ceeeeeecc--CCCCCCeEEecCCceeecCCCcEEEEEEEee
Q psy14060        110 GYYAITERK---------------------Y-------YALSDLSEQ--KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG  159 (283)
Q Consensus       110 G~Y~C~a~n---------------------~-------~~~~~~~~~--~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g  159 (283)
                      |.|.|.+.+                     .       .+......+  ....+|.+...........|+.++|.|.+.+
T Consensus       115 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~  194 (267)
T 3u1s_H          115 AIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  194 (267)
T ss_dssp             EEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEE
T ss_pred             EEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeE
Confidence            999998851                     1       111111112  2334555553333333457899999999987


Q ss_pred             e-c-CCEEEEEeCCEecCCCCC-e-EEEEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060        160 D-P-LPTIKWFREDFPITSSPD-F-QIHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       160 ~-p-~~~~~W~k~~~~~~~~~~-~-~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      . | .+.+.|  ++..+..... . .....+    ..+.|.|......| +.|+|.+.|..........+.
T Consensus       195 ~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  262 (267)
T 3u1s_H          195 YFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  262 (267)
T ss_dssp             EBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcc
Confidence            4 5 468999  4443322100 0 000001    12358888888788 999999999876655444443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.27  E-value=9.5e-12  Score=85.94  Aligned_cols=64  Identities=16%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|.  +.     ..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        24 ~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   94 (107)
T 3knb_B           24 RVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGE   94 (107)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCE
Confidence            4777889999999999983  33     4556677888877788899999999999999999999999984

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.27  E-value=1.6e-10  Score=87.32  Aligned_cols=123  Identities=9%  Similarity=-0.036  Sum_probs=87.0

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCE-EEEEeC-CEecC-CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFRE-DFPIT-SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~-~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ..+....+..|+++.|.|.+.. +.|. +.|.-. ++... ..       ......|.|.+++. | |.|.|.+......
T Consensus         4 v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~-------~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~   73 (185)
T 1iam_A            4 VSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLP-------GNNRKVYELSNVQE-D-SQPMCYSNCPDGQ   73 (185)
T ss_dssp             EESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSS-------SSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred             EECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEecc-------CCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence            3456677999999999999975 5554 677431 11111 11       11234588888873 4 9999999766556


Q ss_pred             eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC--eeEEeeCCEEecC
Q psy14060        215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       215 ~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~--~v~W~~~g~~l~~  279 (283)
                      ....+.|.|..         .|..+...+....+.+|+.++|.|.+.|. |..  +|+||++++.+..
T Consensus        74 ~~~~~~l~V~~---------~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~  132 (185)
T 1iam_A           74 STAKTFLTVYW---------TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR  132 (185)
T ss_dssp             EEEECEEEEEB---------CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             eEEEEEEEEeC---------CCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccc
Confidence            67778888886         24555556666679999999999999984 443  4899999999864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.26  E-value=9.1e-11  Score=92.51  Aligned_cols=130  Identities=12%  Similarity=0.115  Sum_probs=85.4

Q ss_pred             CCceeecCCCcEEEEEEEee--ecCCEEEEEeCC--E---ec---C-----------CCCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI---T-----------SSPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~--~---~~---~-----------~~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      +....+.+|++++|.|.+.+  .+...+.|||..  .   .+   .           ...++.+....  ...+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            34577899999999999975  244679999742  1   11   0           02355554433  4567999999


Q ss_pred             CCCCCEEEEEEEEeCC-----cee---EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCC--C
Q psy14060        197 FMEDSGVFAVIAENRG-----GKA---KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP--L  266 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~-----g~~---~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~  266 (283)
                      ..+|+|.|+|.+.+..     +..   .....|.|....      ..+|.+........+..|+.++|.|.+.+.++  +
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~  160 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC------CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCC
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC------CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCE
Confidence            9999999999998754     111   122456664211      13566654444445578999999999998543  3


Q ss_pred             eeEEeeCCEEe
Q psy14060        267 DVYWLKVSSLS  277 (283)
Q Consensus       267 ~v~W~~~g~~l  277 (283)
                      .+.|  +|..+
T Consensus       161 ~v~W--~~~~~  169 (230)
T 3n9g_H          161 TVSW--NSGAL  169 (230)
T ss_dssp             EEEE--GGGTB
T ss_pred             EEEE--CCccc
Confidence            6999  65444

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.23  E-value=1.4e-10  Score=89.79  Aligned_cols=152  Identities=16%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+..|++++|.|.+.|..    .+.          .++   ..           ..|+.+.  ...+...|.+++++.+|
T Consensus        11 lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~eD   90 (254)
T 4f9p_D           11 VVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTSDD   90 (254)
T ss_dssp             EECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCCCC
Confidence            467788999999999865    122          122   11           2355554  34578999999999999


Q ss_pred             CeEEEEEEEecc---eeeeeeccC-------------------CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEE
Q psy14060        109 DGYYAITERKYY---ALSDLSEQK-------------------PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK  166 (283)
Q Consensus       109 ~G~Y~C~a~n~~---~~~~~~~~~-------------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~  166 (283)
                      +..|.|...+..   |-.....+.                   ......++..+..+.+.+|+.++|.|..+..-...+.
T Consensus        91 TAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~~l~  170 (254)
T 4f9p_D           91 SAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISNNLH  170 (254)
T ss_dssp             CEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTTCCE
T ss_pred             CEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccCCcE
Confidence            999999643221   100000000                   0011234555677789999999999998764445688


Q ss_pred             EEeC--CEe---c-------CC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        167 WFRE--DFP---I-------TS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       167 W~k~--~~~---~-------~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ||+.  |+.   +       ..  ..+|.....+...+|.|.++..+|.+.|+|...+
T Consensus       171 WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~  228 (254)
T 4f9p_D          171 WYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSN  228 (254)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECS
T ss_pred             EEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecC
Confidence            9864  221   1       01  1356666566677899999999999999997544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.22  E-value=2.4e-10  Score=89.82  Aligned_cols=126  Identities=14%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             EecCCceeecCCCcEEEEEEEee-ec---CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDG-DP---LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g-~p---~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...|....+..|+.++|.|.+.+ .|   ...++|+|++..+...          ...|.+..+...|+|.|+|.+.+..
T Consensus         6 s~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa----------T~tLti~s~t~sdSG~YqCvVTDa~   75 (304)
T 3shs_A            6 SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN----------TATLTVADATSENAGSYKVTVQDTD   75 (304)
T ss_dssp             EEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC----------cceEEeeeccccCCeEEEEEEEECC
Confidence            34456667889999999999865 45   3479999999887642          2258899999999999999999988


Q ss_pred             ceeEEEEEEEEEeccCCCCCCCCCCeEEe-cCCceEEcCCCeEEEEEEE--Ee-eC-----CCeeEEeeCCEEecCC
Q psy14060        213 GKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKI--SA-TK-----PLDVYWLKVSSLSDVK  280 (283)
Q Consensus       213 g~~~~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~--~g-~p-----~~~v~W~~~g~~l~~~  280 (283)
                      |....+..+.|...        ..+.+.. .+....+..|..+.|.+.+  .| .|     ..+|+|++||..+...
T Consensus        76 Gcs~tSs~VtVT~~--------a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA  144 (304)
T 3shs_A           76 TMTSVESEVFLMEE--------AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT  144 (304)
T ss_dssp             TCCEEECCCEEECB--------CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS
T ss_pred             CCeeeeeeEEEecc--------CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc
Confidence            87665555555542        1222222 2444556778899999988  43 34     4589999999887644

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.22  E-value=1.3e-10  Score=91.56  Aligned_cols=146  Identities=13%  Similarity=0.045  Sum_probs=85.2

Q ss_pred             eeeecCcEEEEEEEccCc----cce--E--------Eee---------cCCCEEEEE--cCCEEEEEEccCCCCCCeEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV--R--------KIT---------ATETTEMEH--KGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~--~--------~~~---------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      .+.+|++++|.|.+.|.+    .+.  +        .+.         ...|+.+..  .++...|.|.+++.+|+|.|.
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~   91 (229)
T 1hxm_A           12 PVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYY   91 (229)
T ss_dssp             EEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEE
T ss_pred             EEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEE
Confidence            366788999999998643    222  1        110         134666553  356789999999999999999


Q ss_pred             EEEEecc------e---eeeeeccCC------CCCCeEEecCCceeecCCCcEEEEEEEeee-cCC-EEEEEeCCEecCC
Q psy14060        114 ITERKYY------A---LSDLSEQKP------AKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP-TIKWFREDFPITS  176 (283)
Q Consensus       114 C~a~n~~------~---~~~~~~~~~------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~  176 (283)
                      |.+.+..      .   ......+.+      ..+|.+...       . ..+.|.|.+.+. |.+ .+.|+++ ..+..
T Consensus        92 C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~  162 (229)
T 1hxm_A           92 CACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRINLVSS-KKITE  162 (229)
T ss_dssp             EEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEEEECS-SEEEE
T ss_pred             EEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEEEecC-CEEec
Confidence            9887652      1   111111211      123333221       1 124899999875 554 8999999 66543


Q ss_pred             CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        177 SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       177 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .........+....+. ......+.|.|+|.+.|..+.
T Consensus       163 ~~~~~~~~~dg~y~~~-~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          163 FDPAIVISPSGKYNAV-KLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             CCCEEEECTTSSEEEE-EEEEETTTTTCEEEEEETTEE
T ss_pred             CccceEECCCCcEEEE-ECcccCCCCcEEEEEEeCCCC
Confidence            2221111111222222 112236789999999998643

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.20  E-value=1.3e-10  Score=91.38  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=80.7

Q ss_pred             CCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--E---ec----C----------CCCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI----T----------SSPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~---~~----~----------~~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      +....+.+|++++|.|.+.+.  +...+.|||..  .   .+    .          ...++.+....  ...+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            345788999999999999763  35689999842  1   11    0          01345444332  4567999999


Q ss_pred             CCCCCEEEEEEEEeCCc------eeE---EEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-C-C
Q psy14060        197 FMEDSGVFAVIAENRGG------KAK---CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-K-P  265 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g------~~~---~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~  265 (283)
                      ..+|+|.|+|.+.+..+      ...   ....|.|....      ..+|.+...+....+..|+.+.|.|.+.+. | .
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~------~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~  160 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  160 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC------CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSC
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC------CCCCcEEEecCcccccCCCCEEEEEEEEEEECCC
Confidence            99999999999976431      011   11345554211      135555543333445689999999999885 4 3


Q ss_pred             CeeEE
Q psy14060        266 LDVYW  270 (283)
Q Consensus       266 ~~v~W  270 (283)
                      +.+.|
T Consensus       161 ~~v~W  165 (226)
T 3mlr_H          161 VTVSW  165 (226)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            47999

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=89.05  Aligned_cols=154  Identities=10%  Similarity=-0.057  Sum_probs=93.7

Q ss_pred             eeeecCcEEEEEEEccCc-cceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc-eeeeeeccCCCCCCeE
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY-ALSDLSEQKPAKPPVF  136 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-~~~~~~~~~~~~~p~~  136 (283)
                      .|.+|+++.|.|.+.... +...+...-.+...........+.|.+++ +|.+.|.|.+.... .......+.+..+|..
T Consensus        13 ~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~   91 (196)
T 3bn3_B           13 FVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDR   91 (196)
T ss_dssp             EEETTEEEEEEEEECCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCC
T ss_pred             EEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCc
Confidence            377789999999996433 23222222222333333356668999998 88888999976642 2344444544444433


Q ss_pred             -EecCCceeecCCCcEEEEEEEeee-cCC--EEEEEeCCEecCCCCCe-EE-EEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        137 -TKKIQPCRAFEQDQARFEVEFDGD-PLP--TIKWFREDFPITSSPDF-QI-HTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       137 -~~~~~~~~~~~g~~v~l~C~~~g~-p~~--~~~W~k~~~~~~~~~~~-~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                       ...+.+..+.+|+.++|.|.+.+. |..  .+.|||++..+...... .. ........+.+.....++...|+|.|.+
T Consensus        92 v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l  171 (196)
T 3bn3_B           92 VELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL  171 (196)
T ss_dssp             CEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEE
T ss_pred             CEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEc
Confidence             233333447899999999999874 543  48999999877421100 00 0000124466665555555599999998


Q ss_pred             CCc
Q psy14060        211 RGG  213 (283)
Q Consensus       211 ~~g  213 (283)
                      ..+
T Consensus       172 ~l~  174 (196)
T 3bn3_B          172 DLR  174 (196)
T ss_dssp             ECG
T ss_pred             cCC
Confidence            765

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.18  E-value=1e-10  Score=84.06  Aligned_cols=89  Identities=12%  Similarity=0.241  Sum_probs=66.9

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec-CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+...+....+..|++++|.|.+.+.  +.+.|||+.  .   .+ ....++.+...+....|.|.++..+|+|.|+|.+
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a   96 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQ   96 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEE
Confidence            45666777889999999999999885  889999972  2   11 2345777776777788999999999999999999


Q ss_pred             EeCCce----eEEEEEEEEEe
Q psy14060        209 ENRGGK----AKCSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~----~~~~~~l~v~~  225 (283)
                      .|..|.    ......|.|..
T Consensus        97 ~n~~g~~~~~~g~gt~L~V~~  117 (133)
T 3khq_A           97 KCDSANHNVTDSCGTELLVLG  117 (133)
T ss_dssp             SSCC-------CCCEEEEEC-
T ss_pred             EeCCCCcceeECCCEEEEEEe
Confidence            988752    12335666654

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.18  E-value=2.8e-10  Score=91.26  Aligned_cols=129  Identities=17%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             CceeecCCCcEEEEEEEeee--cCCEEEEEeCC--E---ec--------------CCCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI--------------TSSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~---~~--------------~~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.+.+.  ....+.|||..  .   .+              ....++.+...  ....+|.|.++.
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            44678999999999999753  34679999742  1   11              01134555433  245679999999


Q ss_pred             CCCCEEEEEEEEeCCc---------e--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-C-
Q psy14060        198 MEDSGVFAVIAENRGG---------K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-K-  264 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g---------~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-  264 (283)
                      .+|+|.|+|.+.+..+         .  ......+.|....      ..+|.+........+.+|+.++|.|.+.+. | 
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~  184 (256)
T 3sob_H          111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  184 (256)
T ss_dssp             GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC------CBCCEEEEECCC-----TTEEEEEEEEEEEBSS
T ss_pred             cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC------CCCCEEEEECCCcccccCCcEEEEEEEEEEECC
Confidence            9999999999987431         1  1122355554211      135666544444456789999999999884 4 


Q ss_pred             CCeeEEeeCCEEe
Q psy14060        265 PLDVYWLKVSSLS  277 (283)
Q Consensus       265 ~~~v~W~~~g~~l  277 (283)
                      .+.+.|  +|..+
T Consensus       185 ~~~v~W--~~~~~  195 (256)
T 3sob_H          185 PVTVSW--NSGAL  195 (256)
T ss_dssp             CCEEEE--GGGTB
T ss_pred             CeEEEE--CCccc
Confidence            236999  55433

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.15  E-value=8.4e-10  Score=86.95  Aligned_cols=129  Identities=15%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             EecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E---ecC---------CCCCeEEEEe--CCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PIT---------SSPDFQIHTF--STKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~---~~~---------~~~~~~~~~~--~~~~~l~i~~~~~  198 (283)
                      ...+..+.+..|++++|.|.+.+.+  ...+.|||..  .   .+.         ...++.+...  .....|.|.++..
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   84 (229)
T 1hxm_A            5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (229)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             EeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCH
Confidence            4456677899999999999998643  4689999852  1   110         1245655543  4567899999999


Q ss_pred             CCCEEEEEEEEeCC------ce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-ee
Q psy14060        199 EDSGVFAVIAENRG------GK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DV  268 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~------g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v  268 (283)
                      +|+|.|+|.+.+..      +.  ......|.|.....    ...+|.+....        ..+.|.|.+.|. |.+ .+
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~----~~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~v  152 (229)
T 1hxm_A           85 RDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQ----PHTKPSVFVMK--------NGTNVACLVKEFYPKDIRI  152 (229)
T ss_dssp             GGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSC----CCBCCEEEEEE--------ETTEEEEEEESCBSSCCEE
T ss_pred             hHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCC----CCcCCcEEEcC--------CCCeEEEEEEEEeCCCEEE
Confidence            99999999998763      11  11224666663100    00244443211        124899999975 544 89


Q ss_pred             EEeeCCEEec
Q psy14060        269 YWLKVSSLSD  278 (283)
Q Consensus       269 ~W~~~g~~l~  278 (283)
                      .|++| +.+.
T Consensus       153 ~W~~~-~~~~  161 (229)
T 1hxm_A          153 NLVSS-KKIT  161 (229)
T ss_dssp             EEECS-SEEE
T ss_pred             EEecC-CEEe
Confidence            99999 6654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.15  E-value=3.6e-10  Score=75.77  Aligned_cols=65  Identities=12%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.+.+ .+.     ..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..+..
T Consensus        16 ~v~~G~~v~l~C~v~~~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~~sa   86 (93)
T 1waa_A           16 EVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA   86 (93)
T ss_dssp             EEETTSCEEEEEEESSSSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCcEEE
Confidence            577888999999998765 443     45566778888888888999999999999999999998865443

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.14  E-value=1.8e-09  Score=90.87  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--------------CCEEEEEeC--CE--e--c-CCC----------CCeEEEE---
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--------------LPTIKWFRE--DF--P--I-TSS----------PDFQIHT---  184 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--------------~~~~~W~k~--~~--~--~-~~~----------~~~~~~~---  184 (283)
                      ....+.+..|++++|.|..+..+              ...+.||+.  +.  .  + ..+          ....+..   
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            34567889999999999986533              246899874  31  1  1 111          0111211   


Q ss_pred             ------eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceE-EcCCC-eEEE
Q psy14060        185 ------FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-INVGQ-LARF  256 (283)
Q Consensus       185 ------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~-v~~g~-~v~L  256 (283)
                            .....+|.|.++..+|.|.|+|.+.+..+.......|.|..          +|.+...+.... +..|+ .++|
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~----------pP~V~v~p~~~~~~~~G~~~vtL  313 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK----------PPKVSLMPATLARAAPGEAPPEL  313 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB----------CCEEEEESSSCCCCCTTCCCCCE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc----------CCeEeeccCcceeecCCCccEEE
Confidence                  11346899999999999999999999888777777888874          677766554443 45776 7999


Q ss_pred             EEEEEee-CC--CeeEEe-eCC
Q psy14060        257 DAKISAT-KP--LDVYWL-KVS  274 (283)
Q Consensus       257 ~C~~~g~-p~--~~v~W~-~~g  274 (283)
                      .|.+.|. |.  +.++|+ +||
T Consensus       314 ~C~a~GfyP~~~~~VtW~~rdg  335 (401)
T 3f8u_B          314 LCLVSHFYPSGGLEVEWELRGG  335 (401)
T ss_dssp             EEEEEEEBSSTTCEEEEEEESS
T ss_pred             EEEecCCcCCCCcEEEEEecCC
Confidence            9999985 55  689995 876

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.11  E-value=2.2e-09  Score=81.72  Aligned_cols=128  Identities=5%  Similarity=-0.117  Sum_probs=87.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +...+....+..|+++.|.|.+.. +.+ .+.|.-.-.      ............+.|.++. +|.+.|.|.+......
T Consensus         5 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~------~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~   76 (196)
T 3bn3_B            5 ADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLR------RNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRT   76 (196)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSE------EEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEE
T ss_pred             EEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccC------CeeEccccCceEEEEEEEc-cCCCceEEEEECCCCc
Confidence            344566678999999999999975 555 677743211      0111112233457888888 7878799998776666


Q ss_pred             eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CCC--eeEEeeCCEEecCC
Q psy14060        215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL--DVYWLKVSSLSDVK  280 (283)
Q Consensus       215 ~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~--~v~W~~~g~~l~~~  280 (283)
                      ....+.|.|...         |-.+...+....+.+|+.++|.|.+.+. |..  +|.|+++++.|..+
T Consensus        77 ~~~~v~l~Vy~~---------P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~  136 (196)
T 3bn3_B           77 LQARGLIRTFQR---------PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRR  136 (196)
T ss_dssp             EEEECEEEEEBC---------CCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEecC---------CCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecc
Confidence            777788888863         3333333333347899999999999874 443  38999999998643

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.11  E-value=4.3e-10  Score=77.64  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE-----ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-----PI---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...+....+.+|++++|.|.+.+.|.+.+.|||+..     .+         ....++.+........|.|.++..+|+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            3455667889999999999999988888999998531     11         012456555555667899999999999


Q ss_pred             EEEEEEEEeCC
Q psy14060        202 GVFAVIAENRG  212 (283)
Q Consensus       202 G~Y~C~a~n~~  212 (283)
                      |.|+|.+.|..
T Consensus        84 G~Y~C~~~n~~   94 (108)
T 1jhl_L           84 AMYICQQHNEY   94 (108)
T ss_dssp             SEEEEEECSSS
T ss_pred             EEEEEEEccCC
Confidence            99999998863

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.08  E-value=3.5e-10  Score=76.96  Aligned_cols=65  Identities=17%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeec--CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITA--TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|...       +.+..  ..++.+...+....|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 ~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   89 (100)
T 3knb_A           16 SIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD   89 (100)
T ss_dssp             EEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEE
Confidence            467788999999999998433       33332  346777777788999999999999999999999998853

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=2e-10  Score=100.46  Aligned_cols=82  Identities=28%  Similarity=0.443  Sum_probs=66.2

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC---CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS---PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+...   .++.+..   ..+|.|.++..+|+|.|+|.|.|..|...
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  468 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP---DGTLEVRYAQVQDNGTYLCIAANAGGNDS  468 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECT---TSCEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCC---CCEEEEeeCChHHCEEEEEEEEeCCCcEE
Confidence            45678899999999999999999999999998876532   2222221   23599999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy14060        217 CSANLVVE  224 (283)
Q Consensus       217 ~~~~l~v~  224 (283)
                      ..+.+.|.
T Consensus       469 ~~~~l~V~  476 (477)
T 2id5_A          469 MPAHLHVR  476 (477)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            88888775

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.07  E-value=3.5e-10  Score=74.23  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.|.+ .+.     ..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..+..
T Consensus         7 ~~~~G~~v~l~C~vs~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~a   77 (84)
T 2lu7_A            7 RSTPGGDLELVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDSRIF   77 (84)
T ss_dssp             EECTTSCEEEECCCSCCSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTCEEE
T ss_pred             EEecCCCEEEEEEECCCCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCEEEEE
Confidence            366788999999997733 444     56677788888888888999999999999999999998765543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.06  E-value=1.8e-08  Score=92.77  Aligned_cols=197  Identities=12%  Similarity=0.099  Sum_probs=117.2

Q ss_pred             cceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCcc--ceEEe--ecCCCEEEE---
Q psy14060         19 ILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKE--IVRKI--TATETTEME---   91 (283)
Q Consensus        19 ~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~--i~~~~--~~~~~~~~~---   91 (283)
                      +++.|++.|..|.............  ....|.|.......+.+|+.++|.|.+.|.|.  +..++  ..+......   
T Consensus       137 l~~~~va~~~~G~~~~~~v~~~~~~--~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~  214 (731)
T 2v5y_A          137 VIFEVITSGHQGYLAIDEVKVLGHP--CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK  214 (731)
T ss_dssp             EEEEEEECSSCCEEEECCBEEESSC--CSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEE
T ss_pred             EEEEEEecCCceEEEEeeEEeeecc--cccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceE
Confidence            6777899999998765433222221  12244444333335777889999999999983  33255  233222211   


Q ss_pred             ---EcCCEEEEEEccCCCCCCeEEEEEEEeccee--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee----cC
Q psy14060         92 ---HKGKIQERVVDASELDDDGYYAITERKYYAL--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD----PL  162 (283)
Q Consensus        92 ---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~----p~  162 (283)
                         .......|.|.++.+.|+|.|+|.|.|..|.  .....+.+..+|.....+.... .....+.|.|.....    +.
T Consensus       215 ~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~-~~~~~v~l~w~~~~~~g~~~i  293 (731)
T 2v5y_A          215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLAS-VGATYLWIQLNANSINGDGPI  293 (731)
T ss_dssp             ECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEE-ECSSCEEEECCCSSBSSCSCC
T ss_pred             EeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceec-cCCceEEEEeCCcccCCCCcc
Confidence               1112478999999999999999999999885  2223344444554332222222 234578888875321    11


Q ss_pred             C--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE--eCCceeEEEEEEEEE
Q psy14060        163 P--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE--NRGGKAKCSANLVVE  224 (283)
Q Consensus       163 ~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~  224 (283)
                      .  .+.|...+.     ....+ .......+.|.++...+...|.|.|.  |..|....+..+.+.
T Consensus       294 ~~Y~v~~~~~~~-----~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~  353 (731)
T 2v5y_A          294 VAREVEYCTASG-----SWNDR-QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR  353 (731)
T ss_dssp             CEEEEEEEESSS-----SCEEE-EECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE
T ss_pred             EEEEEEEEECCC-----CceEE-eccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee
Confidence            2  455654321     11112 22233568999999999889999999  988875544333333

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.06  E-value=1.1e-09  Score=82.66  Aligned_cols=150  Identities=15%  Similarity=0.063  Sum_probs=92.1

Q ss_pred             eeecCcEEEEEEEccCc-cceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc-eeeeeeccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY-ALSDLSEQKPAKPPVFT  137 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-~~~~~~~~~~~~~p~~~  137 (283)
                      |..|+++.|.|.+.... ....+...-.+...+...+...|.|.+++  |.|.|.|.+.... .......+.+..+|...
T Consensus        14 V~~G~S~~l~Cs~~c~~p~~~glet~l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v   91 (192)
T 1zxq_A           14 VEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQV   91 (192)
T ss_dssp             ECTTEEEEEEEEESCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCC
T ss_pred             EeCCCcEEEEEECCCCCccccccccccCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCc
Confidence            56788999999996432 32222222233334444567789999998  8899999887653 34444555555555432


Q ss_pred             -ecCCceeecCCCcEEEEEEEee-ecCC--EEEEEeCCEecCCCCCeEEEEe-CC-EEEEEEcCCCCCCCE-EEEEEEEe
Q psy14060        138 -KKIQPCRAFEQDQARFEVEFDG-DPLP--TIKWFREDFPITSSPDFQIHTF-ST-KSILIMRQVFMEDSG-VFAVIAEN  210 (283)
Q Consensus       138 -~~~~~~~~~~g~~v~l~C~~~g-~p~~--~~~W~k~~~~~~~~~~~~~~~~-~~-~~~l~i~~~~~~d~G-~Y~C~a~n  210 (283)
                       ..+.+..+..|+.++|.|.+.+ +|..  .+.|++++..+........... .. ..++.+. +.++|.| +|+|.|..
T Consensus        92 ~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~~~~-~~r~D~g~~~sC~A~L  170 (192)
T 1zxq_A           92 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNST-ADREDGHRNFSCLAVL  170 (192)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEE-CCGGGGGCEEEEEEEE
T ss_pred             eEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEEEEe-cchhhCCceEEEEEEe
Confidence             2323346889999999999975 5654  5899999887642100000000 11 1123343 5555666 99999976


Q ss_pred             CC
Q psy14060        211 RG  212 (283)
Q Consensus       211 ~~  212 (283)
                      ..
T Consensus       171 ~L  172 (192)
T 1zxq_A          171 DL  172 (192)
T ss_dssp             EC
T ss_pred             cC
Confidence            55

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.05  E-value=7.9e-10  Score=76.91  Aligned_cols=84  Identities=11%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             CCeeeeeeeEEEEeCCCCCCCCCceeee-cCCeeeecCcEEEEEEEccCccce-----EEeecCCCEEEEEcCCEEEEEE
Q psy14060         28 DRSGVSTEETKIIDGRKVSVPEPSASGV-HGKEIHTAKSQQVQKEKKGDKEIV-----RKITATETTEMEHKGKIQERVV  101 (283)
Q Consensus        28 ~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~v~~g~~v~l~C~~~g~~~i~-----~~~~~~~~~~~~~~~~~~~L~i  101 (283)
                      ..|..+....|.|...+     |.|... ....+.+|+.+.|.|.+.+.|.+.     ..+....++.+...+....|.|
T Consensus         3 s~g~~~~~~~l~V~~~p-----p~~~~~~~~~~v~~G~~v~l~C~~~~~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I   77 (113)
T 2edh_A            3 SGSSGRTSAMLTVRALP-----IKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQI   77 (113)
T ss_dssp             CCCCCCCCCCCCCCCSC-----CCEEECCCCCEECTTSCEEEEEEESSCCCCEEEESSSBCCCSSSEEEEEETTEEEEEE
T ss_pred             CCCCCcEEEEEEEEcCC-----CcccccCCceEEeCCCeEEEEEEECCCCcEEEEECCEECCCCCcEEEEECCCEEEEEE
Confidence            34556666677777543     333322 223477788999999999887654     2344567888887778889999


Q ss_pred             ccCCCCCCeEEEEEE
Q psy14060        102 DASELDDDGYYAITE  116 (283)
Q Consensus       102 ~~~~~~D~G~Y~C~a  116 (283)
                      .+++.+|+|.|+|.+
T Consensus        78 ~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           78 RGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CSCCSTTCEEEEEEE
T ss_pred             CCCChhhCEEEEEEe
Confidence            999999999999999

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.63  E-value=1.8e-11  Score=92.95  Aligned_cols=129  Identities=13%  Similarity=0.092  Sum_probs=79.5

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--e---cC---------CCCCeEEEE--eCCEEEEEEcCCCCCCCE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--P---IT---------SSPDFQIHT--FSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~---~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~G  202 (283)
                      .+..+.+.+|++++|.|.+.+.+.+.+.|||...  .   +.         ...++.+..  ......|.|.++..+|+|
T Consensus         6 ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG   85 (185)
T 3c6l_A            6 SPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSA   85 (185)
Confidence            3556788899999999999876656899998641  1   10         112333321  123457999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCCeeEEeeCCEEe
Q psy14060        203 VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVSSLS  277 (283)
Q Consensus       203 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~l  277 (283)
                      .|+|.+.+.......-..|.|....     ...+|.+......     .+.++|.|.+.| +|.|.|.|+.+....
T Consensus        86 ~Y~C~~~~~~~~fg~gT~L~V~~~~-----~~~~P~V~~~~~~-----~~~vtL~C~~~gf~P~p~v~~~~~~~~~  151 (185)
T 3c6l_A           86 TYFCAASDNRIFFGDGTQLVVKPNI-----QNPEPAVYQLKDP-----RSQDSTLCLFTDFDSQINVPKTMESGTF  151 (185)
Confidence            9999987621111112345554310     0012333322111     127899999988 688899997766544

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.04  E-value=1.3e-09  Score=87.94  Aligned_cols=129  Identities=13%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             CceeecCCCcEEEEEEEee--ecCCEEEEEeCC--E---ec---CC-----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI---TS-----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~--~---~~---~~-----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.+.+  .....+.|||..  .   .+   ..           ..++.+....  ...+|.|.++.
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            3467899999999999975  245789999742  1   11   00           1345544332  34679999999


Q ss_pred             CCCCEEEEEEEEeC------Cc------------e-e------EEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC
Q psy14060        198 MEDSGVFAVIAENR------GG------------K-A------KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ  252 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~------~g------------~-~------~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~  252 (283)
                      .+|+|.|+|.+.+.      .+            . .      .....+.|....      ..+|.+........+..|+
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~------~~~P~v~~~~~~~~~~~g~  184 (267)
T 3u1s_H          111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS------TKGPSVFPLAPSSKSTSGG  184 (267)
T ss_dssp             GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC------CBCCEEEEECCCGGGEETT
T ss_pred             hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC------CCCCEEEEecCCcccCCCC
Confidence            99999999998621      01            0 0      012345554210      1355555322222335799


Q ss_pred             eEEEEEEEEee-C-CCeeEEeeCCEEe
Q psy14060        253 LARFDAKISAT-K-PLDVYWLKVSSLS  277 (283)
Q Consensus       253 ~v~L~C~~~g~-p-~~~v~W~~~g~~l  277 (283)
                      .++|.|.+.+. | .+.+.|  ||..+
T Consensus       185 ~~~l~C~~~~~~p~~~~v~W--~~~~~  209 (267)
T 3u1s_H          185 TAALGCLVKDYFPEPVTVSW--NSGAL  209 (267)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE--GGGTB
T ss_pred             cEEEEEEEeEEECCCeEEEE--CCccc
Confidence            99999999874 4 347999  66544

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.04  E-value=1.2e-08  Score=76.98  Aligned_cols=127  Identities=7%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +...+....+..|+++.|.|.+.. +.+. +.|--.   +   .+..+........+.|.++.  |.|.|.|.+.-....
T Consensus         5 v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet~---l---~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~   75 (192)
T 1zxq_A            5 VHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETS---L---NKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQ   75 (192)
T ss_dssp             EEEESSEEEECTTEEEEEEEEESC-SSCSEEEEECS---S---EEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEE
T ss_pred             EEEeCCCcEEeCCCcEEEEEECCC-CCccccccccc---c---CceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcc
Confidence            345566778899999999999965 5554 455321   1   11112223344569999998  789999999876666


Q ss_pred             eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEe-eCCC--eeEEeeCCEEecCC
Q psy14060        215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL--DVYWLKVSSLSDVK  280 (283)
Q Consensus       215 ~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~g~~l~~~  280 (283)
                      ....+.|.|...         |-.....+.+..+.+|+.++|.|.+.+ .|..  ++.|+++++.|..+
T Consensus        76 ~~~~~~itVy~~---------P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~  135 (192)
T 1zxq_A           76 ESMNSNVSVYQP---------PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYE  135 (192)
T ss_dssp             EEEEEEEEECBC---------CCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEEeC---------CCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeec
Confidence            777888888762         223333323446899999999999975 5655  48999999998644

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.04  E-value=2.1e-09  Score=90.45  Aligned_cols=118  Identities=14%  Similarity=0.054  Sum_probs=75.5

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCcee-ecCCC-cEEEEEEEeee-cC--CEEEEE
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCR-AFEQD-QARFEVEFDGD-PL--PTIKWF  168 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~-~~~g~-~v~l~C~~~g~-p~--~~~~W~  168 (283)
                      +..+|.|.+++.+|+|.|.|.+.+..+. .....+.+..+|.+...+.... +..|+ .++|.|.+.+. |.  +.++|+
T Consensus       252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~  331 (401)
T 3f8u_B          252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWE  331 (401)
T ss_dssp             EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEE
T ss_pred             CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEE
Confidence            5689999999999999999999887653 2334455556787766555444 45676 79999999885 65  799995


Q ss_pred             -eCCE---ecCCCC-----CeEEEEeCC---EEEEEEcCCCC-CCCEEEEEEEEeCC
Q psy14060        169 -REDF---PITSSP-----DFQIHTFST---KSILIMRQVFM-EDSGVFAVIAENRG  212 (283)
Q Consensus       169 -k~~~---~~~~~~-----~~~~~~~~~---~~~l~i~~~~~-~d~G~Y~C~a~n~~  212 (283)
                       +++.   .+....     ......++.   .+.|.+..... .+.+.|+|.+.|..
T Consensus       332 ~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          332 LRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             ecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence             7652   111100     000000111   22455555432 34459999999876

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.03  E-value=1.2e-09  Score=76.16  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EE------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RK------ITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.|.|... .|      +....++.+........|.|.+++.+|+|.|+|.+.|..+.
T Consensus        18 ~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   88 (114)
T 2cqv_A           18 KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS   88 (114)
T ss_dssp             EEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             EEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCc
Confidence            467788999999999988433 33      33445777776666889999999999999999999999884

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=6.2e-10  Score=75.70  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             eeeecCcEEEEEEEccCc--cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPA  131 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~  131 (283)
                      .+.+|+.+.|.|.+  .|  .+.     ..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|. .......+.+.
T Consensus        18 ~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~   94 (100)
T 2yuz_A           18 TVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVI   94 (100)
T ss_dssp             EEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEE
T ss_pred             EEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEe
Confidence            47788899999999  44  443     4556677888888888899999999999999999999998 32223334444


Q ss_pred             CCC
Q psy14060        132 KPP  134 (283)
Q Consensus       132 ~~p  134 (283)
                      .+|
T Consensus        95 ~~P   97 (100)
T 2yuz_A           95 SGP   97 (100)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            444

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.01  E-value=3.1e-09  Score=73.40  Aligned_cols=77  Identities=12%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ecC---------CCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PIT---------SSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+...+..+.+.+|++++|.|.+.+.+.+.+.|||+.  .   .+.         ...++.+.......+|.|.++..+|
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   84 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPED   84 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhh
Confidence            4455567788999999999999988777899999863  1   110         1245666555667789999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|.+.+.
T Consensus        85 sG~Y~C~~~~~   95 (109)
T 2q20_A           85 IATYYCQQYDN   95 (109)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.01  E-value=3.8e-10  Score=75.26  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             eecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         61 HTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        61 ~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+|+.++|.|.+.+.+ .+.     +.+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..+..
T Consensus        19 ~~g~~v~l~C~v~~p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   87 (91)
T 2lvc_A           19 ITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAYF   87 (91)
T ss_dssp             CTTCCEEEEEECSCTTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSCEEEE
T ss_pred             ECCCcEEEEEEECCCCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcceEEEE
Confidence            4688999999997733 443     34556778888888889999999999999999999998875543

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.00  E-value=2.3e-08  Score=77.83  Aligned_cols=150  Identities=9%  Similarity=0.032  Sum_probs=92.9

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEee---------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKIT---------ATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~~---------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +..|+.|+|.|....+-  .+.          +.|.         ..+|+.-...+...+|+|.++..+|++.|.|...+
T Consensus        13 ~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~A~YyC~~~~   92 (259)
T 4f9l_D           13 ASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDIATYYCQQGH   92 (259)
T ss_dssp             BCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhCEEEEEeecC
Confidence            56788999999875332  111          2221         12466666677889999999999999999997654


Q ss_pred             cc----eeeeeeccCCC-CCCeE-------------------EecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--
Q psy14060        119 YY----ALSDLSEQKPA-KPPVF-------------------TKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--  170 (283)
Q Consensus       119 ~~----~~~~~~~~~~~-~~p~~-------------------~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--  170 (283)
                      ..    |......++.. .+|..                   +.......+.+|+++.|.|.++|..  ...+.|+|.  
T Consensus        93 ~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaP  172 (259)
T 4f9l_D           93 SYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQRP  172 (259)
T ss_dssp             SSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             CCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEEEEECC
Confidence            32    21111111111 01110                   1111223578899999999999853  346788874  


Q ss_pred             CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        171 DFP------IT-S----------SPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       171 ~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      |+.      |. .          ..++.+..+.  +...|.+.+++.+|.+.|+|...
T Consensus       173 GkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          173 GQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             TSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence            221      11 1          1356666554  35578999999999999999754

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.00  E-value=2.3e-09  Score=83.83  Aligned_cols=133  Identities=15%  Similarity=0.170  Sum_probs=84.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--EecC----------CCCCeEEEE--eCCEEEEEEcCCCCCCCE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPIT----------SSPDFQIHT--FSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~G  202 (283)
                      ...+..+.+.+|++++|.|.+.+. ...+.|||..  ....          ...++.+..  ......|.|.++..+|+|
T Consensus         5 ~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG   83 (229)
T 3mbe_C            5 EQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSG   83 (229)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTTCB
T ss_pred             EEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccCCC
Confidence            445666789999999999999876 6689999842  2111          123444442  234678999999999999


Q ss_pred             EEEEEEEeCC--ce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEe
Q psy14060        203 VFAVIAENRG--GK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLS  277 (283)
Q Consensus       203 ~Y~C~a~n~~--g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l  277 (283)
                      .|+|.+....  ..  ...-..|.|.....     ..+|.+....     .....++|.|.+.+..+. .+.|+++|..+
T Consensus        84 ~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~-----~p~P~Vf~~~-----~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~  153 (229)
T 3mbe_C           84 TYFCAAEDGGSGNKLIFGTGTLLSVKPNIQ-----NPEPAVYQLK-----DPRSQDSTLCLFTDFDSQINVPKTMESGTF  153 (229)
T ss_dssp             EEEEEEECSSSTTCEEECCCCEEEEECCCS-----SCCCEEEEEE-----CTTCTTCEEEEEESCCSSSCCCCCCSSSEE
T ss_pred             CEEEEEEeCCCcccceeCCCEEEEEecccC-----CCCCEEEEcc-----CCCCCEEEEEEccccCCceEeEeeccCceE
Confidence            9999997532  11  11113566664210     0133333211     111348899999985444 69999999877


Q ss_pred             cCC
Q psy14060        278 DVK  280 (283)
Q Consensus       278 ~~~  280 (283)
                      ...
T Consensus       154 ~~~  156 (229)
T 3mbe_C          154 ITD  156 (229)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            543

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.99  E-value=2.1e-09  Score=75.53  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ecC---------CCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PIT---------SSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+...+..+.+.+|++++|.|.+.+.+.+.+.|||..  .   .+.         ...++.+.......+|.|.++..+|
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   84 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPED   84 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             eeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHH
Confidence            3445567788999999999999988777899999853  1   110         1245666555667789999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|.+.|.
T Consensus        85 sG~Y~C~~~~~   95 (119)
T 2e27_L           85 AATYYCLQYDN   95 (119)
T ss_dssp             CEEEEEEECGG
T ss_pred             CEEEEEEEccC
Confidence            99999999874

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.99  E-value=6.3e-09  Score=72.11  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC--E----ecCCCCCeEEEEe--CCEEEEEEcCCCCCCCEEEE
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F----PITSSPDFQIHTF--STKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +...+..+.+.+|++++|.|.+.+.  +.+.+.|||+.  .    .+....++.+...  .....|.|.++..+|+|.|+
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   82 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYK   82 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEE
Confidence            3445677889999999999999875  46789999852  2    2323345554332  34678999999999999999


Q ss_pred             EEEEe
Q psy14060        206 VIAEN  210 (283)
Q Consensus       206 C~a~n  210 (283)
                      |.+.+
T Consensus        83 C~~~~   87 (111)
T 2ywz_A           83 CQADY   87 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99988

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=94.65  Aligned_cols=90  Identities=19%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe-cCCC---CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP-ITSS---PDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~-~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      +|.+...+....+.+|+.++|.|.+ +.|.|.+.|++++.. +...   .++.+...   .+|.|.+++.+|+|.|+|.|
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a  416 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD---GTLNFTNVTVQDTGMYTCMV  416 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTT---CCEEESSCCSTTCEEEEEEE
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccC---CeEEEccCChhhCEEEEEEE
Confidence            6777777888899999999999999 568999999995543 3222   13333222   35999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEec
Q psy14060        209 ENRGGKAKCSANLVVEEK  226 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~~  226 (283)
                      .|..|....++.+.|.+.
T Consensus       417 ~N~~G~~~~~~~~~v~~~  434 (440)
T 3zyj_A          417 SNSVGNTTASATLNVTGT  434 (440)
T ss_dssp             ECSSCEEEEEEEEEEC--
T ss_pred             EcCCCcEEEEEEEEEecc
Confidence            999999999999988763

