Psyllid ID: psy14091

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690----
SHITYTPRLVNYVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
ccccccccccccccEEEcccccccccccccccEEEEEccccEEEEEccccEEEEEcccccccccccccccccccEEEEccccccccEEEEEccccEEEEEEcccEEEEEccccccccccccccccccEEccccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccEEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEccEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccEEEEEEEcccccccEEcccEEEEEcccccccEEEEcccccEEEEEcccEEEEEcccccccccccccccEEEEEEEEccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEEEEEEccccccccccEEEEccccccccEEEcccccEEEEEEcccccEEEcccccEEEccccccccccccccccEEEEccccEEEEEcccccEEEEEcccEEEEEccccccccccccccccccEEccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEcccccccEEEEc
ccccccccccccccccccccccccHHHHccccEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccccEEcccccccEEEEEEEcccEEEEEEcccEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEccccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHccccEEEEEEcccEEEEEEcccEEEEEEccEEEEEcccEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEccccccccccccccHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEHccccccEEEEEEEcccEEEEEEcccEEEEEccccccEccccccccccEEEEEEcccEEEEEEcccccEEEEccccEEEEEcccccccccccccccccccccEEEEccccccEEEEEEcccEEEEEEcccEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEEccccccccccccccccccEEEccccccEEEEc
shitytprlvnyvftqipsepeelseplveipevplsggfyHVALVRNRrvhtwgsssygalgngptmsqisepepvvwfrnnkidvssvacGRLHTLVLTSsgvyawgssqygqlgiglidqsphpriipaLANIRVVSISAgqyhslaitsqgklytwgwgvhgqlglntvedmsePQLVKALEHEVIISAKGGHAHSIALTKAGrvwafgsgifgqlgtgsntkhkvpielyglpepismiatgyfhnlalgtsnrlytwgsspqvlRSQSQAQKRARMMCYSNQVKNAALAEfssevtspdannetkihlapspssaseknETAEYASFMQSFLSSaddgmahmsptlvdtshvkapilqiccgchhsmllsregrvytwgrnvdgqlgngsrkevhtptAISINIVmtssevssderspllsssikhitcggdfslamdesgkvwawgtnvqgqvpRYIGELLFykfnfdpvgplvkwipwfddsskkinaITFQSSSASWLLVASYDCSLHIIPVLsiiqnsepsqsnvawsLNDITtlsiqgknvncenltpcclcwwentlcdkdiVRSHHQMLIMRIdvssvacgRLHTLVLTSsgvyawgssqygqlgiglidqsphpriipaLANIRVVSISAgqyhslaitsqgklytwgwgvhgqlglntvedmsEPQLVKALEHEISSLV
shitytprlvnyVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFgqlgtgsntkHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDannetkihlapspssasEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGqlgngsrkevhtpTAISINIvmtssevssdeRSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALeheisslv
SHITYTPRLVNYVFTQipsepeelseplveipevplsGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVssderspllsssIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
***TYTPRLVNYVFTQI**********LVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGN**********EPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWG**************************************************************************************TLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGN*****VHTPTAISINIV******************IKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSE**QSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTV********************
**ITYTPRLVNYVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSA*******SPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLS******PSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
SHITYTPRLVNYVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS****************MMCYSNQVKNAALAEFSSEVTSPDANNETKIHL************TAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMT*************SSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
*****************PSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SHITYTPRLVNYVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query694 2.2.26 [Sep-21-2011]
Q5DX341392 X-linked retinitis pigmen yes N/A 0.456 0.227 0.305 9e-36
Q9FN03440 Ultraviolet-B receptor UV yes N/A 0.305 0.481 0.359 7e-30
Q5PQN1 1057 Probable E3 ubiquitin-pro yes N/A 0.329 0.216 0.360 1e-28
Q4U2R1 4836 E3 ubiquitin-protein liga yes N/A 0.402 0.057 0.299 2e-28
Q6PAV2 1057 Probable E3 ubiquitin-pro no N/A 0.324 0.212 0.350 2e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no N/A 0.327 0.046 0.333 3e-28
O95714 4834 E3 ubiquitin-protein liga yes N/A 0.332 0.047 0.310 4e-28
Q6P798551 RCC1 and BTB domain-conta no N/A 0.348 0.439 0.343 8e-28
Q5GLZ8 1057 Probable E3 ubiquitin-pro no N/A 0.329 0.216 0.355 1e-27
Q99LJ7551 RCC1 and BTB domain-conta no N/A 0.348 0.439 0.347 2e-27
>sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase regulator homolog OS=Caenorhabditis elegans GN=glo-4 PE=1 SV=1 Back     alignment and function desciption
 Score =  152 bits (384), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 177/380 (46%), Gaps = 63/380 (16%)