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-09  Score=73.23  Aligned_cols=63  Identities=13%  Similarity=0.157  Sum_probs=51.1

Q ss_pred             eeeecCcEEEEEEEccCc-c--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDK-E--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.++|.|.+.+.+ .  +.     ..+....++.+...+....|.|.+++.+|+|.|+|.+.|...
T Consensus        19 ~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   89 (104)
T 2eny_A           19 EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTS   89 (104)
T ss_dssp             EEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTEEE
T ss_pred             EEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCeeE
Confidence            577889999999999876 3  33     344556678888778889999999999999999999876543

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.98  E-value=2.6e-09  Score=73.53  Aligned_cols=76  Identities=11%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ecC---------CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PIT---------SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...+..+.+.+|++++|.|.+.+.+.+.+.|||..  .   .+.         ...++.+........|.|.++..+|+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHC
Confidence            344566788999999999999988777889999853  1   110         12456665556677899999999999


Q ss_pred             EEEEEEEEeC
Q psy14060        202 GVFAVIAENR  211 (283)
Q Consensus       202 G~Y~C~a~n~  211 (283)
                      |.|+|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (107)
T 1i8k_A           84 GDYYCLQSFN   93 (107)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999999764

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.98  E-value=6.5e-09  Score=69.46  Aligned_cols=85  Identities=13%  Similarity=0.300  Sum_probs=60.6

Q ss_pred             CceeecCCCcEEEEEEEee-ecCCEEEEEeCC----EecCCCCCe--EEEEeC--CEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFRED----FPITSSPDF--QIHTFS--TKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~----~~~~~~~~~--~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +...+..|+++.|.|.+.+ .+.|+++|.|.+    ..+......  .....+  ....|+|.++...|+|.|+|.|.+.
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~  101 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN  101 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence            4467899999999999976 479999999976    333322211  122111  3558999999999999999999998


Q ss_pred             CceeEEE-EEEEEEe
Q psy14060        212 GGKAKCS-ANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~-~~l~v~~  225 (283)
                      .|...+. ..|.|.+
T Consensus       102 ~g~ieSHs~ti~V~~  116 (122)
T 1xau_A          102 SQVINSHSVTIHVRE  116 (122)
T ss_dssp             TEEEECCCEEEEEC-
T ss_pred             CCceeeeEEEEEEEe
Confidence            8875543 4555543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.97  E-value=2.3e-09  Score=73.86  Aligned_cols=63  Identities=13%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             eeeecCcEEEEEEEccCccce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.++|.|.+.+.|.+.     ..+....++.+...+....|.|.+++.+|+|.|+|.+.|...
T Consensus        19 ~v~~G~~v~l~C~~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   86 (108)
T 2dm7_A           19 EASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERT   86 (108)
T ss_dssp             EEETTSCEEEEEEBSSSCCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETTEEE
T ss_pred             EEeCCCcEEEEEEeCCCCeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcCCEE
Confidence            477788999999999888664     234445677777777888999999999999999999966533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-19
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-17
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-16
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-16
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-15
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-14
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-13
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-12
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-12
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	6e-12
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-11
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-11
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-10
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-10
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-09
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	9e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	9e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-06
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	7e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	6e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.003

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 5e-19
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           P   +  +  +    +      +  G    T  W +    I  S   ++      S L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
                E  G + ++ EN+ G  +   NL V +K         PP+ 
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-------PPAG 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 72.2 bits (176), Expect = 8e-17
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
           +E+KP   P FTK I      E   ARF+ + +G P P + WF++D P+  S  FQI   
Sbjct: 1   AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 186 -STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                 L + +V  +D   +   A N  G+A C+A L+VE 
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.1 bits (173), Expect = 2e-16
 Identities = 20/93 (21%), Positives = 31/93 (33%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           P F  K       E   A F         P + W ++D  +  S  +          L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
            +V  +D G + V A+N  G  +    L V   
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 2e-16
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSI 190
           + P   ++IQ     +   A F V   G P P  +W++    I  S              
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           L++R V  EDS    V A N  G+    A L+V+ K
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 5e-15
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSI 190
                 K++    A   +  +F     G+P+PT++W +             +        
Sbjct: 6   NTEKMEKRLHAVPA--ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS 63

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           LIM  V   D G +  + EN  G    + +L V
Sbjct: 64  LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-14
 Identities = 26/90 (28%), Positives = 46/90 (51%)

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 195
              K +    +E + ARF  + DG+P+PT+ W R+   +++S   Q+ T   KS   +  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 196 VFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
           V   D G ++V+ EN  GK +    L +++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.7 bits (154), Expect = 8e-14
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
           P +   I    A      R+     G P P ++W R+  P+ S    ++        L  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRF 57

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
            ++ +EDSG++  +AEN+ G    SA L V+
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 1e-13
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTK 188
           PP    +       A          + DG P PT+ W ++  PI +    D +       
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
           S L +R V   D   +  IAEN+ G+   S +L V  K
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPD---------F 180
             +F  + Q           F     G  L   P +KWF+  +   SS           +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
              +      L +       +G +      +      + NL V E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (141), Expect = 5e-12
 Identities = 18/92 (19%), Positives = 35/92 (38%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P      +  +         EV+F G P PT  W   D     +P+  +   S+ + + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                  DSG + +  +N  G+ +    ++V+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.2 bits (140), Expect = 6e-12
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 133 PPVFTKKIQ-PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
            P + +K +      +        +  G P P + W     P++        +      L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG-----L 56

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           +++ V   D G +   A N  G       + V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 6e-12
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF--QIHTFSTKSILIM 193
            TK+++   A+  ++   E E   +    +KWF+    I   P    +I     K ILI+
Sbjct: 3   VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
                 D+  ++V+        + SA L V+ K
Sbjct: 62  EGATKADAAEYSVMTTG----GQSSAKLSVDLK 90

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 8e-12
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 127 EQKPAKPPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
           ++K  K   F KK++P  +  +  + R  VE   D    +KW +    I  S    I   
Sbjct: 1   DEK--KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES 57

Query: 186 S-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
              K  L + Q  + D   +  +        KCS  L V+E
Sbjct: 58  IGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVKE 94

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P +  K      A        E    G+P+P IKW + D              S++ +L 
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------QTSKWLSSEPLLH 58

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           ++ V  ED G +   AEN  G+      +++ 
Sbjct: 59  IQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 133 PPVFTKKIQPCRAFE---QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
            PVF ++       E   +++         +P  T +W      +   PD +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR-LVAGD 62

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAK-CSANL 221
           ++I   V  +D+G +  +A N  G      A+L
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-11
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 133 PPVFTKKI-QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-------------P 178
            P+    +             F  +   D  P I+W +      S               
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 179 DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
                T     +L +R V  ED+G +  +A N  G +  SA L V
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 8e-11
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIH-------TFSTKSILIMRQVFMEDSGVFA 205
                DG P P+++W      +  +                    L + Q    ++G + 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 206 VIAENRGGKAKCSANLVVEEK 226
           ++A N  G+A  S      + 
Sbjct: 80  LLAANPFGQASASIMAAFMDN 100

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 195
             K +     F  + A FE+E   +P    +W  +  P+T+SPD +I     K ILI+  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 196 VFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
             +  +G  +  A N    AK +ANL V+E
Sbjct: 63  CQLGMTGEVSFQAAN----AKSAANLKVKE 88

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 135 VFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDFQIHTFSTK--- 188
           +F +K Q       +   F  +   + L   PTIKWF+  +   +S   +          
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 189 ------SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
                   + + +     +G +      +     CS +L V E   
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 107

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----PDFQIHTFSTK 188
           PP      +P    E      E    G+P PT+ W     P+  S     ++      ++
Sbjct: 5   PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
             L+  +    ++G + +IA+N  G A  + N    ++
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-10
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP---ITSSPDFQIHTFSTK 188
           + P F + IQ         A F+    G  +   + + +                +    
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVV 223
           +   +      D+G +  +    GG      A LVV
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 7e-10
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
            P  T    P                G+P P ++WF     +  S         T     
Sbjct: 4   APTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
              L +      ++G + +IA+N  GK +   +      
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 7e-10
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           PP       P      ++A       DG P     WF++   + ++   +   F   S  
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 192 IM--------RQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           I           V   DSG +   A+N  G A  S    ++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-09
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
            P    ++        D      + +G  L    W   +   + +   +     +  + +
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQS-ATVMKSGGLPSLGLTL 60

Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
                  +       AEN  G+A+ S  + V
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 13/72 (18%), Positives = 23/72 (31%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
             +   TI W+++D     S +        K  L      +EDSG +  +  N     + 
Sbjct: 28  PNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI 87

Query: 218 SANLVVEEKRQG 229
             +    E    
Sbjct: 88  KISAKFVENEPN 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 8/99 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI-------KWFREDFPITSSPDFQIHTF 185
           PP            E + A    + +  P  T            +     S   F + + 
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 186 STKSILIMRQVFMED-SGVFAVIAENRGGKAKCSANLVV 223
             +S L +  + ME   G +     +  G  +    L V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 9e-09
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 1/90 (1%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
            +F     P    E + A    +      PTI W  +   +    D +    S   + I 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
             +   D G +               ++ V
Sbjct: 62  G-IKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--- 188
           PP       P  A   ++A     E DG P     WF++   + ++P       ++    
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 189 ----SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
                 L+   +   D+G ++  A N  G    S  + +E
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 14/93 (15%), Positives = 28/93 (30%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
           K PV   +       E +    E   +G+       +++D    +  +        +  L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
           +  +    D G +   AE   G A        +
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 34/127 (26%)

Query: 133 PPVFT-----KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-------- 179
           PP        +          ++ R +V   GDP PT+ W +       +P         
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 180 ---------------------FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
                                 ++ T   +SI  +     ED GV+ V  +N  G+ + +
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 219 ANLVVEE 225
             + V +
Sbjct: 124 LTVKVID 130

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 1e-08
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
             V  ++ +           F        P  T+ W R       S     +      IL
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-----GIL 56

Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
            +R V   D+G +     N     + +A L V+
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 13/105 (12%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--- 188
           +P + +   +        Q +      G       W      I          + +    
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 189 ---------SILIMRQVFMEDSGV-FAVIAENRGGKAKCSANLVV 223
                    ++L + ++        F   A+N  G       L+ 
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITSSPDFQIHTFSTK--- 188
             ++ K+         D    E         P + W + +       + +  ++  +   
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 189 --SILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEE 225
              IL    V   D+G +   A  +    +  S  L V +
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 14/114 (12%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF-REDFPITSSPDFQIH------TF 185
           PP+ +   Q   A   ++ + +      P P    +  ++  + S    +          
Sbjct: 7   PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 186 STKSILIMRQVFME-DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS 238
              S L +  +       ++   A N  G       L  +     G     P S
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG-----PSS 114

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQVFMEDSGVF 204
           +    +     +G   P I+W ++   + +     I          L ++ V   D+G +
Sbjct: 10  QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69

Query: 205 AVIAENRGGKAK-CSANLVVE 224
               E+ G         L VE
Sbjct: 70  WCQVEDGGETEISQPVWLTVE 90

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 9e-07
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 15/95 (15%)

Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
            P   ++  P      E  Q     +  G+PLP +K  ++        +           
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------- 54

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
                   +  G +   A +  G+      + V  
Sbjct: 55  ------TRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFS 186
           K    P +  K     A   D       +  +P+    +F+  +D           H  +
Sbjct: 1   KGEPVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT 58

Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVV 223
           +   L+ +    ED GV+    +N  GK +  S  L V
Sbjct: 59  SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 7e-06
 Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
           KP                  +        D   +++W   D          + + + +S+
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-----LGAVQSDTGRSV 56

Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
           L +R   +  +G    +    G   + +  L+V
Sbjct: 57  LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 11/92 (11%)

Query: 134 PVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
           P FT + +          +   E        TI W+R    I            T     
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTG---- 57

Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVV 223
                +  S +F+  A N  G A   +A + +
Sbjct: 58  -----VTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
           + + LP ++W+++  P+       IH    K  LI+  V  +  G +   A       + 
Sbjct: 30  ENNELPKLQWYKDCKPL---LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 86

Query: 218 SANLVVE 224
               V+E
Sbjct: 87  PITRVIE 93

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 9/99 (9%), Positives = 17/99 (17%), Gaps = 6/99 (6%)

Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDG---DPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
           P        P       Q     + +G       T+   R +  +             + 
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE---PAVGEPAEV 60

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
              +          F+   E                  Q
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ 99

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 5/95 (5%)

Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
           P + P          +   D                  +    P                
Sbjct: 3   PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA--GSHPSRWAGMGR 60

Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
            L++R V + DSG ++     R      + +L+V+
Sbjct: 61  RLLLRSVQLHDSGNYSCYRAGRPA---GTVHLLVD 92

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 3/75 (4%)

Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
           D         G   P   W  +     +       T ST   L M  V   +   +   A
Sbjct: 17  DSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTST---LTMNPVSFGNEHSYLCTA 73

Query: 209 ENRGGKAKCSANLVV 223
                K +    + +
Sbjct: 74  TCESRKLEKGIQVEI 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 144 RAFEQDQARFEVEFDGDPLPTIKWFREDFP--------ITSSPDFQIHTFSTKSILIMRQ 195
           R  E +  +    + G   P ++W  +              +  ++       + +  + 
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 196 VFMEDSGVFAVIAENRGGKAKCSANLVV 223
           V  ED+G +  +    GG +     + +
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKL 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.73
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.63
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.6
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.58
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.54
d2avga1	110	Cardiac myosin binding protein C, different domain	99.54
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.54
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.53
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.51
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.5
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.5
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.49
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.49
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.48
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.48
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.47
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.45
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.45
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.44
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.43
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.43
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.43
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.42
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.42
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.37
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.32
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.3
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.3
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.27
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.25
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.23
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.23
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.18
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.13
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.1
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.06
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.04
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.03
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.03
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.01
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.98
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.98
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.95
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.95
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.95
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.95
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.93
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.93
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.93
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.91
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.89
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.87
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.85
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.84
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.84
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.83
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.83
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.82
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.81
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.78
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.78
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.78
d2avga1	110	Cardiac myosin binding protein C, different domain	98.77
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.75
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.74
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.73
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.72
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.71
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.69
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.69
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.68
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.68
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.66
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.66
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.63
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.62
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.61
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.6
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.6
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.58
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.57
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.56
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.55
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.53
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.53
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.52
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.52
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.52
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.51
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.5
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.5
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.5
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.49
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.48
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.48
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.48
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.48
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.46
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.45
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.45
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.45
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.45
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.43
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.42
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.42
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.41
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.41
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.41
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.39
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.39
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.36
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.36
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.36
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.35
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.35
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.32
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.31
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.31
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.3
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.3
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.3
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.3
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.29
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.28
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.28
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.27
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.27
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.27
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.27
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.26
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.26
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.26
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.25
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.24
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.23
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.22
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.21
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.2
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.19
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.18
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.17
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.15
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.14
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.14
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.14
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.1
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.09
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.09
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.08
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.08
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.02
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.02
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.01
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.01
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.01
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.0
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.99
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.98
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.97
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.96
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.95
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.95
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.94
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.93
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.93
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.93
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.92
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.91
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.91
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.88
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.87
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.87
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.87
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.86
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.85
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.84
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.84
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.84
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.83
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.83
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.83
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.82
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.82
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.81
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.81
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.8
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.79
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.79
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.78
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.78
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.77
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.77
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.77
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.76
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.75
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.75
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.74
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.74
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.74
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.73
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.73
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.73
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.72
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.71
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.7
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.7
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.7
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.69
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.69
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.68
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.67
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.66
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.65
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.65
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.64
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.64
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.64
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.64
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.63
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.62
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.62
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.62
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.62
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.6
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.6
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.59
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.58
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.57
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.57
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.56
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.56
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.55
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.55
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.54
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.54
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.54
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.53
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.52
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.52
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.51
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.5
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.49
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.48
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.47
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.46
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.46
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.45
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.45
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.44
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.44
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.44
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.44
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.44
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.41
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.41
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.41
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.4
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.4
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.39
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.38
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.38
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.38
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.36
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.36
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.35
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.34
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.34
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.33
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.33
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.32
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.3
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.3
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.29
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.29
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.28
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.28
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.27
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.27
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.27
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.27
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.26
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.25
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.24
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.24
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.23
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.22
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.22
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.22
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.21
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.21
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.2
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.19
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.17
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.17
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.17
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.15
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.15
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.13
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.12
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.12
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.11
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.1
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.09
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.09
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.09
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.08
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.08
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.05
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.04
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.04
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.03
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.02
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.01
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.01
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.0
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.99
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.99
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.97
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.92
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.91
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.88
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.87
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.87
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.86
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.8
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.78
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.76
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.74
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.72
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.71
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.7
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.68
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.65
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.63
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.62
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.6
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.59
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.59
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.59
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.58
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.56
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.54
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.52
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.49
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.46
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.38
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.37
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.35
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.33
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.3
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.29
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.28
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.25
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.23
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.16
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.13
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.11
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.04
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	95.97
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.94
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=113.27  Aligned_cols=93  Identities=18%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |.|...+.+..+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+......++|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            45666778889999999999999999999999999999999888888888888888999999999999999999999999


Q ss_pred             eeEEEEEEEEEec
Q psy14060        214 KAKCSANLVVEEK  226 (283)
Q Consensus       214 ~~~~~~~l~v~~~  226 (283)
                      ....++.|.|.+.
T Consensus        81 ~~~~~~~l~V~~~   93 (101)
T d2cqva1          81 SRQAQVNLTVVDK   93 (101)
T ss_dssp             EEECCEEEEEECS
T ss_pred             EEEEEEEEEEEec
Confidence            9999999999874

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=2.1e-17  Score=112.11  Aligned_cols=96  Identities=34%  Similarity=0.584  Sum_probs=86.1

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      +..+|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+.... ..++|.|.++..+|.|.|+|.|
T Consensus         5 p~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEE
Confidence            345788988999999999999999999999999999999999999988888776544 4678999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEe
Q psy14060        209 ENRGGKAKCSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~  225 (283)
                      .|..|...+++.|.|..
T Consensus        85 ~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          85 VNSLGEATCTAELLVET  101 (102)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999999999998863

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=3.4e-17  Score=110.17  Aligned_cols=93  Identities=27%  Similarity=0.366  Sum_probs=83.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|||++..+....+..+ ...+..+.|.|.++..+|.|.|+|.|.|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEEC
Confidence            67888888999999999999999999999999999999999988766544 44566789999999999999999999999


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                      .|.....+.|.|..
T Consensus        84 ~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          84 AGETSSHAFLLVQA   97 (98)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEEE
Confidence            99999999999874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=5e-18  Score=114.09  Aligned_cols=93  Identities=22%  Similarity=0.246  Sum_probs=85.2

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .|.|+..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            47888888999999999999999999999999999999999988777777777778899999999999999999999999


Q ss_pred             ceeEEEEEEEEEe
Q psy14060        213 GKAKCSANLVVEE  225 (283)
Q Consensus       213 g~~~~~~~l~v~~  225 (283)
                      |.....+.|.|..
T Consensus        81 G~~~~~~~l~V~~   93 (97)
T d1koaa1          81 GTKEEIVFLNVTR   93 (97)
T ss_dssp             EEEEEEECCEEEC
T ss_pred             CEEEEEEEEEEee
Confidence            9999999999875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1e-17  Score=111.62  Aligned_cols=91  Identities=20%  Similarity=0.308  Sum_probs=84.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +|.+...+.+..+..|+++.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            67888888889999999999999999999999999999999988888888888888899999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy14060        213 GKAKCSANLVV  223 (283)
Q Consensus       213 g~~~~~~~l~v  223 (283)
                      |.....+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T d1wiua_          82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99998888876

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=1.9e-17  Score=109.16  Aligned_cols=87  Identities=28%  Similarity=0.531  Sum_probs=78.6

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      |.|+..+.+..+..|+++.|.|.+.|.|.|.+.|+|++..+....++.+.  .  ..|.|.++..+|.|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--G--GELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--T--TEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--e--eeEEEEeecccCCEEEEEEEEeCCC
Confidence            67888899999999999999999999999999999999999887776653  2  3699999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy14060        214 KAKCSANLVVE  224 (283)
Q Consensus       214 ~~~~~~~l~v~  224 (283)
                      ...+.+.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99988998886

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.68  E-value=1.7e-17  Score=110.03  Aligned_cols=88  Identities=30%  Similarity=0.554  Sum_probs=79.5

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      +..|.++.+..|+++.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++..+|+|.|.|.|.|..|...
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE   82 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence            44567788999999999999999999999999999999887788888888889999999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy14060        217 CSANLVVE  224 (283)
Q Consensus       217 ~~~~l~v~  224 (283)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1tnna_          83 AEFTLTIQ   90 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEE
Confidence            88888764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=1.4e-15  Score=99.97  Aligned_cols=86  Identities=17%  Similarity=0.322  Sum_probs=71.6

Q ss_pred             CCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.|...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+.  ..  .|.|.++..+|+|.|.|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe--ee--eEEECCCChhhCEEEEEEEEEC
Confidence            4667766544 56889999999999999999999999999998653 44332  22  4999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888888776

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.4e-15  Score=101.32  Aligned_cols=93  Identities=26%  Similarity=0.360  Sum_probs=74.2

Q ss_pred             CCeEEecCCc--eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC--eEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--FQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       133 ~p~~~~~~~~--~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      ||.+...+..  ..+..|+++.|.|.+.|.|.|.+.|++++..+.....  .........+.|.|.++..+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            5666654443  3567799999999999999999999999998865422  22233445568999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEe
Q psy14060        209 ENRGGKAKCSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~~  225 (283)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999988888864

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=2.8e-15  Score=99.09  Aligned_cols=86  Identities=27%  Similarity=0.383  Sum_probs=70.2

Q ss_pred             CCeEEec-CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKK-IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+... +....+..|+.+.|.|.+.|.|.|.+.|+|++........      .....|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL------SSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS------BSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee------eeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            5666554 5778899999999999999999999999997765432211      12346999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy14060        212 GGKAKCSANLVVE  224 (283)
Q Consensus       212 ~g~~~~~~~l~v~  224 (283)
                      .|.....+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999888888875

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=97.76  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEec----CC--CCCeEEEEeCCEEEEEEcCCC-CCCCEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPI----TS--SPDFQIHTFSTKSILIMRQVF-MEDSGV  203 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~----~~--~~~~~~~~~~~~~~l~i~~~~-~~d~G~  203 (283)
                      .||.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++...    ..  ..++.+......+.|.|.++. .+|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            47888888888899999999999999999887 79999975322    21  235677777888899999998 579999


Q ss_pred             EEEEEEeCCceeEEEEEEEE
Q psy14060        204 FAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.|.|..|.....+.|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999988888876

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=101.97  Aligned_cols=81  Identities=21%  Similarity=0.389  Sum_probs=67.5

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      ..+..|+++.|.|.+.|.|.|.+.|+|++..+....+. .........+|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46788999999999999999999999999998754332 22223344579999999999999999999999998888888


Q ss_pred             EE
Q psy14060        222 VV  223 (283)
Q Consensus       222 ~v  223 (283)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.4e-15  Score=95.43  Aligned_cols=81  Identities=23%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      |.|...+.+..+..|+++.|.|.+.|.|.| +++|+|++..+.....       .  .+.|.....+|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEEcCC
Confidence            678888999999999999999999999988 8999999998865321       1  14445556679999999999999


Q ss_pred             ceeEE-EEEEEE
Q psy14060        213 GKAKC-SANLVV  223 (283)
Q Consensus       213 g~~~~-~~~l~v  223 (283)
                      |...+ .+.|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            96543 466654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5.4e-15  Score=97.83  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      +.|...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+.......+..... .+|.|.++..+|+|.|+|.|.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            567778899999999999999999999999999999999887654433333222 3599999999999999999999877


Q ss_pred             eeEEEEEEEE
Q psy14060        214 KAKCSANLVV  223 (283)
Q Consensus       214 ~~~~~~~l~v  223 (283)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            7666666555

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.2e-14  Score=91.64  Aligned_cols=80  Identities=15%  Similarity=0.110  Sum_probs=67.7

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL  221 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  221 (283)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+...   ..........|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS---EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceee---eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            355678999999999999999999999987765432   23344567789999999999999999999999999988888


Q ss_pred             EEE
Q psy14060        222 VVE  224 (283)
Q Consensus       222 ~v~  224 (283)
                      .|.
T Consensus        87 ~V~   89 (90)
T d1vcaa2          87 EIY   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=95.04  Aligned_cols=85  Identities=16%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEeCCceeE-
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--KSILIMRQVFMEDSGVFAVIAENRGGKAK-  216 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-  216 (283)
                      |.++.+..|+.+.|.|.+.|.|.|.+.|+|++..+....+..+.....  ...|.|.++..+|+|.|+|.|.|..|... 
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            456788999999999999999999999999999987765555544433  35799999999999999999999999754 


Q ss_pred             EEEEEEEE
Q psy14060        217 CSANLVVE  224 (283)
Q Consensus       217 ~~~~l~v~  224 (283)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            45777764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.8e-14  Score=92.14  Aligned_cols=87  Identities=13%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCeEEecCC-ceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQ-PCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~-~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.++..+. ...+..|+++.|.|.+. |.|.+.+.|++.+..+..     .......+.|.|.+++.+|+|.|+|.|.|
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEe
Confidence            344454444 46778999999999985 778999999997765532     23345667899999999999999999999


Q ss_pred             CCceeEEEEEEEEE
Q psy14060        211 RGGKAKCSANLVVE  224 (283)
Q Consensus       211 ~~g~~~~~~~l~v~  224 (283)
                      ..|..+.++.|.|.
T Consensus        77 ~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          77 GGRTFQHTVQLLVY   90 (90)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEC
Confidence            99998888888763

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-13  Score=94.87  Aligned_cols=92  Identities=20%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeec---CCEEEEEeCCEecCC---CCCeEEEEe----C--CEEEEEEcCCCCCCC
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDP---LPTIKWFREDFPITS---SPDFQIHTF----S--TKSILIMRQVFMEDS  201 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~~~~~W~k~~~~~~~---~~~~~~~~~----~--~~~~l~i~~~~~~d~  201 (283)
                      +.|+..+.+..+..|++++|.|.+.|.|   .|.+.|+|++.....   ..++.....    .  ..+.|.|.++..+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5678888999999999999999999988   579999998754322   223332221    1  135799999999999


Q ss_pred             EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        202 GVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       202 G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|+|.|.|..|...+.+.|.|.+
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999985

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=101.74  Aligned_cols=85  Identities=22%  Similarity=0.361  Sum_probs=71.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC-----------------------------CCCeEEEEeCCEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-----------------------------SPDFQIHTFSTKSI  190 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-----------------------------~~~~~~~~~~~~~~  190 (283)
                      +..+.+..|+.++|.|.+.|.|.|.+.|++++..+..                             ..++.+......+.
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            4567899999999999999999999999997655421                             12345566677789


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      |.|.++..+|+|.|+|.|.|.+|.....+.|.|.
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            9999999999999999999999999888888774

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=2.2e-14  Score=95.83  Aligned_cols=85  Identities=21%  Similarity=0.346  Sum_probs=69.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE--EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ...+..+..|+++.|.|.+.|.|.|.+.|+|++..+.......+  .......+|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            34678899999999999999999999999999999876544323  2223345799999999999999999999999754


Q ss_pred             -EEEEEEE
Q psy14060        217 -CSANLVV  223 (283)
Q Consensus       217 -~~~~l~v  223 (283)
                       .+..|.|
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence             4567766

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=97.77  Aligned_cols=92  Identities=22%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             CCCeEEec-CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC----CC--CeE-----EEE--eCCEEEEEEcCCC
Q psy14060        132 KPPVFTKK-IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS----SP--DFQ-----IHT--FSTKSILIMRQVF  197 (283)
Q Consensus       132 ~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~----~~--~~~-----~~~--~~~~~~l~i~~~~  197 (283)
                      .+|.+... +.+..+..|+++.|.|.+.|.|.|.+.|+|++.....    ..  ...     ...  ......|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            35766654 5788999999999999999999999999997643211    11  111     011  1123579999999


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      .+|.|.|+|.|.|..|...+++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999988876

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=2.9e-14  Score=95.27  Aligned_cols=89  Identities=20%  Similarity=0.329  Sum_probs=70.4

Q ss_pred             CCCeEEecCCceeecCC---CcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQ---DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g---~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .+|.|...+.+..+..|   +++.|.|.+.|.|.|.+.|++++..+.......+..... ..|.|..+..+|.|.|.|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            36788888888777665   789999999999999999999999987654443333333 46888889999999999999


Q ss_pred             EeCCceeEE-EEEE
Q psy14060        209 ENRGGKAKC-SANL  221 (283)
Q Consensus       209 ~n~~g~~~~-~~~l  221 (283)
                      .|..|...+ .+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            999998643 4554

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-15  Score=99.58  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~  211 (283)
                      .|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .........|.|.++..+|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            57888888889999999999999999999999999999877653211  112334567999999999999 799999999


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            999887776654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.6e-14  Score=95.25  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=72.4

Q ss_pred             CCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE--eC---CEEEEEEcCCCCCCCEEEE
Q psy14060        131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT--FS---TKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~--~~---~~~~l~i~~~~~~d~G~Y~  205 (283)
                      ..||.+.....   ...+....+.|.+.|.|.|.+.|++++..+..+.+..+..  ..   ..+.|.|.++...|.|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            45676643322   2356778899999999999999999999998766554432  11   1357999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEEEe
Q psy14060        206 VIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|.|..|.....+.|.|..
T Consensus        79 C~a~N~~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSC
T ss_pred             EEEeccCCEEEEEEEEEEEe
Confidence            99999999999888888764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-14  Score=92.16  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      .+..+.+|++++|.|.+.|.|.|.+.|++++..+...          ...|.|.++..+|+|.|+|.|.|..|.......
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecccceee----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            3456889999999999999999999999976644321          125899999999999999999999999999999


Q ss_pred             EEEEe
Q psy14060        221 LVVEE  225 (283)
Q Consensus       221 l~v~~  225 (283)
                      |.|..
T Consensus        77 v~V~~   81 (84)
T d2nxyb2          77 IVVLA   81 (84)
T ss_dssp             ECEEC
T ss_pred             EEEEe
Confidence            88875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-13  Score=92.96  Aligned_cols=93  Identities=20%  Similarity=0.299  Sum_probs=71.1

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE--eCC--EEEEEEcCCCCCCCEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT--FST--KSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~  205 (283)
                      +..||.++.....   ..+....|.|.+.|.|.|.+.|++++..+....+..+..  ...  .+.|.|.++..+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            4556766433222   234456688899999999999999999998766554332  222  357999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEEEe
Q psy14060        206 VIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       206 C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |.|.|..|.....+.|.|..
T Consensus        79 C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSC
T ss_pred             EEEEcCCCEEEEEEEEEEEe
Confidence            99999999999888888765

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=4.5e-14  Score=92.74  Aligned_cols=80  Identities=21%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             cCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      .+....+..|+++.|.|.+. +.|.+.+.|+|++..+..... .  ...  ..|.|.++..+|+|.|+|.|.|..|....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~--~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-M--DFN--GILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE-E--EET--TEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc-E--eec--eEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            45667899999999999997 567899999999887765432 1  112  26999999999999999999999999888


Q ss_pred             EEEEEE
Q psy14060        218 SANLVV  223 (283)
Q Consensus       218 ~~~l~v  223 (283)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=6.2e-13  Score=88.63  Aligned_cols=88  Identities=14%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecC-CEEEEEeC-CEecCC-CCCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFRE-DFPITS-SPDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~-~~~~~~-~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...|....+..|+++.|.|.+.|.|. +.+.|+++ +..+.. ..++.+. .....++|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            44566788999999999999999875 79999994 444443 4455543 34567789999999999999999999999


Q ss_pred             cee-EEEEEEEEE
Q psy14060        213 GKA-KCSANLVVE  224 (283)
Q Consensus       213 g~~-~~~~~l~v~  224 (283)
                      |.. ...+.|.|.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            874 445676664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=94.19  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=71.5

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec---CCEEEEEeCCEecC---CCCCeEEEE--eC----CEEEEEEcCCCCCCCEE
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP---LPTIKWFREDFPIT---SSPDFQIHT--FS----TKSILIMRQVFMEDSGV  203 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p---~~~~~W~k~~~~~~---~~~~~~~~~--~~----~~~~l~i~~~~~~d~G~  203 (283)
                      |+..+.+..+..|+++.|.|.+.|.|   .|.+.|+|++....   ...++.+..  ..    ..+.|.|.++..+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            55667788999999999999999988   57999999875421   222333222  11    13579999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEEec
Q psy14060        204 FAVIAENRGGKAKCSANLVVEEK  226 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~~~  226 (283)
                      |+|.|.|..|.....+.|.|.+.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcC
Confidence            99999999999999999999863

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.48  E-value=3.5e-14  Score=94.32  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.|...+.+..+..|+.+.|.|.+.|.|.| .+.|+++|..+......... .....+|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccceEEEEeccChhcCeEEEEEEEeC
Confidence            5778888888999999999999999998866 79999999988654432222 233456999999999999999999999


Q ss_pred             CceeEE
Q psy14060        212 GGKAKC  217 (283)
Q Consensus       212 ~g~~~~  217 (283)
                      .|...+
T Consensus        81 ~G~~~s   86 (94)
T d1biha1          81 AGVASS   86 (94)
T ss_dssp             TEEEEC
T ss_pred             CCEEEE
Confidence            997543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-13  Score=90.82  Aligned_cols=84  Identities=25%  Similarity=0.468  Sum_probs=70.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ...+.+..+..|+.+.|.|.+. .|.+.+.||+++..+....  ++.+...+..+.|.|.++..+|+|.|+|.|.|    
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----   78 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   78 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             EcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----
Confidence            4456788999999999999995 5889999999999886543  46777778888999999999999999999955    


Q ss_pred             eEEEEEEEEEe
Q psy14060        215 AKCSANLVVEE  225 (283)
Q Consensus       215 ~~~~~~l~v~~  225 (283)
                      ...++.|.|..
T Consensus        79 ~~~~a~l~V~~   89 (90)
T d1x44a1          79 GQSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ceEEEEEEEEE
Confidence            45667777764

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=91.01  Aligned_cols=87  Identities=23%  Similarity=0.478  Sum_probs=70.7

Q ss_pred             CCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.|...+.+ ..+..|+.+.|.|.+.+ |.+.+.||+++..+..+ .++.+...+..+.|.|.++...|+|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            5666666554 47899999999999855 88999999999998754 467777788889999999999999999999955


Q ss_pred             CCceeEEEEEEEEE
Q psy14060        211 RGGKAKCSANLVVE  224 (283)
Q Consensus       211 ~~g~~~~~~~l~v~  224 (283)
                          ...++.|.|.
T Consensus        84 ----~~~s~~l~V~   93 (94)
T d1pd6a_          84 ----EKCSTELFVK   93 (94)
T ss_dssp             ----EEECCEEEEE
T ss_pred             ----EEEEEEEEEE
Confidence                4455666664

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-14  Score=92.25  Aligned_cols=73  Identities=16%  Similarity=0.117  Sum_probs=61.8

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA  219 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  219 (283)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....             +.+++.+|+|.|.|.|.|..|..+..+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            4567888999999999999999999999999887665322             235678999999999999999998888


Q ss_pred             EEEEEe
Q psy14060        220 NLVVEE  225 (283)
Q Consensus       220 ~l~v~~  225 (283)
                      .|.|..
T Consensus        78 ~l~V~~   83 (84)
T d2oz4a3          78 TVNVLS   83 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888863

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=91.76  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCEecCC---CCCeEEEEeC--CEEEEEEcCCCCCCCEEEEEEE
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITS---SPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~~~~---~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .|+..+....+..|+++.|.|.+.|.| .|.++|+|++..+..   ..........  ....|.|.++..+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            345566777899999999999999998 489999998865532   1222222222  2346999999999999999999


Q ss_pred             EeCCceeE-EEEEEEEEe
Q psy14060        209 ENRGGKAK-CSANLVVEE  225 (283)
Q Consensus       209 ~n~~g~~~-~~~~l~v~~  225 (283)
                      .|..|... ..+.|.|.+
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            99999865 467777764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=91.30  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEE--eCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF--REDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~--k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .|.|. .+.+..+..|+++.|.|.+.|.|.|.+.|+  +++......... .+.......+|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57776 578899999999999999999988765443  233322221121 22222234579999999999999999999


Q ss_pred             eCCceeEEE-EEEEE
Q psy14060        210 NRGGKAKCS-ANLVV  223 (283)
Q Consensus       210 n~~g~~~~~-~~l~v  223 (283)
                      |..|...+. +.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999986544 77776

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.8e-13  Score=90.81  Aligned_cols=84  Identities=15%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             ceeecCCCcEE---EEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-------CEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        142 PCRAFEQDQAR---FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-------TKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       142 ~~~~~~g~~v~---l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+.+..|..+.   +.|.+.|.|.|.+.|++++..+............       ..+.|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            34444455544   5558999999999999999998876655443322       1357999999999999999999999


Q ss_pred             CceeEEEEEEEEEe
Q psy14060        212 GGKAKCSANLVVEE  225 (283)
Q Consensus       212 ~g~~~~~~~l~v~~  225 (283)
                      +|.....+.+.|..
T Consensus        86 ~G~~~~~i~v~v~~   99 (107)
T d1he7a_          86 FGQASASIMAAFMD   99 (107)
T ss_dssp             TEEEEEEEEECCCS
T ss_pred             CCEEEEEEEEEEEc
Confidence            99998888888774

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.5e-13  Score=89.13  Aligned_cols=88  Identities=16%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +|.+.  ..+..+.+|+.+.|.|.+.+ +.+.+.|++++..+....+..+..  ....|.|.++..+|.|.|+|.|.|..
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccchhhceEEEEEEEeCC
Confidence            45443  45677899999999999876 678999999999998877766543  34579999999999999999999998


Q ss_pred             ceeEE-EEEEEEEe
Q psy14060        213 GKAKC-SANLVVEE  225 (283)
Q Consensus       213 g~~~~-~~~l~v~~  225 (283)
                      |...+ .+.|.|..
T Consensus        80 g~~~S~~~~L~V~~   93 (96)
T d1l6za2          80 SVRRSNSIKLDIIF   93 (96)
T ss_dssp             CCEECCCCEEEECC
T ss_pred             CCeEEEeEEEEEEc
Confidence            87654 47777763

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.43  E-value=1.5e-14  Score=94.96  Aligned_cols=85  Identities=31%  Similarity=0.438  Sum_probs=72.4

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      +..++.+..+.+|+++.|.|.+. .|.|.+.|+|+|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|..   
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~---   79 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK---   79 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB---
T ss_pred             EEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE---
Confidence            34456788999999999999984 68899999999999998888999888888999999999999999999986643   


Q ss_pred             EEEEEEEEEe
Q psy14060        216 KCSANLVVEE  225 (283)
Q Consensus       216 ~~~~~l~v~~  225 (283)
                       .++.|.|.+
T Consensus        80 -~sa~l~V~e   88 (89)
T d1tiua_          80 -SAANLKVKE   88 (89)
T ss_dssp             -CCEEEEEEC
T ss_pred             -EEEEEEEEE
Confidence             346666653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.4e-13  Score=94.10  Aligned_cols=84  Identities=23%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             ceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCe--------EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        142 PCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDF--------QIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...+..|+.+.|.|.+. |.|.+.++|+|++..+......        ..........|.|.++..+|+|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            34678999999999985 7899999999999877543221        12223334579999999999999999999999


Q ss_pred             ceeEEE--EEEEEEe
Q psy14060        213 GKAKCS--ANLVVEE  225 (283)
Q Consensus       213 g~~~~~--~~l~v~~  225 (283)
                      |....+  +.+.|.+
T Consensus        91 G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          91 GTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CcEEEEEEEEEEEEe
Confidence            987654  4555553

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=91.48  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             CCCCCeEEecCCceeecCCCcEEEEEEEeeecC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       130 ~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      +..+|.+...+..+.+.+|+++.|.|.+.+.|. ++++|+|++..+....+... ..+  .+|.|.++..+|+|.|+|.+
T Consensus         3 P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~-~~~--~~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA-GMG--RRLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             SSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEE-EES--SEEEECSCCGGGCEEEEEES
T ss_pred             CCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEe-cCC--CEEEECCCChhcCEEEEEEE
Confidence            456788888888889999999999999988665 58999999988866544332 222  36999999999999999999


Q ss_pred             EeCCc
Q psy14060        209 ENRGG  213 (283)
Q Consensus       209 ~n~~g  213 (283)
                      .|..+
T Consensus        80 ~n~~~   84 (93)
T d1n26a1          80 AGRPA   84 (93)
T ss_dssp             SSSCS
T ss_pred             CCccc
Confidence            87653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=88.50  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CCeEEecCCc-eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEE---Ee-C--------CEEEEEEcCCCCC
Q psy14060        133 PPVFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH---TF-S--------TKSILIMRQVFME  199 (283)
Q Consensus       133 ~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~---~~-~--------~~~~l~i~~~~~~  199 (283)
                      +|.+...... ..+..|+++.|.|.+.|.|.|.+.|++++..+.........   .. .        ..+.|.|.++..+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            3556654433 45778999999999999999999999999988654332111   11 0        1357999999999


Q ss_pred             CCE-EEEEEEEeCCceeEEEEEEE
Q psy14060        200 DSG-VFAVIAENRGGKAKCSANLV  222 (283)
Q Consensus       200 d~G-~Y~C~a~n~~g~~~~~~~l~  222 (283)
                      |.| .|+|.|.|..|.......|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999987776654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.39  E-value=1.6e-12  Score=84.78  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             ecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      .......+.+|++++|.|.+.+. |.+.+.|||++..+..        ......|.|.++..+|+|.|.|.|.|..|...
T Consensus         5 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2           5 LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             EECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             EeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEE
Confidence            34455678899999999999754 5668999999987642        12334699999999999999999999988754


Q ss_pred             -EEEEEEEEe
Q psy14060        217 -CSANLVVEE  225 (283)
Q Consensus       217 -~~~~l~v~~  225 (283)
                       ..+.|.|..
T Consensus        77 S~~v~l~V~~   86 (88)
T d2fcba2          77 SKPVTITVQA   86 (88)
T ss_dssp             CCCEEEEECC
T ss_pred             eeeEEEEEeC
Confidence             346677653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.39  E-value=9.4e-13  Score=86.06  Aligned_cols=81  Identities=10%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             EecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      ++.+....+.+|++++|.|.+.+ .|.+.+.|||||..+...      .  ....|.|.++..+|+|.|+|.|.|..+..
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~--~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H--HNSDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E--ECCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------c--cccccEECccceeccceEEEEEEeCCCCe
Confidence            34455567889999999999874 455689999999876421      1  12358999999999999999999998875


Q ss_pred             E-EEEEEEEEe
Q psy14060        216 K-CSANLVVEE  225 (283)
Q Consensus       216 ~-~~~~l~v~~  225 (283)
                      . ..+.|.|.+
T Consensus        78 ~S~~v~itV~E   88 (89)
T d1fnla2          78 SSETVNITITQ   88 (89)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EEeeEEEEEEe
Confidence            4 346777764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=2e-13  Score=92.45  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=61.5

Q ss_pred             CceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060        141 QPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS  218 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  218 (283)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+......++.......+|.|.++..+|+|.|+|.|.|..|.....
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            45789999999999997 6889999999999877654333323333334469999999999999999999988876544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-14  Score=96.88  Aligned_cols=91  Identities=21%  Similarity=0.319  Sum_probs=67.1

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEE-------EEeCCEEEEEEcCCCCCCCEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQI-------HTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ||.+.....+..+..|+.+.|.|.+ .|.|.+.+.|+|++..+........       ........|.|.++..+|.|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4444444445678899999999998 5789999999999988754332111       1112234689999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEE
Q psy14060        205 AVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       205 ~C~a~n~~g~~~~~~~l~v  223 (283)
                      +|.|.|..|....++.+.|
T Consensus        82 ~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEECSSSCCEECCCBCC
T ss_pred             EEEEEECCCceEEEEEEEE
Confidence            9999999998877655444

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-12  Score=84.89  Aligned_cols=80  Identities=9%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             ecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..+....+.+|++++|.|.+.+. |...+.|||+|..+....        ....|.|.+++.+|+|.|+|.|.|..+...
T Consensus         5 lq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2           5 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence            34455678899999999999765 445899999999876432        223599999999999999999999887654


Q ss_pred             -EEEEEEEEe
Q psy14060        217 -CSANLVVEE  225 (283)
Q Consensus       217 -~~~~l~v~~  225 (283)
                       ..+.|.|.+
T Consensus        77 S~~v~i~V~~   86 (89)
T d1f2qa2          77 SEPLNITVIK   86 (89)
T ss_dssp             CCCEEEEEEC
T ss_pred             eeeEEEEEEe
Confidence             346788875

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.7e-12  Score=86.26  Aligned_cols=89  Identities=12%  Similarity=0.198  Sum_probs=65.9

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC----------CCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS----------SPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      |.+........+.+|+++.|.|.+.|.|.|.+.|++++.....          .........  ..+|.|.++..+|.|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--SSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--TTEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec--CCEEEEeECCccCCEE
Confidence            4555666778899999999999999999999999986433210          000001111  1269999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEEE
Q psy14060        204 FAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      |.|.+.|..|.......+.|.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999988777666554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-13  Score=91.32  Aligned_cols=88  Identities=14%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC----------eEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD----------FQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~----------~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      +.+........+.+|+++.|.|.+.|.|.|.+.|++++..+.....          ......  ..+|.|.++..+|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--PTGITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--TTEEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec--CceEEEecccccceee
Confidence            3344445567789999999999999999999999997644321100          000111  1369999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEE
Q psy14060        204 FAVIAENRGGKAKCSANLVV  223 (283)
Q Consensus       204 Y~C~a~n~~g~~~~~~~l~v  223 (283)
                      |.|.+.|..|.....+.+.|
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEEETTSSCEECCEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEE
Confidence            99999999998877666554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-12  Score=87.90  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             CceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        141 QPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      .......|+.+.|.|.+. +.|.+++.|+|++..+..  ....++...+  .+|.|.++..+|+|.|+|.+.|..|....
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            345677899999999885 568899999999865532  2233333333  36999999999999999999999999999


Q ss_pred             EEEEEEEec
Q psy14060        218 SANLVVEEK  226 (283)
Q Consensus       218 ~~~l~v~~~  226 (283)
                      ++.|.|...
T Consensus        88 ~~~L~V~~~   96 (101)
T d1iray1          88 KISAKFVEN   96 (101)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            999999864

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.5e-13  Score=92.87  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=75.0

Q ss_pred             cCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCCEecCCC--CCeEEEE--eC--CEEEEEEcCCCCCC
Q psy14060        128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSS--PDFQIHT--FS--TKSILIMRQVFMED  200 (283)
Q Consensus       128 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~~~~~--~~~~~~~--~~--~~~~l~i~~~~~~d  200 (283)
                      +.+..||.+. .+....+..|+.+.|.|.+.+. |.+.+.|++++..+...  .++.+..  ..  ..+.|.|.++..+|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            4566788765 4566778899999999999986 45689999999887653  2343322  11  13579999999999


Q ss_pred             -CEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        201 -SGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       201 -~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                       +|.|+|.|.|..|.....+.|.|..
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             6999999999999999888887764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.6e-12  Score=84.08  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             eeecCCCcEEEEE------EEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        143 CRAFEQDQARFEV------EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       143 ~~~~~g~~v~l~C------~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      +.+..|....|.|      .+.+.|.|.+.|++++..+...........+   .|.|.++..+|+|.|+|.|.|..+..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCE
Confidence            5678899999999      5678899999999999998765443333222   59999999999999999999977643

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-12  Score=84.47  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN  220 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  220 (283)
                      ...+.+|+++.|.|.+.| |.|.+.|++++..+.... ++.+...   ..|.|.++..+|+|.|+|.|.|..+.......
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~---~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGR---KNLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTT---TCEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeeccee---eEEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            467889999999999988 789999999998876532 3332222   25999999999999999999999887655444


Q ss_pred             EE
Q psy14060        221 LV  222 (283)
Q Consensus       221 l~  222 (283)
                      +.
T Consensus        82 l~   83 (92)
T d1olza1          82 VA   83 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=79.53  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      .+|.+...+....+.+|++++|.|.+.+.|.+. +.|++++..+...          ..+|.|.++..+|+|.|+|.+.|
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccC
Confidence            357777778888999999999999999988775 5678888776542          23599999999999999999987


Q ss_pred             CCce
Q psy14060        211 RGGK  214 (283)
Q Consensus       211 ~~g~  214 (283)
                      ...+
T Consensus        74 s~~S   77 (84)
T d1fnla1          74 STLS   77 (84)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            6543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.2e-12  Score=81.14  Aligned_cols=79  Identities=18%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+....+.+|++++|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|.|.|.|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCC
Confidence            46677777778899999999999999988775 56788888776432          35999999999999999999876


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .++..  +.|.|
T Consensus        71 ~~S~~--v~l~V   80 (82)
T d1f2qa1          71 NESEP--VYLEV   80 (82)
T ss_dssp             SCCCC--EEEEE
T ss_pred             CCccc--EEEEE
Confidence            54432  44444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7e-12  Score=84.14  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=68.3

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEee-ecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA  208 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  208 (283)
                      .|+.+...+.+..+..|+.++|.|.+.| .|.+  .+.|++++..+.....   ......+.|.|.....+|.|.|+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEE
Confidence            3666777777778999999999999986 4544  6899999988753211   11122457999999999999999999


Q ss_pred             EeCCceeEEEEEEEEE
Q psy14060        209 ENRGGKAKCSANLVVE  224 (283)
Q Consensus       209 ~n~~g~~~~~~~l~v~  224 (283)
                      .|..|.......+.+.
T Consensus        80 ~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          80 ELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEECGGGTSCEEEEEC
T ss_pred             EeCCCCccCeEeeeEc
Confidence            9999887666666654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.22  E-value=6.3e-12  Score=81.34  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+....          ..|.|.++..+|+|.|.|.+.|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCC
Confidence            4566677777889999999999999888765 688999999886532          24888999999999999999876


Q ss_pred             Cce
Q psy14060        212 GGK  214 (283)
Q Consensus       212 ~g~  214 (283)
                      .++
T Consensus        74 ~~S   76 (85)
T d2fcba1          74 SLS   76 (85)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.18  E-value=2.6e-11  Score=80.52  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             Cceeeec-CCeeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         50 PSASGVH-GKEIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        50 p~~~~~~-~~~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      |.|...+ ...+.+|+.+.|.|.+.|.|.  +.     +.+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            4444332 234778899999999999983  33     455566677777777889999999999999999999999988


Q ss_pred             e
Q psy14060        122 L  122 (283)
Q Consensus       122 ~  122 (283)
                      .
T Consensus        82 ~   82 (97)
T d1koaa1          82 T   82 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.9e-11  Score=79.77  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|...       ..+....++.+........|.|.+++.+|+|.|+|.+.|..|.
T Consensus        11 ~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   81 (101)
T d2cqva1          11 KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS   81 (101)
T ss_dssp             EEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             EEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE
Confidence            477889999999999998433       3445567888887778889999999999999999999999884

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=80.62  Aligned_cols=75  Identities=15%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEccCccc--eEEee--------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKGDKEI--VRKIT--------ATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i--~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .|.|.......+.+|+.+.|.|.+.|.|..  ..+..        ......+........|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~f~~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   81 (96)
T d2c9aa1           2 TPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT   81 (96)
T ss_dssp             SCEECCCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEE
T ss_pred             cCeecccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEe
Confidence            356654444468889999999999998732  21111        11122223333457899999999999999999999


Q ss_pred             cceee
Q psy14060        119 YYALS  123 (283)
Q Consensus       119 ~~~~~  123 (283)
                      ..|..
T Consensus        82 ~~G~~   86 (96)
T d2c9aa1          82 EGGVG   86 (96)
T ss_dssp             TTEEE
T ss_pred             CCCeE
Confidence            99853

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=74.83  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=48.7

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|++++|.|.+.|.|... .|..........    ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----~~~l~i~~v~~~DsG~Y~C~a~N~~g~   70 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----GKTLSVSQLELQDSGTWTCTVLQNQKK   70 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeecccceee----eeeeeeeecccccccEEEEEEEeCCCE
Confidence            488899999999999999554 666655554432    346899999999999999999999884

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.06  E-value=1.2e-10  Score=76.60  Aligned_cols=65  Identities=9%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             eeeecCcEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|++++|.|.+.|.|... .      .+....++.+...+....|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 ~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   84 (93)
T d1wiua_          13 KIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED   84 (93)
T ss_dssp             EECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEE
Confidence            467788999999999998433 2      3344566777777788999999999999999999999999853

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.04  E-value=4.8e-10  Score=74.92  Aligned_cols=74  Identities=9%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             CCceeeecCC-eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         49 EPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHK-GKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        49 ~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .|.|...+.+ .+.+|+.+.|.|.+.|.|...       ..+..+.++.+... .+...|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            4555433322 466788999999999988433       45566677777653 45789999999999999999999999


Q ss_pred             cee
Q psy14060        120 YAL  122 (283)
Q Consensus       120 ~~~  122 (283)
                      .|.
T Consensus        88 ~G~   90 (102)
T d1fhga_          88 LGE   90 (102)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            984

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.2e-11  Score=81.36  Aligned_cols=86  Identities=9%  Similarity=-0.076  Sum_probs=58.6

Q ss_pred             ecCCceeecCCCcEEEEEEEee-e--cCCEEEEEeCCEecCCCCCeEEE--EeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDG-D--PLPTIKWFREDFPITSSPDFQIH--TFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g-~--p~~~~~W~k~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..+.+..+..|+.++|.|.+.| .  |.+.++||+++..+.........  .....+.|.+.....+|.|.|+|.|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3455567889999999999986 3  44589999999987532111110  11123457777777788889999999988


Q ss_pred             ceeEEEEEEEE
Q psy14060        213 GKAKCSANLVV  223 (283)
Q Consensus       213 g~~~~~~~l~v  223 (283)
                      +.......+.+
T Consensus        87 ~~~~~~~~~~~   97 (106)
T d1zxqa1          87 MSRGGNIFHKH   97 (106)
T ss_dssp             GGGTCCEEEEE
T ss_pred             CCCCCeeEecc
Confidence            76544444443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.03  E-value=4.6e-10  Score=72.77  Aligned_cols=62  Identities=13%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             eeeecCcEEEEEEEccCc-cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .|.+|+.++|.|.+.+.+ ... .+...+...  ........|.|.+++.+|+|.|.|.|.|..+.
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~--~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~   74 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSK--KFSRSDPNFSIPQANHSHSGDYHCTGNIGYTL   74 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEE--EEESSCCEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeecccc--cccccccccccCccCHHHCCeEEEEEEeCCCC
Confidence            477899999999997654 333 555444333  33334567999999999999999999998874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.01  E-value=6.2e-10  Score=73.78  Aligned_cols=65  Identities=9%  Similarity=0.062  Sum_probs=51.2

Q ss_pred             eeeecCcEEEEEEEccCccce-------EEeecCCCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.|.|...       ..+..+.+... ...++...|.|.++..+|+|.|+|.+.|..|..
T Consensus        15 ~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   87 (98)
T d1g1ca_          15 TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET   87 (98)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEE
Confidence            477788999999999998433       44555555443 445678899999999999999999999999853

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=2.2e-10  Score=75.67  Aligned_cols=83  Identities=12%  Similarity=0.085  Sum_probs=57.2

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +|.+.. ....+.+|++++|.|.+.+.+ .+.     +.+....+..+...  ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus         5 ~P~i~~-~~~~v~~g~~v~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~--~~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2           5 QPFLQV-TNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CCCEEC-SCSEECTTSCEEEEECCCCSSCEEEEEETTEECCCCTTEEEETT--TTEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             CCeEEc-CceEEeCCCeEEEEEccCCCCCCEEEEEeeeecccccceeccCC--ceEEEEeccchhhceEEEEEEEeCCCC
Confidence            344443 333478899999999998765 333     45566666666543  347999999999999999999998774


Q ss_pred             ee--eeccCCCCCC
Q psy14060        123 SD--LSEQKPAKPP  134 (283)
Q Consensus       123 ~~--~~~~~~~~~p  134 (283)
                      ..  ...+.+..+|
T Consensus        82 ~~S~~~~L~V~~~P   95 (96)
T d1l6za2          82 RRSNSIKLDIIFDP   95 (96)
T ss_dssp             EECCCCEEEECCSC
T ss_pred             eEEEeEEEEEEcCC
Confidence            32  3344444444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.98  E-value=5.4e-11  Score=80.82  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             eeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCC-------CCeEEEEeCCEEEEEEcCCCCCCCE---EEEEEEEeC
Q psy14060        143 CRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSS-------PDFQIHTFSTKSILIMRQVFMEDSG---VFAVIAENR  211 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~  211 (283)
                      .++.+|+++.|.|.+ .|.|.|.+.|+|++..+...       .++..   ....+|.|.+++..|+|   .|.|.|.|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA---GPDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE---CTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc---ccccccEEeeeEeeccCCceEEEEEEEeC
Confidence            456789999999997 89999999999987655321       11222   22235888888887765   899999999


Q ss_pred             CceeEEEEEEE
Q psy14060        212 GGKAKCSANLV  222 (283)
Q Consensus       212 ~g~~~~~~~l~  222 (283)
                      .|.......+.
T Consensus        89 ~g~~~~~~~~~   99 (111)
T d1biha2          89 AVDEEVVLVEY   99 (111)
T ss_dssp             TCSSCEEEEEE
T ss_pred             CCCceEEEEEE
Confidence            99876654433

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.95  E-value=2.6e-10  Score=74.53  Aligned_cols=64  Identities=8%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             eeeecCcEEEEEEEccCccce-EE------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RK------ITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|... .|      +....++.+........|.|.+++.+|+|.|.|.+.|..|.
T Consensus        10 ~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_          10 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             ECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            366788999999999998332 33      34456677777778899999999999999999999999884

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.95  E-value=1.5e-10  Score=75.65  Aligned_cols=65  Identities=8%  Similarity=0.009  Sum_probs=47.2

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|... .|.................|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 ~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1cs6a3          16 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD   81 (91)
T ss_dssp             EEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEE
Confidence            366788999999999999543 55543322211112234579999999999999999999999853

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.7e-09  Score=70.97  Aligned_cols=65  Identities=8%  Similarity=0.027  Sum_probs=50.7

Q ss_pred             eeeecCcEEEEEEEccCccce--EEee------------cCCCEEEEEcCCEEEEEEccCC-CCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV--RKIT------------ATETTEMEHKGKIQERVVDASE-LDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~--~~~~------------~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|..+  .|..            ...++.+...+....|.|.++. .+|+|.|+|.|.|..|..
T Consensus        13 ~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~   92 (101)
T d3b5ha1          13 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD   92 (101)
T ss_dssp             EECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE
T ss_pred             EECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEE
Confidence            366788999999999998332  2321            2345677777788999999998 479999999999999854

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.5e-10  Score=72.99  Aligned_cols=63  Identities=8%  Similarity=-0.016  Sum_probs=45.5

Q ss_pred             CeeeecCcEEEEEEEccCc-cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         58 KEIHTAKSQQVQKEKKGDK-EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~-~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ..|.+|+.++|.|.+.+.+ ... .+...+....  .......|.|.+++.+|+|.|+|.+.|..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~--~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~   74 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK--YWYENHNISITNATVEDSGTYYCTGKVWQLD   74 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC--SCCCSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccc--cccccceEEEeeeeeecCcEEEEEEEeCCCC
Confidence            4588899999999998765 322 4444332221  2223457899999999999999999998764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.7e-09  Score=69.29  Aligned_cols=63  Identities=10%  Similarity=-0.041  Sum_probs=47.0

Q ss_pred             eeecCcEEEEEEEc-cCccce-EEeecCC-CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKK-GDKEIV-RKITATE-TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~-g~~~i~-~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+++.|.|.+. |.|..+ .|..... ............|.|.+++.+|+|.|+|.|.|..+.
T Consensus        15 ~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1          15 VALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             EETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            55789999999985 777444 4443322 222334456789999999999999999999999874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.1e-09  Score=69.90  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecCCC---EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITATET---TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+.+.|.|.+.|.|... .|......   ...........|.|.+++.+|+|.|+|.|.|..+.
T Consensus        13 ~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   79 (90)
T d1vcaa2          13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (90)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCE
Confidence            45688999999999999444 34322211   12234456789999999999999999999999984

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.6e-10  Score=77.55  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=50.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EE-----------------------------------eecCCCEEEEEcCCEEEEEEc
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RK-----------------------------------ITATETTEMEHKGKIQERVVD  102 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~-----------------------------------~~~~~~~~~~~~~~~~~L~i~  102 (283)
                      .|.+|+.++|.|.+.|.|... .|                                   +....++.+........|.|.
T Consensus        20 ~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   99 (130)
T d1gxea_          20 VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVE   99 (130)
T ss_dssp             EESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECS
T ss_pred             EEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEEC
Confidence            466789999999999988332 11                                   112345676777788999999


Q ss_pred             cCCCCCCeEEEEEEEecceee
Q psy14060        103 ASELDDDGYYAITERKYYALS  123 (283)
Q Consensus       103 ~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      ++..+|+|.|+|.|.|..|..
T Consensus       100 ~v~~~D~G~Y~C~a~N~~G~~  120 (130)
T d1gxea_         100 GAEKEDEGVYTVTVKNPVGED  120 (130)
T ss_dssp             CCCTTTCEEEEEEEECSSCEE
T ss_pred             cCChhcCEEEEEEEEECCCEE
Confidence            999999999999999999853

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-10  Score=74.78  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=56.3

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCC----------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS----------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      ......|++|+|.|.+. .|.+.+.|++++..+..          ....++.......+|.|.++..+|+|.|.|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35678899999999875 48889999998876521          11112222333457999999999999999999887


Q ss_pred             CceeEEEEEEEE
Q psy14060        212 GGKAKCSANLVV  223 (283)
Q Consensus       212 ~g~~~~~~~l~v  223 (283)
                      .+...  +.|.|
T Consensus        83 ~~t~~--~~l~V   92 (93)
T d1ccza1          83 TDTMK--FFLYV   92 (93)
T ss_dssp             CSCEE--EEEEE
T ss_pred             CcEEE--EEEEE
Confidence            66544  44443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.8e-09  Score=69.25  Aligned_cols=65  Identities=11%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeecC--CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITAT--ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.+.+ .+.     ..+..+  .++.+...++.+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        11 ~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~a   83 (90)
T d1x44a1          11 TAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSA   83 (90)
T ss_dssp             EEETTEEEEEEEECSSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEEEEE
T ss_pred             EEeCCCcEEEEEEECCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecceEEE
Confidence            577899999999996433 333     334333  34677777889999999999999999999998875543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4e-09  Score=69.13  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=49.6

Q ss_pred             eeeecCcEEEEEEEccCc-cce-----EEeec-CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-----RKITA-TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .|.+|+.+.|.|.+.+.+ .+.     ..+.. ..++.+...++.+.|.|.++..+|+|.|+|.|.|..+..
T Consensus        17 ~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~s~   88 (94)
T d1pd6a_          17 QVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCST   88 (94)
T ss_dssp             EEETTSCEEEEEECSSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEEECC
T ss_pred             EECcCCeEEEEEEECCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeEEEEE
Confidence            477889999999996533 343     33433 345677777789999999999999999999998865543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.8e-08  Score=69.72  Aligned_cols=85  Identities=19%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             CceeecCCCcEEEEEEEeee---cCCEEEEEeCCEec-----------C----CC--CCeEEEEe---CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFPI-----------T----SS--PDFQIHTF---STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~---p~~~~~W~k~~~~~-----------~----~~--~~~~~~~~---~~~~~l~i~~~~  197 (283)
                      ..+.+..|++++|.|.+...   ....+.|++.+...           .    ..  .+..+...   ....+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            34778899999999998642   23568999864321           0    00  12222211   225689999999


Q ss_pred             CCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      .+|+|.|+|.+.+..+.......|.|.+
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            9999999999999988888888888875

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=7.1e-09  Score=68.32  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             eeeecCcEEEEEEEccCcc-ce-EEee--------cCCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV-RKIT--------ATETTEME-HKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~--------~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|+ .. .|..        ...++.+. .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1          11 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             EEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             EEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCc
Confidence            4778999999999999873 22 3332        23344443 3456788999999999999999999999874

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.84  E-value=2.5e-09  Score=69.33  Aligned_cols=62  Identities=8%  Similarity=-0.008  Sum_probs=46.4

Q ss_pred             eeeecCcEEEEEEEccCc-cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .|.+|+.++|.|.+.+.+ ... .+...+.......  ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--HNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--cccccEECccceeccceEEEEEEeCCCC
Confidence            477899999999997554 333 5665554444333  3347889999999999999999998774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5e-09  Score=68.21  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=47.3

Q ss_pred             eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEH--KGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.|.|.  +.     ..+....+..+..  ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus         7 ~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           7 TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             EEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             EEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            3677889999999999983  32     3344344433332  233568999999999999999999998774

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.83  E-value=5.7e-10  Score=72.49  Aligned_cols=64  Identities=14%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             eeeecCcEEEEEEEccCc--cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDK--EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~--~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+++.|.|.+. .|  .+.     ..+..+.++.+...+..+.|.|.+++.+|+|.|+|.+.|..+..
T Consensus        12 ~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~sa   82 (89)
T d1tiua_          12 EVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSAA   82 (89)
T ss_dssp             EEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCCE
T ss_pred             EEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEEE
Confidence            578899999999985 45  333     56677788899888899999999999999999999998876544

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.82  E-value=4.6e-09  Score=68.06  Aligned_cols=59  Identities=12%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             eeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      +.+|+.+.|.|.+.|.|.  +.     ..+. ..++.+..    ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus        15 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~-~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4          15 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             ECTTSCEEEECEEEEESCCCCEEEETTEECC-SSSEEEET----TEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             EeCCCeEEEEEEEEEeCCCEEEEEeCCccCc-cccEEEee----eeEEECCCChhhCEEEEEEEEECCCEE
Confidence            556889999999999983  32     3332 33444432    249999999999999999999999853

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.81  E-value=3.9e-09  Score=68.37  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             CeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCCC
Q psy14060        237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKR  281 (283)
Q Consensus       237 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~~  281 (283)
                      |.|+..+.+..+..|+++.|.|.+.|.|.|.++|++||+++....
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~   46 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN   46 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCS
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccc
Confidence            678888999999999999999999999999999999999997654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.6e-09  Score=69.08  Aligned_cols=65  Identities=5%  Similarity=-0.147  Sum_probs=47.8

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCE----EEEEcCCEEEEEEccCCCCCCe-EEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETT----EMEHKGKIQERVVDASELDDDG-YYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~----~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.+.|.|.+.|.|... .|...+...    ..........|.|.+++.+|.| .|+|.|.|..|..
T Consensus        13 ~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~   83 (92)
T d2ifga1          13 SVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA   83 (92)
T ss_dssp             CCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC
T ss_pred             EEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEE
Confidence            577899999999999998433 333322111    1122345788999999999999 7999999999953

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.5e-09  Score=69.85  Aligned_cols=62  Identities=8%  Similarity=0.027  Sum_probs=44.3

Q ss_pred             eeeecCcEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.+.|.|.+.|.|.+. .      .+........... ....|.|.+++.+|+|.|+|.|.|..+
T Consensus        12 ~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2          12 EFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             ECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             EEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee-eeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            477888999999999999443 2      3332322222221 123699999999999999999999765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-09  Score=73.94  Aligned_cols=64  Identities=6%  Similarity=0.007  Sum_probs=46.5

Q ss_pred             eeeecCcEEEEEEEccCcc---ce-EEeec---------CCCEEEEE------cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKE---IV-RKITA---------TETTEMEH------KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~---i~-~~~~~---------~~~~~~~~------~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+.+|+.++|.|.+.|.|.   .. .|+..         ..++.+..      ......|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   90 (113)
T d2dava1          11 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK   90 (113)
T ss_dssp             EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECS
T ss_pred             EEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeC
Confidence            4778999999999999872   22 44432         22233221      123567999999999999999999999


Q ss_pred             cee
Q psy14060        120 YAL  122 (283)
Q Consensus       120 ~~~  122 (283)
                      .|.
T Consensus        91 ~G~   93 (113)
T d2dava1          91 DKF   93 (113)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            884

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.5e-09  Score=71.58  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             eeeecCcEEEEEEEccCcc---ce-EEeecC---------CCEEEEE------cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKE---IV-RKITAT---------ETTEMEH------KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~---i~-~~~~~~---------~~~~~~~------~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+..|++++|.|.+.|.|.   .. .|....         .++....      ......|.|.+++.+|+|.|+|.+.|.
T Consensus        15 ~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   94 (110)
T d2avga1          15 EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTK   94 (110)
T ss_dssp             EEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEET
T ss_pred             EEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEEC
Confidence            4677899999999999882   22 444321         2222221      113567999999999999999999999


Q ss_pred             ceee
Q psy14060        120 YALS  123 (283)
Q Consensus       120 ~~~~  123 (283)
                      .|..
T Consensus        95 ~G~~   98 (110)
T d2avga1          95 DKFD   98 (110)
T ss_dssp             TEEE
T ss_pred             CCeE
Confidence            9843

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.75  E-value=4.4e-09  Score=67.35  Aligned_cols=69  Identities=12%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             CCCceeeec-CCeeeecCcEEEEEEEccCccce--EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         48 PEPSASGVH-GKEIHTAKSQQVQKEKKGDKEIV--RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        48 ~~p~~~~~~-~~~v~~g~~v~l~C~~~g~~~i~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ++|.+...+ ...|.+|+.++|.|.+.|.+...  .+...+.  .+..  ....|.|.+++.+|+|.|+|.+.|..
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNES--LISS--QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTE--EEES--SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeece--eeee--cceeeEecCCcccCCEEEEEEccCCC
Confidence            345554444 34688999999999999988332  3333222  2222  34579999999999999999987653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=67.44  Aligned_cols=64  Identities=11%  Similarity=-0.025  Sum_probs=45.8

Q ss_pred             eeeecCcEEEEEEEccCcc-ce-EEeecCC---------CEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV-RKITATE---------TTEMEHK--GKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~~~~---------~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+.|.|+ .. .|...+.         .......  .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 ~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   90 (104)
T d2aw2a1          14 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL   90 (104)
T ss_dssp             EEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence            4778999999999999873 23 3333221         1112221  23557999999999999999999999884

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.73  E-value=8.3e-09  Score=69.49  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=45.9

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCC------------CEEE-------EEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATE------------TTEM-------EHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~------------~~~~-------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .+.+|+++.|.|.+.|.|... .|+....            ....       ........|.|.+++.+|+|.|+|.|.|
T Consensus        16 tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   95 (109)
T d2fdbp2          16 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN   95 (109)
T ss_dssp             EECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEE
Confidence            477788999999999999443 3332110            0110       1112357899999999999999999999


Q ss_pred             cceee
Q psy14060        119 YYALS  123 (283)
Q Consensus       119 ~~~~~  123 (283)
                      ..|..
T Consensus        96 ~~G~~  100 (109)
T d2fdbp2          96 SIGIS  100 (109)
T ss_dssp             SSCEE
T ss_pred             CCCEE
Confidence            98843

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.4e-08  Score=64.98  Aligned_cols=44  Identities=7%  Similarity=0.113  Sum_probs=40.1

Q ss_pred             CeEEecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecCC
Q psy14060        237 PSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDVK  280 (283)
Q Consensus       237 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~~  280 (283)
                      |.|...|.+..+.+|+.+.|.|.+.|.|.| +|+|+|||+.+...
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~   46 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP   46 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC
Confidence            678888889999999999999999999988 89999999998654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.71  E-value=1.8e-09  Score=71.31  Aligned_cols=63  Identities=11%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             eeecCcEEEEEEEccCccce-E------EeecCCCE-EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-R------KITATETT-EMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +..|+.+.|.|.+.|.|... .      .+....++ .........+|.|.+++.+|+|.|+|.|.|..|.
T Consensus        17 v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (97)
T d3dara1          17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS   87 (97)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             ECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE
Confidence            56788999999999998433 2      33322221 1122223468999999999999999999999985

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=6.1e-09  Score=69.06  Aligned_cols=63  Identities=11%  Similarity=0.063  Sum_probs=44.6

Q ss_pred             eeecCcEEEEEEEccCccce-EEeec------CC--CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITA------TE--TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+.+.|.|.+.|.|... .|...      ..  ............|.|.+++.+|+|.|+|.|.|..|.
T Consensus        17 ~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   88 (100)
T d1qz1a3          17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE   88 (100)
T ss_dssp             TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCE
Confidence            34688999999999998433 33321      11  111122234568999999999999999999999884

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.69  E-value=4.7e-09  Score=69.20  Aligned_cols=64  Identities=5%  Similarity=0.003  Sum_probs=46.1

Q ss_pred             eeeecCcEEEEEEEccCccce-E------EeecCC--CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-R------KITATE--TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+++.|.|.+.|.|... .      .+....  ++..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 ~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          14 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             EEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             EEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            366788999999999998432 2      232222  222222334457999999999999999999999874

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.1e-08  Score=69.04  Aligned_cols=65  Identities=11%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CeeeecCcEEEEEEEc-cCccce-EEeecC------CC--------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         58 KEIHTAKSQQVQKEKK-GDKEIV-RKITAT------ET--------TEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~-g~~~i~-~~~~~~------~~--------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ..+.+|+.+.|.|.+. |.|... +|...+      ..        ...........|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3588999999999985 777433 333211      11        1111222345789999999999999999999987


Q ss_pred             e
Q psy14060        122 L  122 (283)
Q Consensus       122 ~  122 (283)
                      .
T Consensus        92 ~   92 (110)
T d1f97a2          92 T   92 (110)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.68  E-value=2.3e-09  Score=70.32  Aligned_cols=63  Identities=10%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             eeeecCcEEEEEEEccCcc-ce-EEeec------CC-CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKE-IV-RKITA------TE-TTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~~------~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+.|.|. .. .|...      .. ....  .....+|.|.++..+|+|.|+|.|.|..|..
T Consensus        13 ~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   84 (94)
T d1biha1          13 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL--RKDEGSLVFLRPQASDEGHYQCFAETPAGVA   84 (94)
T ss_dssp             EEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE--CTTSCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee--cccceEEEEeccChhcCeEEEEEEEeCCCEE
Confidence            3667889999999999873 22 33332      22 2222  2234579999999999999999999999854

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=9.5e-08  Score=63.67  Aligned_cols=75  Identities=12%  Similarity=0.211  Sum_probs=55.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.|||.  +...            ....++.....+....|.|.++..+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            34556778899999999999887655567999974  2211            122456666666778999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+.+
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999998654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.5e-09  Score=68.20  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             Cceeeec-CCeeeecCcEEEEEEEccCccce--EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         50 PSASGVH-GKEIHTAKSQQVQKEKKGDKEIV--RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        50 p~~~~~~-~~~v~~g~~v~l~C~~~g~~~i~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      |.+...+ +..|.+|+.++|.|.+.|.+...  .+...+..  +..  ....|.|.+++.+|+|.|.|.+.|..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL--SEE--TNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEE--CSC--CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeee--eec--ccceeEECCCChhhCCcEEEEecCCC
Confidence            4444433 23588899999999999998432  34333221  111  34569999999999999999987653

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=1.2e-07  Score=63.10  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E-e-c----------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F-P-I----------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~-~-~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.||+..  . . +          ....++.....+....|.|.++..+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            445567788999999999998876555569999842  1 1 0          112356666667788999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+.+
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.8e-08  Score=63.88  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             ecCcEEEEEEEccCccce-------EEeecCCCEEEEE--c---CCEEEEEEccCCCCCCeEEEEEEEeccee-eeeecc
Q psy14060         62 TAKSQQVQKEKKGDKEIV-------RKITATETTEMEH--K---GKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQ  128 (283)
Q Consensus        62 ~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~--~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~  128 (283)
                      .++.+.+.|.+.|.|...       ..+..+.+..+..  .   .....|.|.+++.+|+|.|+|.|.|..|. .....+
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            345688999999999433       3444444443321  1   12457999999999999999999999994 445566


Q ss_pred             CCCCCCe
Q psy14060        129 KPAKPPV  135 (283)
Q Consensus       129 ~~~~~p~  135 (283)
                      .+..+|.
T Consensus        95 ~V~~~P~  101 (103)
T d1wwbx_          95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            6666664

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=1.5e-07  Score=62.78  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.|||..  ..+            ....++..........|.|.++..+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            345567788999999999999876556679999742  111            112456666677788999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997643

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-08  Score=66.59  Aligned_cols=59  Identities=12%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             eeecCcEEEEEEEccCc-cce-EEeec------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV-RKITA------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~-~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +.+|+.++|.|.+.|.+ .++ .|...      ..+. ....+  .+|.|.+++.+|+|.|+|.+.|...
T Consensus        18 ~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~-~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMG--RRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEE-EEEES--SEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             EeCCCcEEEEEEeecCCCCceEEEEEccccccceeeE-EecCC--CEEEECCCChhcCEEEEEEECCccc
Confidence            45588999999999865 333 33322      2222 22222  3699999999999999999987654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=4.2e-08  Score=64.53  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=54.4

Q ss_pred             eeecCCCcEEEEEEEe-eecC-CEEEEEeCCEecCC----------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        143 CRAFEQDQARFEVEFD-GDPL-PTIKWFREDFPITS----------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~-g~p~-~~~~W~k~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +....|++|+|.|... .... ..|.|++++..+..          ..+..+.   ...+|.|.+++.+|+|.|+|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC---TTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC---CCccEEEeCCCHHHCEEEEEEEEe
Confidence            4567799999999642 2222 46999998876531          1111111   223699999999999999999999


Q ss_pred             CCceeE--EEEEEEEE
Q psy14060        211 RGGKAK--CSANLVVE  224 (283)
Q Consensus       211 ~~g~~~--~~~~l~v~  224 (283)
                      ..|...  ..+.|.|.
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            988764  44555554

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=1.7e-07  Score=62.40  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.|||.  +..+            ....++.....+....|.|.++..+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            34556778899999999999987656667999973  2211            112345555566677999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1c5cl1          84 ADYYCLQYA   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEecCc
Confidence            999998654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.60  E-value=1.5e-08  Score=64.90  Aligned_cols=69  Identities=10%  Similarity=-0.006  Sum_probs=47.4

Q ss_pred             CCCceeeecC-CeeeecCcEEEEEEEccCcc-ce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         48 PEPSASGVHG-KEIHTAKSQQVQKEKKGDKE-IV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        48 ~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~-i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ++|.+...+. ..|.+|+.|+|.|.+.+.+. .. .+...+...    ......|.|.+++.+|+|.|+|.+.|..
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~----~~~~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLI----PTHTQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEEC----TTCCSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccc----cccccceEEeeccccCCcEEEEECCCCc
Confidence            3555554433 46889999999999999873 22 444332211    1234568899999999999999987754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=2.4e-07  Score=61.82  Aligned_cols=75  Identities=9%  Similarity=0.118  Sum_probs=56.4

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++|+|.|..+......+.||+.  +..   +         ....++..........|.|.++..+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            34556778899999999999987655567999974  211   1         113456666667788999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1kcvl1          84 ADYYCGQSY   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEecC
Confidence            999998643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.59  E-value=1.9e-07  Score=62.26  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060        135 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMED  200 (283)
Q Consensus       135 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  200 (283)
                      .+...|..+.+.+|++++|.|.........+.||+..  ..   +         ....++.....+....|.|.++..+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            3456677888999999999999876556788999842  11   1         11235666666777899999999999


Q ss_pred             CEEEEEEEEe
Q psy14060        201 SGVFAVIAEN  210 (283)
Q Consensus       201 ~G~Y~C~a~n  210 (283)
                      +|.|+|.+.+
T Consensus        83 sA~YyCa~~~   92 (107)
T d1tjgl1          83 FATYYCQQLH   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CceEEEEECc
Confidence            9999997643

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=8.9e-09  Score=66.65  Aligned_cols=60  Identities=10%  Similarity=0.047  Sum_probs=43.1

Q ss_pred             eeeecCcEEEEEEEc-cCccce-EEeecC-----CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKK-GDKEIV-RKITAT-----ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~~i~-~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+. |.|... .|....     .+... .   ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~-~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_          13 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-F---NGILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             EECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE-E---TTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe-e---ceEEEEecCCcccCEEEEEEEEECCCE
Confidence            366788999999997 566333 443322     12221 1   236999999999999999999999884

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.57  E-value=2.6e-07  Score=61.48  Aligned_cols=75  Identities=11%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC-----Eec---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED-----FPI---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ++..|..+.+.+|++++|.|...+.....+.||+..     ..+         ....++.....+....|.|.++..+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            345677889999999999999876555678999852     111         112356666677778999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=1.2e-07  Score=63.31  Aligned_cols=74  Identities=9%  Similarity=0.101  Sum_probs=54.6

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G  202 (283)
                      ...|..+.+.+|++++|.|..++.....+.|||..  ...            ....++.....+....|.|.++..+|+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            44566788999999999999876555579999842  111            1123555555566678999999999999


Q ss_pred             EEEEEEEe
Q psy14060        203 VFAVIAEN  210 (283)
Q Consensus       203 ~Y~C~a~n  210 (283)
                      .|+|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1ospl1          85 TYFCQQYW   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecc
Confidence            99998653

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-07  Score=63.81  Aligned_cols=83  Identities=16%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             ceeecCCCcEEEEEEEeeecC----CEEEEEeCCEec----------------C---C--CCCeEEEEe---CCEEEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPL----PTIKWFREDFPI----------------T---S--SPDFQIHTF---STKSILIM  193 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~----~~~~W~k~~~~~----------------~---~--~~~~~~~~~---~~~~~l~i  193 (283)
                      .+.+..|+++.|.|.....+.    ..+.|++.....                .   .  ..+..+...   ....+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            357789999999999875432    358898732110                0   0  012222111   12347999


Q ss_pred             cCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060        194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVE  224 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  224 (283)
                      .++..+|+|.|.|.+.+..+.......|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999988877777777664

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.53  E-value=6.4e-08  Score=63.54  Aligned_cols=47  Identities=13%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             CCCeEEecCCceEEcCC---CeEEEEEEEEeeCCCeeEEeeCCEEecCCC
Q psy14060        235 VPPSFLTTISSAVINVG---QLARFDAKISATKPLDVYWLKVSSLSDVKR  281 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~l~~~~  281 (283)
                      .+|.|...|.+..+.+|   +.++|.|.+.|.|.|.++|++||+.+....
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~   52 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP   52 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCST
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCC
Confidence            46888888888877665   789999999999999999999999987653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=3.1e-07  Score=61.18  Aligned_cols=75  Identities=13%  Similarity=0.133  Sum_probs=55.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ++..+..+.+.+|++++|.|.........+.|||.  +..   +         ....++.....+....|.|.++.++|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            34556667889999999999986555567999974  211   1         012356666666778999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1mexl1          84 AEYFCQQYN   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eeEEEeECC
Confidence            999997643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=4.9e-07  Score=60.37  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.||+..  .   .+         ....++.....+....|.|.++..+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            345567788899999999999876555669999832  1   11         012356666667788999999999999


Q ss_pred             EEEEEEEE
Q psy14060        202 GVFAVIAE  209 (283)
Q Consensus       202 G~Y~C~a~  209 (283)
                      |.|+|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.8e-07  Score=60.66  Aligned_cols=70  Identities=10%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             cEEEEEEEccCccce-------EEeecCCCEEEE--EcC--CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCC
Q psy14060         65 SQQVQKEKKGDKEIV-------RKITATETTEME--HKG--KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAK  132 (283)
Q Consensus        65 ~v~l~C~~~g~~~i~-------~~~~~~~~~~~~--~~~--~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~  132 (283)
                      ...|.|.+.|.|...       ..+....+....  ..+  ....|.|.+++.+|+|.|+|.|.|..|. .....+.+..
T Consensus        19 ~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred             EEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEe
Confidence            466889999999433       334444444432  222  2467999999999999999999999994 3344555555


Q ss_pred             CC
Q psy14060        133 PP  134 (283)
Q Consensus       133 ~p  134 (283)
                      +|
T Consensus        99 ~P  100 (105)
T d1wwca_          99 EP  100 (105)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=4.5e-07  Score=60.38  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c--------C-CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I--------T-SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~--------~-~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|..+......+.||+..  ..   +        . ...++.....+....|.|.++..+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            345567788999999999999876556678999742  11   1        0 12356666667778999999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=7.7e-07  Score=60.78  Aligned_cols=78  Identities=14%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe------c----C--------C----CCCeEEE-EeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP------I----T--------S----SPDFQIH-TFST  187 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~------~----~--------~----~~~~~~~-~~~~  187 (283)
                      +|.+...|..+.+.+|++++|.|.+.+.....+.|||.  +..      +    .        .    ..++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            46677788889999999999999998777778999972  211      1    0        0    0122222 2334