Query: 89   SVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIR-----VVSIS 142
            ++ACG  H LVL+SSG + AWG +++GQ G+G      H   I  L  +      +  I+
Sbjct: 780  AIACGAEHILVLSSSGQLSAWGGNRFGQCGVG------HSFRIANLHQVDGDWPAIEKIA 833

Query: 143  AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE--PQLVKALEHEVIISAKGGHAHS 200
             GQ+HS  I S G L+T+GWGV GQLG     + ++  P  V  L  +V   A  G AH+
Sbjct: 834  CGQFHSAFICSDGSLWTFGWGVWGQLGHGGRNNSNQLVPTRVNGLICKVTQIA-CGRAHT 892

Query: 201  IALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGL-PEPISMIATGYFHNLALGTSNR 259
            + LT  GRV   GSG +GQ+G   + K         L P  +  IAT Y+H++ +   NR
Sbjct: 893  VVLTDTGRVLVCGSGSYGQMGVDDDIKKVFAFTPLPLGPLRVRDIATHYYHSICITEDNR 952

Query: 260  LYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPS 319
            ++ WG +PQ L+ +    K+ R    S Q+KN                        PS  
Sbjct: 953  VFEWGRNPQELKMRMFVMKKIR----SAQLKNTE---------------------DPSSP 987

Query: 320  SASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREG 379
            S S    T      + + +   D G+  +   L         I+ + CG  HS L++ EG
Sbjct: 988  SPSTNGSTPRVNLNLPAEIPREDLGLREVKHFL------DGNIVSVACGLSHSALITSEG 1041

Query: 380  RVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDF 439
             +YTWG+ +D QLG+G++ E   P  +                 P  +  + +++ G + 
Sbjct: 1042 TLYTWGKGLDYQLGHGNKNERMEPHQVF---------------EPNGAKWV-NVSLGNNH 1085

Query: 440  SLAMDESGKVWAWGTNVQGQ 459
            ++A  + G V+AWG N  GQ
Sbjct: 1086 TIASTDDGSVFAWGKNDFGQ 1105
Could be a guanine-nucleotide releasing factor for glo-1. May play a role in gut granule biogenesis.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query694
328712024 1626 PREDICTED: hypothetical protein LOC10015 0.547 0.233 0.474 1e-112
380029875 1858 PREDICTED: uncharacterized protein LOC10 0.612 0.228 0.413 6e-98
383861352 1884 PREDICTED: uncharacterized protein LOC10 0.615 0.226 0.400 1e-97
332030031 2956 X-linked retinitis pigmentosa GTPase reg 0.652 0.153 0.368 2e-96
307176968 1719 X-linked retinitis pigmentosa GTPase reg 0.639 0.258 0.392 2e-96
350402535 1865 PREDICTED: hypothetical protein LOC10074 0.612 0.227 0.387 8e-96
307204787 1665 X-linked retinitis pigmentosa GTPase reg 0.590 0.246 0.339 2e-78
242004863 1229 hypothetical protein Phum_PHUM047680 [Pe 0.373 0.210 0.457 7e-66
405970894 1288 X-linked retinitis pigmentosa GTPase reg 0.472 0.254 0.337 2e-60
157112353 1973 hypothetical protein AaeL_AAEL006116 [Ae 0.590 0.207 0.319 1e-59
>gi|328712024|ref|XP_001948029.2| PREDICTED: hypothetical protein LOC100158844 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/430 (47%), Positives = 276/430 (64%), Gaps = 50/430 (11%)