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        188 KSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       188 ~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      ..+|.|.++..+|+|.|+|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            56899999999999999998753

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=1.4e-08  Score=67.89  Aligned_cols=64  Identities=9%  Similarity=-0.021  Sum_probs=44.4

Q ss_pred             eeeecCcEEEEEEE-ccCccce-EEeecCCC------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEK-KGDKEIV-RKITATET------TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~-~g~~~i~-~~~~~~~~------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.+.|.|.+ .|.|.+. .|...+..      .+.........|.|.+++.+|+|.|+|.|.|..+.
T Consensus        15 ~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          15 KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             EEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence            47779999999997 6777433 34433221      11112223447999999999999999999998774

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.6e-09  Score=67.60  Aligned_cols=56  Identities=11%  Similarity=-0.067  Sum_probs=41.7

Q ss_pred             eeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      +.+|+.+.|.|.+.|.|... .|+..+....  .     .+.+.+++.+|+|.|.|.|.|..|.
T Consensus        16 ~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~--~-----~~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          16 WPENSQQTPMCQAWGNPLPELKCLKDGTFPL--P-----IGESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             EETTCEECCCCCCEEESCCEEEEEETTTEEC--C-----TTSCEECCGGGCEEEEEEEEETTEE
T ss_pred             EeCCCEEEEEEEEeEcCccEEEEEEeeccce--e-----eeeeeccccCCCCEEEEEEEcCCCE
Confidence            66688999999999999444 5665443221  1     1245678899999999999999984

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=6.2e-07  Score=59.73  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c--------C-CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I--------T-SSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~--------~-~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|.........+.||+..  ..   +        . ....+.....+....|.|.++..+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            345567788999999999999876555679999742  11   1        0 12234455556667899999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|...+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.50  E-value=2.4e-07  Score=62.50  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---CC------CCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---TS------SPDFQIHT--FSTKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~~------~~~~~~~~--~~~~~~l~i~~~~~~d  200 (283)
                      ...|..+.+.+|+.++|.|...+.....+.|||..  ..   +   ..      ..++....  ......|.|.++..+|
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            44566788899999999999877555678999842  11   0   01      11222222  2346689999999999


Q ss_pred             CEEEEEEEEeCC
Q psy14060        201 SGVFAVIAENRG  212 (283)
Q Consensus       201 ~G~Y~C~a~n~~  212 (283)
                      +|.|+|.+....
T Consensus        84 sg~YyCa~~~~~   95 (113)
T d2bnqd1          84 SATYLCAVRPTS   95 (113)
T ss_dssp             CEEEEEEEEESS
T ss_pred             CcEEeEeEecCC
Confidence            999999987543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.6e-07  Score=61.21  Aligned_cols=64  Identities=6%  Similarity=-0.021  Sum_probs=45.2

Q ss_pred             eeeecCcEEEEEEEccC-c--cce-EEeecCCCEEEEE---cCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGD-K--EIV-RKITATETTEMEH---KGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~-~--~i~-~~~~~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+.++|.|.+.|. |  .++ .|...........   ......|.|..+..+|.|.|+|.|.|..+.
T Consensus        15 ~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~   85 (103)
T d1iama1          15 WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRP   85 (103)
T ss_dssp             EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             eEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCC
Confidence            47789999999999974 4  333 3444333222221   123568999999999999999999998774

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.1e-07  Score=61.33  Aligned_cols=69  Identities=10%  Similarity=0.024  Sum_probs=47.5

Q ss_pred             EEEEEEEccCccce-------EEeecCCCEEEEEcC-------CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC
Q psy14060         66 QQVQKEKKGDKEIV-------RKITATETTEMEHKG-------KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP  130 (283)
Q Consensus        66 v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~  130 (283)
                      ..+.|.+.|.|...       +.+..+.+.......       ....|.|.++..+|+|.|+|.|.|..|. .....+.+
T Consensus        18 ~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (107)
T ss_dssp             EEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEE
Confidence            44667999998433       344444444433211       2467999999999999999999999994 44555666


Q ss_pred             CCCC
Q psy14060        131 AKPP  134 (283)
Q Consensus       131 ~~~p  134 (283)
                      ..+|
T Consensus        98 ~~~P  101 (107)
T d1he7a_          98 MDNP  101 (107)
T ss_dssp             CSCT
T ss_pred             EcCC
Confidence            6666

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.48  E-value=7.4e-07  Score=59.56  Aligned_cols=75  Identities=12%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|...+.....+.||+..  .   .+         ....++.....+....|.|.++..+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            345567788999999999999877555678899842  1   11         112356666667778899999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=6.8e-07  Score=59.40  Aligned_cols=70  Identities=9%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      +..+.+.+|++++|.|..++.....+.|||..  .   .+         ....++.....+....|.|.++..+|+|.|+
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            34578899999999999976555679999742  1   11         1123566666777789999999999999999


Q ss_pred             EEEE
Q psy14060        206 VIAE  209 (283)
Q Consensus       206 C~a~  209 (283)
                      |...
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.9e-08  Score=64.02  Aligned_cols=65  Identities=11%  Similarity=-0.054  Sum_probs=44.2

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecCCCEEEE--E--------cC----CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITATETTEME--H--------KG----KIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~--~--------~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+++.|.|.+.|.|... .|..........  .        ..    ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus        15 ~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~   94 (105)
T d1nbqa1          15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNS   94 (105)
T ss_dssp             CEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSC
T ss_pred             EEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCE
Confidence            367788999999999998433 333222111110  0        00    01369999999999999999999998843

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.1e-07  Score=60.54  Aligned_cols=76  Identities=9%  Similarity=0.086  Sum_probs=55.5

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCE--e------c------------CCCCCeEEEEeCCEEEEEEc
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDF--P------I------------TSSPDFQIHTFSTKSILIMR  194 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~--~------~------------~~~~~~~~~~~~~~~~l~i~  194 (283)
                      +...|....+..|++++|.|.+.+.. ...+.|||...  .      +            ....++..........|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            45567778899999999999986533 34689998321  0      0            01234555666667889999


Q ss_pred             CCCCCCCEEEEEEEEeC
Q psy14060        195 QVFMEDSGVFAVIAENR  211 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n~  211 (283)
                      ++..+|+|.|+|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=2.5e-07  Score=61.66  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      +...|..+.+.+|++++|.|..+......+.||+..  ..+            ....++.....+....|.|.++..+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            345567788999999999999876556679999742  110            112344455566678999999999999


Q ss_pred             EEEEEEEE
Q psy14060        202 GVFAVIAE  209 (283)
Q Consensus       202 G~Y~C~a~  209 (283)
                      |.|+|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6e-08  Score=65.82  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             CeeeecCcEEEEEEEccCc-cc-eEEeec--------CCCEEEEE----cCCEEEEEEccCCCCC-CeEEEEEEEeccee
Q psy14060         58 KEIHTAKSQQVQKEKKGDK-EI-VRKITA--------TETTEMEH----KGKIQERVVDASELDD-DGYYAITERKYYAL  122 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~-~i-~~~~~~--------~~~~~~~~----~~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~  122 (283)
                      ..+.+|+.+.|.|.+.|.+ .. ..|...        ..++.+..    .+....|.|.++..+| +|.|+|.|.|..|.
T Consensus        16 ~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~   95 (115)
T d2crya1          16 QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS   95 (115)
T ss_dssp             CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE
T ss_pred             EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCe
Confidence            3467788999999999865 22 223221        12233221    1123579999999999 69999999999995


Q ss_pred             -eeeeccCCC
Q psy14060        123 -SDLSEQKPA  131 (283)
Q Consensus       123 -~~~~~~~~~  131 (283)
                       .....+.+.
T Consensus        96 ~~~~~~L~V~  105 (115)
T d2crya1          96 DTEIIRLKEQ  105 (115)
T ss_dssp             EEEEECCCCS
T ss_pred             EEEEEEEEEE
Confidence             334445554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3e-08  Score=64.46  Aligned_cols=61  Identities=7%  Similarity=0.066  Sum_probs=43.0

Q ss_pred             eeeecCcEEEEEEEccCc-cceE-----Eee-cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         59 EIHTAKSQQVQKEKKGDK-EIVR-----KIT-ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-~i~~-----~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      .+.+|+++.|.|.+.|.+ .+..     .+. ...++.+.   ....|.|.+++++|+|.|+|.|.|..+.
T Consensus         8 ~~~~G~~~~l~C~~~g~~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           8 FFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLM---GRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEETTSCEEECCCCSCTTCEEEEEESSSBCCCCSSSBCCT---TTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             eEeCCCEEEEEEEeeccCCceeeecCcccceeeeeeeecc---eeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            477899999999999865 3331     111 12232222   1236999999999999999999998763

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2e-06  Score=57.87  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeC--CEe---c----------CCCCCeEEEEeC--CEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRE--DFP---I----------TSSPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~--~~~---~----------~~~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ++..|..+.+.+|++++|.|...+. ....+.|||.  +..   +          ....++.+....  ....|.|.++.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            3456777889999999999998653 3467899983  211   1          112345554432  34679999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy14060        198 MEDSGVFAVIAENR  211 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~  211 (283)
                      .+|+|.|+|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999987654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=1.9e-07  Score=61.80  Aligned_cols=60  Identities=8%  Similarity=0.007  Sum_probs=42.6

Q ss_pred             eeeecCcEEEEEEEccCccce-EEeecC------------------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         59 EIHTAKSQQVQKEKKGDKEIV-RKITAT------------------ETTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+.+|+++.|.|.+.|.|... .|....                  .+...    ...+|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1          12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF----SSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             EEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE----ETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             EEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe----cCCEEEEeECCccCCEEEEEEEEEC
Confidence            467788999999999988332 222111                  11111    1236999999999999999999999


Q ss_pred             cee
Q psy14060        120 YAL  122 (283)
Q Consensus       120 ~~~  122 (283)
                      .+.
T Consensus        88 ~g~   90 (102)
T d1f97a1          88 GGQ   90 (102)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            874

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.7e-07  Score=60.04  Aligned_cols=78  Identities=8%  Similarity=-0.076  Sum_probs=54.0

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +|.+...+.. .+..|++|+|.|.... +...+.|+|++........ .....+....+.|.+++..|+|.|.|...+..
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            5666666654 5789999999998643 5678999999864321000 00001234579999999999999999987765


Q ss_pred             c
Q psy14060        213 G  213 (283)
Q Consensus       213 g  213 (283)
                      .
T Consensus        81 ~   81 (95)
T d1olla1          81 L   81 (95)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.42  E-value=4.8e-07  Score=59.85  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ..+.+.+|++++|.|.........+.|||..  ..+            ....++..........|.|.++..+|+|.|+|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            3577889999999998866555678999742  111            01234556666777899999999999999999


Q ss_pred             EEEeC
Q psy14060        207 IAENR  211 (283)
Q Consensus       207 ~a~n~  211 (283)
                      .+.+.
T Consensus        86 A~~~~   90 (103)
T d8faba1          86 QAWDN   90 (103)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            87643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.42  E-value=6.4e-07  Score=59.79  Aligned_cols=73  Identities=12%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             EecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ...|..+.+.+|++++|.|..... ....+.||+..  .   .+         ....++.....+....|.|.++..+|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            445667789999999999998653 34568899842  2   11         012345666667778999999999999


Q ss_pred             EEEEEEEE
Q psy14060        202 GVFAVIAE  209 (283)
Q Consensus       202 G~Y~C~a~  209 (283)
                      |.|+|.+.
T Consensus        85 a~YyCa~~   92 (108)
T d2fx7l1          85 AVYYCQQY   92 (108)
T ss_dssp             SEEEEEEC
T ss_pred             EEEeeecC
Confidence            99999864

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.41  E-value=1.3e-06  Score=57.75  Aligned_cols=73  Identities=11%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  201 (283)
                      ++..|..+.+.+|++++|.|..+. ....+.||+..  ..   +         ....++.....+....|.|.++..+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            345677788999999999998754 34457899742  11   0         012345555666778999999999999


Q ss_pred             EEEEEEEE
Q psy14060        202 GVFAVIAE  209 (283)
Q Consensus       202 G~Y~C~a~  209 (283)
                      |.|+|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-07  Score=61.40  Aligned_cols=80  Identities=6%  Similarity=-0.056  Sum_probs=53.5

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+.. .+..|++|+|.|.... +...+.|+|++......... ..........+.|.+++.+|+|.|.|...+.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            5666666654 5888999999998653 56789999876421110000 0011123346899999999999999999887


Q ss_pred             Cce
Q psy14060        212 GGK  214 (283)
Q Consensus       212 ~g~  214 (283)
                      ...
T Consensus        85 ~~~   87 (99)
T d1ucta1          85 HYR   87 (99)
T ss_dssp             TTE
T ss_pred             Ccc
Confidence            653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.2e-08  Score=66.69  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             eeeecCcEEEEEEEc-cCccce-EEeecCCCE------EE-------EEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         59 EIHTAKSQQVQKEKK-GDKEIV-RKITATETT------EM-------EHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~-g~~~i~-~~~~~~~~~------~~-------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      .+.+|+.++|.|.+. |.|... .|...+...      ..       ........|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 ~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~   92 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP   92 (104)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             EEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCce
Confidence            478899999999984 787433 333222111      10       111123578999999999999999999998843

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.39  E-value=3.1e-06  Score=56.56  Aligned_cols=74  Identities=11%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c----C---------CCCCeEEEEeCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I----T---------SSPDFQIHTFSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~----~---------~~~~~~~~~~~~~~~l~i~~~~  197 (283)
                      +...|..+.+.+|++++|.|..++ ....+.|||.  |..   +    .         ...............|.|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            345567788999999999998765 4568999984  211   0    0         1112233444567789999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|+|.|+|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.39  E-value=2.3e-06  Score=57.32  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeee--cCCEEEEEeCC------EecCCCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED------FPITSSPDFQIHTF--STKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~------~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ...|..+.+..|++++|.|..++.  ....+.||+..      ..+....++.....  .....|.|.++..+|+|.|+|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            345667788899999999998653  34679999831      22333344544433  245689999999999999999


Q ss_pred             EEEeC
Q psy14060        207 IAENR  211 (283)
Q Consensus       207 ~a~n~  211 (283)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            87543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.36  E-value=3.5e-06  Score=56.50  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             EecCCceeecCCCcEEEEEEEeee--cCCEEEEEeC--CE----ecCCCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRE--DF----PITSSPDFQIHTF--STKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~--~~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ...|..+.+.+|++++|.|..++.  ....+.||+.  +.    .+....++.....  .....|.|.++..+|+|.|+|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            455677888999999999999753  3457999973  22    2233345544443  335689999999999999999


Q ss_pred             EEEe
Q psy14060        207 IAEN  210 (283)
Q Consensus       207 ~a~n  210 (283)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.36  E-value=1.8e-06  Score=57.81  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-c---CCEEEEEeC--CEec------------CCCCCeEEEEeCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-P---LPTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-p---~~~~~W~k~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~  197 (283)
                      +...|..+.+.+|++|+|.|..+.. .   ...+.||+.  +...            ....++.....+....|.|.++.
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            3455677889999999999988642 1   234899984  2111            01245666666677899999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|+|.|+|.+.+
T Consensus        84 ~~DsA~YyCa~~~   96 (111)
T d2gsia1          84 EEDAATYYCSHIR   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCceEEEEECC
Confidence            9999999997654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.8e-06  Score=56.01  Aligned_cols=74  Identities=8%  Similarity=-0.094  Sum_probs=49.7

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCEEE-----EEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEM-----EHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      ++|.+...++..|..|+.|+|.|+.............+.....     ...+....+.|.+++..|+|.|+|...+...
T Consensus         3 PKPsLsa~P~~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           3 PKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCEEEeeCCCcccCCCcEEEEEecCCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            5788888888888899999999987544322211111111110     0123467899999999999999998766543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.35  E-value=4.4e-07  Score=61.36  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=52.0

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---------CCCCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHT--FSTKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d  200 (283)
                      ...+..+.+.+|++++|.|.........+.|||..  ..   +         ....++.+..  ......|.|.++..+|
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            44566678899999999999877666789999842  11   1         0012233321  2234569999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|.+...
T Consensus        85 sg~YyCa~~~~   95 (115)
T d1lp9e1          85 SALYYCALFLA   95 (115)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CccceEEEEcC
Confidence            99999987654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.35  E-value=3.2e-07  Score=61.96  Aligned_cols=75  Identities=16%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee----c--C-C-----CCCeEEE--EeCCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP----I--T-S-----SPDFQIH--TFSTKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~----~--~-~-----~~~~~~~--~~~~~~~l~i~~~~~~d  200 (283)
                      ...|..+.+.+|++++|.|.........+.||+..  ..    +  . .     ..++...  ......+|.|.++..+|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            44567788999999999999877566789999742  11    0  0 0     1122222  12345689999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|.+...
T Consensus        84 sg~Y~Ca~~~~   94 (114)
T d2cdea1          84 SASYICVVSDR   94 (114)
T ss_dssp             CSEEEEEEECS
T ss_pred             CcccceeeecC
Confidence            99999998764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.8e-06  Score=55.70  Aligned_cols=70  Identities=10%  Similarity=0.032  Sum_probs=48.8

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeec-C-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITA-T-ETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~-~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      ++|.++..++..|..|++|+|.|+............. . .............+.|.+++..|+|.|+|...
T Consensus         3 pkPsLsa~P~~~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCCcccCCCcEEEEECCCCCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            5788888888889999999999987544422211111 1 11222233467889999999999999999643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=1.2e-06  Score=58.76  Aligned_cols=74  Identities=12%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec---C---C------CCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI---T---S------SPDFQIHT--FSTKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~---~---~------~~~~~~~~--~~~~~~l~i~~~~~~d  200 (283)
                      ...+..+.+.+|++++|.|..++.....+.||+.  +...   .   .      ..++....  ......|.|.++..+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3445667789999999999987655667899984  2111   0   0      12233322  2446789999999999


Q ss_pred             CEEEEEEEEe
Q psy14060        201 SGVFAVIAEN  210 (283)
Q Consensus       201 ~G~Y~C~a~n  210 (283)
                      +|.|+|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.31  E-value=5.3e-07  Score=60.46  Aligned_cols=73  Identities=16%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--EecC------C------CCCeEEEE--eCCEEEEEEcCCCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPIT------S------SPDFQIHT--FSTKSILIMRQVFMEDS  201 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~~------~------~~~~~~~~--~~~~~~l~i~~~~~~d~  201 (283)
                      ..+..+.+.+|++++|.|..+......+.||+..  ....      .      ..+.....  ......|.|.++..+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            3456678899999999999875444568999842  1110      0      01222221  23356899999999999


Q ss_pred             EEEEEEEEe
Q psy14060        202 GVFAVIAEN  210 (283)
Q Consensus       202 G~Y~C~a~n  210 (283)
                      |.|+|.+..
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998764

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.4e-07  Score=60.66  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=56.4

Q ss_pred             cCCceeecCCCcEEEEEEEeee---cCCEEEEEeCCEe-----c---------CCCCCeEEEE--eCCEEEEEEcCCCCC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFP-----I---------TSSPDFQIHT--FSTKSILIMRQVFME  199 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~---p~~~~~W~k~~~~-----~---------~~~~~~~~~~--~~~~~~l~i~~~~~~  199 (283)
                      .|..+.+.+|++++|.|.....   ....+.|+|....     +         ....++.+..  .....+|.|.++..+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            4566788899999999987532   2345789874311     1         0112333333  234568999999999


Q ss_pred             CCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060        200 DSGVFAVIAENRGGKAKCSANLVVEE  225 (283)
Q Consensus       200 d~G~Y~C~a~n~~g~~~~~~~l~v~~  225 (283)
                      |+|.|+|.+............|.|.+
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999998865443344456676664

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.30  E-value=1.4e-06  Score=58.35  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=51.8

Q ss_pred             EecCCceeecCCCcEEEEEEEeee----cCCEEEEEeC--CEe---c---------CCCCCeEEEEeCCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD----PLPTIKWFRE--DFP---I---------TSSPDFQIHTFSTKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~----p~~~~~W~k~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~  198 (283)
                      ...|..+.+.+|++++|.|.....    ....+.||+.  +..   +         ....++.....+....|.|.++..
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            445677788999999999987532    1234899984  221   1         012244455555677999999999


Q ss_pred             CCCEEEEEEEEe
Q psy14060        199 EDSGVFAVIAEN  210 (283)
Q Consensus       199 ~d~G~Y~C~a~n  210 (283)
                      +|+|.|+|.+.+
T Consensus        85 ~Dsa~YyCa~~~   96 (111)
T d1j05a_          85 DDVATYYCQQTN   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCccEEEeecC
Confidence            999999998654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.30  E-value=1.9e-06  Score=58.41  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c-----------C---CCCCeEEEEe-CCEEEEEEcC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I-----------T---SSPDFQIHTF-STKSILIMRQ  195 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~-----------~---~~~~~~~~~~-~~~~~l~i~~  195 (283)
                      +...+..+.+.+|++++|.|...+.....+.|||.  +..   +           .   ...++..... .....|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            44556677899999999999987766678999984  211   1           0   1123444332 3456899999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      +..+|+|.|+|.+..
T Consensus        84 ~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          84 AHPEDSGFYVCSALA   98 (118)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cccccCceEEEEEec
Confidence            999999999999764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.5e-07  Score=62.78  Aligned_cols=77  Identities=14%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEecC---------C----------CCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT---------S----------SPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~---------~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ..+.+|++|.|.|.........+.|+|......         .          ..+..+.   ...+|.|.+++.+|+|.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~---~ngSL~I~~v~~~D~G~   85 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMGV   85 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC---TTSCEEECSCCGGGCEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc---ccccEEEcCCCchhCEE
Confidence            346799999999974333356899998543211         0          0122221   12369999999999999


Q ss_pred             EEEEEEeCCce-eEEEEEEE
Q psy14060        204 FAVIAENRGGK-AKCSANLV  222 (283)
Q Consensus       204 Y~C~a~n~~g~-~~~~~~l~  222 (283)
                      |+|.+.+..+. ......|.
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             EEEEEEETTEEECCCCEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEE
Confidence            99999877643 33344443

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=4.8e-07  Score=61.18  Aligned_cols=75  Identities=13%  Similarity=0.163  Sum_probs=50.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---cC---CC-------C--CeEEEEeCCEEEEEEcCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---IT---SS-------P--DFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~~---~~-------~--~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      ...+..+.+.+|++++|.|.........+.|||.  +..   +.   ..       .  +...........|.|.++..+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            3445567899999999999987655677899973  211   10   00       0  111111223457999999999


Q ss_pred             CCEEEEEEEEeC
Q psy14060        200 DSGVFAVIAENR  211 (283)
Q Consensus       200 d~G~Y~C~a~n~  211 (283)
                      |+|.|+|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=1e-06  Score=59.68  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--E---ec---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI---------TSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ..|..+.+.+|++++|.|...+.-...+.||+..  .   .+         ....++..........|.|.++..+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            3455677889999999998766444568999842  1   11         11234555555666789999999999999


Q ss_pred             EEEEEEe
Q psy14060        204 FAVIAEN  210 (283)
Q Consensus       204 Y~C~a~n  210 (283)
                      |+|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.29  E-value=1.4e-06  Score=58.02  Aligned_cols=71  Identities=10%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ..+.+.+|++++|.|.........+.||+..  ..   +         ....++.....+....|.|.++..+|+|.|+|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            3577889999999998765445678999742  11   1         01234556666778899999999999999999


Q ss_pred             EEEeC
Q psy14060        207 IAENR  211 (283)
Q Consensus       207 ~a~n~  211 (283)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            88654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.28  E-value=2.5e-06  Score=57.24  Aligned_cols=73  Identities=8%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             CCceeecCCCcEEEEEEEeeec---CCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP---LPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p---~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G  202 (283)
                      |..+.+.+|++++|.|...+..   ...+.|||..  ..   +         ....++..........|.|.++..+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4567889999999999987532   2458999842  11   1         1123455666667789999999999999


Q ss_pred             EEEEEEEeCC
Q psy14060        203 VFAVIAENRG  212 (283)
Q Consensus       203 ~Y~C~a~n~~  212 (283)
                      .|+|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999876543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.28  E-value=8.9e-07  Score=59.27  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CCceeecCCCcEEEEEEEeee-cCCEEEEEeC--CEe---cC---------CCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD-PLPTIKWFRE--DFP---IT---------SSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      +..+.+.+|++++|.|..++. ....+.|||.  +..   +.         ...++..........|.|.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345788899999999987643 3446889984  211   10         01112222234567899999999999999


Q ss_pred             EEEEEeC
Q psy14060        205 AVIAENR  211 (283)
Q Consensus       205 ~C~a~n~  211 (283)
                      +|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.27  E-value=2.9e-06  Score=56.96  Aligned_cols=74  Identities=11%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee---cC---CEEEEEeC--CEec------------CCCCCeEEEEeCCEEEEEEcC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD---PL---PTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILIMRQ  195 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~---p~---~~~~W~k~--~~~~------------~~~~~~~~~~~~~~~~l~i~~  195 (283)
                      +...|..+.+.+|++++|.|..++.   ..   ..+.|||.  +..+            ....++.....+....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            3455677889999999999987642   11   24899984  2111            112355566667778999999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      +..+|+|.|+|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999864

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.27  E-value=2.7e-06  Score=57.02  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-----cCCEEEEEeCC--Ee----c--------CCCCCeEEEEeCCEEEEEEcCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-----PLPTIKWFRED--FP----I--------TSSPDFQIHTFSTKSILIMRQV  196 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~--~~----~--------~~~~~~~~~~~~~~~~l~i~~~  196 (283)
                      ++..+..+.+.+|++|+|.|..++.     ....+.||+..  ..    +        ....++.....+....|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            3445566788899999999998653     13468998742  11    1        0123455566667788999999


Q ss_pred             CCCCCEEEEEEE
Q psy14060        197 FMEDSGVFAVIA  208 (283)
Q Consensus       197 ~~~d~G~Y~C~a  208 (283)
                      ..+|+|.|+|..
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999964

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=3.8e-06  Score=55.91  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             CceeecCCCcEEEEEEEeeecC---CEEEEEeC--C-Ee--c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL---PTIKWFRE--D-FP--I---------TSSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~--~-~~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      ..+.+.+|++++|.|..++...   ..+.||+.  + .+  +         ....++.....+....|.|.++..+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            4577899999999999975322   23889873  2 11  1         11245666667778899999999999999


Q ss_pred             EEEEEEeC
Q psy14060        204 FAVIAENR  211 (283)
Q Consensus       204 Y~C~a~n~  211 (283)
                      |+|.....
T Consensus        88 YyCa~~~~   95 (110)
T d1oaql_          88 YFCALWYS   95 (110)
T ss_dssp             EEEEEEET
T ss_pred             EEEEcccC
Confidence            99987653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.6e-07  Score=59.06  Aligned_cols=75  Identities=16%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             CCCCceeeecCCeeeecCcEEEEEEEccCccceEEeec-CC------CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         47 VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITA-TE------TTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        47 ~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~-~~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      -++|.+...++..|..|++|+|.|.............. ..      .......+....+.|.+++.+|+|.|+|...+.
T Consensus         5 lpkPsLsa~P~~~V~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           5 FPMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             SCCCCEEESSCSEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEecCCCceeCCCeEEEEEcCCCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            35788888777778889999999987543321111111 11      111111224457899999999999999988776


Q ss_pred             ce
Q psy14060        120 YA  121 (283)
Q Consensus       120 ~~  121 (283)
                      ..
T Consensus        85 ~~   86 (99)
T d1ucta1          85 HY   86 (99)
T ss_dssp             TT
T ss_pred             Cc
Confidence            44

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=1.5e-06  Score=59.02  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             EecCCceeecCCCcEEEEEEEeee----cCCEEEEEeCC--E----ec---------C-C----CCCeEEEEe--CCEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD----PLPTIKWFRED--F----PI---------T-S----SPDFQIHTF--STKSI  190 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~----p~~~~~W~k~~--~----~~---------~-~----~~~~~~~~~--~~~~~  190 (283)
                      +..+....+..|++++|.|.....    ....+.|++..  .    .+         . .    ..++.+...  ....+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            445677889999999999987532    23478998632  1    00         0 0    012222111  12347


Q ss_pred             EEEcCCCCCCCEEEEEEEEeCCc--eeEEEEEEEEE
Q psy14060        191 LIMRQVFMEDSGVFAVIAENRGG--KAKCSANLVVE  224 (283)
Q Consensus       191 l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~  224 (283)
                      |.|.++..+|+|.|.|.+.+..+  .......|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999987543  23344555553

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.26  E-value=4e-06  Score=55.70  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=52.8

Q ss_pred             CCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      |..+.+.+|++++|.|.........+.||+.  +..   +         ....++..........|.|.++..+|+|.|+
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4567788999999999876544456889873  211   1         0123566666677789999999999999999


Q ss_pred             EEEEeC
Q psy14060        206 VIAENR  211 (283)
Q Consensus       206 C~a~n~  211 (283)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.26  E-value=3.3e-06  Score=56.61  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             ceeecCCCcEEEEEEEeeec--CCEEEEEeCCE--e---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDP--LPTIKWFREDF--P---I---------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~--~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      .+.+.+|++++|.|..++..  ...+.||+...  .   +         ....++..........|.|.++..+|++.|+
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            57788999999999987542  45789998531  1   1         0123455666677889999999999999999


Q ss_pred             EEEEeC
Q psy14060        206 VIAENR  211 (283)
Q Consensus       206 C~a~n~  211 (283)
                      |.+...
T Consensus        89 CA~~~~   94 (114)
T d2rhea_          89 CAAWND   94 (114)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            988653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.25  E-value=3e-06  Score=56.68  Aligned_cols=71  Identities=8%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             CceeecCCCcEEEEEEEeee--cCCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMEDSGVF  204 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  204 (283)
                      ..+.+.+|++++|.|..++.  ....+.||+..  ..   +         ....++.....+....|.|.++..+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            45788999999999988653  23469999741  11   1         012345666667778999999999999999


Q ss_pred             EEEEEeC
Q psy14060        205 AVIAENR  211 (283)
Q Consensus       205 ~C~a~n~  211 (283)
                      +|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.24  E-value=4.1e-06  Score=56.15  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-----cCCEEEEEeCC--Ee---c---------CCCCCeEEEEeCCEEEEEEcCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-----PLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQV  196 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~  196 (283)
                      +...|..+.+.+|++++|.|..++.     ....+.||+..  ..   +         ....++.....+....|.|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4455677889999999999998642     22468999742  11   1         1123455555667789999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      ..+|+|.|+|...+
T Consensus        85 ~~~DsavYyCa~~~   98 (113)
T d1n4xl_          85 EAEDLGIYYCFQGS   98 (113)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCEEEEEEECC
Confidence            99999999996543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=1.5e-06  Score=58.58  Aligned_cols=76  Identities=11%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             EecCCceeecCCCcEEEEEEEee-ecCCEEEEEeC--CEe---cC----C------CCCeEEEE--eCCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFRE--DFP---IT----S------SPDFQIHT--FSTKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~--~~~---~~----~------~~~~~~~~--~~~~~~l~i~~~~~  198 (283)
                      ...+..+.+.+|++|+|.|.... .....+.|||.  +..   +.    .      ..+.....  ......|.|.++..
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            34456678899999999998754 34457899983  211   10    0      01222222  23456899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy14060        199 EDSGVFAVIAENRG  212 (283)
Q Consensus       199 ~d~G~Y~C~a~n~~  212 (283)
                      +|+|.|+|.+....
T Consensus        84 ~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          84 VDSAVYFCALSGFY   97 (114)
T ss_dssp             GGCEEEEEEEECSB
T ss_pred             ccCCCceEeCCCCC
Confidence            99999999876543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=7.1e-07  Score=61.32  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=29.8

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCC
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPP  134 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p  134 (283)
                      +..+|.|.+++.+|+|.|.|.+.+..+. .....+.+..|+
T Consensus        79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             CeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            4789999999999999999999887663 223344444443

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=1.2e-06  Score=59.10  Aligned_cols=75  Identities=11%  Similarity=0.181  Sum_probs=51.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---CC------CCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---TS------SPDFQIHT--FSTKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~~------~~~~~~~~--~~~~~~l~i~~~~~~d  200 (283)
                      ...+..+.+.+|++++|.|..++ ....+.||+..  ..   +   ..      ..++.+..  ......|.|.++..+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            44566788999999999998765 34579999842  11   0   01      12222222  2345689999999999


Q ss_pred             CEEEEEEEEeCC
Q psy14060        201 SGVFAVIAENRG  212 (283)
Q Consensus       201 ~G~Y~C~a~n~~  212 (283)
                      +|.|+|.+....
T Consensus        83 sa~YyCa~~~~~   94 (115)
T d1ogad1          83 TGLYLCAGAGSQ   94 (115)
T ss_dssp             CEEEEEEEECTT
T ss_pred             eeeEcccccCCC
Confidence            999999886543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.22  E-value=4.6e-06  Score=55.78  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec-----CCEEEEEeC--CEe---c---------CCCCCeEEEEeCCEEEEEEcCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRE--DFP---I---------TSSPDFQIHTFSTKSILIMRQV  196 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p-----~~~~~W~k~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~  196 (283)
                      ++..|..+.+.+|++++|.|..++..     ...+.||+.  |..   +         ....++.....+....|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            44556778899999999999875422     235889974  211   1         1123555556667778999999


Q ss_pred             CCCCCEEEEEEE
Q psy14060        197 FMEDSGVFAVIA  208 (283)
Q Consensus       197 ~~~d~G~Y~C~a  208 (283)
                      ..+|+|.|+|..
T Consensus        84 ~~eDsAvYYC~~   95 (112)
T d1ncwl1          84 EAEDLGVYYCWQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcCEeEEEEc
Confidence            999999999954

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=6.5e-07  Score=60.52  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---CC-------CCCeEEEE--eCCEEEEEEcCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---TS-------SPDFQIHT--FSTKSILIMRQVFME  199 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~~-------~~~~~~~~--~~~~~~l~i~~~~~~  199 (283)
                      ...+..+.+.+|++++|.|..+......+.|||..  ..   +   ..       ..++....  ......|.|.++..+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            44566788999999999999876556789999832  11   1   00       01122221  122347999999999


Q ss_pred             CCEEEEEEEEeC
Q psy14060        200 DSGVFAVIAENR  211 (283)
Q Consensus       200 d~G~Y~C~a~n~  211 (283)
                      |+|.|+|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.21  E-value=2e-06  Score=58.03  Aligned_cols=73  Identities=19%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             EecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCC-----Eec------C-----------CCCCeEEEE--eCCEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED-----FPI------T-----------SSPDFQIHT--FSTKSIL  191 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~-----~~~------~-----------~~~~~~~~~--~~~~~~l  191 (283)
                      +..+..+.+.+|++++|.|.+.+. ....+.||+..     +.+      .           +..++....  ......|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            345677889999999999998763 45679999742     211      0           112222322  2234579


Q ss_pred             EEcCCCCCCCEEEEEEEE
Q psy14060        192 IMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       192 ~i~~~~~~d~G~Y~C~a~  209 (283)
                      .|.++..+|+|.|+|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999864

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.3e-06  Score=57.62  Aligned_cols=60  Identities=10%  Similarity=0.118  Sum_probs=43.3

Q ss_pred             eeeecCcEEEEE------EEccCc--cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQK------EKKGDK--EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C------~~~g~~--~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+...|.|      .+.|+|  .+.     +.+...........   ..|.|.+++.+|+|.|+|.|.|..+
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecC---CEEEEcccccccCcEEEEEEEECcC
Confidence            478899999999      567776  443     34443333332322   3699999999999999999998765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2e-06  Score=57.14  Aligned_cols=44  Identities=14%  Similarity=0.282  Sum_probs=35.9

Q ss_pred             CeEEecCCc-eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060        237 PSFLTTISS-AVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK  280 (283)
Q Consensus       237 p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~  280 (283)
                      |.++.+... ..+..|+++.|.|.+.|.|.|.+.|++||+.+...
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~   46 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED   46 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTT
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccc
Confidence            555554433 56788999999999999999999999999988654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.3e-07  Score=59.44  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=45.9

Q ss_pred             eeecCCCcEEEEEEEeeecCCEEEEEeCCEec--CC--------C----CCeEEEE---eCCEEEEEEcCCCCCCCEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--TS--------S----PDFQIHT---FSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--~~--------~----~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      ....+|++++|.|.........+.|++.....  ..        .    .++....   .....+|.|.++..+|+|.|+
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            35678999999999877666789999864321  00        0    0111100   112346999999999999999


Q ss_pred             EEEEe
Q psy14060        206 VIAEN  210 (283)
Q Consensus       206 C~a~n  210 (283)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99854

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=2.4e-06  Score=55.33  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCcEEEEEEEeeecCCEEEEEeCC--Ee---c---C-----CCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        148 QDQARFEVEFDGDPLPTIKWFRED--FP---I---T-----SSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       148 g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~-----~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      |++++|.|.........+.|||..  ..   +   .     ...++....  .....+|.|.++..+|+|.|+|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            689999999877667789999832  11   1   1     112333322  234568999999999999999987643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=3.4e-06  Score=56.51  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c----------C---CCCCeEEEE-eCCEEEEEEcCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I----------T---SSPDFQIHT-FSTKSILIMRQVFM  198 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~----------~---~~~~~~~~~-~~~~~~l~i~~~~~  198 (283)
                      ..|..+.+.+|++++|.|...+ ....+.|||..  ..   +          .   ...++.... ......|.|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            4456678899999999998643 45679999841  11   0          0   012222222 22346899999999


Q ss_pred             CCCEEEEEEEEe
Q psy14060        199 EDSGVFAVIAEN  210 (283)
Q Consensus       199 ~d~G~Y~C~a~n  210 (283)
                      +|+|.|+|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=2.2e-06  Score=57.63  Aligned_cols=75  Identities=20%  Similarity=0.348  Sum_probs=50.1

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec----C--CC----CCeEE---EEeCCEEEEEEcCCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI----T--SS----PDFQI---HTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~----~--~~----~~~~~---~~~~~~~~l~i~~~~~~d~  201 (283)
                      ...+..+.+.+|++++|.|..+. ....+.|||..  ..+    .  ..    .....   ........|.|.++..+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            44567788899999999999865 45679999842  111    0  00    00000   0112345799999999999


Q ss_pred             EEEEEEEEeCC
Q psy14060        202 GVFAVIAENRG  212 (283)
Q Consensus       202 G~Y~C~a~n~~  212 (283)
                      |.|+|.+....
T Consensus        84 a~YyCa~~~~~   94 (113)
T d1h5ba_          84 GTYFCAAEASS   94 (113)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEEecCCC
Confidence            99999986543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2e-05  Score=52.17  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCCE--e---c---------CCCCCeEEEE--eCCEEEEEEcCCCCCCCE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFREDF--P---I---------TSSPDFQIHT--FSTKSILIMRQVFMEDSG  202 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~--~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G  202 (283)
                      +.+...+|++++|.|......  ...+.|||...  .   +         ....++.+..  ......|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346788999999999875432  24678987421  1   1         0112343333  245678999999999999


Q ss_pred             EEEEEEEeCC
Q psy14060        203 VFAVIAENRG  212 (283)
Q Consensus       203 ~Y~C~a~n~~  212 (283)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.1e-07  Score=60.38  Aligned_cols=63  Identities=6%  Similarity=-0.037  Sum_probs=39.3

Q ss_pred             eeecCcEEEEEEEccCc-cce-----EEe----------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV-----RKI----------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~-----~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ..+|++|+|.|.+.... ++.     ..+          ....+.+........+|.|.+++++|+|.|.|.+.|..+.
T Consensus         7 ~~~G~sVtl~c~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t   85 (93)
T d1ccza1           7 GVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT   85 (93)
T ss_dssp             EETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSC
T ss_pred             EEECCCEEEEecCCCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcE
Confidence            44678899999765322 333     111          0111111122234568999999999999999998877553

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.14  E-value=1.6e-05  Score=53.80  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe---c---------CCCCCeEEEEe--CCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP---I---------TSSPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~---~---------~~~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ++..+..+.+.+|++++|.|..++..  ...+.|||.  +..   +         ....++.....  .....|.|.++.
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34455667889999999999997642  467999983  211   1         01134544432  356789999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy14060        198 MEDSGVFAVIAENR  211 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~  211 (283)
                      .+|+|.|+|.....
T Consensus        84 ~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          84 ERDEGSYYCACDTL   97 (120)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccCCceeecCcccC
Confidence            99999999987543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.14  E-value=2.3e-06  Score=57.74  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             EEecCCceeecCCCcEEEEEEEeee-cCCEEEEEeC--CEe---cC------------CCCCeEEEEe--CCEEEEEEcC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRE--DFP---IT------------SSPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~--~~~---~~------------~~~~~~~~~~--~~~~~l~i~~  195 (283)
                      +...+..+.+.+|++++|.|..++. ....+.|||.  +..   +.            ...++.+...  ....+|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445667788999999999988653 4567999972  211   10            1124444332  2346899999


Q ss_pred             CCCCCCEEEEEEEEeCC
Q psy14060        196 VFMEDSGVFAVIAENRG  212 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~  212 (283)
                      +..+|+|.|+|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999876543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=2.5e-06  Score=57.53  Aligned_cols=75  Identities=15%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             EecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCC--Ee----c----CC-----CCCeEEEE--eCCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFRED--FP----I----TS-----SPDFQIHT--FSTKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~--~~----~----~~-----~~~~~~~~--~~~~~~l~i~~~~~  198 (283)
                      ...+..+.+.+|++|+|.|.... .....+.|||..  ..    +    ..     ..++.+..  ......|.|.++..
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34456678999999999998754 345678999842  11    1    00     12334433  23456899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy14060        199 EDSGVFAVIAENR  211 (283)
Q Consensus       199 ~d~G~Y~C~a~n~  211 (283)
                      +|+|.|+|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=7.9e-06  Score=52.88  Aligned_cols=74  Identities=8%  Similarity=0.051  Sum_probs=53.1

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+. ..+..|++|+|.|.........+.|+|++......  .  ........+.|.+++.+|+|+|+|.....
T Consensus         5 kP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~--~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           5 KPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--E--cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            566666654 47899999999998643344579999998643221  1  12234567999999999999999987644

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=2.4e-06  Score=57.22  Aligned_cols=72  Identities=8%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Eec------------CCCCCeEEEE--eCCEEEEEEcCCCCCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI------------TSSPDFQIHT--FSTKSILIMRQVFMEDS  201 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~  201 (283)
                      |..+.+.+|++++|.|..++..  ...+.|||..  ..+            ....++....  ......|.|.++..+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4567899999999999987632  2458999842  111            0113344433  34577899999999999


Q ss_pred             EEEEEEEEeC
Q psy14060        202 GVFAVIAENR  211 (283)
Q Consensus       202 G~Y~C~a~n~  211 (283)
                      |.|+|...+.
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999987543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8.7e-06  Score=53.86  Aligned_cols=63  Identities=11%  Similarity=0.001  Sum_probs=40.8

Q ss_pred             eeeecCcEEEEEEEccC---ccce-EEeecCCCEEEEE--------cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKGD---KEIV-RKITATETTEMEH--------KGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~---~~i~-~~~~~~~~~~~~~--------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+.+|+.++|.|.+.|.   |.+. .|..++....-..        ......|.|.....+|.|.|+|.|.|..+
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            48889999999999873   3322 4444333222111        11245667776666777799999999876

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=6e-06  Score=55.37  Aligned_cols=73  Identities=8%  Similarity=0.108  Sum_probs=49.7

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec---------------CCCCCeEEEE-eCCEEEEEEcCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI---------------TSSPDFQIHT-FSTKSILIMRQVFME  199 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~---------------~~~~~~~~~~-~~~~~~l~i~~~~~~  199 (283)
                      ..|..+.+.+|++++|.|...+ ....+.|||.  +...               ....++.... ......|.|.++..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            3456678899999999998654 4467899983  2111               0112232222 233568999999999


Q ss_pred             CCEEEEEEEEeC
Q psy14060        200 DSGVFAVIAENR  211 (283)
Q Consensus       200 d~G~Y~C~a~n~  211 (283)
                      |+|.|+|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=2.1e-05  Score=52.97  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecC-C--EEEEEeC--CEe---c------------CCCCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPL-P--TIKWFRE--DFP---I------------TSSPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~-~--~~~W~k~--~~~---~------------~~~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      +..+.+..|++++|.|....... .  .+.|||.  ++.   +            .+..............|.|.++..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            45567888999999999854322 2  4789983  221   1            0111223444566778999999999


Q ss_pred             CCEEEEEEEE
Q psy14060        200 DSGVFAVIAE  209 (283)
Q Consensus       200 d~G~Y~C~a~  209 (283)
                      |+|.|+|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=2.8e-06  Score=56.93  Aligned_cols=72  Identities=15%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             cCCceeecCCCcEEEEEEEeeec-CCEEEEEeC--CEecC----------CCC--CeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP-LPTIKWFRE--DFPIT----------SSP--DFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~--~~~~~----------~~~--~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      .+..+.+.+|++|+|.|..++.. ...+.|||.  +..+.          ...  ++.+........|.|.++..+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            34567888999999999987543 345899984  22110          011  1222223445689999999999999


Q ss_pred             EEEEEEe
Q psy14060        204 FAVIAEN  210 (283)
Q Consensus       204 Y~C~a~n  210 (283)
                      |+|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9998653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.8e-06  Score=53.45  Aligned_cols=72  Identities=8%  Similarity=-0.028  Sum_probs=46.7

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCC----E----EEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATET----T----EMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~----~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ++|.++..++..|..|++|+|.|+.............+..    .    .....+....+.|.+++..|+|.|+|.....
T Consensus         3 pkPsLsa~P~~~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2           3 IKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CCCEEEeeCCCccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            5788888888888999999999987543322111111110    0    0011235678999999999999999976544

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=3e-06  Score=56.61  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=51.2

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---cC---C------CCCeEEEEe--CCEEEEEEcCCCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---IT---S------SPDFQIHTF--STKSILIMRQVFMED  200 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~~---~------~~~~~~~~~--~~~~~l~i~~~~~~d  200 (283)
                      ...+..+.+.+|++++|.|.........+.|||..  ..   +.   .      ..++.....  .....|.|.++..+|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            45566778999999999998866555679999842  11   10   0      112222211  234579999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999987654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.5e-06  Score=57.20  Aligned_cols=62  Identities=6%  Similarity=0.026  Sum_probs=42.0

Q ss_pred             eeecCcEEEEEEEc-cCccce-EEeecC--------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060         60 IHTAKSQQVQKEKK-GDKEIV-RKITAT--------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS  123 (283)
Q Consensus        60 v~~g~~v~l~C~~~-g~~~i~-~~~~~~--------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~  123 (283)
                      ..+|+.+.|.|.+. +.+..+ .|...+        ...++...+  ..|.|.+++.+|+|.|+|.+.|..+..
T Consensus        14 ~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~   85 (101)
T d1iray1          14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCL   85 (101)
T ss_dssp             EETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             EeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeE
Confidence            44577899999885 555333 333222        122222222  379999999999999999999998853

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.02  E-value=3.3e-07  Score=61.53  Aligned_cols=61  Identities=7%  Similarity=-0.111  Sum_probs=42.8

Q ss_pred             eeecCcEEEEEEE-ccCccce-EEeecC-------------CCEEEEEcCCEEEEEEccCCCCCCe---EEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEK-KGDKEIV-RKITAT-------------ETTEMEHKGKIQERVVDASELDDDG---YYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~-~g~~~i~-~~~~~~-------------~~~~~~~~~~~~~L~i~~~~~~D~G---~Y~C~a~n~~~  121 (283)
                      +.+|++++|.|.+ .|.|... .|+...             .++...   ....|.|.+++.+|+|   .|.|.|.|..+
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG---PDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC---TTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc---cccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            5679999999997 7888433 333221             122222   2346899999999887   69999999987


Q ss_pred             ee
Q psy14060        122 LS  123 (283)
Q Consensus       122 ~~  123 (283)
                      ..
T Consensus        91 ~~   92 (111)
T d1biha2          91 DE   92 (111)
T ss_dssp             SS
T ss_pred             Cc
Confidence            44

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-05  Score=53.19  Aligned_cols=71  Identities=10%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             eecCCCcEEEEEEEee-ecC--CEEEEEeCCEecCCCCCeE-EEE---eCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        144 RAFEQDQARFEVEFDG-DPL--PTIKWFREDFPITSSPDFQ-IHT---FSTKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g-~p~--~~~~W~k~~~~~~~~~~~~-~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+..|+.++|.|.+.+ +|.  +.+.|++++..+....... ...   ....+.|.+......+...|+|.|.|..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            3678999999999976 464  3799999988764210000 000   001234666655545555899999987543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=3.8e-06  Score=56.16  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEe---c----------C---CCCCeEEEEe-CCEEEEEEcCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFP---I----------T---SSPDFQIHTF-STKSILIMRQVFM  198 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~---~----------~---~~~~~~~~~~-~~~~~l~i~~~~~  198 (283)
                      ..|..+.+.+|++++|.|...+ ....+.|||.  +..   +          .   ...++..... +....|.|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            4466778899999999998544 3467999974  211   1          0   0122333222 2346899999999


Q ss_pred             CCCEEEEEEEEe
Q psy14060        199 EDSGVFAVIAEN  210 (283)
Q Consensus       199 ~d~G~Y~C~a~n  210 (283)
                      +|+|.|+|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.01  E-value=1.1e-05  Score=54.02  Aligned_cols=74  Identities=9%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Ee---c---C---------CCCCeEEEE-eCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---T---------SSPDFQIHT-FSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~---~---~---------~~~~~~~~~-~~~~~~l~i~~~~  197 (283)
                      +...|..+.+.+|++++|.|.... ....+.|||..  ..   |   .         ...++.... ......|.|.++.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            345567788899999999998643 34679999853  11   1   0         011222222 2234579999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|+|.|+|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          83 LEDSAMYFCASSL   95 (113)
T ss_dssp             GGGCEEECEEEES
T ss_pred             cCCceeEEEEeec
Confidence            9999999998754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.01  E-value=2.3e-05  Score=53.20  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             ecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe---c------------C--CCCCeEEEEe--CCEEEEEEc
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP---I------------T--SSPDFQIHTF--STKSILIMR  194 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~---~------------~--~~~~~~~~~~--~~~~~l~i~  194 (283)
                      .++..+...+|++++|.|.++|..  ...+.|||.  ++.   +            .  ...++.+...  .....|.|.
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~   85 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccc
Confidence            334456778899999999998743  346899984  211   1            0  1234555543  346789999


Q ss_pred             CCCCCCCEEEEEEEEe
Q psy14060        195 QVFMEDSGVFAVIAEN  210 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n  210 (283)
                      ++..+|+|.|+|....
T Consensus        86 ~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          86 NVEKQDIATYYCALWE  101 (123)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccCcEEEEeeeC
Confidence            9999999999998754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=51.42  Aligned_cols=72  Identities=10%  Similarity=0.122  Sum_probs=52.0

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      .+|.+...+. ..+..|++|+|.|.... +...+.|+|+|....    ...........+.|.+++.+|+|+|+|...
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeE
Confidence            3566666554 46888999999998643 567899999875321    122223456779999999999999999743

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.2e-06  Score=53.78  Aligned_cols=72  Identities=10%  Similarity=0.034  Sum_probs=47.4

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCc-cceEEeecCC--CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDK-EIVRKITATE--TTEMEHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ++|.++..++..|..|++|+|.|...... ........+.  .......+....+.|.+++.+|+|.|+|.....
T Consensus         4 PkP~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            57888888888889999999999863222 1111111111  111122234578999999999999999977544

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=7.8e-06  Score=54.89  Aligned_cols=73  Identities=10%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------CC---------CCCeEEE-EeCCEEEEEEcCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------TS---------SPDFQIH-TFSTKSILIMRQVFME  199 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------~~---------~~~~~~~-~~~~~~~l~i~~~~~~  199 (283)
                      ..|..+.+.+|++++|.|..+. ....+.||+..  ..+      ..         ..++... .......|.|.++..+
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            3456678899999999999753 45689999742  110      00         0111111 1123457999999999


Q ss_pred             CCEEEEEEEEeC
Q psy14060        200 DSGVFAVIAENR  211 (283)
Q Consensus       200 d~G~Y~C~a~n~  211 (283)
                      |+|.|+|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999987643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=9.1e-06  Score=53.70  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=42.7

Q ss_pred             eeecCcEEEEEEEccCc--cce----------E---------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------R---------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.          .         ......++.....+....|.|.++.++|+|.|.|.+.+
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          13 VATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            56788999999886433  222          1         11234566666677889999999999999999997543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=1.2e-05  Score=53.87  Aligned_cols=75  Identities=9%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------C-C--------CCCeEEE-EeCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------T-S--------SPDFQIH-TFSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------~-~--------~~~~~~~-~~~~~~~l~i~~~~  197 (283)
                      +...|..+.+.+|++++|.|.... ....+.|||.  |..+      . .        ..++... .......|.|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            344566778889999999998643 4567899984  2111      0 0        1112221 12334689999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy14060        198 MEDSGVFAVIAENR  211 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~  211 (283)
                      .+|+|.|+|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999987643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.97  E-value=1.9e-05  Score=51.43  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=46.6

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCCe-EEEEeC--C---EEEEEEcCCCCCCCEEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPDF-QIHTFS--T---KSILIMRQVFMEDSGVF  204 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~~-~~~~~~--~---~~~l~i~~~~~~d~G~Y  204 (283)
                      ||.+.+.+.. .+..|+.++|.|.+.|. | ...++|+++|..+...... .....+  .   .+.|.+.   .++.+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEE
Confidence            5655543332 34567889999999996 4 3689999999887542110 011111  1   1234443   4566789


Q ss_pred             EEEEEeCC
Q psy14060        205 AVIAENRG  212 (283)
Q Consensus       205 ~C~a~n~~  212 (283)
                      +|.+.+..
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998865

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-05  Score=51.39  Aligned_cols=80  Identities=9%  Similarity=0.029  Sum_probs=47.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      .+|.....+. ..+..|+.++|.|.+.|. |. ..++|++||..+..........  ++.........+..++.+.|+|.
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   82 (100)
T d1k5nb_           4 RTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR   82 (100)
T ss_dssp             BCCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEE
Confidence            4565544322 134567889999999996 43 4899999999885422111111  12222222223345567789999


Q ss_pred             EEeCC
Q psy14060        208 AENRG  212 (283)
Q Consensus       208 a~n~~  212 (283)
                      +.+..
T Consensus        83 V~H~s   87 (100)
T d1k5nb_          83 VNHVT   87 (100)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=9.5e-06  Score=54.43  Aligned_cols=60  Identities=8%  Similarity=0.064  Sum_probs=43.0

Q ss_pred             eeecCcEEEEEEEccCc---cce--E--------E---e------------ecCCCEEEEEcCCEEEEEEccCCCCCCeE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV--R--------K---I------------TATETTEMEHKGKIQERVVDASELDDDGY  111 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~--~--------~---~------------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  111 (283)
                      +.+|++|+|.|.+.+..   .+.  +        .   +            ....++.....+....|+|.+++++|+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg~   91 (114)
T d1akjd_          12 WNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGY   91 (114)
T ss_dssp             CCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             ccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCEE
Confidence            66789999999986432   222  0        0   0            11245666666778899999999999999


Q ss_pred             EEEEEEec
Q psy14060        112 YAITERKY  119 (283)
Q Consensus       112 Y~C~a~n~  119 (283)
                      |.|.+...
T Consensus        92 YyCa~~~~   99 (114)
T d1akjd_          92 YFCSALSN   99 (114)
T ss_dssp             EEEEEEET
T ss_pred             EeEeEcCC
Confidence            99987654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=3.3e-06  Score=56.03  Aligned_cols=33  Identities=9%  Similarity=0.045  Sum_probs=25.9

Q ss_pred             CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         86 ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        86 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +|..+.   ...+|.|.+++.+|+|.|+|.+.+..+
T Consensus        63 gR~~l~---~ngSL~I~~v~~~D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          63 GREIIY---SNGSLLFQMITMKDMGVYTLDMTDENY   95 (107)
T ss_dssp             SSEEEC---TTSCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             eEEEEc---ccccEEEcCCCchhCEEEEEEEEECCC
Confidence            355554   235799999999999999999877654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=4.8e-05  Score=49.42  Aligned_cols=67  Identities=9%  Similarity=0.013  Sum_probs=42.4

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST--KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..|+.++|.|.+.|. |. ..++|+++|..+...........+.  ........+..++.+.|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            457789999999996 43 5899999999886533222222221  1222222233456678999998864

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=1.3e-05  Score=53.52  Aligned_cols=73  Identities=8%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             EecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------C-------C--CCCeEEE-EeCCEEEEEEcCCCC
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------T-------S--SPDFQIH-TFSTKSILIMRQVFM  198 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------~-------~--~~~~~~~-~~~~~~~l~i~~~~~  198 (283)
                      ...|..+.+.+|++++|.|..+. ....+.||+.  +..+      .       .  ..++... .......|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            34466678899999999998754 4567999984  2111      0       0  0111111 122234799999999


Q ss_pred             CCCEEEEEEEEe
Q psy14060        199 EDSGVFAVIAEN  210 (283)
Q Consensus       199 ~d~G~Y~C~a~n  210 (283)
                      +|+|.|+|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.94  E-value=4.7e-05  Score=49.40  Aligned_cols=78  Identities=5%  Similarity=-0.058  Sum_probs=52.7

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      .+|.+...+. ..+..|++|+|.|...- +...+.|+|+|...... ..............|..+...|+|+|+|.....
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            4677666654 47789999999997654 56789999998643211 011122334455677778888999999987654


Q ss_pred             C
Q psy14060        212 G  212 (283)
Q Consensus       212 ~  212 (283)
                      .
T Consensus        82 ~   82 (99)
T d1nkra2          82 D   82 (99)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.93  E-value=1.2e-05  Score=53.05  Aligned_cols=59  Identities=12%  Similarity=-0.032  Sum_probs=43.3

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EE---------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RK---------ITATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~---------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.          ..         .....++.....+....|.|.++.++|+|.|.|.+.+
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          12 ASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            56788999999876443  222          11         1124567777777889999999999999999997643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=1.6e-05  Score=52.50  Aligned_cols=58  Identities=10%  Similarity=0.127  Sum_probs=43.1

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|...+..  .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            56788999999997533  222          111         12457777777788999999999999999999654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.93  E-value=1.4e-05  Score=52.95  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             eeecCcEEEEEEEccCc--cce-------------------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV-------------------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|......  .+.                   +.-....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcC
Confidence            56788999999876433  222                   11122467777777889999999999999999999654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.9e-05  Score=49.40  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             cCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC-C----EEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060        146 FEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS-T----KSILIMRQVFMEDSGVFAVIAENRGGKAKC  217 (283)
Q Consensus       146 ~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  217 (283)
                      ..++.++|.|.+.| +|.+.+.|++++..+............ .    .+.|.+.   ..+...|+|.+.+..-....
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcE
Confidence            35678899999987 588899999999887543221111111 1    2245554   34567999999987655443

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.91  E-value=1.6e-05  Score=51.68  Aligned_cols=73  Identities=8%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             CCCCceeeecCCeeeecCcEEEEEEEccCccceEEeecC--CCEEE---EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         47 VPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITAT--ETTEM---EHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        47 ~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~--~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      -++|.+...++..|..|++|+|.|+..-..........+  .....   ...+....+.|..+...|+|.|+|.....
T Consensus         4 ~pkPsLsa~P~~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           4 YEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SCCCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCCEEEEeCCCcccCCCeEEEEECCCCCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            357888888888899999999999876443222222211  11111   12334566788888899999999976544

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.91  E-value=2.7e-07  Score=60.18  Aligned_cols=71  Identities=13%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEEEEeC--CEecC------------CCCCeEEEE--eCCEEEEEEcCCCCCCCEEEE
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPIT------------SSPDFQIHT--FSTKSILIMRQVFMEDSGVFA  205 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  205 (283)
                      .+.+.+|++++|.|.... ....+.|||.  +..+.            ...++.+..  ......|.|.++..+|+|.|+
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            356789999999998754 3457999984  22110            011222221  223457999999999999999


Q ss_pred             EEEEeCCc
Q psy14060        206 VIAENRGG  213 (283)
Q Consensus       206 C~a~n~~g  213 (283)
                      |.+....+
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            98876544

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=9e-06  Score=54.37  Aligned_cols=73  Identities=5%  Similarity=0.079  Sum_probs=48.3

Q ss_pred             ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC--Eec------C-CC--------CCeEEE-EeCCEEEEEEcCCCCC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------T-SS--------PDFQIH-TFSTKSILIMRQVFME  199 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~--~~~------~-~~--------~~~~~~-~~~~~~~l~i~~~~~~  199 (283)
                      ..|..+.+.+|++++|.|.... ....+.||+..  ..+      . ..        ..+... .......|.|.++..+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            4456678899999999998753 34679999842  111      0 00        011111 1123457999999999


Q ss_pred             CCEEEEEEEEeC
Q psy14060        200 DSGVFAVIAENR  211 (283)
Q Consensus       200 d~G~Y~C~a~n~  211 (283)
                      |+|.|+|.+...
T Consensus        82 Dsa~YyCA~~~~   93 (112)
T d2cdeb1          82 HTSQYLCASSEN   93 (112)
T ss_dssp             TCSEEEEEEECS
T ss_pred             ccccEEEEEecC
Confidence            999999988654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.3e-05  Score=52.83  Aligned_cols=71  Identities=13%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             CCceeecCCCcEEEEEEEeeecCC---EEEEEeCC--Ee---c-----CC-------CCCeEEEEeCCEEEEEEcCCCCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPLP---TIKWFRED--FP---I-----TS-------SPDFQIHTFSTKSILIMRQVFME  199 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~~---~~~W~k~~--~~---~-----~~-------~~~~~~~~~~~~~~l~i~~~~~~  199 (283)
                      |..+.+..|+.++|.|........   .+.|||..  ..   +     ..       ..............|.|.++..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            445677889999999998543222   48899852  11   1     00       00111222344668999999999


Q ss_pred             CCEEEEEEEEe
Q psy14060        200 DSGVFAVIAEN  210 (283)
Q Consensus       200 d~G~Y~C~a~n  210 (283)
                      |+|.|+|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.87  E-value=1.1e-05  Score=53.34  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=42.7

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EE---------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RK---------ITATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~---------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|...+..  .+.          +.         -....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          13 VSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeec
Confidence            56788999999887543  222          11         122457777766778999999999999999999754

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.4e-05  Score=48.66  Aligned_cols=78  Identities=8%  Similarity=-0.038  Sum_probs=49.4

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC--eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--FQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.+...+. ..+..|++|+|.|.... ....+.++|++........  ......+....+.|.+++..|+|+|+|....
T Consensus         4 kPsLsa~P~-~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPS-PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCC-CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            566666664 45889999999998643 4567888888765322110  0011123456799999999999999998765


Q ss_pred             CC
Q psy14060        211 RG  212 (283)
Q Consensus       211 ~~  212 (283)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.87  E-value=2.4e-05  Score=51.62  Aligned_cols=59  Identities=7%  Similarity=0.027  Sum_probs=43.1

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++++|.|...+..  .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+..
T Consensus        12 ~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          12 ASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             ECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            56788999999886433  222          111         123567777777889999999999999999997543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.86  E-value=2.5e-05  Score=51.60  Aligned_cols=58  Identities=7%  Similarity=0.057  Sum_probs=43.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|......  .+.          ..+         ....++..........|.|.+++++|+|.|.|.+.
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          13 MSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEec
Confidence            56788999999987544  222          111         12456666777788999999999999999999754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.1e-05  Score=52.25  Aligned_cols=69  Identities=14%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             eeecCCCcEEEEEEEeeecC---CE--EEEEeCCEec----------C----CCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060        143 CRAFEQDQARFEVEFDGDPL---PT--IKWFREDFPI----------T----SSPDFQIHTFSTKSILIMRQVFMEDSGV  203 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~---~~--~~W~k~~~~~----------~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~  203 (283)
                      +.+..|++++|.|..+..+.   ..  ..|.++....          .    .....+........+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            46778999999998864222   22  3444443211          0    0111122233344579999999999999


Q ss_pred             EEEEEEeC
Q psy14060        204 FAVIAENR  211 (283)
Q Consensus       204 Y~C~a~n~  211 (283)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998644

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=2.2e-05  Score=51.78  Aligned_cols=59  Identities=8%  Similarity=-0.014  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccCc--cce-------------------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV-------------------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.                   .......++.....+....|.|.+++++|+|.|.|.+.+
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          13 ASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            55688999999887543  222                   111223456666667789999999999999999996543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.9e-05  Score=53.51  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             CCceeecCCCcEEEEEEEeee-------cCCEEEEEeCCEecC---------------C--CCCeEEEEe--CCEEEEEE
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD-------PLPTIKWFREDFPIT---------------S--SPDFQIHTF--STKSILIM  193 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~-------p~~~~~W~k~~~~~~---------------~--~~~~~~~~~--~~~~~l~i  193 (283)
                      +..+.+.+|+.|.|.|..+..       ....+.|++....-.               .  ..++.+...  ....+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456789999999999998521       113578988642210               0  113333321  23457999


Q ss_pred             cCCCCCCCEEEEEEEEeC
Q psy14060        194 RQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n~  211 (283)
                      .++..+|+|.|+|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999998653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.84  E-value=2.2e-05  Score=52.22  Aligned_cols=59  Identities=8%  Similarity=0.009  Sum_probs=39.1

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EE-----------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RK-----------ITATETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++++|.|...+..  .+.          ..           .....+......+....|.|.++.++|+|.|.|.+
T Consensus        11 ~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (110)
T d1u3ha1          11 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA   90 (110)
T ss_dssp             EETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECC
T ss_pred             EcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeee
Confidence            56788999999886533  121          10           11111222233456789999999999999999976


Q ss_pred             Ee
Q psy14060        117 RK  118 (283)
Q Consensus       117 ~n  118 (283)
                      ..
T Consensus        91 ~~   92 (110)
T d1u3ha1          91 SA   92 (110)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=3.8e-05  Score=51.39  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             cCCceeecCCCcEEEEEEEee---ec---CCEEEEEeCCEe----c---------C--CCCCeEEEE--eCCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDG---DP---LPTIKWFREDFP----I---------T--SSPDFQIHT--FSTKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g---~p---~~~~~W~k~~~~----~---------~--~~~~~~~~~--~~~~~~l~i~~  195 (283)
                      .|..+.+.+|+.|.|.|....   .+   ...+.|++....    +         .  ...++.+..  .....+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            356678999999999999852   11   234667774211    1         0  112333322  12345799999


Q ss_pred             CCCCCCEEEEEEEEeCC
Q psy14060        196 VFMEDSGVFAVIAENRG  212 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n~~  212 (283)
                      +..+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999986543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.83  E-value=2.4e-05  Score=51.36  Aligned_cols=60  Identities=5%  Similarity=0.067  Sum_probs=43.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|...+..  .+.          ..+         ....++..........|.|.+++++|+|.|.|.+.+
T Consensus        10 ~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          10 VSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            56788999999876543  222          111         123456666677789999999999999999997654


Q ss_pred             c
Q psy14060        119 Y  119 (283)
Q Consensus       119 ~  119 (283)
                      .
T Consensus        90 ~   90 (103)
T d8faba1          90 N   90 (103)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.83  E-value=5.5e-05  Score=48.72  Aligned_cols=71  Identities=13%  Similarity=-0.036  Sum_probs=47.3

Q ss_pred             CCceeeecCCeeeecCcEEEEEEEccCccceEEeecCC-CE-----EEEE-cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         49 EPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATE-TT-----EMEH-KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~-~~-----~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +|.+...++..|..|++|+|.|..............+. ..     .... .+....+.|.+++..|+|.|+|.....
T Consensus         2 KPsLsa~P~~~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPGPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCCCccCCCCcEEEEECCCCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            67888888888889999999999764442221111111 11     0111 123578999999999999999976544

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=4e-05  Score=50.64  Aligned_cols=59  Identities=7%  Similarity=0.051  Sum_probs=42.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|...+..  .+.          ..+         ....++.....+....|.|.+++++|+|.|.|...+
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          13 ASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             ecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            55688999999987533  222          111         123455666677789999999999999999996543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.82  E-value=2.1e-05  Score=52.36  Aligned_cols=61  Identities=5%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      .+.+|++++|.|...+..    .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.
T Consensus        11 ~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA   90 (111)
T d1rzfl1          11 SAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCG   90 (111)
T ss_dssp             EECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEe
Confidence            366788999999876432    122          111         124566777777889999999999999999997


Q ss_pred             EEec
Q psy14060        116 ERKY  119 (283)
Q Consensus       116 a~n~  119 (283)
                      +...
T Consensus        91 ~~~~   94 (111)
T d1rzfl1          91 TWDS   94 (111)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=5.7e-05  Score=50.45  Aligned_cols=60  Identities=5%  Similarity=-0.015  Sum_probs=41.3

Q ss_pred             eeecCcEEEEEEEccCc---cce----------E----------EeecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------R----------KITATETTEMEH--KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~----------~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++|+|.|...+..   .+.          +          ......++.+..  .+....|.|.+++++|+|.|.|
T Consensus        11 v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (114)
T d3bp5a1          11 VSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC   90 (114)
T ss_dssp             EETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEE
Confidence            66788999999886533   222          1          112234566554  3357889999999999999999


Q ss_pred             EEEec
Q psy14060        115 TERKY  119 (283)
Q Consensus       115 ~a~n~  119 (283)
                      .+...
T Consensus        91 a~~~~   95 (114)
T d3bp5a1          91 GAISL   95 (114)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            77543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=3.7e-05  Score=51.31  Aligned_cols=61  Identities=8%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEM--EHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|...+..  .+.          +.+         ....++..  ........|.|.+++.+|+|.|.|.+
T Consensus        12 v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~   91 (113)
T d2bnqd1          12 VPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAV   91 (113)
T ss_dssp             EETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeE
Confidence            56788999999987654  121          111         11223332  23456889999999999999999987


Q ss_pred             Eecc
Q psy14060        117 RKYY  120 (283)
Q Consensus       117 ~n~~  120 (283)
                      ....
T Consensus        92 ~~~~   95 (113)
T d2bnqd1          92 RPTS   95 (113)
T ss_dssp             EESS
T ss_pred             ecCC
Confidence            6543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.1e-05  Score=53.96  Aligned_cols=69  Identities=10%  Similarity=0.136  Sum_probs=46.8

Q ss_pred             ceeecCCCcEEEEEEEeee--cCCEEEEEeC--CEe---cC---C---------CCCeEEEEe--CCEEEEEEcCCCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGD--PLPTIKWFRE--DFP---IT---S---------SPDFQIHTF--STKSILIMRQVFMED  200 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~--~~~---~~---~---------~~~~~~~~~--~~~~~l~i~~~~~~d  200 (283)
                      ...+.+|++++|.|..++.  ....+.|||.  +..   +.   .         ..++.+...  ....+|.|.++..+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            3567789999999988642  3456889974  211   10   0         023444432  345679999999999


Q ss_pred             CEEEEEEEEe
Q psy14060        201 SGVFAVIAEN  210 (283)
Q Consensus       201 ~G~Y~C~a~n  210 (283)
                      +|.|+|.+..
T Consensus        88 sg~Y~Cav~~   97 (113)
T d1smoa_          88 SGLYQCVIYQ   97 (113)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEEEEC
Confidence            9999998744

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=3.2e-05  Score=51.07  Aligned_cols=58  Identities=7%  Similarity=0.061  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|......  .+.          ..+         ....++.....+....|.|.+++++|++.|.|.+.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          13 TSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeEC
Confidence            56788999999876432  222          111         12456777777788999999999999999999654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.80  E-value=4.6e-05  Score=50.49  Aligned_cols=59  Identities=5%  Similarity=0.008  Sum_probs=43.7

Q ss_pred             eeecCcEEEEEEEccCc-----cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-----EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-----~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++++|.|...+..     .+.          +.+         ....++.....+....|.|.++..+|+|.|.|.
T Consensus        12 vs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa   91 (110)
T d1oaql_          12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCA   91 (110)
T ss_dssp             ECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEE
Confidence            66788999999987432     122          111         124577777777889999999999999999997


Q ss_pred             EEe
Q psy14060        116 ERK  118 (283)
Q Consensus       116 a~n  118 (283)
                      ...
T Consensus        92 ~~~   94 (110)
T d1oaql_          92 LWY   94 (110)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.79  E-value=2.3e-05  Score=52.06  Aligned_cols=60  Identities=8%  Similarity=0.075  Sum_probs=40.3

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|...+..   .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        10 v~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          10 CAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             EETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEe
Confidence            66788999999875432   222          111         11223333444578899999999999999999775


Q ss_pred             ec
Q psy14060        118 KY  119 (283)
Q Consensus       118 n~  119 (283)
                      ..
T Consensus        90 ~~   91 (110)
T d2esvd1          90 RS   91 (110)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.79  E-value=1.9e-05  Score=53.35  Aligned_cols=73  Identities=14%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             ecCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E---ec----CC---------CCCeEEEEe--CCEEEEEEcC
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PI----TS---------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~---~~----~~---------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ..+..+....|++++|.|.+.+..  ...+.||+..  .   .+    ..         ..++.+...  .....|.|.+
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~   85 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence            344456777899999999987642  4568999842  1   11    00         112333332  3456899999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      +..+|+|.|+|....
T Consensus        86 l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          86 LEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CCGGGCSEEEEEECC
T ss_pred             cccccceeEEEEEcC
Confidence            999999999998653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.78  E-value=2.4e-05  Score=51.80  Aligned_cols=58  Identities=9%  Similarity=0.077  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++++|.|...+..   .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          13 LSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             ECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeeecC
Confidence            56688999999876432   222          122         12456666667788999999999999999999754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.78  E-value=0.00014  Score=46.99  Aligned_cols=67  Identities=16%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC---eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD---FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .++..+|.|.+.|. |. ..++|++||..+.....   .....++.........+...+...|+|.+.+..-
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence            45667899999996 43 48999999988754311   1111122233333344566778899999988753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=4.1e-05  Score=50.75  Aligned_cols=58  Identities=7%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++++|.|...+..  .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        15 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          15 ASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeec
Confidence            55688999999987543  222          111         12456777777788999999999999999999754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.77  E-value=4.2e-05  Score=50.45  Aligned_cols=59  Identities=10%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.          ..+         ...+++.....+....|.|.++.++|+|.|.|...+
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          13 ASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            56788999999886543  121          111         123467777777889999999999999999996543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=6.7e-05  Score=49.60  Aligned_cols=70  Identities=13%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             ceeecCCCcEEEEEEEeee--cCCEEEEEeC--CE----ecC-C----------CCCeEEEEe--CCEEEEEEcCCCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGD--PLPTIKWFRE--DF----PIT-S----------SPDFQIHTF--STKSILIMRQVFMED  200 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~--~~----~~~-~----------~~~~~~~~~--~~~~~l~i~~~~~~d  200 (283)
                      ...+.+|++++|.|..++.  ....+.|+|.  ++    .+. .          ..++.+..+  ....+|.|.++..+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4578899999999998764  4567899984  22    111 1          123444433  345689999999999


Q ss_pred             CEEEEEEEEeC
Q psy14060        201 SGVFAVIAENR  211 (283)
Q Consensus       201 ~G~Y~C~a~n~  211 (283)
                      +|.|+|...+.
T Consensus        84 sa~YyCa~~~~   94 (110)
T d1u9ka_          84 SGLYRCVIYHP   94 (110)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEeCC
Confidence            99999987543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.76  E-value=3.5e-05  Score=51.33  Aligned_cols=57  Identities=11%  Similarity=0.083  Sum_probs=41.6

Q ss_pred             eeecCcEEEEEEEccCc-------cce----------EE---------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-------EIV----------RK---------ITATETTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-------~i~----------~~---------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      +.+|++|+|.|...+..       .+.          +.         .....++.....+....|.|.+++.+|++.|.
T Consensus        13 v~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYy   92 (112)
T d1mjul1          13 VTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYY   92 (112)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEE
Confidence            55688999999876531       122          11         12244677777778999999999999999999


Q ss_pred             EEE
Q psy14060        114 ITE  116 (283)
Q Consensus       114 C~a  116 (283)
                      |..
T Consensus        93 Ca~   95 (112)
T d1mjul1          93 CLQ   95 (112)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            953

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.75  E-value=2.8e-05  Score=52.05  Aligned_cols=29  Identities=14%  Similarity=0.158  Sum_probs=23.9

Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ...+....|.|.+++++|+|.|.|.+...
T Consensus        68 ~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          68 QKSTSSFNFTITASQVVDSAVYFCALSGF   96 (114)
T ss_dssp             ETTTTEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             cCCCCEEEEeecccccccCCCceEeCCCC
Confidence            33456889999999999999999976554

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.8e-05  Score=51.15  Aligned_cols=69  Identities=9%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             eeecCCCcEEEEEEEeeec----CCEEEEEeCCEecCC------------CCCeEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060        143 CRAFEQDQARFEVEFDGDP----LPTIKWFREDFPITS------------SPDFQIHTFSTKSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p----~~~~~W~k~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  206 (283)
                      ++...|++++|.|......    ...+.|.+++..+..            ..+..+. .....+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEEE
Confidence            5678899999999875422    246888888765411            1122222 1223579999999999999999


Q ss_pred             EEEeCC
Q psy14060        207 IAENRG  212 (283)
Q Consensus       207 ~a~n~~  212 (283)
                      .+.+..
T Consensus        83 ~V~~~~   88 (105)
T d1dr9a1          83 VVLKYE   88 (105)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            987653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.74  E-value=4.7e-05  Score=50.60  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=42.0

Q ss_pred             eeecCcEEEEEEEccCc------cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK------EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~------~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++|+|.|...+..      .+.          +.+         ....++.....+....|.|.+++++|++.|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   92 (111)
T d2gsia1          13 VSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYC   92 (111)
T ss_dssp             EETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEE
Confidence            66788999999875321      122          111         12357777777788999999999999999999


Q ss_pred             EEE
Q psy14060        115 TER  117 (283)
Q Consensus       115 ~a~  117 (283)
                      .+.
T Consensus        93 a~~   95 (111)
T d2gsia1          93 SHI   95 (111)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.74  E-value=4.2e-05  Score=49.32  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=50.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENR  211 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~  211 (283)
                      +|.+...+ ...+..|.+|+|.|.... ....+.++|++............. ......+.|.+++.+|+|+|.|.....
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            45555554 457889999999998653 556888999875321100000111 112456999999999999999987644

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.74  E-value=1.9e-05  Score=52.24  Aligned_cols=58  Identities=9%  Similarity=0.009  Sum_probs=41.6

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|......  .+.          ..|         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 ~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          13 ASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             BCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            66788999999876544  222          111         12345555566678999999999999999999654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=5.3e-05  Score=49.67  Aligned_cols=57  Identities=7%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             eeecCcEEEEEEEccCc-cce----------E---------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------R---------KITATETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|...... .+.          .         ......++.....+....|.|.++..+|+|.|.|..
T Consensus        12 ~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          12 ASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             ECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEe
Confidence            55688999999875433 222          1         111245566666678899999999999999999965

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=5.3e-05  Score=50.12  Aligned_cols=58  Identities=7%  Similarity=0.031  Sum_probs=42.2

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++++|.|......  .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          13 ASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            45688999999886443  222          111         12356666667788999999999999999999764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.3e-05  Score=47.41  Aligned_cols=66  Identities=14%  Similarity=0.182  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCC--CCeEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSS--PDFQIHTFST--KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~--~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++.++|.|.+.|. |. ..++|++||..+...  ........+.  ........+...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            45678999999995 54 489999999987532  1122222222  2222222233455678999998864

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.72  E-value=4.9e-05  Score=50.13  Aligned_cols=58  Identities=5%  Similarity=-0.008  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|......  .+.          ..|         ....++.....+....|.|.+++++|+|.|.|.+.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          13 ASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEEC
Confidence            55688999999987432  222          111         22456777777789999999999999999999654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.71  E-value=0.00014  Score=47.19  Aligned_cols=77  Identities=13%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGV  203 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~  203 (283)
                      .+|.....+.. .+..|+..+|.|.+.|. |. ..++|++||..+..... .....  ++.   .+.|.+..   .+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            45655443222 23456788999999996 43 58999999988754211 01111  111   23455543   34457


Q ss_pred             EEEEEEeCC
Q psy14060        204 FAVIAENRG  212 (283)
Q Consensus       204 Y~C~a~n~~  212 (283)
                      |+|.+.+..
T Consensus        80 ytC~V~H~s   88 (101)
T d1fnga1          80 YDCEVDHWG   88 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998864

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.7e-06  Score=52.71  Aligned_cols=70  Identities=13%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCCE-----EEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETT-----EMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      ++|.+...++..|..|++|+|.|+..-..........+...     .....+....+.|.+++.+|+|.|+|...
T Consensus         3 PkP~Lsa~Ps~~V~~G~~VTL~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1           3 PKPTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeECCCccCCCCcEEEEEeCCCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            57888888888788999999999864322111111111100     00011234578899999999999999754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.70  E-value=4.4e-05  Score=51.11  Aligned_cols=59  Identities=12%  Similarity=0.098  Sum_probs=39.9

Q ss_pred             eeecCcEEEEEEEccCc-cce----------EE---------eecCCCE--EEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------RK---------ITATETT--EMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~~---------~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++++|.|...+.. .+.          ..         .....++  ..........|.|.++.++|+|.|.|.+.
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (115)
T d1ogad1          12 IQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGA   91 (115)
T ss_dssp             EETTCCEEEEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ECCCCCEEEEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEccccc
Confidence            66788999999876543 222          10         1112233  33344568999999999999999999765


Q ss_pred             e
Q psy14060        118 K  118 (283)
Q Consensus       118 n  118 (283)
                      .
T Consensus        92 ~   92 (115)
T d1ogad1          92 G   92 (115)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=5.5e-06  Score=53.98  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=23.8

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060         96 IQERVVDASELDDDGYYAITERKYYAL  122 (283)
Q Consensus        96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~  122 (283)
                      ..+|.|.+++.+|+|.|+|.+.+..+.
T Consensus        59 ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1          59 NGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             TSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             CccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            357999999999999999999888764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.69  E-value=0.00015  Score=46.72  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             ecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCCe-EEEE--eCCE---EEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        145 AFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPDF-QIHT--FSTK---SILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~~-~~~~--~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      ...++.++|.|.+.|. | ...++|++||..+...... ....  ++..   +.|.+   ..++...|+|.+.+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCC
Confidence            4456789999999996 4 4689999999987543211 1111  1221   23444   34455689999988654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=8.5e-05  Score=48.47  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=48.6

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe--EEEE-eCC---EEEEEEcCCCCCCCEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF--QIHT-FST---KSILIMRQVFMEDSGV  203 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~--~~~~-~~~---~~~l~i~~~~~~d~G~  203 (283)
                      .+|.+...+.......+..++|.|.+.|. |. ..|.|+++|..+......  .... ++.   .+.|.|..-.......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            35554443322222345678999999986 43 589999999876532110  0111 111   2346665554455679


Q ss_pred             EEEEEEeCCc
Q psy14060        204 FAVIAENRGG  213 (283)
Q Consensus       204 Y~C~a~n~~g  213 (283)
                      |+|.+.+...
T Consensus        84 ytC~V~H~~~   93 (102)
T d1q0xl2          84 YSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCc
Confidence            9999998754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.68  E-value=0.0001  Score=49.10  Aligned_cols=60  Identities=12%  Similarity=0.041  Sum_probs=41.4

Q ss_pred             eeecCcEEEEEEEccCc----cce-----------EEeecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV-----------RKITATETTEMEH--KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~-----------~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +.+|++|+|.|...+..    .+.           ..+....++....  ......|+|.+++.+|+|.|.|.+...
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             ECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence            45788999999987543    122           1222344554443  345789999999999999999987554

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=3.1e-05  Score=51.24  Aligned_cols=27  Identities=11%  Similarity=0.043  Sum_probs=23.4

Q ss_pred             cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         93 KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        93 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ..+...|.|.+++++|+|.|.|.....
T Consensus        66 ~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          66 DAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            457899999999999999999987644

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.66  E-value=0.00011  Score=48.84  Aligned_cols=61  Identities=11%  Similarity=0.024  Sum_probs=41.4

Q ss_pred             eeecCcEEEEEEEccCc----cce-----------EEeecCCCEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV-----------RKITATETTEMEHK--GKIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~-----------~~~~~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +..|++++|.|...+..    .+.           ..+....++.....  .....|.|.+++++|+|.|.|.+....
T Consensus        11 ~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          11 KETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             ECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             EcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            44678999999886533    222           12223344544432  357899999999999999999766543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.0002  Score=47.98  Aligned_cols=67  Identities=6%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             eeecCCCcEEEEEEEeeecC--CEEEE-EeC-CEe---c------------CCCCCeEE--EEeCCEEEEEEcCCCCCCC
Q psy14060        143 CRAFEQDQARFEVEFDGDPL--PTIKW-FRE-DFP---I------------TSSPDFQI--HTFSTKSILIMRQVFMEDS  201 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~--~~~~W-~k~-~~~---~------------~~~~~~~~--~~~~~~~~l~i~~~~~~d~  201 (283)
                      ..+..|++++|.|..++...  ..+.| ++. +..   +            ....++.+  .......+|.|.++..+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            45667899999999875432  23344 443 111   1            00112233  2334566899999999999