Query: 36   LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
            L  G+ H A +RN +++TWG SSYG LG GP M++ + P PV WF   +++V  VACGR 
Sbjct: 800  LGAGWAHAAHIRNHKLYTWGHSSYGCLGVGPHMTKTATPNPVSWFVYIRVEVIQVACGRN 859

Query: 96   HTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
            H++ LT++GVY+WGS+ YGQLG G   Q+P+P ++ +L+N  +VS+SAGQYHSLAI++ G
Sbjct: 860  HSIALTTNGVYSWGSNHYGQLGTGRRGQAPYPMLVDSLSNELIVSVSAGQYHSLAISASG 919

Query: 156  KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
            +L+TWGWGV+GQLG   ++D  +P+L+K+LE+E IISA GG++HSI LT  G+V+ FGSG
Sbjct: 920  QLWTWGWGVYGQLGHGAIDDCEKPKLLKSLENENIISAYGGYSHSIILTSNGKVFTFGSG 979

Query: 216  IFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQ 275
             FGQLG GS TK   P+ +YGLPEPI  I T YFHNLAL    RLYTWGSSPQVLR  +Q
Sbjct: 980  SFGQLGNGSTTKITSPVPVYGLPEPIKCIYTAYFHNLALSDVGRLYTWGSSPQVLRFHAQ 1039

Query: 276  AQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQ 335
            +QKRAR     N+   A  AE  +                                    
Sbjct: 1040 SQKRARNQLVLNEGDQADDAEIDA------------------------------------ 1063

Query: 336  SFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNG 395
                +ADDG+ H+SPTLVDTSH+   I Q+CCGCHHS ++S  G++YTWG N+DGQLG  
Sbjct: 1064 ---LTADDGLLHLSPTLVDTSHISGDIFQMCCGCHHSAVISTTGQLYTWGLNLDGQLGVS 1120

Query: 396  SRKEVHTPTAISI---NIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAW 452
              +E   PT   +   ++++ SS  S         S IK + CG DF+LA+D + K+W W
Sbjct: 1121 GIRERLVPTVTLVGPPSVIVDSSSTS--------GSLIKEVRCGADFTLALDAANKLWGW 1172

Query: 453  GTNVQGQVPR 462
            G+N +GQ+ +
Sbjct: 1173 GSNHEGQLGK 1182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380029875|ref|XP_003698590.1| PREDICTED: uncharacterized protein LOC100869963 [Apis florea] Back     alignment and taxonomy information
>gi|383861352|ref|XP_003706150.1| PREDICTED: uncharacterized protein LOC100881287 [Megachile rotundata] Back     alignment and taxonomy information
>gi|332030031|gb|EGI69856.1| X-linked retinitis pigmentosa GTPase regulator-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307176968|gb|EFN66274.1| X-linked retinitis pigmentosa GTPase regulator-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350402535|ref|XP_003486520.1| PREDICTED: hypothetical protein LOC100745121 [Bombus impatiens] Back     alignment and taxonomy information
>gi|307204787|gb|EFN83345.1| X-linked retinitis pigmentosa GTPase regulator-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242004863|ref|XP_002423296.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis] gi|212506298|gb|EEB10558.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|405970894|gb|EKC35758.1| X-linked retinitis pigmentosa GTPase regulator-like protein [Crassostrea gigas] Back     alignment and taxonomy information
>gi|157112353|ref|XP_001651804.1| hypothetical protein AaeL_AAEL006116 [Aedes aegypti] gi|108878111|gb|EAT42336.1| AAEL006116-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query694
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.317 0.045 0.364 3.3e-41
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.304 0.479 0.361 1.8e-49
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.317 0.045 0.368 4.2e-41
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.317 0.045 0.368 1.3e-39
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.317 0.045 0.368 1.3e-39
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.317 0.046 0.364 3.9e-40
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.317 0.046 0.368 2.5e-41
UNIPROTKB|E1B782 4847 HERC2 "Uncharacterized protein 0.317 0.045 0.364 4e-40
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.317 0.045 0.368 2.5e-41
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.317 0.045 0.373 4.2e-41
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 345 (126.5 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
 Identities = 82/225 (36%), Positives = 128/225 (56%)