Q ss_pred             EEEEEEEE
Q psy14060        202 GVFAVIAE  209 (283)
Q Consensus       202 G~Y~C~a~  209 (283)
                      |.|+|.+.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00026  Score=46.70  Aligned_cols=70  Identities=11%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEec------C---------C--CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI------T---------S--SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~------~---------~--~~~~~~~~~--~~~~~l~i~~  195 (283)
                      .+....+.+|++++|.|.++|..  ...+.|+|.  |+.+      .         +  ..++.+..+  .+...|.|.+
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~   85 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence            44556778899999999999853  356788773  2211      1         1  124555554  3345799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      +..+|++.|+|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999974

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.65  E-value=4.5e-05  Score=50.69  Aligned_cols=59  Identities=8%  Similarity=0.022  Sum_probs=41.4

Q ss_pred             eeecCcEEEEEEEccCc------cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK------EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~------~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++|+|.|......      .+.          +.+         ....++.....+....|.|.+++.+|+|.|.|
T Consensus        13 v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   92 (111)
T d1j05a_          13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYC   92 (111)
T ss_dssp             CCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEE
Confidence            45688999999874211      122          111         12346666666788999999999999999999


Q ss_pred             EEEe
Q psy14060        115 TERK  118 (283)
Q Consensus       115 ~a~n  118 (283)
                      .+.+
T Consensus        93 a~~~   96 (111)
T d1j05a_          93 QQTN   96 (111)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            7543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.65  E-value=7.6e-05  Score=49.53  Aligned_cols=70  Identities=16%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             CceeecCCCcEEEEEEEeeecC--CEEEEEeCC--Ee------cCC----------CCCeEEEEe--CCEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL--PTIKWFRED--FP------ITS----------SPDFQIHTF--STKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~~--~~------~~~----------~~~~~~~~~--~~~~~l~i~~~~~  198 (283)
                      ..-.+.+|++++|.|.++|...  ..+.|+|..  +.      +..          ..++.+..+  .+...|.|.++..
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            3456788999999999998643  357898852  11      111          134556544  3355799999999


Q ss_pred             CCCEEEEEEEEe
Q psy14060        199 EDSGVFAVIAEN  210 (283)
Q Consensus       199 ~d~G~Y~C~a~n  210 (283)
                      +|++.|+|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999997644

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=48.91  Aligned_cols=59  Identities=7%  Similarity=0.146  Sum_probs=43.1

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++++|.|...+..    .+.          +.+         ....++.....+....|.|.+++.+|++.|.|.+
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~   91 (114)
T d2rhea_          12 GTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAA   91 (114)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEee
Confidence            56788999999886532    222          111         1234666666678899999999999999999976


Q ss_pred             Ee
Q psy14060        117 RK  118 (283)
Q Consensus       117 ~n  118 (283)
                      ..
T Consensus        92 ~~   93 (114)
T d2rhea_          92 WN   93 (114)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.1e-05  Score=50.95  Aligned_cols=25  Identities=8%  Similarity=0.113  Sum_probs=21.8

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +..+|.|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~~sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          65 GNFPLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEETTE
T ss_pred             CEEEEEECCCChHHCEEEEEEEecC
Confidence            3567999999999999999988664

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.64  E-value=8.5e-05  Score=49.29  Aligned_cols=58  Identities=9%  Similarity=0.071  Sum_probs=39.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEM--EHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++++|.|...+..  .+.          ..+         ....++..  ...+....|.|.++.++|+|.|.|.+
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   91 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAA   91 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeec
Confidence            56788999999876433  111          111         11223333  33456899999999999999999976


Q ss_pred             E
Q psy14060        117 R  117 (283)
Q Consensus       117 ~  117 (283)
                      .
T Consensus        92 ~   92 (111)
T d1bd2d1          92 M   92 (111)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=5.1e-05  Score=51.03  Aligned_cols=59  Identities=5%  Similarity=-0.002  Sum_probs=42.5

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|+.++|.|...+..  .+.          ..+         ....++..+..+....|.|.+++++|+|.|.|.+.+
T Consensus        13 ~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             ECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            55788999999876433  222          111         124566666666788999999999999999997654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.63  E-value=8.9e-05  Score=47.58  Aligned_cols=27  Identities=11%  Similarity=0.153  Sum_probs=22.8

Q ss_pred             EcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         92 HKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      ......+|.|.+++++|+|.|.|.+..
T Consensus        52 ~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          52 KASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CCCCEEeEEeeccccCcCccceeeEec
Confidence            334578999999999999999997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00032  Score=44.85  Aligned_cols=67  Identities=7%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST--KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..|+.++|.|.+.|. |. ..++|++||..+...........+.  ........+...+...|+|.+.+..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            357789999999995 54 4799999998876432222222211  1122222233455568999998864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.62  E-value=1.8e-05  Score=53.05  Aligned_cols=59  Identities=8%  Similarity=0.018  Sum_probs=38.0

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe------------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI------------TATETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++|+|.|......  .+.          ..+            ....+......+....|.|.++.++|+|.|.|.
T Consensus        12 v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa   91 (115)
T d1i9ea_          12 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccc
Confidence            66788999999876432  111          111            111222222334567899999999999999997


Q ss_pred             EEe
Q psy14060        116 ERK  118 (283)
Q Consensus       116 a~n  118 (283)
                      +..
T Consensus        92 ~~~   94 (115)
T d1i9ea_          92 VSG   94 (115)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0007  Score=41.17  Aligned_cols=73  Identities=12%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             ceeecCCCcEEEEEEEee-ecCCEEEEEeCCE----ecCCCCC-e-EEEEeC--CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        142 PCRAFEQDQARFEVEFDG-DPLPTIKWFREDF----PITSSPD-F-QIHTFS--TKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~----~~~~~~~-~-~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...+..|+...|.|.+.- ...|+++|-|-+.    .+...+. + .....+  ....|++..+-.+|.|.|+|.|....
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            357888999999999964 3679999987443    3332222 1 112112  24579999999999999999997655


Q ss_pred             ce
Q psy14060        213 GK  214 (283)
Q Consensus       213 g~  214 (283)
                      +.
T Consensus        92 ~v   93 (104)
T d1xaua_          92 QV   93 (104)
T ss_dssp             EE
T ss_pred             hh
Confidence            44

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.62  E-value=6.4e-05  Score=50.03  Aligned_cols=60  Identities=8%  Similarity=0.059  Sum_probs=42.8

Q ss_pred             eeecCcEEEEEEEccCc-----cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-----EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-----~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++|+|.|...+..     .+.          ..+         ....++.....+....|.|.+++++|+|.|.|.
T Consensus        12 ~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   91 (112)
T d1lgva1          12 GSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS   91 (112)
T ss_dssp             ECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEe
Confidence            56688999999876421     122          111         123456666667889999999999999999997


Q ss_pred             EEec
Q psy14060        116 ERKY  119 (283)
Q Consensus       116 a~n~  119 (283)
                      +.+.
T Consensus        92 ~~~~   95 (112)
T d1lgva1          92 SYDG   95 (112)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            7543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=4.7e-05  Score=50.63  Aligned_cols=60  Identities=5%  Similarity=0.080  Sum_probs=41.2

Q ss_pred             eeecCcEEEEEEEccCc----cce--E--------Ee---------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV--R--------KI---------TATETTEME--HKGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~--~--------~~---------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++++|.|...+..    .+.  +        .+         ...+++...  ..+....|.|.+++++|+|.|.|
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   91 (111)
T d1cd0a_          12 ESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYC   91 (111)
T ss_dssp             ECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEE
Confidence            56788999999987643    122  1        00         112444443  34668999999999999999999


Q ss_pred             EEEec
Q psy14060        115 TERKY  119 (283)
Q Consensus       115 ~a~n~  119 (283)
                      ...+.
T Consensus        92 A~~~~   96 (111)
T d1cd0a_          92 QSYDA   96 (111)
T ss_dssp             EEEET
T ss_pred             eeccC
Confidence            76543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.60  E-value=0.00021  Score=47.59  Aligned_cols=68  Identities=12%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             ceeecCCCcEEEEEEEeeec----CCEEEEEeC--CEecC--------------C--CCCeEEEEe--CCEEEEEEcCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDP----LPTIKWFRE--DFPIT--------------S--SPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~--~~~~~--------------~--~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ...+.+|++++|.|.++|..    ...+.|||.  ++.+.              +  ..++.+..+  .....|.|.++.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            34567899999999998742    246889974  22110              0  134554433  235679999999


Q ss_pred             CCCCEEEEEEEE
Q psy14060        198 MEDSGVFAVIAE  209 (283)
Q Consensus       198 ~~d~G~Y~C~a~  209 (283)
                      .+|++.|+|...
T Consensus        89 ~eDsAvYyCAr~  100 (120)
T d2agjh1          89 PVDTATYYCART  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEeeEec
Confidence            999999999743

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.59  E-value=0.00023  Score=46.26  Aligned_cols=70  Identities=16%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-----------C--CCCeEEEEe--CCEEEEEEc
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-----------S--SPDFQIHTF--STKSILIMR  194 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-----------~--~~~~~~~~~--~~~~~l~i~  194 (283)
                      .....+.+|++++|.|.++|..  .-.+.|++.  ++.      +.           +  ..++.+..+  .....|.|.
T Consensus         7 SG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~   86 (109)
T d2ck0h1           7 SGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMN   86 (109)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEeccc
Confidence            3445788999999999999853  346788874  211      11           0  125666665  345679999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy14060        195 QVFMEDSGVFAVIAE  209 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~  209 (283)
                      ++..+|++.|+|...
T Consensus        87 sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          87 NLKTEDTGIYYCVRG  101 (109)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEc
Confidence            999999999999753

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.59  E-value=0.00013  Score=48.05  Aligned_cols=60  Identities=8%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.          ..+         ....++.....+....|.|.+++++|+|.|.|.+..
T Consensus        12 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          12 VAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecC
Confidence            55688999999875432  222          111         124566666777899999999999999999997654


Q ss_pred             c
Q psy14060        119 Y  119 (283)
Q Consensus       119 ~  119 (283)
                      .
T Consensus        92 ~   92 (109)
T d1w72l1          92 S   92 (109)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=48.27  Aligned_cols=71  Identities=11%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEec------CC----------CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI------TS----------SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~------~~----------~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      ....+.+|++++|.|.++|..  .-.+.|++.  ++.+      ..          ..++.+..+.  +...|.|.++..
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence            345678899999999999863  346889874  2211      11          1345565543  356799999999


Q ss_pred             CCCEEEEEEEEeC
Q psy14060        199 EDSGVFAVIAENR  211 (283)
Q Consensus       199 ~d~G~Y~C~a~n~  211 (283)
                      +|++.|+|.....
T Consensus        88 eDtAvYyCAr~~~  100 (116)
T d7fabh1          88 ADTAVYYCARNLI  100 (116)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccceEEEeeeecC
Confidence            9999999976443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00055  Score=45.06  Aligned_cols=72  Identities=13%  Similarity=0.138  Sum_probs=50.5

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  .-.+.|+|.  |+.      +. .          ..++.+..+  .+...|.|.+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            34556788899999999999864  346889874  211      11 1          134555554  3445799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      ++.+|++.|+|....
T Consensus        85 L~~eDtAvYYCAr~~   99 (117)
T d1um5h1          85 LTSEDSAVYYCARSS   99 (117)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEEeecc
Confidence            999999999997543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00015  Score=48.27  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  ...+.|+|.  |+.      +. .          ..++.+..+  .+...|.|.+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            33445678899999999998753  356889874  221      11 1          135555543  3355799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      +..+|++.|+|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999864

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.58  E-value=0.00014  Score=48.21  Aligned_cols=74  Identities=7%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEec------C-CC---------CCeEEEEeCCEEEEEEcCCC
Q psy14060        136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------T-SS---------PDFQIHTFSTKSILIMRQVF  197 (283)
Q Consensus       136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~------~-~~---------~~~~~~~~~~~~~l~i~~~~  197 (283)
                      +...|..+.+.+|++++|.|...+.....+.|||.  |..+      . ..         .++...... ...|.|....
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~~l~l~~~~   82 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT-DTELRLQVAN   82 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE-TTEEEEEEES
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccc-ccEEEEecCC
Confidence            34556677889999999999987655568999985  2211      0 00         111111111 1357778888


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|.|.+..
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            8999999998653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=0.00014  Score=47.92  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=48.8

Q ss_pred             CceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEec------C--------C--CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFPI------T--------S--SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~~------~--------~--~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      ....+.+|++++|.|.++|...  -.+.|+|.  |+.+      .        +  ..++.+..+.  +...|.|.++..
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            3456788999999999998643  45788874  2211      1        1  2356666543  346799999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|++.|+|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00055  Score=45.00  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC---------C--CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT---------S--SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~---------~--~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +.         +  ..++.+..+.  +...|.|.++
T Consensus         7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L   86 (117)
T d1jnhb1           7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL   86 (117)
T ss_dssp             CCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence            3445678899999999999864  346889873  211      11         1  2356666553  3457999999


Q ss_pred             CCCCCEEEEEEEE
Q psy14060        197 FMEDSGVFAVIAE  209 (283)
Q Consensus       197 ~~~d~G~Y~C~a~  209 (283)
                      ..+|++.|+|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.57  E-value=3.8e-05  Score=51.37  Aligned_cols=60  Identities=15%  Similarity=0.129  Sum_probs=40.3

Q ss_pred             eeecCcEEEEEEEccCc--cce--E--------Ee---------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV--R--------KI---------TATETTEME--HKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~--~--------~~---------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|...+..  .+.  +        .+         ....++...  ......+|.|.+++++|+|.|.|.+
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~   91 (114)
T d2cdea1          12 ILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVV   91 (114)
T ss_dssp             EETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceee
Confidence            55678999999987544  122  0        10         111233332  2346889999999999999999988


Q ss_pred             Eec
Q psy14060        117 RKY  119 (283)
Q Consensus       117 ~n~  119 (283)
                      ...
T Consensus        92 ~~~   94 (114)
T d2cdea1          92 SDR   94 (114)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.56  E-value=6.4e-05  Score=49.92  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             CceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------cC--------C--CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------IT--------S--SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~~--------~--~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      ....+.+|++++|.|.++|...  -.+.|++.  |+.      +.        +  ..++.+..+.  +...|.|.++..
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            3456788999999999998643  45789874  211      11        1  2356666543  356799999999


Q ss_pred             CCCEEEEEEE
Q psy14060        199 EDSGVFAVIA  208 (283)
Q Consensus       199 ~d~G~Y~C~a  208 (283)
                      +|++.|+|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999953

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.56  E-value=0.0004  Score=45.64  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--E------ecC-C----------CCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F------PIT-S----------SPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~------~~~-~----------~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      .....+.+|++++|.|.++|..  .-.+.|+|.-  +      .|. .          ..++.+..+  .+...|.+.++
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L   86 (117)
T d1jpth1           7 SGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL   86 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc
Confidence            3445788899999999999853  4578888742  1      111 1          134556554  34567999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      ..+|++.|+|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (117)
T d1jpth1          87 RAEDTAVYYCARDT  100 (117)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCceEEEEeecC
Confidence            99999999997543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.56  E-value=0.00011  Score=48.88  Aligned_cols=58  Identities=7%  Similarity=0.067  Sum_probs=41.1

Q ss_pred             eeecCcEEEEEEEccCc--------cce-------------------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--------EIV-------------------RKITATETTEMEHKGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--------~i~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      +.+|++++|.|...+..        .+.                   .......++.....+....|.|.+++++|+|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~Y   92 (113)
T d1q9ra1          13 VSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVY   92 (113)
T ss_dssp             EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEE
Confidence            56788999999765321        111                   111223466666777889999999999999999


Q ss_pred             EEEEE
Q psy14060        113 AITER  117 (283)
Q Consensus       113 ~C~a~  117 (283)
                      .|.+.
T Consensus        93 yCA~~   97 (113)
T d1q9ra1          93 YCKQS   97 (113)
T ss_dssp             EEEEC
T ss_pred             Eeccc
Confidence            99653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.55  E-value=0.00018  Score=47.58  Aligned_cols=59  Identities=7%  Similarity=0.084  Sum_probs=38.8

Q ss_pred             eeecCcEEEEEEEccCc-cce----------EEe-------------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------RKI-------------TATETTEMEHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~~~-------------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++++|.|...+.. .+.          +.+             ................|.|.++.++|+|.|.|.
T Consensus        13 ~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   92 (110)
T d2aq2a1          13 AVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCA   92 (110)
T ss_dssp             ECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEe
Confidence            55688999999876432 121          111             011222333445678999999999999999997


Q ss_pred             EEe
Q psy14060        116 ERK  118 (283)
Q Consensus       116 a~n  118 (283)
                      +.+
T Consensus        93 ~~~   95 (110)
T d2aq2a1          93 SGG   95 (110)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.1e-05  Score=54.70  Aligned_cols=27  Identities=22%  Similarity=0.115  Sum_probs=23.7

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +..+|+|.+++.+|+|.|.|.+.+..+
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  112 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPG  112 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCC
Confidence            356899999999999999999987765

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.54  E-value=0.00026  Score=45.72  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=41.0

Q ss_pred             ecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC---CeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        145 AFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP---DFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...|...+|.|.+.|. |. ..++|+++|..+....   ......++.   .+.|.+..   ++...|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            3456788999999996 43 5799999999875421   111111112   22355543   44567999998864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=0.00054  Score=45.80  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------c---------CC--CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------I---------TS--SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~---------~~--~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|...  -.+.|+|.  ++.      +         .+  ..++.+..+.  +...|.+.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s   85 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN   85 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence            334456788999999999998543  35778763  111      1         11  2356666653  456799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      ++.+|++.|+|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999998654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=8.2e-05  Score=49.01  Aligned_cols=59  Identities=8%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   .          ...|+.+..  ..+...|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            3477899999999999865    111          122   1          123555553  3567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        90 tAvYYCAr   97 (117)
T d1c5db1          90 TAIYFCTR   97 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999953

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.54  E-value=0.00011  Score=48.88  Aligned_cols=58  Identities=9%  Similarity=0.022  Sum_probs=41.6

Q ss_pred             eeecCcEEEEEEEccCc-------cce----------E---------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-------EIV----------R---------KITATETTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-------~i~----------~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      +.+|++|+|.|...+..       .+.          .         ......++.....+....|.|.++..+|+|.|.
T Consensus        14 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   93 (113)
T d1n4xl_          14 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYY   93 (113)
T ss_dssp             ECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEE
Confidence            56788999999875321       121          1         112245666666778899999999999999999


Q ss_pred             EEEE
Q psy14060        114 ITER  117 (283)
Q Consensus       114 C~a~  117 (283)
                      |...
T Consensus        94 Ca~~   97 (113)
T d1n4xl_          94 CFQG   97 (113)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.53  E-value=0.00015  Score=47.57  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|..  +.      +. .          ..++.+..+.  +...|.|.++.
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            445678999999999999853  3467888742  11      11 1          1355666543  34579999999


Q ss_pred             CCCCEEEEEEE
Q psy14060        198 MEDSGVFAVIA  208 (283)
Q Consensus       198 ~~d~G~Y~C~a  208 (283)
                      .+|++.|+|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4e-05  Score=51.17  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=25.3

Q ss_pred             CEEEEE--cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         87 TTEMEH--KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        87 ~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ++.+..  ..+..+|+|.+++.+|+|.|.|.+...
T Consensus        64 R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             eEEEEEECCCCEEEEEEccCCcccCceEEEEEECC
Confidence            455432  456789999999999999999976443

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.52  E-value=0.00042  Score=46.20  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=49.0

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------c-CC----------CCCeEEEEe--CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------I-TS----------SPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~-~~----------~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ....+.+|+++.|.|.++|..  .-.+.|+|..  +.      | ..          ..++.+..+  .+...|.++++.
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            345678899999999999864  3468898742  11      1 11          134556554  345679999999


Q ss_pred             CCCCEEEEEEEE
Q psy14060        198 MEDSGVFAVIAE  209 (283)
Q Consensus       198 ~~d~G~Y~C~a~  209 (283)
                      .+|++.|+|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.52  E-value=0.00013  Score=48.34  Aligned_cols=57  Identities=9%  Similarity=0.090  Sum_probs=40.8

Q ss_pred             eeecCcEEEEEEEccCc-------cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-------EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYA  113 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-------~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  113 (283)
                      +.+|++|+|.|...+..       .+.          +.+         ....++.....+....|.|.+++++|+|.|.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYY   92 (112)
T d1ncwl1          13 VTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYY   92 (112)
T ss_dssp             EETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEE
Confidence            66788999999865321       121          111         1235666666778899999999999999999


Q ss_pred             EEE
Q psy14060        114 ITE  116 (283)
Q Consensus       114 C~a  116 (283)
                      |..
T Consensus        93 C~~   95 (112)
T d1ncwl1          93 CWQ   95 (112)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            954

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.3e-05  Score=51.77  Aligned_cols=29  Identities=14%  Similarity=-0.021  Sum_probs=23.9

Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ....+..+|+|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~   96 (116)
T d1xeda_          68 FPENGTFVVNIAQLSQDDSGRYKCGLGIN   96 (116)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEESCG
T ss_pred             eCCCCEEEEEEhhhCcCCCEEEEEEEEcC
Confidence            34456789999999999999999977544

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.51  E-value=0.00035  Score=46.05  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|+++.|.|.++|..  .-.+.|+|.  |+.      +. .          ..++.+..+.  +...|.|.++
T Consensus         7 SG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (118)
T d2fbjh1           7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (118)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecccccc
Confidence            3445688899999999999853  345788864  211      11 1          1345565543  3457999999


Q ss_pred             CCCCCEEEEEEEEeCCc
Q psy14060        197 FMEDSGVFAVIAENRGG  213 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~~g  213 (283)
                      +.+|++.|+|......+
T Consensus        87 ~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          87 RSEDTALYYCARLHYYG  103 (118)
T ss_dssp             CGGGCEEEEEEEEETTT
T ss_pred             CCCcceEEEeeEecCCC
Confidence            99999999998765443

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.50  E-value=6e-05  Score=49.66  Aligned_cols=58  Identities=7%  Similarity=0.086  Sum_probs=41.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.+++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD   90 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence            477789999999999865    222          121   1 1          23445543  3568899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (117)
T d1jpth1          91 TAVYYCAR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.50  E-value=9.8e-05  Score=48.75  Aligned_cols=69  Identities=14%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             CCceeecCCCcEEEEEEEeee--cCCEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      .....+.+|++++|.|.++|.  ....+.|++.  ++.      +. .          ..++.+..+  .+...|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l   86 (115)
T d1f3dh1           7 SGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSL   86 (115)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeec
Confidence            344567889999999999885  3346888874  211      11 1          124555543  33457999999


Q ss_pred             CCCCCEEEEEEE
Q psy14060        197 FMEDSGVFAVIA  208 (283)
Q Consensus       197 ~~~d~G~Y~C~a  208 (283)
                      ..+|++.|+|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999964

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00013  Score=48.07  Aligned_cols=72  Identities=7%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-----------CCCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-----------SSPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  .-.+.|+|.  |+.      |.           -..++.+..+.  +...|.|.+
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~   85 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence            33445678899999999999853  345788874  211      11           12345565543  345799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      +..+|++.|+|....
T Consensus        86 L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cCcCcceEEEEeEcC
Confidence            999999999998644

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.0002  Score=45.48  Aligned_cols=62  Identities=13%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+..++|.|.+.|. |. ..++|+++|..+.... ......+.     .+.|.+.   .++...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            34578999999996 54 5899999998875432 22222211     2245554   345678999998764

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=9.8e-05  Score=49.14  Aligned_cols=69  Identities=10%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEec------C---------C--CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI------T---------S--SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~------~---------~--~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|.  |+.+      .         +  ..++.+..+.  +...|.|.++.
T Consensus         8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            344678899999999998753  335888874  2211      1         0  1345565533  34579999999


Q ss_pred             CCCCEEEEEEEE
Q psy14060        198 MEDSGVFAVIAE  209 (283)
Q Consensus       198 ~~d~G~Y~C~a~  209 (283)
                      .+|++.|+|...
T Consensus        88 ~eDsAvYYCA~~   99 (119)
T d1qnzh_          88 SDDSAVYYCAIH   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccceeEEEEEEe
Confidence            999999999653

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.48  E-value=8.8e-05  Score=49.22  Aligned_cols=59  Identities=7%  Similarity=0.011  Sum_probs=42.6

Q ss_pred             CCeeeecCcEEEEEEEccCc----cce----------EEe---e----------cCCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         57 GKEIHTAKSQQVQKEKKGDK----EIV----------RKI---T----------ATETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        57 ~~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------~~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      +..+.+|++++|.|.+.|..    .+.          .++   .          ...|+.+..  ..+...|.|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            33477899999999999865    122          222   1          124666654  456789999999999


Q ss_pred             CCeEEEEE
Q psy14060        108 DDGYYAIT  115 (283)
Q Consensus       108 D~G~Y~C~  115 (283)
                      |++.|.|.
T Consensus        89 DtA~YYCA   96 (120)
T d1dn0b1          89 DTAVYYCA   96 (120)
T ss_dssp             GCEEEEEE
T ss_pred             cccEEEEE
Confidence            99999994

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=7.7e-05  Score=49.29  Aligned_cols=61  Identities=10%  Similarity=0.099  Sum_probs=41.1

Q ss_pred             eeeecCcEEEEEEEccCc----cce-----------EEee-----------cCCCEEEEE--cCCEEEEEEccCCCCCCe
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV-----------RKIT-----------ATETTEMEH--KGKIQERVVDASELDDDG  110 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~-----------~~~~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D~G  110 (283)
                      .+.+|++++|.|...+..    ...           ..+.           ..+|+.+..  ..+...|+|.+++.+|+|
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa   85 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG   85 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence            367789999999987532    111           0110           123455543  356899999999999999


Q ss_pred             EEEEEEEec
Q psy14060        111 YYAITERKY  119 (283)
Q Consensus       111 ~Y~C~a~n~  119 (283)
                      .|.|...+.
T Consensus        86 ~YyCa~~~~   94 (110)
T d1u9ka_          86 LYRCVIYHP   94 (110)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeCC
Confidence            999976544

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=0.00035  Score=45.07  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             CCCcEEEEEEEeeec--CCEEEEEeCC--Eec------C---------C--CCCeEEEEe--CCEEEEEEcCCCCCCCEE
Q psy14060        147 EQDQARFEVEFDGDP--LPTIKWFRED--FPI------T---------S--SPDFQIHTF--STKSILIMRQVFMEDSGV  203 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p--~~~~~W~k~~--~~~------~---------~--~~~~~~~~~--~~~~~l~i~~~~~~d~G~  203 (283)
                      +|++++|.|.++|..  .-.+.|+|..  +.+      .         +  ..++.+..+  .+...|+|.++..+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            488999999999854  3468898742  211      1         1  134555433  334579999999999999


Q ss_pred             EEEEEEeC
Q psy14060        204 FAVIAENR  211 (283)
Q Consensus       204 Y~C~a~n~  211 (283)
                      |+|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99986443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=0.00011  Score=48.47  Aligned_cols=59  Identities=7%  Similarity=0.041  Sum_probs=42.3

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +.+|++|+|.|......  .+.          +.+         ....++.....+....|.|.+++++|+|.|.|.+..
T Consensus        11 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            56788999999875322  222          111         113466777677789999999999999999997653

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00027  Score=47.03  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEec------C-C----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI------T-S----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~~------~-~----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  ...+.|+|.  |+.+      . .          ..++.+..+  .+...|.|.+
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            34456788999999999998753  357889874  2211      1 1          124555543  3455799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      +..+|++.|+|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1j05b_          86 LTSEDTAVYYCAPF   99 (121)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcCcceEEEeEee
Confidence            99999999999754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00011  Score=49.15  Aligned_cols=60  Identities=8%  Similarity=0.042  Sum_probs=40.2

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe------------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI------------TATETTEMEH--KGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~------------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      +.+|++|+|.|...+.-   .+.          +.+            ....++....  ......|+|.+++.+|+|.|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   91 (116)
T d1tvda_          12 VASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATY   91 (116)
T ss_dssp             EETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccc
Confidence            66788999999875432   221          111            1224555532  34568999999999999999


Q ss_pred             EEEEEec
Q psy14060        113 AITERKY  119 (283)
Q Consensus       113 ~C~a~n~  119 (283)
                      .|.....
T Consensus        92 yCa~~~~   98 (116)
T d1tvda_          92 YCAFTLP   98 (116)
T ss_dssp             EEEEECT
T ss_pred             eeeEecC
Confidence            9976543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00029  Score=47.18  Aligned_cols=29  Identities=3%  Similarity=-0.063  Sum_probs=24.0

Q ss_pred             EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         91 EHKGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +...+...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~~~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          71 KLGNESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EECSSEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             ECCCCeEEEEECCCCcccCeEEEEEEecc
Confidence            44567889999999999999999976543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.45  E-value=0.0012  Score=43.62  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cCC-------------CCCeEEEEe--CCEEEEEEcC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------ITS-------------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~~-------------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|.  |+.      +..             ..++.+..+  .+...|.|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            344678899999999999863  356889874  221      110             125556554  3346799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      ++.+|++.|+|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999997543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.45  E-value=0.00035  Score=44.92  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCC---eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        147 EQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPD---FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .++..+|.|.+.|. | ...+.|+++|..+..+..   .....++.........+...+...|+|.+.+..-
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence            45677899999986 4 358999999987654211   1111112222222233455667799999988653

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.45  E-value=0.00028  Score=46.43  Aligned_cols=69  Identities=14%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cCC----------CCCeEEEEe--CCEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------ITS----------SPDFQIHTF--STKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~~----------~~~~~~~~~--~~~~~l~i~~~~~  198 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|.  |+.      +..          ..++.+..+  .+...|.|.++..
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            345678899999999999864  346889874  221      111          123455543  3445799999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|++.|+|...
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.45  E-value=9.1e-05  Score=49.24  Aligned_cols=59  Identities=8%  Similarity=0.056  Sum_probs=39.8

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      +.+|++|+|.|...+..   .+.          +.|         ....++.+..+.....|.|.++.++|+|.|.|...
T Consensus        10 ~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   89 (112)
T d1kgcd1          10 SNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILP   89 (112)
T ss_dssp             EETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECC
T ss_pred             ECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEe
Confidence            66788999999886543   222          111         11123333444567889999999999999999664


Q ss_pred             e
Q psy14060        118 K  118 (283)
Q Consensus       118 n  118 (283)
                      .
T Consensus        90 ~   90 (112)
T d1kgcd1          90 L   90 (112)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.2e-05  Score=51.70  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             eeecCcEEEEEEEccCc-c-----ce-----EE----------e--ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-E-----IV-----RK----------I--TATETTEMEHKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~-----i~-----~~----------~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      ..+|++++|.|...... .     +.     ..          .  ....+...... +..+|.|.+++.+|+|.|.|.+
T Consensus         6 ~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~-g~~sL~I~~v~~~D~G~Y~C~V   84 (105)
T d1dr9a1           6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSIVILALRPSDEGTYECVV   84 (105)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-TTTEEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC-CcEEEEECcCChHHCeEEEEEE
Confidence            56788999999765322 1     11     00          0  11234444322 3568999999999999999988


Q ss_pred             Eec
Q psy14060        117 RKY  119 (283)
Q Consensus       117 ~n~  119 (283)
                      .+.
T Consensus        85 ~~~   87 (105)
T d1dr9a1          85 LKY   87 (105)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00058  Score=45.45  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC---------C--CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT---------S--SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~---------~--~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ..-.+.+|+++.|.|.++|..  ...+.|+|.  ++.      +.         +  ..++.+..+.  +...|+|.+++
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            345678899999999998853  346788874  211      11         1  1356666543  45679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.1e-05  Score=52.20  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=21.3

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      +..+|.|.+++.+|+|.|.|.....
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEec
Confidence            4568999999999999999987543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=9.3e-05  Score=48.27  Aligned_cols=82  Identities=12%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             CCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe--EEEEeC-C---EEEEEEcCCCCCCCEE
Q psy14060        132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF--QIHTFS-T---KSILIMRQVFMEDSGV  203 (283)
Q Consensus       132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~--~~~~~~-~---~~~l~i~~~~~~d~G~  203 (283)
                      .+|.+...+.......+..++|.|.+.|. |. ..+.|+++|..+......  .....+ .   .+.|.|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            35555443322223346679999999985 43 479999999887643110  111111 1   2345555433333457


Q ss_pred             EEEEEEeCCc
Q psy14060        204 FAVIAENRGG  213 (283)
Q Consensus       204 Y~C~a~n~~g  213 (283)
                      |+|.+.+...
T Consensus        84 ytC~V~H~~~   93 (102)
T d1rzfl2          84 YSCQVTHEGS   93 (102)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCc
Confidence            9999998753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.44  E-value=7.9e-05  Score=49.79  Aligned_cols=60  Identities=7%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             eeecCcEEEEEEEccCc---cce----------EEe----------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK---EIV----------RKI----------TATETTEMEH--KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~---~i~----------~~~----------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++|+|.|...+..   .+.          ..+          ....++.+..  ......|.|.+++++|+|.|.|
T Consensus        11 ~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   90 (115)
T d1fo0a_          11 VMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC   90 (115)
T ss_dssp             EETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccc
Confidence            66788999999875432   122          111          0112344432  3457899999999999999999


Q ss_pred             EEEec
Q psy14060        115 TERKY  119 (283)
Q Consensus       115 ~a~n~  119 (283)
                      .....
T Consensus        91 a~~~~   95 (115)
T d1fo0a_          91 AMRGD   95 (115)
T ss_dssp             EEECC
T ss_pred             eeecC
Confidence            76543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.44  E-value=9.3e-05  Score=48.74  Aligned_cols=59  Identities=8%  Similarity=0.026  Sum_probs=41.9

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e----------cCCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T----------ATETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------~~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   .          ...|+.+.  ...+...|.|++++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            3477899999999999865    111          222   1          12344554  34567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        90 TAvYYCAr   97 (116)
T d1a2yb_          90 TARYYCAR   97 (116)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.43  E-value=0.00025  Score=47.14  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=49.0

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|.  |+.      |. .          ..++.+..+  .+...|.|.++.
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            345678899999999999853  345788874  211      11 1          124556553  334579999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy14060        198 MEDSGVFAVIAENR  211 (283)
Q Consensus       198 ~~d~G~Y~C~a~n~  211 (283)
                      .+|++.|+|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          88 SEDTAMYYCVRHEY  101 (123)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCcccceeEEecCC
Confidence            99999999976544

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.00032  Score=46.89  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             ceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      .-.+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            34577899999999999853  346889874  211      11 1          1356666543  345699999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|++.|+|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00066  Score=45.22  Aligned_cols=70  Identities=13%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|...  -.+.|+|.  ++.      +. .          ..++.+..+  .+...|.+.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence            344567888999999999998643  35788873  211      11 1          235556554  3456799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      +..+|.+.|+|..
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.41  E-value=9.4e-05  Score=49.06  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=43.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e----------cCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T----------ATETTEMEHK--GKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------~~~~~~~~~~--~~~~~L~i~~~~~~D~  109 (283)
                      .|.+|++++|.|.+.|..    .+.          .++   .          ...|+.+..+  .+...|.|.+++.+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            478899999999998865    122          112   1          1246666543  5678999999999999


Q ss_pred             eEEEEEEEe
Q psy14060        110 GYYAITERK  118 (283)
Q Consensus       110 G~Y~C~a~n  118 (283)
                      +.|.|....
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999996544

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.41  E-value=0.00019  Score=48.30  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee---c--------C---------C--CCCeEEEEe--CCEEEEE
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I--------T---------S--SPDFQIHTF--STKSILI  192 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~---~--------~---------~--~~~~~~~~~--~~~~~l~  192 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|..  +.   +        .         +  ..++.+..+  .....|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            345678899999999999853  3568898742  11   1        0         0  124555543  3456799


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy14060        193 MRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       193 i~~~~~~d~G~Y~C~a~  209 (283)
                      |.++..+|++.|+|...
T Consensus        88 i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eecccccceeEEEEEEE
Confidence            99999999999999864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=9e-05  Score=48.62  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe---EEEEe-CC---EEEEEEcCCCCCCCEE
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF---QIHTF-ST---KSILIMRQVFMEDSGV  203 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~---~~~~~-~~---~~~l~i~~~~~~d~G~  203 (283)
                      +|.+...+.......++.++|.|.+.|. |. ..+.|+++|..+......   ..... +.   .+.|.|..-.......
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            4444332223334456789999999885 43 689999999887542110   01111 11   2356666554455668


Q ss_pred             EEEEEEeCC
Q psy14060        204 FAVIAENRG  212 (283)
Q Consensus       204 Y~C~a~n~~  212 (283)
                      |+|.+.+..
T Consensus        84 ytC~V~H~~   92 (105)
T d1fp5a2          84 FICRAVHEA   92 (105)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998864

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00012  Score=47.68  Aligned_cols=70  Identities=9%  Similarity=0.023  Sum_probs=42.9

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..++.++|.|.+.|. |. ..|.|.+++..............+.   .+.|.|..-... .|.|+|.+.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA   92 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence            457899999999985 43 5899988775432111111112221   235777655543 5789999998765443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.40  E-value=0.00056  Score=45.61  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.+.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            44556788999999999999853  345788874  211      11 1          1345565543  455799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      ++.+|++.|+|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999964

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.40  E-value=0.00027  Score=47.45  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe---------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI---------TATETTEMEH--KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~---------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++++|.|...+..    .+.          ..+         ...+++....  ..+...|.|.+++++|+|.|.|
T Consensus        13 v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyC   92 (120)
T d1hxma1          13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYC   92 (120)
T ss_dssp             EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeec
Confidence            66788999999987643    122          111         1124555443  3567999999999999999999


Q ss_pred             EEEe
Q psy14060        115 TERK  118 (283)
Q Consensus       115 ~a~n  118 (283)
                      ....
T Consensus        93 A~~~   96 (120)
T d1hxma1          93 ACDT   96 (120)
T ss_dssp             EEEC
T ss_pred             Cccc
Confidence            7543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.40  E-value=0.0002  Score=47.63  Aligned_cols=60  Identities=7%  Similarity=0.061  Sum_probs=42.1

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            3477899999999999865    121          111   11           23455543  356788999999999


Q ss_pred             CCeEEEEEEE
Q psy14060        108 DDGYYAITER  117 (283)
Q Consensus       108 D~G~Y~C~a~  117 (283)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (123)
T d1mqkh_          90 DTAMYYCVRH   99 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cccceeEEec
Confidence            9999999654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.39  E-value=0.00012  Score=48.20  Aligned_cols=58  Identities=9%  Similarity=0.027  Sum_probs=41.5

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe-------------ecCCCEEEEE--cCCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI-------------TATETTEMEH--KGKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~-------------~~~~~~~~~~--~~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|++++|.|.+.|..    .+.          .++             ....|+.+..  ..+...|.|++++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            467799999999999864    111          111             1124555543  45688999999999999


Q ss_pred             eEEEEEE
Q psy14060        110 GYYAITE  116 (283)
Q Consensus       110 G~Y~C~a  116 (283)
                      +.|.|..
T Consensus        91 AvYyCAr   97 (116)
T d7fabh1          91 AVYYCAR   97 (116)
T ss_dssp             EEEEEEE
T ss_pred             eEEEeee
Confidence            9999964

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.39  E-value=0.00042  Score=45.98  Aligned_cols=68  Identities=21%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             ceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEe--CCEEEEEEcCCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTF--STKSILIMRQVFM  198 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~--~~~~~l~i~~~~~  198 (283)
                      ...+.+|++++|.|.++|..  .-.+.|+|..  +.      |. .          ..++.+..+  .+...|.|.++..
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            34678899999999999853  3457888642  21      11 1          135556654  3456799999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|++.|+|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00013  Score=48.13  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            366789999999998754    122          111   1           123555543  3567889999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999953

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.38  E-value=0.00011  Score=48.98  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         95 KIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      ....|.|.+++++|+|.|.|.+...
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceeEEEECCCCHhHCEEEEEEecCC
Confidence            5678999999999999999987643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0014  Score=39.27  Aligned_cols=57  Identities=5%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             cCCCcEEEEEEEeeecC--CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        146 FEQDQARFEVEFDGDPL--PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ..|..+.|.|.....+.  .--+|+|+|+.+.....-     +....+.|..  .+++|.|.|+.-
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEc
Confidence            45788999999976433  347899999998754221     1233456654  779999999964

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.38  E-value=0.0007  Score=45.12  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|.  ++.      +. .          ..++.+..+.  +...|.|.++.
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            345678899999999999853  346788874  211      11 1          1345565543  34579999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|+|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.38  E-value=0.00029  Score=46.48  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC---------C--CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT---------S--SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|..  .-.+.|+|.  |+.      +.         +  ..++.+..+  .+...|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~   85 (118)
T d1ct8b1           6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence            34456788899999999999853  346788774  221      11         1  124555543  3456799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      ++.+|.+.|+|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            99999999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.38  E-value=0.00019  Score=46.67  Aligned_cols=60  Identities=8%  Similarity=0.106  Sum_probs=42.4

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-------------CCCEEEEE--cCCEEEEEEccCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-------------TETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-------------~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..             ..|+.+..  ..+...|.|++++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            3477899999999999855    121          121   10             12555554  3567899999999


Q ss_pred             CCCCeEEEEEEE
Q psy14060        106 LDDDGYYAITER  117 (283)
Q Consensus       106 ~~D~G~Y~C~a~  117 (283)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.38  E-value=0.00029  Score=47.53  Aligned_cols=59  Identities=10%  Similarity=0.102  Sum_probs=40.8

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEee--------------cCCCEEEEE--cCCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKIT--------------ATETTEMEH--KGKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~~--------------~~~~~~~~~--~~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++++|.|.+.|..    .+.          +.+.              ...++.+..  ......|.|.++.++|+
T Consensus        13 ~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Ds   92 (123)
T d1hxmb1          13 KTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDI   92 (123)
T ss_dssp             EETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccC
Confidence            44578999999998643    222          1110              124566654  34578899999999999


Q ss_pred             eEEEEEEEe
Q psy14060        110 GYYAITERK  118 (283)
Q Consensus       110 G~Y~C~a~n  118 (283)
                      |.|.|....
T Consensus        93 a~YyCA~~~  101 (123)
T d1hxmb1          93 ATYYCALWE  101 (123)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeeeC
Confidence            999997643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00038  Score=46.70  Aligned_cols=73  Identities=8%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             ecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEc
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMR  194 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~  194 (283)
                      .......+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.+.
T Consensus         4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            344556788999999999999853  346888874  211      10 0          1356666543  34569999


Q ss_pred             CCCCCCCEEEEEEEEe
Q psy14060        195 QVFMEDSGVFAVIAEN  210 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a~n  210 (283)
                      ++..+|++.|+|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999997643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00011  Score=48.54  Aligned_cols=58  Identities=12%  Similarity=0.050  Sum_probs=40.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|++.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eD   90 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCc
Confidence            366789999999999865    122          122   1           012445543  3567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (117)
T d1mfah1          91 SAVYYCTR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999953

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.37  E-value=0.00017  Score=47.87  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             CceeecCCCcEEEEEEEeeecC----CEEEEEeC--CEe------cCC----------CCCeEEEEeC--CEEEEEEcCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDPL----PTIKWFRE--DFP------ITS----------SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p~----~~~~W~k~--~~~------~~~----------~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      ....+.+|++++|.|.++|...    ..+.|+|.  |+.      +..          ..++.+..+.  +...|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            3446788999999999998532    35789875  211      111          1355565543  3467999999


Q ss_pred             CCCCCEEEEEEEE
Q psy14060        197 FMEDSGVFAVIAE  209 (283)
Q Consensus       197 ~~~d~G~Y~C~a~  209 (283)
                      +.+|++.|+|...
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00024  Score=46.55  Aligned_cols=71  Identities=10%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             ecCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEc
Q psy14060        138 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMR  194 (283)
Q Consensus       138 ~~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~  194 (283)
                      .......+.+|+++.|.|.++|..  .-.+.|+|.  |+.      |. .          ..++.+..+.  +...|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            344556788999999999999853  345788873  211      11 1          1356665543  34579999


Q ss_pred             CCCCCCCEEEEEEE
Q psy14060        195 QVFMEDSGVFAVIA  208 (283)
Q Consensus       195 ~~~~~d~G~Y~C~a  208 (283)
                      ++..+|.+.|+|..
T Consensus        85 sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDSAVYYCAN   98 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEcc
Confidence            99999999999974

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.36  E-value=4.2e-05  Score=51.23  Aligned_cols=60  Identities=5%  Similarity=-0.012  Sum_probs=38.9

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEME--HKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|++|+|.|......  .+.          +.+         ....++.+.  .......|.|.+++++|+|.|.|.+
T Consensus        13 v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   92 (115)
T d1lp9e1          13 LTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCAL   92 (115)
T ss_dssp             EETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEE
Confidence            66788999999987444  222          111         002233332  2334677999999999999999976


Q ss_pred             Eec
Q psy14060        117 RKY  119 (283)
Q Consensus       117 ~n~  119 (283)
                      ...
T Consensus        93 ~~~   95 (115)
T d1lp9e1          93 FLA   95 (115)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.36  E-value=8.3e-05  Score=49.04  Aligned_cols=57  Identities=5%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD   90 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence            367788999999999855    122          122   1           123555543  3567899999999999


Q ss_pred             CeEEEEE
Q psy14060        109 DGYYAIT  115 (283)
Q Consensus       109 ~G~Y~C~  115 (283)
                      ++.|.|.
T Consensus        91 tAvYYCA   97 (118)
T d1nlbh1          91 TATYFCA   97 (118)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEe
Confidence            9999994

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.36  E-value=0.00084  Score=45.01  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             eeecCCCcEEEEEEEeeecC----CEEEEEeC--CEec-------C-------C--CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        143 CRAFEQDQARFEVEFDGDPL----PTIKWFRE--DFPI-------T-------S--SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~----~~~~W~k~--~~~~-------~-------~--~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      ..+.+|++++|.|.++|...    ..+.|+|.  ++.+       .       +  ..++.+..+.  ....|.|.++..
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            46778999999999987532    25679864  2111       0       1  2356666543  356799999999


Q ss_pred             CCCEEEEEEEE
Q psy14060        199 EDSGVFAVIAE  209 (283)
Q Consensus       199 ~d~G~Y~C~a~  209 (283)
                      +|++.|+|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.36  E-value=0.0002  Score=47.54  Aligned_cols=59  Identities=10%  Similarity=0.062  Sum_probs=38.5

Q ss_pred             eeecCcEEEEEEEccCc-cce----------EEe------------ecCCCEEE-EEcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------RKI------------TATETTEM-EHKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~~~------------~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|++++|.|...+.. .+.          +.+            ....++.. ........|.|.++.++|+|.|.|.
T Consensus        11 ~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA   90 (113)
T d2ntsp1          11 KTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCA   90 (113)
T ss_dssp             EETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeee
Confidence            56788999999865433 222          111            11223322 2334568899999999999999997


Q ss_pred             EEe
Q psy14060        116 ERK  118 (283)
Q Consensus       116 a~n  118 (283)
                      +..
T Consensus        91 ~~~   93 (113)
T d2ntsp1          91 SSL   93 (113)
T ss_dssp             EES
T ss_pred             eeC
Confidence            654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.35  E-value=0.00044  Score=45.76  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEe--CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|..  +.      +. .          ..++.+..+  .+...|.|.++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            345678899999999999853  3568898742  11      11 1          124555543  334579999999


Q ss_pred             CCCCEEEEEEE
Q psy14060        198 MEDSGVFAVIA  208 (283)
Q Consensus       198 ~~d~G~Y~C~a  208 (283)
                      .+|++.|+|..
T Consensus        88 ~eDtAvYYCAr   98 (121)
T d2p49b1          88 PEDTATYYCAA   98 (121)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEeeec
Confidence            99999999975

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.35  E-value=0.00037  Score=46.19  Aligned_cols=71  Identities=11%  Similarity=0.138  Sum_probs=50.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  .-.+.|+|..  +.      +. .          ..++.+..+.  +...|.|.+
T Consensus         7 ~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            34556789999999999999854  3468898742  11      11 1          1355565543  345699999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      +..+|++.|+|...
T Consensus        87 L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          87 LRPEDTAVYYCARD  100 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999764

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00029  Score=46.43  Aligned_cols=70  Identities=11%  Similarity=0.190  Sum_probs=48.7

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------cCC-----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------ITS-----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|...  -.+.|+|.  |+.      +..           ..++.+..+  .+...|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s   85 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence            344566789999999999998643  46889874  211      111           124555543  3445799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      +..+|++.|+|..
T Consensus        86 L~~eDTAvYYCAr   98 (118)
T d2jelh1          86 LTSEDSAIYYCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceeeeEEE
Confidence            9999999999954

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00011  Score=48.17  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=41.3

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---ee-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---IT-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|++.|..    .+.          .+   |. .          ..|+.+..  ..+...|.|++++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eD   90 (116)
T d1mjuh1          11 LVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDD   90 (116)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCC
Confidence            467788999999999865    122          11   11 1          13555543  3567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (116)
T d1mjuh1          91 SAVYYCAN   98 (116)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEcc
Confidence            99999954

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.35  E-value=7.7e-05  Score=49.31  Aligned_cols=58  Identities=12%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|++.|..    .+.          .++   .           ...|+.+.  ...+...|.|.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD   90 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence            366789999999999855    111          122   1           12244443  34567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (118)
T d1ct8b1          91 SAIYYCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.00027  Score=46.77  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=49.2

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|..  .-.+.|+|..  +.      +. .          ..++.+..+.  +...|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s   85 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence            33445678899999999999854  3467888742  11      11 1          1356666543  455799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999753

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.0002  Score=47.99  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..+  .+...|.|.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            467788999999999865    122          121   11           245555443  568899999999999


Q ss_pred             CeEEEEEEEec
Q psy14060        109 DGYYAITERKY  119 (283)
Q Consensus       109 ~G~Y~C~a~n~  119 (283)
                      ++.|.|.....
T Consensus        91 TA~YYCAr~~~  101 (128)
T d2nxyd1          91 TAVYFCAGVYE  101 (128)
T ss_dssp             CEEEEEEEEEC
T ss_pred             ceEEEEeEEec
Confidence            99999975543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.34  E-value=5.4e-05  Score=50.66  Aligned_cols=60  Identities=7%  Similarity=0.028  Sum_probs=38.4

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe----------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI----------TATETTEME--HKGKIQERVVDASELDDDGYYAIT  115 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~----------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~  115 (283)
                      +.+|+.|+|.|......  .+.          +.|          ....++...  .......|.|.+++++|+|.|.|.
T Consensus        12 ~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   91 (115)
T d1j8hd1          12 VSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceee
Confidence            66788999999886433  222          111          011222222  223456899999999999999998


Q ss_pred             EEec
Q psy14060        116 ERKY  119 (283)
Q Consensus       116 a~n~  119 (283)
                      +...
T Consensus        92 ~~~~   95 (115)
T d1j8hd1          92 VSES   95 (115)
T ss_dssp             EESS
T ss_pred             ecCC
Confidence            7653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.34  E-value=0.0017  Score=42.04  Aligned_cols=68  Identities=15%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeC-CE----EEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFS-TK----SILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~-~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..|+..+|.|.+.|. |. ..+.|+++|..+...........+ ..    +.|.+.   .++...|+|.+.+..-...
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTTTEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCCCCC
Confidence            457788999999996 43 479999999987654333333222 22    235444   3445579999998754443

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=9.9e-05  Score=48.74  Aligned_cols=57  Identities=11%  Similarity=0.091  Sum_probs=40.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCc
Confidence            366789999999999866    122          222   10           13444443  4567899999999999


Q ss_pred             CeEEEEE
Q psy14060        109 DGYYAIT  115 (283)
Q Consensus       109 ~G~Y~C~  115 (283)
                      ++.|.|.
T Consensus        91 TAvYYCA   97 (118)
T d2jelh1          91 SAIYYCA   97 (118)
T ss_dssp             CEEEEEE
T ss_pred             ceeeeEE
Confidence            9999994

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.33  E-value=0.0008  Score=45.16  Aligned_cols=69  Identities=17%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|.  |+.      +. .          ..++.+..+.  ....|.|.+++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~   87 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK   87 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence            345678899999999999854  345888874  211      11 1          1345565543  34579999999


Q ss_pred             CCCCEEEEEEEE
Q psy14060        198 MEDSGVFAVIAE  209 (283)
Q Consensus       198 ~~d~G~Y~C~a~  209 (283)
                      .+|++.|+|...
T Consensus        88 ~eDTAvYYCAr~   99 (135)
T d1ieha_          88 SEDTAVYYCAKY   99 (135)
T ss_dssp             SSSCEEEEEEEB
T ss_pred             cccceeeEEEEe
Confidence            999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.33  E-value=0.0002  Score=47.67  Aligned_cols=59  Identities=8%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            367789999999999865    122          222   1 1          23455543  3567899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (122)
T d1bz7b1          91 TAIYYCTRG   99 (122)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeecC
Confidence            999999543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.00029  Score=47.66  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             ceeecCCCcEEEEEEEeeec----CCEEEEEeC--CEec------C----------CCCCeEEEEeC--CEEEEEEcCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDP----LPTIKWFRE--DFPI------T----------SSPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~--~~~~------~----------~~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ...+.+|++++|.|.++|..    ...+.|+|.  ++.+      .          -..++.+..+.  ....|.|.++.
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            45678899999999998753    236889874  2111      0          02355565543  34679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|+|....
T Consensus        89 ~eDtAvYYCAr~~  101 (132)
T d1tjgh1          89 PVDTATYFCAHRR  101 (132)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEEEec
Confidence            9999999997543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=9.5e-05  Score=49.58  Aligned_cols=59  Identities=10%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|++++.+|
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eD   90 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSED   90 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCccc
Confidence            466789999999999854    122          121   1           124555543  3568899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 tAvYYCAR~   99 (125)
T d1rihh1          91 SAVYYCARE   99 (125)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeee
Confidence            999999643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.33  E-value=0.00022  Score=46.94  Aligned_cols=69  Identities=10%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CE------ecC-C----------CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DF------PIT-S----------SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~------~~~-~----------~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|++++|.|.++|..  .-.+.|+|.  |+      .+. .          ..++.+..+.  +...|.+.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L   86 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence            3445678999999999999853  346888874  21      111 1          1345555543  4557999999


Q ss_pred             CCCCCEEEEEEE
Q psy14060        197 FMEDSGVFAVIA  208 (283)
Q Consensus       197 ~~~d~G~Y~C~a  208 (283)
                      ..+|++.|+|..
T Consensus        87 ~~eDtAvYYCAr   98 (118)
T d1nlbh1          87 KNEDTATYFCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEee
Confidence            999999999953

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.33  E-value=0.00013  Score=48.17  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|++++.+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            366789999999999854    121          111   1           134555543  4567889999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 tAvYYCA~~   99 (117)
T d1iqdb1          91 TAVYYCAVP   99 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeEc
Confidence            999999654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.32  E-value=0.00033  Score=46.70  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=46.2

Q ss_pred             ceeecCCCcEEEEEEEeeecC----CEEEEEeC--CEec-------CC---------CCCeEEEEe--CCEEEEEEcCCC
Q psy14060        142 PCRAFEQDQARFEVEFDGDPL----PTIKWFRE--DFPI-------TS---------SPDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~----~~~~W~k~--~~~~-------~~---------~~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ...+.+|++++|.|.++|...    ..+.|+|.  ++.+       ..         ..++.+..+  .+...|+|.++.
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            346788999999999987532    25789874  2211       11         124555543  234679999999


Q ss_pred             CCCCEEEEEEEE
Q psy14060        198 MEDSGVFAVIAE  209 (283)
Q Consensus       198 ~~d~G~Y~C~a~  209 (283)
                      .+|++.|+|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999743

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.32  E-value=0.00018  Score=47.89  Aligned_cols=57  Identities=11%  Similarity=0.054  Sum_probs=40.5

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|++.|..    .+.          .++   ..           ..|+.+.  ...+...|.|.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eD   90 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSD   90 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccccc
Confidence            367789999999999865    122          222   11           2344444  33567899999999999


Q ss_pred             CeEEEEE
Q psy14060        109 DGYYAIT  115 (283)
Q Consensus       109 ~G~Y~C~  115 (283)
                      ++.|.|.
T Consensus        91 TA~YYCA   97 (124)
T d2b1hh1          91 TALYYCA   97 (124)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEe
Confidence            9999994

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00014  Score=48.06  Aligned_cols=58  Identities=10%  Similarity=0.121  Sum_probs=40.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+.  ...+...|.|.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence            366789999999999865    222          122   11           1255554  33567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (119)
T d1eapb1          91 SAVYFCKR   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999943

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.32  E-value=0.0019  Score=43.33  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=49.9

Q ss_pred             CCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------cC-----------CCCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------IT-----------SSPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|+++.|.|.++|...  -.+.|+|.  ++.      +.           -..++.+..+.  +...|.+.++
T Consensus         6 sG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L   85 (133)
T d1rzfh1           6 SGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGL   85 (133)
T ss_dssp             CCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccC
Confidence            34456889999999999998543  35788873  211      10           02456666553  4567999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy14060        197 FMEDSGVFAVIAENR  211 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n~  211 (283)
                      ..+|++.|+|.....
T Consensus        86 ~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          86 RSDDTAVYYCASNSI  100 (133)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             CCCCCEEEEeeeccC
Confidence            999999999976443

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.31  E-value=0.00031  Score=46.39  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CCceeecCCCcEEEEEEEeeecC---CEEEEEeC--CEec------CC----------CCCeEEEEe--CCEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDPL---PTIKWFRE--DFPI------TS----------SPDFQIHTF--STKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p~---~~~~W~k~--~~~~------~~----------~~~~~~~~~--~~~~~l~i~~~  196 (283)
                      .....+.+|++++|.|.++|...   -.+.|+|.  ++.+      ..          ..++.+..+  .+...|.+.++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL   86 (119)
T d1ncwh1           7 SGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSV   86 (119)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccc
Confidence            34456788999999999998654   24789873  3211      11          135556554  34567999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      +.+|.+.|+|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          87 TTEDTATYYCAGLL  100 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCceEEEEeEec
Confidence            99999999997543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.00023  Score=47.82  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|++++|.|.++|..  ...+.|++.  ++.      +. .          ..++.+..+.  +...|.+.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL   86 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL   86 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence            3445678899999999998853  346888874  221      11 1          1345565543  3456889999


Q ss_pred             CCCCCEEEEEEEE
Q psy14060        197 FMEDSGVFAVIAE  209 (283)
Q Consensus       197 ~~~d~G~Y~C~a~  209 (283)
                      ..+|++.|+|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999853

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00061  Score=45.18  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|..  .-.+.|+|.  |+-      +. .          ..++.+..+  .+...|.+.+
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            34455678899999999999853  346788874  211      11 1          135556554  3456799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      ++.+|++.|+|..
T Consensus        86 L~~eDTAvYYCAR   98 (124)
T d1yedb1          86 LKSEDSAVYFCTR   98 (124)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEecc
Confidence            9999999999974

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.31  E-value=0.00031  Score=47.00  Aligned_cols=60  Identities=10%  Similarity=0.088  Sum_probs=42.0

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|++.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            3467789999999999865    121          111   11           23455543  356889999999999


Q ss_pred             CCeEEEEEEE
Q psy14060        108 DDGYYAITER  117 (283)
Q Consensus       108 D~G~Y~C~a~  117 (283)
                      |++.|.|...
T Consensus        90 DTA~YYCAr~   99 (127)
T d2fb4h1          90 DTGVYFCARD   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEEe
Confidence            9999999644

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.00019  Score=47.51  Aligned_cols=58  Identities=7%  Similarity=0.038  Sum_probs=41.3

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---ee-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---IT-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .+   +. .          ..|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            367789999999999855    122          11   11 1          23555543  4578899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (119)
T d1rz7h1          91 TAVYYCAA   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00028  Score=46.65  Aligned_cols=70  Identities=13%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cCC-----------CCCeEEEEe--CCEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------ITS-----------SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  .-.+.|+|.  |+.      +..           ..++.+..+  .+...|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            34445678899999999999863  346888874  211      111           124555543  3345799999


Q ss_pred             CCCCCCEEEEEEE
Q psy14060        196 VFMEDSGVFAVIA  208 (283)
Q Consensus       196 ~~~~d~G~Y~C~a  208 (283)
                      ++.+|.+.|+|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.31  E-value=0.0002  Score=46.94  Aligned_cols=58  Identities=7%  Similarity=0.063  Sum_probs=41.4

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..    .+.          +++   . .          ..|+.+..  ..+...|.|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            3477899999999999865    111          121   1 1          23555543  356788999999999


Q ss_pred             CCeEEEEE
Q psy14060        108 DDGYYAIT  115 (283)
Q Consensus       108 D~G~Y~C~  115 (283)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (114)
T d1indh1          90 DTALYFCA   97 (114)
T ss_dssp             GCEEEEEE
T ss_pred             cccEEEEC
Confidence            99999995

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.00042  Score=46.33  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|++++|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.|.+
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s   85 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS   85 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence            44556778899999999999853  345788774  211      11 1          1345555543  455799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      ++.+|++.|+|...
T Consensus        86 L~~eDtAvYYCAR~   99 (125)
T d1rihh1          86 LTSEDSAVYYCARE   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeee
Confidence            99999999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00015  Score=48.14  Aligned_cols=59  Identities=10%  Similarity=0.072  Sum_probs=41.9

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|.+++.+|
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eD   91 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED   91 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCc
Confidence            467889999999999865    122          121   11           24555543  3567899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        92 tA~YYCAr~  100 (122)
T d1vgeh1          92 TAVYYCARD  100 (122)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.30  E-value=0.00081  Score=44.66  Aligned_cols=58  Identities=7%  Similarity=0.009  Sum_probs=40.3

Q ss_pred             eeeecCcEEEEEEEccCc------cce----------EEee-------------cCCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK------EIV----------RKIT-------------ATETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~------~i~----------~~~~-------------~~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.|..      .+.          +++.             ...|+.+..  ..+...|.|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            467789999999987643      111          1111             124566553  345789999999999


Q ss_pred             CCeEEEEEE
Q psy14060        108 DDGYYAITE  116 (283)
Q Consensus       108 D~G~Y~C~a  116 (283)
                      |++.|.|..
T Consensus        91 DsAvYyCAr   99 (120)
T d2agjh1          91 DTATYYCAR   99 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEeeEe
Confidence            999999964

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=4.1e-05  Score=49.38  Aligned_cols=75  Identities=8%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060        133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  210 (283)
                      +|.+...+. ..+..|++|+|.|... .+...+.++|++......... .........+.|.+++..|+|.|.|....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            566655555 4578999999999863 245578888987542100000 00011234689999999999999998754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.00024  Score=47.23  Aligned_cols=59  Identities=8%  Similarity=0.049  Sum_probs=41.6

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            366789999999998754    122          121   1           123555543  4568899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.29  E-value=0.00061  Score=44.86  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cCC----------CCCeEEEEeC--CEEEEEEcCCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------ITS----------SPDFQIHTFS--TKSILIMRQVFM  198 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~~----------~~~~~~~~~~--~~~~l~i~~~~~  198 (283)
                      ....+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +..          ..++.+..+.  +...|.|.++..
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            345678899999999999864  346889874  211      111          1245565543  345799999999


Q ss_pred             CCCEEEEEEEEeC
Q psy14060        199 EDSGVFAVIAENR  211 (283)
Q Consensus       199 ~d~G~Y~C~a~n~  211 (283)
                      +|++.|+|.....
T Consensus        88 eDtA~YyCAr~~~  100 (118)
T d1lo4h1          88 EDTAIYYCARGTS  100 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEecccCC
Confidence            9999999975433

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00021  Score=47.05  Aligned_cols=58  Identities=10%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---ee-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---IT-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|++.|..    .+.          .+   +. .          ..|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            356788999999999865    111          11   11 1          24555543  3567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (117)
T d1jnhb1          91 SAVYSCSR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.29  E-value=0.00027  Score=47.32  Aligned_cols=60  Identities=10%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe--------------ecCCCEEEEE-cCCEEEEEEccCCCCCCeEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI--------------TATETTEMEH-KGKIQERVVDASELDDDGYY  112 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~--------------~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y  112 (283)
                      +.+|++|+|.|...+..  .+.          +.+              ....++.... .+....|.|.+++++|+|.|
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Y   92 (118)
T d2ij0c1          13 VKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFY   92 (118)
T ss_dssp             ECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEE
T ss_pred             EcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceE
Confidence            55688999999986543  222          111              0123455443 34567899999999999999


Q ss_pred             EEEEEec
Q psy14060        113 AITERKY  119 (283)
Q Consensus       113 ~C~a~n~  119 (283)
                      .|.+...
T Consensus        93 yCa~~~~   99 (118)
T d2ij0c1          93 VCSALAG   99 (118)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9987543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.00014  Score=47.04  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=35.5

Q ss_pred             ecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCCCeE
Q psy14060         62 TAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDDDGY  111 (283)
Q Consensus        62 ~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~  111 (283)
                      +|++++|.|.+.|..    -+.          .++   .           ...|+.+..  ..+...|.|++++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            477899999999854    122          111   1           124555543  3567899999999999999


Q ss_pred             EEEEEEe
Q psy14060        112 YAITERK  118 (283)
Q Consensus       112 Y~C~a~n  118 (283)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.29  E-value=0.00023  Score=46.99  Aligned_cols=60  Identities=8%  Similarity=0.026  Sum_probs=42.2

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---eec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---ITA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .+   +..           ..|+.+..  ..+...|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            477789999999999865    121          11   111           23455543  3567889999999999


Q ss_pred             CeEEEEEEEe
Q psy14060        109 DGYYAITERK  118 (283)
Q Consensus       109 ~G~Y~C~a~n  118 (283)
                      ++.|.|....
T Consensus        91 tAvYYCAr~~  100 (118)
T d2fbjh1          91 TALYYCARLH  100 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEeeEec
Confidence            9999996544

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00015  Score=48.17  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=40.5

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          +++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            466788999999998754    122          111   1           123555543  4567889999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 sAvYYCA~   98 (119)
T d1qnzh_          91 SAVYYCAI   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999954

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=5.1e-05  Score=51.00  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      +..+|.|.+++.+|+|.|.|.+.+..
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC--
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECC
Confidence            45689999999999999999887643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.28  E-value=0.001  Score=42.33  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe--EEEE--eCCE---EEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF--QIHT--FSTK---SILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~--~~~~--~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+..++|.|.+.|. |. ..++|+++|..+......  ....  .+..   +.|.+.   ..+...|+|.+.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~   87 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSGNH   87 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETTEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECCCC
Confidence            34578999999996 43 589999999887643221  1111  1111   234443   34445799999886543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.28  E-value=0.00025  Score=46.73  Aligned_cols=59  Identities=10%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..          ..|+.+..  ..+...|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            3467899999999999865    111          111   11          12444543  3567899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        90 tA~YyCAr   97 (118)
T d1lo4h1          90 TAIYYCAR   97 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEecc
Confidence            99999954

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.27  E-value=0.00065  Score=44.81  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             cCCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.+.+
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            34455788999999999999853  346888874  211      11 1          1345565543  456799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      ++.+|.+.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00025  Score=46.10  Aligned_cols=70  Identities=10%  Similarity=0.049  Sum_probs=39.7

Q ss_pred             cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      ..++.++|.|.+.|. |. ..|.|.+++..............+.   .+.|.|...... .+.|+|.+.+......
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            456789999999986 43 5799987764321100101111111   235777766553 4679999998765543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.27  E-value=0.0002  Score=47.30  Aligned_cols=58  Identities=12%  Similarity=0.106  Sum_probs=41.4

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+.  ...+...|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            477889999999999865    111          111   11           2455554  33578999999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (120)
T d1ad9b1          91 TAFYFCAR   98 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999954

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.27  E-value=0.00056  Score=45.83  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=38.6

Q ss_pred             eecCcEEEEEEEccCc----cce----------EEe-------------ecCCCEEEEE--cCCEEEEEEccCCCCCCeE
Q psy14060         61 HTAKSQQVQKEKKGDK----EIV----------RKI-------------TATETTEMEH--KGKIQERVVDASELDDDGY  111 (283)
Q Consensus        61 ~~g~~v~l~C~~~g~~----~i~----------~~~-------------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~  111 (283)
                      .+|++++|.|.+.+..    .+.          +.+             ....++.+..  ......|.|.++..+|+|.
T Consensus        14 ~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~   93 (120)
T d1ypzf1          14 PRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAI   93 (120)
T ss_dssp             ETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSE
T ss_pred             cCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccccee
Confidence            3578999999986542    222          111             1123444433  3457889999999999999


Q ss_pred             EEEEEEe
Q psy14060        112 YAITERK  118 (283)
Q Consensus       112 Y~C~a~n  118 (283)
                      |.|....
T Consensus        94 YyCA~~~  100 (120)
T d1ypzf1          94 YYCSYGE  100 (120)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9996543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.00017  Score=48.07  Aligned_cols=59  Identities=8%  Similarity=0.022  Sum_probs=41.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eD   90 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCc
Confidence            466789999999998754    121          111   1           123555543  3567889999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1j05b_          91 TAVYYCAPF   99 (121)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeEee
Confidence            999999643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00047  Score=44.94  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             cCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCC-eEEEEeCCE----EEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        146 FEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPD-FQIHTFSTK----SILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       146 ~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      ..+.+++|.|.+.|. |.. .++|+++|..+..... ......+..    +.|.|..-.......|+|.+.+....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEe
Confidence            345678999999984 544 6999999998764322 112222222    34555544333456799999997643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.25  E-value=7e-05  Score=48.65  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             eecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC--------C--CCCeEEEEeC--CEEEEEEcCCCCCCC
Q psy14060        144 RAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT--------S--SPDFQIHTFS--TKSILIMRQVFMEDS  201 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~--------~--~~~~~~~~~~--~~~~l~i~~~~~~d~  201 (283)
                      .+.+|++++|.|.++|..  ...+.|+|..  +.      +.        +  ..++.+..+.  ....|.|.++..+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            356899999999998753  3457898752  11      11        1  1345565543  345799999999999


Q ss_pred             EEEEEEE
Q psy14060        202 GVFAVIA  208 (283)
Q Consensus       202 G~Y~C~a  208 (283)
                      +.|+|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999965

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.25  E-value=0.00052  Score=45.83  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             CCceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCC
Q psy14060        140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQV  196 (283)
Q Consensus       140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~  196 (283)
                      .....+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..++.+..+.  +...|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL   86 (127)
T d2fx7h1           7 SGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence            3445678899999999999853  345788763  211      10 0          2355566543  4567999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy14060        197 FMEDSGVFAVIAEN  210 (283)
Q Consensus       197 ~~~d~G~Y~C~a~n  210 (283)
                      +.+|++.|+|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999998643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.24  E-value=0.00038  Score=46.42  Aligned_cols=60  Identities=7%  Similarity=0.078  Sum_probs=42.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            367799999999999865    122          121   1 1          23455543  3567899999999999


Q ss_pred             CeEEEEEEEe
Q psy14060        109 DGYYAITERK  118 (283)
Q Consensus       109 ~G~Y~C~a~n  118 (283)
                      ++.|.|....
T Consensus        91 tavYYCAr~~  100 (126)
T d1dfbh1          91 MALYYCVKGR  100 (126)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEEecc
Confidence            9999996543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.24  E-value=0.00032  Score=46.53  Aligned_cols=60  Identities=8%  Similarity=0.066  Sum_probs=42.4

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-------------CCCEEEEE--cCCEEEEEEccCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-------------TETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-------------~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..             ..|+.+..  ..+...|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            3477899999999999865    122          121   10             13555543  3567899999999


Q ss_pred             CCCCeEEEEEEE
Q psy14060        106 LDDDGYYAITER  117 (283)
Q Consensus       106 ~~D~G~Y~C~a~  117 (283)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCar~  101 (122)
T d1q9rb1          90 AEDSATYYCARD  101 (122)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEEec
Confidence            999999999653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00055  Score=43.18  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=39.1

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe-EEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF-QIHT--FST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~-~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++.++|.|.+.|. |. ..++|+++|..+...... ....  .+.   .+.|.+..-   +...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            45689999999995 43 578999999887543211 1111  111   224555433   3346999998764

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.24  E-value=0.00024  Score=46.82  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=41.0

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|.+++.+|
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD   89 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED   89 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence            466789999999999854    111          111   1           124555543  3567889999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        90 tAvYYCAr   97 (117)
T d1um5h1          90 SAVYYCAR   97 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.23  E-value=0.00045  Score=45.98  Aligned_cols=71  Identities=8%  Similarity=0.082  Sum_probs=48.8

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------c-CC----------CCCeEEEEeC--CEEEEEEcC
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------I-TS----------SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~-~~----------~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ......+.+|+++.|.|.++|...  -.+.|+|.  |+.      + ..          ..++.+..+.  +...|.+.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~   85 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS   85 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence            344567788999999999998543  35788773  111      1 11          2355565543  346799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      +..+|++.|+|...
T Consensus        86 L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          86 LKPSDTALYYCARL   99 (124)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEEEeec
Confidence            99999999999643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.22  E-value=0.00028  Score=45.29  Aligned_cols=63  Identities=13%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             CCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCeEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDFQIHT--FST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++.++|.|.+.|. |.. .+.|++++..+..........  ++.   .+.|.+..   ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            34589999999985 554 799999988765422111111  111   12355543   44557999998754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.22  E-value=0.00017  Score=47.99  Aligned_cols=59  Identities=7%  Similarity=0.084  Sum_probs=41.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e-----------cCCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T-----------ATETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-----------~~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .           ...|+.+..  ..+...|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            367799999999999754    122          222   1           123555554  3567899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.22  E-value=0.00039  Score=46.29  Aligned_cols=60  Identities=5%  Similarity=0.027  Sum_probs=42.2

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.|++++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            3478899999999998754    111          111   1 1          23555543  356889999999999


Q ss_pred             CCeEEEEEEE
Q psy14060        108 DDGYYAITER  117 (283)
Q Consensus       108 D~G~Y~C~a~  117 (283)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.21  E-value=0.00043  Score=45.74  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=41.8

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-------------CCCEEEEE--cCCEEEEEEccCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-------------TETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-------------~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..             ..|+.+..  ..+...|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            3477789999999999764    122          111   10             12555543  3567899999999


Q ss_pred             CCCCeEEEEEEE
Q psy14060        106 LDDDGYYAITER  117 (283)
Q Consensus       106 ~~D~G~Y~C~a~  117 (283)
                      .+|++.|.|...
T Consensus        90 ~eDtAvYYCA~~  101 (120)
T d1dlfh_          90 AEDTGIYYCTGI  101 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEeeEe
Confidence            999999999543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00039  Score=45.57  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=41.7

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEE--EEe--CC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQI--HTF--ST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~--~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+..++|.|.+.|. |. ..|.|+++|..+........  ...  +.   .+.|.|..-.......|+|.+.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            45689999999885 44 58999999987654211000  000  11   124555544433456899999886543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.21  E-value=4.5e-06  Score=54.16  Aligned_cols=61  Identities=11%  Similarity=0.111  Sum_probs=38.5

Q ss_pred             eeecCcEEEEEEEccCc-cce----------E---------EeecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------R---------KITATETTEM--EHKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~---------~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      |.+|++|+|.|...+.. .+.          .         ......++.+  +.......|.|.+++++|+|.|.|.+.
T Consensus         5 V~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~   84 (96)
T d1ymmd1           5 IQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATD   84 (96)
T ss_dssp             CSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEE
T ss_pred             ECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEe
Confidence            66788999999776432 111          0         0011223332  223345789999999999999999876


Q ss_pred             ecc
Q psy14060        118 KYY  120 (283)
Q Consensus       118 n~~  120 (283)
                      ...
T Consensus        85 ~~~   87 (96)
T d1ymmd1          85 TTS   87 (96)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.20  E-value=0.00015  Score=48.36  Aligned_cols=59  Identities=8%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---eec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---ITA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .|.+|++++|.|.+.|..    .+.          .+   |..           ..|+.+..  ..+...|.|++++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            367899999999999765    121          11   111           23555543  3568899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00071  Score=45.07  Aligned_cols=30  Identities=10%  Similarity=0.040  Sum_probs=24.6

Q ss_pred             EEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         89 EMEHKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        89 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .....+....|.|.+++.+|+|.|.|.+..
T Consensus        67 ~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          67 SGTFNESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEeCCCCEEEEEhhcCccccCEeEEEEEec
Confidence            334556788999999999999999997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.00025  Score=47.38  Aligned_cols=59  Identities=8%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    -+.          .++   ..           ..|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            356788999999999754    122          111   11           23555543  3567899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        91 TavYYCAR~   99 (127)
T d2fx7h1          91 TAVYYCARE   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999644

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.18  E-value=0.00029  Score=46.57  Aligned_cols=60  Identities=7%  Similarity=0.014  Sum_probs=41.9

Q ss_pred             CeeeecCcEEEEEEEccCc---c--ce----------EEe---ec----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK---E--IV----------RKI---TA----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~---~--i~----------~~~---~~----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..   .  +.          .++   ..          ..|+.+..  ..+...|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            3477889999999999864   1  12          111   11          23555543  456789999999999


Q ss_pred             CCeEEEEEEE
Q psy14060        108 DDGYYAITER  117 (283)
Q Consensus       108 D~G~Y~C~a~  117 (283)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.18  E-value=0.0012  Score=44.32  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-----------C--CCCeEEEEe--CCEEEEEEcC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-----------S--SPDFQIHTF--STKSILIMRQ  195 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-----------~--~~~~~~~~~--~~~~~l~i~~  195 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|.  |+.      +.           +  ..++.+..+  .+...|.+.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~   87 (131)
T d3c2ah1           8 GGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS   87 (131)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence            344678899999999998853  346788864  211      10           0  134555554  3456799999


Q ss_pred             CCCCCCEEEEEEEE
Q psy14060        196 VFMEDSGVFAVIAE  209 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~  209 (283)
                      ++.+|++.|+|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999854

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.00017  Score=48.45  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=41.6

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCCCCC
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASELDDD  109 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~~D~  109 (283)
                      +.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.|++++.+|+
T Consensus        11 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDt   90 (130)
T d1rhhb1          11 KKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDT   90 (130)
T ss_dssp             ECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCc
Confidence            66789999999999865    122          222   1 1          23555543  35678999999999999


Q ss_pred             eEEEEEEEe
Q psy14060        110 GYYAITERK  118 (283)
Q Consensus       110 G~Y~C~a~n  118 (283)
                      +.|.|....
T Consensus        91 AvYyCAr~~   99 (130)
T d1rhhb1          91 AVYYCARDF   99 (130)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.0002  Score=47.62  Aligned_cols=58  Identities=12%  Similarity=0.082  Sum_probs=41.5

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---eec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---ITA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .+   +..           ..|+.+..  ..+...|.|++++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSED   90 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCc
Confidence            366789999999999865    122          12   111           23555543  3578999999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 TAvYYCAR   98 (124)
T d1yedb1          91 SAVYFCTR   98 (124)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEecc
Confidence            99999954

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.17  E-value=0.00017  Score=48.24  Aligned_cols=58  Identities=10%  Similarity=0.080  Sum_probs=41.3

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+..|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eD   90 (127)
T d1n0xh1          11 VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSAD   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCC
Confidence            467789999999999855    122          222   11           23555543  3568899999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|.-
T Consensus        91 tAvYYCAR   98 (127)
T d1n0xh1          91 TAVYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEe
Confidence            99999953

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.17  E-value=0.00025  Score=47.28  Aligned_cols=24  Identities=8%  Similarity=0.101  Sum_probs=20.7

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         94 GKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      .....|.|.+++.+|+|.|.|.+.
T Consensus        76 ~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          76 SRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             SSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEEeecccCCCCCcEEEEeEc
Confidence            346789999999999999999764

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.17  E-value=0.0003  Score=47.30  Aligned_cols=60  Identities=8%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEEc--CCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEHK--GKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~~--~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..+  .+...|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            3477889999999999865    122          222   11           235555433  45688999999999


Q ss_pred             CCeEEEEEEE
Q psy14060        108 DDGYYAITER  117 (283)
Q Consensus       108 D~G~Y~C~a~  117 (283)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (135)
T d1ieha_          90 DTAVYYCAKY   99 (135)
T ss_dssp             SCEEEEEEEB
T ss_pred             cceeeEEEEe
Confidence            9999999643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0011  Score=43.14  Aligned_cols=75  Identities=9%  Similarity=0.003  Sum_probs=42.9

Q ss_pred             eeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEeCC---EEEEEEcCCCCC--CCEEEEEEEEeCCc
Q psy14060        143 CRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTFST---KSILIMRQVFME--DSGVFAVIAENRGG  213 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~--d~G~Y~C~a~n~~g  213 (283)
                      ........+.|.|.+.|. |. ..|+|.+++..+.....  ......+.   .+.|.|......  ....|+|.+.+..+
T Consensus        16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            344456789999999996 54 58999998876543210  01111121   234666654432  23489999999876


Q ss_pred             eeEE
Q psy14060        214 KAKC  217 (283)
Q Consensus       214 ~~~~  217 (283)
                      ....
T Consensus        96 ~~~~   99 (105)
T d1dn0b2          96 NKEK   99 (105)
T ss_dssp             CEEE
T ss_pred             CEEe
Confidence            5443

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.15  E-value=0.00058  Score=45.34  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-C----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-S----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|+++.|.|.++|..  .-.+.|+|.  |+.      +. .          ..++.+..+.  +...|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            345678899999999999853  345788874  111      11 1          1345555543  45679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0002  Score=47.81  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=41.3

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---ee-c----------CCCEEEE--EcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---IT-A----------TETTEME--HKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~-~----------~~~~~~~--~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .+   +. .          ..|+.+.  ...+...|.|.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eD   89 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSED   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCc
Confidence            366788999999999865    111          11   11 1          2455554  34678999999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        90 TAvYYCAr   97 (126)
T d1lmka1          90 SAVYYCAR   97 (126)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999953

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.15  E-value=0.00044  Score=46.23  Aligned_cols=67  Identities=12%  Similarity=0.166  Sum_probs=47.0

Q ss_pred             eeecCCCcEEEEEEEeeecC---CEEEEEeC--CEec------CC----------CCCeEEEEe--CCEEEEEEcCCCCC
Q psy14060        143 CRAFEQDQARFEVEFDGDPL---PTIKWFRE--DFPI------TS----------SPDFQIHTF--STKSILIMRQVFME  199 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p~---~~~~W~k~--~~~~------~~----------~~~~~~~~~--~~~~~l~i~~~~~~  199 (283)
                      ..+.+|+++.|.|.++|...   ..+.|+|.  |+.+      ..          ..++.+..+  .+...|.|.++..+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            45788999999999998643   46889874  3221      11          123444443  34567999999999


Q ss_pred             CCEEEEEEEE
Q psy14060        200 DSGVFAVIAE  209 (283)
Q Consensus       200 d~G~Y~C~a~  209 (283)
                      |.+.|+|...
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999753

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.00027  Score=47.40  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=40.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            366788999999999865    122          111   11           23555543  3467889999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tA~YYCAr   98 (130)
T d1rzga1          91 TAVFYCAS   98 (130)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999964

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00032  Score=46.12  Aligned_cols=80  Identities=11%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             CCeEEe-cCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeE--EEE-----eCC---EEEEEEcCCCCC
Q psy14060        133 PPVFTK-KIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQ--IHT-----FST---KSILIMRQVFME  199 (283)
Q Consensus       133 ~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~--~~~-----~~~---~~~l~i~~~~~~  199 (283)
                      +|.+.. .+....+..++.++|.|.+.+. |. ..+.|+++|..+.......  ...     .+.   .+.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            444443 3344455677899999999985 44 4899999998875432111  000     111   234555544333


Q ss_pred             CCEEEEEEEEeCC
Q psy14060        200 DSGVFAVIAENRG  212 (283)
Q Consensus       200 d~G~Y~C~a~n~~  212 (283)
                      ....|+|.+.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            4568999998754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00025  Score=46.00  Aligned_cols=66  Identities=17%  Similarity=0.182  Sum_probs=40.7

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ....++|.|.+.|. |. ..+.|+++|..+....  ......++.   .+.|.|..-.......|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45678999999995 53 5899999998764311  111111111   2345555433344568999998864

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=0.00021  Score=47.99  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---e----------------cCCCEEEEE--cCCEEEEEEcc
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---T----------------ATETTEMEH--KGKIQERVVDA  103 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------------~~~~~~~~~--~~~~~~L~i~~  103 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   .                ...|+.+..  ..+...|.|++
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            467789999999999865    122          122   0                012555543  35688999999


Q ss_pred             CCCCCCeEEEEEEE
Q psy14060        104 SELDDDGYYAITER  117 (283)
Q Consensus       104 ~~~~D~G~Y~C~a~  117 (283)
                      ++.+|++.|.|...
T Consensus        91 l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          91 LKPEDTAVYYCAAK  104 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccceeEEEEEEE
Confidence            99999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=5.1e-05  Score=49.31  Aligned_cols=57  Identities=11%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             eeecCcEEEEEEEccCc----cce----------EEe---e----------cCCCEEEEE--cCCEEEEEEccCCCCCCe
Q psy14060         60 IHTAKSQQVQKEKKGDK----EIV----------RKI---T----------ATETTEMEH--KGKIQERVVDASELDDDG  110 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~----~i~----------~~~---~----------~~~~~~~~~--~~~~~~L~i~~~~~~D~G  110 (283)
                      |.+|++++|.|.+.|..    .+.          +++   .          ...|+.+..  ..+...|.|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            67789999999998753    221          121   1          123555654  345788999999999999