Query:    44 ALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSS 103
             A+  + +++  G  + G LG G T S +S P  +   ++  I   +V  G  H L L+S 
Sbjct:  3999 AVTADGKLYATGYGAGGRLGIGGTES-VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 4057

Query:   104 G-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGW 162
             G VY+WG ++ G+LG G       PR+I +L  I VV ++AG  HS  +T+ G LYTWG 
Sbjct:  4058 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 4117

Query:   163 GVHGQLGLNTVEDMSEPQLVKALE-HEVI-ISAKGGHAHSIALTKAGRVWAFGSGIFGQL 220
             G +G+LG +  ED  +P+LV+AL+ H V+ I+   G A ++ LT    VW++G G +G+L
Sbjct:  4118 GRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 4177

Query:   221 GTGSNTKHKVPIELYGLPE-PISMIATGYFHNLALGTSNRLYTWG 264
             G G +   KVP+++  L    +  +  G   ++AL  S  +YTWG
Sbjct:  4178 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 4222
GO:0008270 "zinc ion binding" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0005743 "mitochondrial inner membrane" evidence=IEA
GO:0007283 "spermatogenesis" evidence=IEA
GO:0005814 "centriole" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS
GO:0006886 "intracellular protein transport" evidence=NAS
GO:0006281 "DNA repair" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0016567 "protein ubiquitination" evidence=IDA
GO:0006974 "response to DNA damage stimulus" evidence=IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IPI
GO:0032183 "SUMO binding" evidence=IDA
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query694
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-27
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-27
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-24
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-22
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-21
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-21
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-15
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  118 bits (297), Expect = 3e-28
 Identities = 100/429 (23%), Positives = 161/429 (37%), Gaps = 87/429 (20%)

Query: 72  SEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPH-PRII 130
           S P P +  +  +I          H LV  +S VY+WGS+   +LG+G  +     P++ 
Sbjct: 43  SIPIPWIIRKVAQIINKH-----THLLVKMAS-VYSWGSNGMNELGLGNDETKVDRPQLN 96

Query: 131 PALA--NIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDM------------ 176
           P        ++ I+ G  HSL +   G LY+WG    G LG +  +D+            
Sbjct: 97  PFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDD 156

Query: 177 ----SEPQLV----KALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNT-- 226
               S P  V     A  H  ++    G   S+ LT  GRV+++G+   G+LG GS    
Sbjct: 157 YELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216

Query: 227 -KHKVPIELYGLPEP-ISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMC 284
            K  +      +P+  I  +A G  H +AL    ++Y WGS+ +                
Sbjct: 217 QKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQK---------------- 260

Query: 285 YSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKN------ETAEYASFMQSFL 338
              Q+           V   D        +      A  K+      E  E  ++  +  
Sbjct: 261 --GQLGRPTSERLKLVVLVGDP-----FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIF 313

Query: 339 SSADDGMAHMSPTLVDTSHVKAP-----ILQICCGCHHSMLLSREGRVYTWGRNVDGQLG 393
                G       L    + K       I  I  G  HS++L ++G +Y +GR   GQLG
Sbjct: 314 GQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373

Query: 394 NGSRK--EVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWA 451
                  +V TPT +S+ I                   ++ + CG   ++A  + G V++
Sbjct: 374 IQEEITIDVSTPTKLSVAI------------------KLEQVACGTHHNIARTDDGSVYS 415