Q ss_pred             EEEEEE
Q psy14060        111 YYAITE  116 (283)
Q Consensus       111 ~Y~C~a  116 (283)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999954

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.00025  Score=46.14  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ....+.|.|.+.|. |. ..++|+++|..+....  ......++.   .+.|.|..........|+|.+.+..
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            35688999999886 33 5899999998764311  011111111   2245665544455668999998864

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00064  Score=43.44  Aligned_cols=62  Identities=13%  Similarity=0.140  Sum_probs=38.3

Q ss_pred             CCcEEEEEEEeeecC--CEEEEEeCCEecCCCCCe--EEEE-eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        148 QDQARFEVEFDGDPL--PTIKWFREDFPITSSPDF--QIHT-FST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       148 g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~~~~--~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      +..++|.|.+.|..+  ..++|+++|..+......  .... .+.   .+.|.+.   ..+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECc
Confidence            567999999999633  478999999877542211  0111 111   1234443   344567999998764

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00018  Score=47.46  Aligned_cols=59  Identities=10%  Similarity=0.078  Sum_probs=40.6

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec----------CCCEEEE--EcCCEEEEEEccCCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA----------TETTEME--HKGKIQERVVDASELDDD  109 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~----------~~~~~~~--~~~~~~~L~i~~~~~~D~  109 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..          ..|+.+.  ...+...|.+++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            367889999999999865    111          111   11          1233333  345678999999999999


Q ss_pred             eEEEEEEE
Q psy14060        110 GYYAITER  117 (283)
Q Consensus       110 G~Y~C~a~  117 (283)
                      +.|.|...
T Consensus        91 AvYyCAr~   98 (116)
T d1fn4b1          91 GTYYCTRD   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99999543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.11  E-value=0.00029  Score=45.78  Aligned_cols=66  Identities=9%  Similarity=0.085  Sum_probs=40.3

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .+..++|.|.+.|. |. ..+.|+++|........  .....++.   .+.|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            56789999999985 53 58999999976542110  01111111   2346555443334567999998864

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.10  E-value=0.00022  Score=47.79  Aligned_cols=59  Identities=7%  Similarity=0.101  Sum_probs=39.7

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            367889999999998754    111          111   11           13555543  3567889999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        90 TAvYYCAr~   98 (126)
T d1rjca1          90 TAMYYCAAD   98 (126)
T ss_dssp             CEEEEEEEC
T ss_pred             CceeEEEee
Confidence            999999644

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.10  E-value=0.00037  Score=46.20  Aligned_cols=58  Identities=10%  Similarity=-0.041  Sum_probs=41.0

Q ss_pred             eeeecCcEEEEEEEccCc------cce----------EE---eec----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK------EIV----------RK---ITA----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~------~i~----------~~---~~~----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.|..      -+.          ++   +..          ..|+.+..  ..+...|.|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            477899999999998753      121          11   111          13555543  356789999999999


Q ss_pred             CCeEEEEEE
Q psy14060        108 DDGYYAITE  116 (283)
Q Consensus       108 D~G~Y~C~a  116 (283)
                      |++.|.|..
T Consensus        91 DtAvYYCAr   99 (120)
T d1ai1h1          91 DTAMYYCSR   99 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEEEEe
Confidence            999999964

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.09  E-value=0.00065  Score=45.41  Aligned_cols=70  Identities=19%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeCC--Ee------cC-C----------CCCeEEEEeC--CEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP------IT-S----------SPDFQIHTFS--TKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~--~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  197 (283)
                      ....+.+|++++|.|.++|..  ...+.|+|..  +.      +. .          ..++.+..+.  +...|+|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~   87 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR   87 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence            344678899999999999853  3467888742  11      11 1          1345565543  45679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy14060        198 MEDSGVFAVIAEN  210 (283)
Q Consensus       198 ~~d~G~Y~C~a~n  210 (283)
                      .+|++.|+|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.09  E-value=0.00051  Score=45.55  Aligned_cols=70  Identities=17%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             CceeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cC-----------C--CCCeEEEEeC--CEEEEEEcC
Q psy14060        141 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------IT-----------S--SPDFQIHTFS--TKSILIMRQ  195 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~-----------~--~~~~~~~~~~--~~~~l~i~~  195 (283)
                      ....+.+|++++|.|.++|..  .-.+.|+|.  |+.      +.           +  ..++.+..+.  +...|++.+
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            345678899999999999853  346889874  211      11           0  1355565543  345799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy14060        196 VFMEDSGVFAVIAEN  210 (283)
Q Consensus       196 ~~~~d~G~Y~C~a~n  210 (283)
                      ++.+|++.|+|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.09  E-value=0.00017  Score=47.67  Aligned_cols=59  Identities=5%  Similarity=0.014  Sum_probs=38.1

Q ss_pred             eeecCcEEEEEEEccCc--cce----------EEe---------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK--EIV----------RKI---------TATETTEME--HKGKIQERVVDASELDDDGYYAITE  116 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~--~i~----------~~~---------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a  116 (283)
                      +.+|+.|+|.|......  .+.          +.+         ....++...  ..+....|.|.++.++|+|.|.|.+
T Consensus        12 ~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~   91 (110)
T d1ac6a_          12 LSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCAL   91 (110)
T ss_dssp             EETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceee
Confidence            56678999999865432  122          111         012233332  2345788999999999999999976


Q ss_pred             Ee
Q psy14060        117 RK  118 (283)
Q Consensus       117 ~n  118 (283)
                      ..
T Consensus        92 ~~   93 (110)
T d1ac6a_          92 SG   93 (110)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00067  Score=44.40  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=41.9

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEE-E---eCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIH-T---FST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~-~---~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .+..++|.|.+.|. |. ..|+|++||..+......... .   ++.   .+.|.|..-.......|+|.+.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            45689999999986 44 589999999876532111100 0   011   234666554434455899999886543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.08  E-value=0.00068  Score=44.78  Aligned_cols=72  Identities=13%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             cCCceeecCCCcEEEEEEEeeecC--CEEEEEeC--CEe------cC---C----------CCCeEEEEe--CCEEEEEE
Q psy14060        139 KIQPCRAFEQDQARFEVEFDGDPL--PTIKWFRE--DFP------IT---S----------SPDFQIHTF--STKSILIM  193 (283)
Q Consensus       139 ~~~~~~~~~g~~v~l~C~~~g~p~--~~~~W~k~--~~~------~~---~----------~~~~~~~~~--~~~~~l~i  193 (283)
                      ......+.+|+++.|.|.++|...  -.+.|+|.  |+.      +.   .          ..++.+..+  .+...|.+
T Consensus         6 eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           6 ESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            344567889999999999998533  35788873  211      11   1          123444443  33556999


Q ss_pred             cCCCCCCCEEEEEEEEe
Q psy14060        194 RQVFMEDSGVFAVIAEN  210 (283)
Q Consensus       194 ~~~~~~d~G~Y~C~a~n  210 (283)
                      .+++.+|++.|+|....
T Consensus        86 ~~L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRAG  102 (121)
T ss_dssp             ESCCGGGCEECEEEEEE
T ss_pred             cccCCCcceEEEEeccC
Confidence            99999999999997543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.08  E-value=0.00025  Score=46.94  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=41.1

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e---c----------CCCEEEEE--cCCEEEEEEccCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T---A----------TETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~---~----------~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   .   .          ..|+.+..  ..+...|.|++++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            3477889999999999865    122          121   1   0          11333332  3568889999999


Q ss_pred             CCCCeEEEEEEE
Q psy14060        106 LDDDGYYAITER  117 (283)
Q Consensus       106 ~~D~G~Y~C~a~  117 (283)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.05  E-value=0.00044  Score=46.53  Aligned_cols=59  Identities=12%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             eeeecCcEEEEEEEccCc----cce----------EE---ee-----------cCCCEEEEEc--CCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK----EIV----------RK---IT-----------ATETTEMEHK--GKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~----~i~----------~~---~~-----------~~~~~~~~~~--~~~~~L~i~~~~~~D  108 (283)
                      .+.+|++++|.|.+.|..    .+.          .+   +.           ...|+.+..+  .+...|.+++++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            477788999999999865    111          11   11           1245555543  568899999999999


Q ss_pred             CeEEEEEEE
Q psy14060        109 DGYYAITER  117 (283)
Q Consensus       109 ~G~Y~C~a~  117 (283)
                      ++.|.|...
T Consensus        90 tA~YYCAr~   98 (133)
T d1rzfh1          90 TAVYYCASN   98 (133)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEeeec
Confidence            999999554

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00033  Score=45.53  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      .++.++|.|.+.|. |. ..++|+++|.......  ......++.   .+.|.+..-.......|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999985 43 5899999998754311  011111111   2346665444344557999998864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00012  Score=48.69  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.5

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         94 GKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      .+..+|.|.+++.+|+|.|.|.+...
T Consensus        76 ~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          76 HKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CCEEEEEECCCChhHCEEEEEEEEeC
Confidence            35778999999999999999988654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.03  E-value=0.00016  Score=47.95  Aligned_cols=59  Identities=8%  Similarity=0.061  Sum_probs=41.8

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---ec-----------CCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---TA-----------TETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~~-----------~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      ..+.+|++++|.|.+.|..    .+.          .++   ..           ..|+.+..  ..+...|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            3478899999999998754    121          222   11           13555553  356789999999999


Q ss_pred             CCeEEEEEE
Q psy14060        108 DDGYYAITE  116 (283)
Q Consensus       108 D~G~Y~C~a  116 (283)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (121)
T d2p49b1          90 DTATYYCAA   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEeeec
Confidence            999999964

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.02  E-value=0.0004  Score=46.65  Aligned_cols=58  Identities=5%  Similarity=0.019  Sum_probs=40.4

Q ss_pred             eeeecCcEEEEEEEccCc------cce----------EEe---e----------cCCCEEEEE--cCCEEEEEEccCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK------EIV----------RKI---T----------ATETTEMEH--KGKIQERVVDASELD  107 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~------~i~----------~~~---~----------~~~~~~~~~--~~~~~~L~i~~~~~~  107 (283)
                      .+.+|++++|.|.+.|..      .+.          +++   .          ...|+.+..  ..+...|.|++++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            466799999999988643      111          111   1          123555543  356789999999999


Q ss_pred             CCeEEEEEE
Q psy14060        108 DDGYYAITE  116 (283)
Q Consensus       108 D~G~Y~C~a  116 (283)
                      |++.|.|..
T Consensus        91 DtAvYyCAr   99 (126)
T d1etzb1          91 DTATYHCAR   99 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             ccceEEEEE
Confidence            999999964

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.02  E-value=0.00067  Score=45.56  Aligned_cols=60  Identities=8%  Similarity=0.045  Sum_probs=42.0

Q ss_pred             CeeeecCcEEEEEEEccCc----cce----------EEe---e-------------cCCCEEEEE--cCCEEEEEEccCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK----EIV----------RKI---T-------------ATETTEMEH--KGKIQERVVDASE  105 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-------------~~~~~~~~~--~~~~~~L~i~~~~  105 (283)
                      ..+.+|++++|.|.+.|..    -+.          .++   .             ...|+.+..  ..+...|.|++++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            3477889999999998765    121          122   1             123455543  3568899999999


Q ss_pred             CCCCeEEEEEEE
Q psy14060        106 LDDDGYYAITER  117 (283)
Q Consensus       106 ~~D~G~Y~C~a~  117 (283)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999644

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.01  E-value=0.00029  Score=46.69  Aligned_cols=59  Identities=7%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             eeecCcEEEEEEEccCc-cce----------EEe-------------ecCCCEEEEE-cCCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------RKI-------------TATETTEMEH-KGKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~~~-------------~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++++|.|...... .+.          +.+             ....++.... ......|.|.+++++|+|.|.|
T Consensus        11 ~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   90 (112)
T d1kgce1          11 AKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLC   90 (112)
T ss_dssp             EETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEE
Confidence            56788999999864322 221          000             1123343332 2345789999999999999999


Q ss_pred             EEEe
Q psy14060        115 TERK  118 (283)
Q Consensus       115 ~a~n  118 (283)
                      .+..
T Consensus        91 a~~~   94 (112)
T d1kgce1          91 ASSL   94 (112)
T ss_dssp             EEES
T ss_pred             eeeC
Confidence            7653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.01  E-value=0.00054  Score=45.77  Aligned_cols=58  Identities=7%  Similarity=0.055  Sum_probs=40.2

Q ss_pred             eeeecCcEEEEEEEccCc-----cce----------EEe---ec----------CCCEEE--EEcCCEEEEEEccCCCCC
Q psy14060         59 EIHTAKSQQVQKEKKGDK-----EIV----------RKI---TA----------TETTEM--EHKGKIQERVVDASELDD  108 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g~~-----~i~----------~~~---~~----------~~~~~~--~~~~~~~~L~i~~~~~~D  108 (283)
                      .+.+|+++.|.|.+.|..     -+.          .++   ..          ..|+.+  +...+...|.|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            477789999999998754     112          112   11          123333  334678999999999999


Q ss_pred             CeEEEEEE
Q psy14060        109 DGYYAITE  116 (283)
Q Consensus       109 ~G~Y~C~a  116 (283)
                      ++.|.|..
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999964

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.01  E-value=0.00027  Score=46.78  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             eeecCcEEEEEEEccCc-cce----------EEe-------------ecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEE
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV----------RKI-------------TATETTEMEHK-GKIQERVVDASELDDDGYYAI  114 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~----------~~~-------------~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C  114 (283)
                      +.+|++++|.|...+.. .+.          +.+             ....++..... +....|+|.++..+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyC   90 (111)
T d2esve1          11 IEKGQTVTLRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFC   90 (111)
T ss_dssp             EETTCCEEEEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEE
Confidence            56788999999855432 221          111             01234444332 335789999999999999999


Q ss_pred             EEEe
Q psy14060        115 TERK  118 (283)
Q Consensus       115 ~a~n  118 (283)
                      .+..
T Consensus        91 a~~~   94 (111)
T d2esve1          91 ASSQ   94 (111)
T ss_dssp             EEES
T ss_pred             eeeC
Confidence            7543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0008  Score=42.97  Aligned_cols=31  Identities=13%  Similarity=0.184  Sum_probs=26.5

Q ss_pred             cCCCeEEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060        249 NVGQLARFDAKISA-TKPLDVYWLKVSSLSDV  279 (283)
Q Consensus       249 ~~g~~v~L~C~~~g-~p~~~v~W~~~g~~l~~  279 (283)
                      ..|+.++|.|.+.| +|.+.|.|++||+.+..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~   45 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNA   45 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecc
Confidence            46788999999997 58889999999988754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.99  E-value=0.00069  Score=45.75  Aligned_cols=61  Identities=8%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             CeeeecCcEEEEEEEccCc--c----ce----------EEe-------------ecCCCEEEEE--cCCEEEEEEccCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK--E----IV----------RKI-------------TATETTEMEH--KGKIQERVVDASEL  106 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~--~----i~----------~~~-------------~~~~~~~~~~--~~~~~~L~i~~~~~  106 (283)
                      ..+.+|++++|.|.+.|..  .    +.          +++             ....|+.+..  ..+...|.|++++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            3477799999999988643  1    11          111             0124555543  35678899999999


Q ss_pred             CCCeEEEEEEEe
Q psy14060        107 DDDGYYAITERK  118 (283)
Q Consensus       107 ~D~G~Y~C~a~n  118 (283)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999996543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00054  Score=44.55  Aligned_cols=76  Identities=9%  Similarity=0.038  Sum_probs=45.7

Q ss_pred             EecCCceeecCCCcEEEEEEEeee-cC---CEEEEEeCCEecCCCCCeEEEEeC-C----EEEEEEcCCCCCCCEEEEEE
Q psy14060        137 TKKIQPCRAFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPDFQIHTFS-T----KSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       137 ~~~~~~~~~~~g~~v~l~C~~~g~-p~---~~~~W~k~~~~~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      +..|....+..+..++|.|.+.|. |.   ..+.|++++............... .    .+.|.|..-.......|+|.
T Consensus         5 l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~   84 (103)
T d1fp5a1           5 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR   84 (103)
T ss_dssp             EECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             EeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEE
Confidence            444555556677889999999984 43   367899988766543222222222 2    22344433322335689999


Q ss_pred             EEeCC
Q psy14060        208 AENRG  212 (283)
Q Consensus       208 a~n~~  212 (283)
                      +.+..
T Consensus        85 V~H~~   89 (103)
T d1fp5a1          85 VTHPH   89 (103)
T ss_dssp             EECSS
T ss_pred             EEECC
Confidence            98864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.97  E-value=0.00058  Score=44.07  Aligned_cols=43  Identities=19%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCC--CeeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~g~~l~~  279 (283)
                      ||.+...+.. .+..|+.++|.|.+.|.-+  ..++|++||+.+..
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~   47 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVAD   47 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCS
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccC
Confidence            5666553322 3567889999999999633  37999999988753

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.96  E-value=0.00048  Score=45.86  Aligned_cols=59  Identities=7%  Similarity=-0.004  Sum_probs=40.5

Q ss_pred             CeeeecCcEEEEEEEccCc------cce----------EEe---ec----------CCCEEEEE--cCCEEEEEEccCCC
Q psy14060         58 KEIHTAKSQQVQKEKKGDK------EIV----------RKI---TA----------TETTEMEH--KGKIQERVVDASEL  106 (283)
Q Consensus        58 ~~v~~g~~v~l~C~~~g~~------~i~----------~~~---~~----------~~~~~~~~--~~~~~~L~i~~~~~  106 (283)
                      ..+.+|++++|.|.+.|..      -+.          +++   ..          ..|+.+..  ..+...|.|++++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            3467799999999988743      111          121   11          13455543  34678899999999


Q ss_pred             CCCeEEEEEE
Q psy14060        107 DDDGYYAITE  116 (283)
Q Consensus       107 ~D~G~Y~C~a  116 (283)
                      +|++.|.|..
T Consensus        90 eDsAvYyCAr   99 (123)
T d1r0ah1          90 ADTAIYYCAQ   99 (123)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEeecc
Confidence            9999999963

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.92  E-value=0.00036  Score=46.35  Aligned_cols=25  Identities=8%  Similarity=0.155  Sum_probs=21.0

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         94 GKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      .....|.|.++.++|+|.|.|.+..
T Consensus        69 ~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          69 KESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             TTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CCeEEEEECcCCcCCceeEEEeecc
Confidence            3456899999999999999996553

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.91  E-value=0.001  Score=43.65  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             CceeecCCCcEEEEEEEeee--cCCEEEEEeC--CE------ecC-CC----------CCeEEEEe--CCEEEEEEcCCC
Q psy14060        141 QPCRAFEQDQARFEVEFDGD--PLPTIKWFRE--DF------PIT-SS----------PDFQIHTF--STKSILIMRQVF  197 (283)
Q Consensus       141 ~~~~~~~g~~v~l~C~~~g~--p~~~~~W~k~--~~------~~~-~~----------~~~~~~~~--~~~~~l~i~~~~  197 (283)
                      ....+.+|+++.|.|.++|.  ..-.+.|+|.  ++      .+. ..          .++.+..+  .+...|.+.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~   87 (117)
T d1b2wh1           8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR   87 (117)
T ss_dssp             CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence            34567899999999999985  3456788874  21      121 11          24555543  345679999999


Q ss_pred             CCCCEEEEEEE
Q psy14060        198 MEDSGVFAVIA  208 (283)
Q Consensus       198 ~~d~G~Y~C~a  208 (283)
                      .+|++.|+|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1b2wh1          88 PEDTAVYYCAR   98 (117)
T ss_dssp             GGGCEEEECCE
T ss_pred             CCcceEEEEcc
Confidence            99999999964

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.88  E-value=0.00049  Score=45.52  Aligned_cols=23  Identities=4%  Similarity=-0.091  Sum_probs=20.2

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEE
Q psy14060         95 KIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      ....|.|.++.++|+|.|.|.+.
T Consensus        70 ~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          70 EDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             SBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCCCHHHCEEEEEeec
Confidence            45689999999999999999765

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0014  Score=41.60  Aligned_cols=70  Identities=10%  Similarity=-0.011  Sum_probs=48.5

Q ss_pred             ceeecCCCcEEEEEEEeeecCCEEE-EEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060        142 PCRAFEQDQARFEVEFDGDPLPTIK-WFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA  215 (283)
Q Consensus       142 ~~~~~~g~~v~l~C~~~g~p~~~~~-W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  215 (283)
                      .+.+.+|+.+.+.|.++. |..+++ |..++..+.. ...+......   -+.|.+....+.|.|.|.|....-..
T Consensus        14 ~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~g~~~   85 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVNGHLY   85 (95)
T ss_dssp             EEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEECCEEE
Confidence            356788999999999986 776654 5556665543 3333322222   38899999999999999998764333

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.00012  Score=48.15  Aligned_cols=60  Identities=12%  Similarity=0.106  Sum_probs=42.2

Q ss_pred             CCeeeecCcEEEEEEEccCc----cce----------EEe---e-c----------CCCEEEEE--cCCEEEEEEccCCC
Q psy14060         57 GKEIHTAKSQQVQKEKKGDK----EIV----------RKI---T-A----------TETTEMEH--KGKIQERVVDASEL  106 (283)
Q Consensus        57 ~~~v~~g~~v~l~C~~~g~~----~i~----------~~~---~-~----------~~~~~~~~--~~~~~~L~i~~~~~  106 (283)
                      +..+.+|++++|.|.+.|..    .+.          .++   . .          ..|+.+..  ..+...|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            34577899999999999754    111          122   1 1          13556653  35688999999999


Q ss_pred             CCCeEEEEEE
Q psy14060        107 DDDGYYAITE  116 (283)
Q Consensus       107 ~D~G~Y~C~a  116 (283)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1b2wh1          89 EDTAVYYCAR   98 (117)
T ss_dssp             GGCEEEECCE
T ss_pred             CcceEEEEcc
Confidence            9999999953

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00025  Score=46.69  Aligned_cols=68  Identities=12%  Similarity=0.175  Sum_probs=45.9

Q ss_pred             eeecCCCcEEEEEEEeeec--CCEEEEEeC--CEe------cCCC----------CCeEEEEe--CCEEEEEEcCCCCCC
Q psy14060        143 CRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP------ITSS----------PDFQIHTF--STKSILIMRQVFMED  200 (283)
Q Consensus       143 ~~~~~g~~v~l~C~~~g~p--~~~~~W~k~--~~~------~~~~----------~~~~~~~~--~~~~~l~i~~~~~~d  200 (283)
                      ..+.+|++++|.|.++|..  .-.+.|+|.  ++.      +...          .++.+..+  .+...|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            4567899999999999854  346889874  221      1111          23334433  234568899999999


Q ss_pred             CEEEEEEEEe
Q psy14060        201 SGVFAVIAEN  210 (283)
Q Consensus       201 ~G~Y~C~a~n  210 (283)
                      ++.|+|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999997543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00024  Score=47.77  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             CEEEEE--cCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060         87 TTEMEH--KGKIQERVVDASELDDDGYYAITERKY  119 (283)
Q Consensus        87 ~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~  119 (283)
                      |+.+..  ..+..+|.|.+++++|+|.|.|.+...
T Consensus        71 R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeC
Confidence            445432  235778999999999999999987654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.78  E-value=0.0015  Score=43.56  Aligned_cols=77  Identities=12%  Similarity=0.002  Sum_probs=45.5

Q ss_pred             EecCCcee-ecCCCcEEEEEEEeee-cC---CEEEEEeCCEecCCCCC--eEEEEeCC---EEEEEEcCCCCCCCEEEEE
Q psy14060        137 TKKIQPCR-AFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPD--FQIHTFST---KSILIMRQVFMEDSGVFAV  206 (283)
Q Consensus       137 ~~~~~~~~-~~~g~~v~l~C~~~g~-p~---~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~G~Y~C  206 (283)
                      +..+.... ...+..++|.|.+.|. |.   ..++|++++..+.....  ......+.   .+.|.|..-.......|+|
T Consensus        20 i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC   99 (119)
T d1igtb3          20 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKC   99 (119)
T ss_dssp             EECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEE
T ss_pred             EECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEE
Confidence            33344333 3457789999999885 42   57899999988764322  12222222   2234443332234568999


Q ss_pred             EEEeCCc
Q psy14060        207 IAENRGG  213 (283)
Q Consensus       207 ~a~n~~g  213 (283)
                      .+.+..-
T Consensus       100 ~V~H~~l  106 (119)
T d1igtb3         100 KVNNKDL  106 (119)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9998653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.76  E-value=0.0015  Score=42.68  Aligned_cols=80  Identities=14%  Similarity=0.047  Sum_probs=46.3

Q ss_pred             CCCeEEe-cCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe--EEEEeCC---EEEEEEcCCCCCCCEE
Q psy14060        132 KPPVFTK-KIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF--QIHTFST---KSILIMRQVFMEDSGV  203 (283)
Q Consensus       132 ~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~G~  203 (283)
                      .+|.... .+....+..+..++|.|.+.|. |. ..+.|+++|..+......  .....+.   .+.|.+.....  ...
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~   84 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKE   84 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSC
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCe
Confidence            3444333 2333445667789999999985 43 368999998876542211  0111111   23455554332  236


Q ss_pred             EEEEEEeCCc
Q psy14060        204 FAVIAENRGG  213 (283)
Q Consensus       204 Y~C~a~n~~g  213 (283)
                      |+|.+.+...
T Consensus        85 ytC~V~H~s~   94 (107)
T d1hxmb2          85 HRCIVRHENN   94 (107)
T ss_dssp             EEEEEEETTS
T ss_pred             EEEEEEECCC
Confidence            9999998653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.74  E-value=0.001  Score=44.00  Aligned_cols=25  Identities=4%  Similarity=0.153  Sum_probs=21.4

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         94 GKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +....|.|.++.++|+|.|.|.+..
T Consensus        70 ~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          70 KERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             TTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CcEeeeEeccCccCCcccEEeeEcc
Confidence            3457899999999999999997754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00086  Score=41.58  Aligned_cols=56  Identities=16%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             eecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC-CCCEEEEEEEEe
Q psy14060        144 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM-EDSGVFAVIAEN  210 (283)
Q Consensus       144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n  210 (283)
                      .-..|.+|.|+|+..+  ...|.|.+++..+.....         ..|.+.+.+. +++|.|.|....
T Consensus        10 VSISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~---------~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          10 VSISGTSVELTCPLDS--DENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEEETTEEEEECSSCC--CTTCEEEETTEEECSCCC---------SEEEEESCCTTTSCEEEEEECSS
T ss_pred             EEEeCCEEEEECCCCC--CCceEEeeccccCCCCCC---------cEEEEccccccccCcceEEecCC
Confidence            3456899999999765  346999999998876432         1255556444 799999996543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.71  E-value=0.0014  Score=44.26  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CCeEEe-cCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCe---EEEE-----eCC---EEEEEEcCCCC
Q psy14060        133 PPVFTK-KIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDF---QIHT-----FST---KSILIMRQVFM  198 (283)
Q Consensus       133 ~p~~~~-~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~---~~~~-----~~~---~~~l~i~~~~~  198 (283)
                      ||.+.. .+....+..+..++|.|.+.|. |. ..|.|+++|..+......   ....     ++.   .+.|.|.....
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            555443 3333344556789999999986 43 369999999877532100   0000     001   23466665544


Q ss_pred             CCCE-EEEEEEEeCC
Q psy14060        199 EDSG-VFAVIAENRG  212 (283)
Q Consensus       199 ~d~G-~Y~C~a~n~~  212 (283)
                      .+.| .|+|.+.+..
T Consensus        84 ~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          84 QNPRNHFRCQVQFYG   98 (127)
T ss_dssp             TCTTCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECC
Confidence            4544 7999998754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.70  E-value=0.0024  Score=41.10  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .+|.+...+.. .+..|+..+|.|.+.|+ |.. .++|++||+.+..
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~   49 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTE   49 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCC
Confidence            45665543221 24567888999999996 433 7999999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.68  E-value=0.00047  Score=45.62  Aligned_cols=26  Identities=4%  Similarity=0.045  Sum_probs=21.8

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060         95 KIQERVVDASELDDDGYYAITERKYY  120 (283)
Q Consensus        95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~  120 (283)
                      ....|.|.++.++|+|.|.|.+....
T Consensus        69 ~~~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          69 EHFPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             SBCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             CceEeeeccccccccccEEEEEecCC
Confidence            45779999999999999999776543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00096  Score=44.47  Aligned_cols=27  Identities=15%  Similarity=0.186  Sum_probs=23.0

Q ss_pred             EcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         92 HKGKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      ..+....|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          70 SSGNQVNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             BCSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEeeccccCCCEEEEEeEec
Confidence            345688999999999999999997654

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.00072  Score=43.90  Aligned_cols=75  Identities=8%  Similarity=-0.011  Sum_probs=42.1

Q ss_pred             ecCCcee-ecCCCcEEEEEEEeee-cC---CEEEEEeCCEecCCCCCe-EEEEeCC----EEEEEEcCCCCCCCEEEEEE
Q psy14060        138 KKIQPCR-AFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPDF-QIHTFST----KSILIMRQVFMEDSGVFAVI  207 (283)
Q Consensus       138 ~~~~~~~-~~~g~~v~l~C~~~g~-p~---~~~~W~k~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  207 (283)
                      .+|.... ...+.+++|.|.+.+. |.   ..++|+++|..+...... .....+.    .+.|.|..-.......|+|.
T Consensus         5 ~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~   84 (103)
T d1i1ca1           5 FPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCK   84 (103)
T ss_dssp             ECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             ECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEE
Confidence            3443333 3346678999999885 43   478999998876542110 0111111    12344433222234569999


Q ss_pred             EEeCC
Q psy14060        208 AENRG  212 (283)
Q Consensus       208 a~n~~  212 (283)
                      +.+..
T Consensus        85 V~H~~   89 (103)
T d1i1ca1          85 VNSGA   89 (103)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            98865

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.62  E-value=0.002  Score=40.07  Aligned_cols=62  Identities=10%  Similarity=0.034  Sum_probs=37.0

Q ss_pred             CcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        149 DQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       149 ~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ..++|.|.+.|. |. ..+.|.++|..+...........+....+.+....  ....|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~--~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYE--DSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEET--TTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecC--CCCEEEEEEEECC
Confidence            356899999986 43 47899999987654322222222222223333333  3346999998864

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0036  Score=39.65  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .||.+...    .-..++.++|.|.+.|. |.. .++|++||+.+..
T Consensus         3 vpP~V~v~----~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~   45 (94)
T d1de4a1           3 VPPLVKVT----HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDA   45 (94)
T ss_dssp             BCCEEEEE----EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCEEEEE----EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECcc
Confidence            46666542    12356778999999995 544 7999999999854

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0014  Score=42.43  Aligned_cols=46  Identities=24%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecCC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDVK  280 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~~  280 (283)
                      .+|.+...+....-..++.++|.|.+.|..+.  .|.|++||+.+..+
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~   51 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG   51 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCC
Confidence            45665543332222346778999999995333  69999999987653

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0019  Score=41.95  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=29.1

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~  279 (283)
                      +|.+...+.......++.++|.|.+.|. |. ..|.|++||+.+..
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~   49 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD   49 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCC
Confidence            4544332222333456789999999985 43 37999999998753

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00091  Score=43.56  Aligned_cols=70  Identities=9%  Similarity=0.050  Sum_probs=42.0

Q ss_pred             ecCCCcEEEEEEEeee-cC---CEEEEEeCCEecCCCCC--eEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        145 AFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPD--FQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~-p~---~~~~W~k~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      +..+..++|.|.+.|. |.   ..+.|.+++..+.....  ......+.   .+.|.|..-.......|+|.+.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            4567889999999885 43   47889999987654211  11111111   123444433223455899999886543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.58  E-value=0.00016  Score=47.31  Aligned_cols=67  Identities=12%  Similarity=0.110  Sum_probs=39.8

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eE-EEEeCCE---EEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQ-IHTFSTK---SILIMRQVFMEDSGVFAVIAENRGG  213 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~-~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g  213 (283)
                      .+..+.|.|.+.|. |. ..|.|+++|..+..... .. ....+..   +.|.|......+...|+|.+.+...
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            35678999999985 43 48999999998764211 11 1111111   1233333233345679999988653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0021  Score=41.47  Aligned_cols=45  Identities=16%  Similarity=0.045  Sum_probs=29.8

Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .+|.+...+....-..++.++|.|.+.|.-+.  .|.|++||+.+..
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~   50 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA   50 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCC
Confidence            45655543332222245678999999986332  7999999998764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.0021  Score=43.02  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             CeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEee
Q psy14060        237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK  272 (283)
Q Consensus       237 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~  272 (283)
                      |.+...|....+.+|++++|.|.+.+.....+.|++
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            677777888899999999999999877777899997

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.54  E-value=0.00092  Score=44.20  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.1

Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060         94 GKIQERVVDASELDDDGYYAITERK  118 (283)
Q Consensus        94 ~~~~~L~i~~~~~~D~G~Y~C~a~n  118 (283)
                      +....|.|.+++++|+|.|.|.+..
T Consensus        71 ~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          71 DYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             TSCEEEECCSCCGGGCEEECEEEES
T ss_pred             CCeEEEEecccCcCCceeEEEEeec
Confidence            3457899999999999999997653

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.52  E-value=0.0026  Score=40.70  Aligned_cols=62  Identities=13%  Similarity=0.059  Sum_probs=36.5

Q ss_pred             CCcEEEEEEEeee-cC-CEEEEEeCCEecCC----CC---CeEEEEeCCE---EEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060        148 QDQARFEVEFDGD-PL-PTIKWFREDFPITS----SP---DFQIHTFSTK---SILIMRQVFMEDSGVFAVIAENRG  212 (283)
Q Consensus       148 g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~----~~---~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~  212 (283)
                      ...++|.|.+.|. |. ..+.|++|+..+..    ..   ......++..   +.|.+.   ..+...|+|.+.+..
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVD---GGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEEC---TTCGGGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            3478999999996 43 46899998765421    10   1111112222   234443   445567999998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0027  Score=40.80  Aligned_cols=43  Identities=16%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      +|.+...+. ..+..|+.++|.|.+.|..+.  .++|++||+.+..
T Consensus         5 ~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~   49 (100)
T d1k5nb_           5 TPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   49 (100)
T ss_dssp             CCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             CCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCC
Confidence            555544211 124578899999999996433  6899999998853

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0046  Score=39.80  Aligned_cols=68  Identities=10%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             CCCcEEEEEEEeee-cCC--EEEEEeCCEecCCCCC-eEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060        147 EQDQARFEVEFDGD-PLP--TIKWFREDFPITSSPD-FQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGK  214 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~~--~~~W~k~~~~~~~~~~-~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  214 (283)
                      .++.++|.|.+.|. |..  .+.|.+++..+..... ......+   ..+.|.|..........|+|.+.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999995 543  4678777654421100 0111111   1235777766655667899999886543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.38  E-value=0.0042  Score=39.65  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      ||.+...... ....++.++|.|.+.|+-+.  .++|++||+.+..
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   47 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMH   47 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            4555443221 24567889999999996333  7999999998853

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.018  Score=34.84  Aligned_cols=63  Identities=11%  Similarity=0.077  Sum_probs=41.7

Q ss_pred             eeeecCcEEEEEEEcc---Cccce---------EEeecCCCE--EEEEcC--CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         59 EIHTAKSQQVQKEKKG---DKEIV---------RKITATETT--EMEHKG--KIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        59 ~v~~g~~v~l~C~~~g---~~~i~---------~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      .+..|+.+.|+|-+.-   .|.++         .++......  .....+  ....|-+..+-++|.|.|+|.|.-..+
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            3677889999999863   34444         344322222  222222  357788899999999999998876554

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0068  Score=38.30  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      ||.+....   ....|+.++|.|.+.|. |.. .++|++||+.+..
T Consensus         3 PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   45 (94)
T d1t7va1           3 PPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEP   45 (94)
T ss_dssp             CCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCC
T ss_pred             CCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCC
Confidence            56655422   22467899999999995 433 7999999998753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.33  E-value=0.0035  Score=40.03  Aligned_cols=43  Identities=9%  Similarity=0.138  Sum_probs=25.2

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      +|.+...+.. ....++..+|.|.+.|..++  .++|++||..+..
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~   48 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKT   48 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCC
Confidence            4555443222 23446677899999996444  7999999998854

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0024  Score=41.65  Aligned_cols=44  Identities=16%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             CCeEEe-cCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        236 PPSFLT-TISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~-~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      +|.+.. .+....+..++.++|.|.+.|. |.. .|+|++||+.+..
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~   50 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR   50 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCC
Confidence            455544 3333445678899999999986 433 7999999998764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0071  Score=36.10  Aligned_cols=55  Identities=16%  Similarity=0.104  Sum_probs=35.6

Q ss_pred             eecCcEEEEEEEccCc-cce--EEeecCCCEEEE-EcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060         61 HTAKSQQVQKEKKGDK-EIV--RKITATETTEME-HKGKIQERVVDASELDDDGYYAITER  117 (283)
Q Consensus        61 ~~g~~v~l~C~~~g~~-~i~--~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~  117 (283)
                      ..|..++|.|...... ++.  +|+..+.-...+ ..+....+.|..  .+|+|.|.|..-
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEc
Confidence            3456799999998776 555  555444332221 123456677765  679999999854

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0052  Score=39.27  Aligned_cols=31  Identities=13%  Similarity=0.161  Sum_probs=25.2

Q ss_pred             cCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        249 NVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      ..|+.++|.|.+.|..+.  .++|++||+.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~   48 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK   48 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCC
Confidence            467889999999996333  6999999998764

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0015  Score=39.97  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             ecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCC-CCCEEEEEEEEe
Q psy14060        145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFM-EDSGVFAVIAEN  210 (283)
Q Consensus       145 ~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n  210 (283)
                      -..|.+|.|+|+..  ....+.|.+++..+...... .+....  ..|.+...+. +++|.|.|.+..
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~--~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEET--TEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCccccccccc--ceEEecccCccccCceEEEEcCC
Confidence            44688999999743  45679999999887643211 011111  1377777766 799999998854

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0074  Score=37.68  Aligned_cols=31  Identities=6%  Similarity=-0.068  Sum_probs=24.9

Q ss_pred             cCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        249 NVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       249 ~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      ..++.++|.|.+.|+.+.  .++|++||+.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~   45 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQ   45 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCC
Confidence            456789999999995433  6899999998864

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.01  Score=37.20  Aligned_cols=42  Identities=14%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecCC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDVK  280 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~~  280 (283)
                      ||.+....   ....+..++|.|.+.|. |.. .++|++||+.+..+
T Consensus         3 PP~V~v~~---~~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~   46 (91)
T d3frua1           3 PPSMRLKA---RPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG   46 (91)
T ss_dssp             CCEEEEEE---EECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC
T ss_pred             CCEEEEEe---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc
Confidence            56554421   12345688999999995 443 79999999987643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.16  E-value=0.0081  Score=38.34  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             CCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        235 VPPSFLTTISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       235 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .+|.+...+. ..+..|+..+|.|.+.|.-+.  .++|++||+.+..
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   49 (99)
T d1uvqa1           4 EVPEVTVFSK-SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE   49 (99)
T ss_dssp             CCCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECT
T ss_pred             cCCEEEEEcC-CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            3565554221 124567888999999996333  6999999998753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0052  Score=38.83  Aligned_cols=59  Identities=3%  Similarity=0.054  Sum_probs=39.9

Q ss_pred             eeecCcEEEEEEEccCc-cce------E-EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060         60 IHTAKSQQVQKEKKGDK-EIV------R-KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA  121 (283)
Q Consensus        60 v~~g~~v~l~C~~~g~~-~i~------~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  121 (283)
                      +.+|+.+.+-|.+.... +++      . .+..+..+..+..   .-++|.++...|+|.|.|.+.-...
T Consensus        17 v~eg~~~vIPC~vT~P~~~VtL~~~~~~~~~p~g~~v~~Dpk---~Gf~I~~~~~~~~g~y~C~a~~~g~   83 (95)
T d1fltx_          17 MTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSR---KGFIISNATYKEIGLLTCEATVNGH   83 (95)
T ss_dssp             ECTTSCEEECCCBSCTTSCCEEEETTTEEECCCSSSEEEETT---TEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EeCCCCEEEEccCCCCCceeEEEeccCCccCCCCCEEEECCC---CCEEEeCCCcccCeEEEEEEEECCE
Confidence            44567899999997433 332      2 2233445555543   3478999999999999999876543

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0075  Score=36.47  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060        147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE  209 (283)
Q Consensus       147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  209 (283)
                      ...+|.|.|..   ...++.|++++..+.....       ...+|.+-+......|.|.|.+.
T Consensus        21 ~dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~-------~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          21 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEES
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCceeccccc-------ccceeecCCcccCCCcceEcCCC
Confidence            34589999933   3468999999998764321       11246677777788999999753

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0085  Score=38.94  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=30.8

Q ss_pred             CCeEEecCCceEEcCCCeEEEEEEEEe-eCCC--eeEEeeCCEEecC
Q psy14060        236 PPSFLTTISSAVINVGQLARFDAKISA-TKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~g~~l~~  279 (283)
                      .|.+....   .+.+|+.++|.|.+.+ +|.+  .+.|+++++.+..
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~   47 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKS   47 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeec
Confidence            56665432   3679999999999976 5644  6899999998753

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0082  Score=37.98  Aligned_cols=30  Identities=10%  Similarity=0.066  Sum_probs=24.2

Q ss_pred             CCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060        250 VGQLARFDAKISATKPL--DVYWLKVSSLSDV  279 (283)
Q Consensus       250 ~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~  279 (283)
                      .++.++|.|.+.|..+.  .++|++||+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~   45 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQ   45 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGG
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCC
Confidence            35679999999996444  6899999998764

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0041  Score=40.13  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=39.2

Q ss_pred             CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060        147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGKAK  216 (283)
Q Consensus       147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  216 (283)
                      .+..++|.|.+.+. |. ..|+|.+++........-.....+.    .+.|.|..-... ...|+|.+.+......
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   93 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTK   93 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEE
Confidence            45689999999886 43 4799987764321000000111111    234666544332 3579999998765543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0073  Score=38.76  Aligned_cols=30  Identities=7%  Similarity=0.045  Sum_probs=23.9

Q ss_pred             CCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060        250 VGQLARFDAKISAT-KPL-DVYWLKVSSLSDV  279 (283)
Q Consensus       250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~  279 (283)
                      .++.++|.|.+.|. |.. .|+|++||+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~   49 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENN   49 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCC
Confidence            46789999999985 433 7999999987653