Query: 452 WGTNVQGQV 460
           WG    G +
Sbjct: 416 WGWGEHGNL 424

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 694
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427|consensus443 100.0
KOG1427|consensus443 100.0
KOG0783|consensus 1267 99.95
KOG0783|consensus 1267 99.92
KOG1428|consensus 3738 99.92
KOG1428|consensus 3738 99.91
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.12
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.08
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.07
KOG0941|consensus 850 98.83
KOG0941|consensus 850 98.75
KOG3669|consensus705 95.81
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.52
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.82
KOG3669|consensus705 89.27
KOG0943|consensus 3015 88.15
KOG0646|consensus476 87.97
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-50  Score=401.40  Aligned_cols=357  Identities=32%  Similarity=0.591  Sum_probs=283.0

Q ss_pred             CCCeEEEEeCCC-eEEEeCCCCCccCCCCCCCC-CccEEcCCC--CCCcEEEEEecCceEEEEEcCCcEEEEeCCCCCCC
Q psy14091         93 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQS-PHPRIIPAL--ANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQL  168 (694)
Q Consensus        93 G~~h~~~l~~~G-vy~wG~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gql  168 (694)
                      -..|...++.-. ||+||.|...|||++..+.. ..|++.+..  +...|++++||..|+++|++||.||+||.|..|+|
T Consensus        57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L  136 (476)
T COG5184          57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL  136 (476)
T ss_pred             cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence            356666888888 99999999999999986655 899998876  56789999999999999999999999999999999


Q ss_pred             CCCCC----------------CCCCCCEEecc----cCCceEEEEEeCCcEEEEEEcCCeEEEEeCCCCcccCCCCCCCc
Q psy14091        169 GLNTV----------------EDMSEPQLVKA----LEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKH  228 (694)
Q Consensus       169 g~~~~----------------~~~~~p~~v~~----~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~  228 (694)
                      |....                .....|..|+.    ....++++++||++++++|+++|.||.||....+.++.+.....
T Consensus       137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s  216 (476)
T COG5184         137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS  216 (476)
T ss_pred             ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence            98762                12467888876    23447999999999999999999999999998888777643322


Q ss_pred             ccceeeccCCCCeEEEEEccCeEEEEecCCcEEEecCCCcccchhhHHHHHhhhhhcccccccccccccccccccCCCCC
Q psy14091        229 KVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANN  308 (694)
Q Consensus       229 ~~p~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (694)
                      .... +                                                                          
T Consensus       217 ~k~~-~--------------------------------------------------------------------------  221 (476)
T COG5184         217 QKTS-I--------------------------------------------------------------------------  221 (476)
T ss_pred             ccce-e--------------------------------------------------------------------------
Confidence            1100 0                                                                          


Q ss_pred             CceeeeCCCCCcccccccchhhhccccccccccCCCCccccCeeeeccCCCCCeEEEEecCceeEEEeCCccEEEEeCCC
Q psy14091        309 ETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNV  388 (694)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~aLt~~G~vy~wG~n~  388 (694)
                                                            ...|-.+.    ...|+++++|..|.++|+++|++|+||+|.
T Consensus       222 --------------------------------------~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~q  259 (476)
T COG5184         222 --------------------------------------QFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQ  259 (476)
T ss_pred             --------------------------------------eeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCc
Confidence                                                  00111111    246999999999999999999999999999


Q ss_pred             CCcCCCCCCcCccCCeeEeecccccccccCcCCCCcccCCCeEEEEecCceeEEEccCCcEEEEcCCCCCCCCccccccc
Q psy14091        389 DGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELL  468 (694)
Q Consensus       389 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~i~~Ia~G~~ht~alt~~G~vy~wG~n~~GqLG~~~~~~~  468 (694)
                      .||||....+....+..+.-+               +....|..|+||.+|++||+++|+||+||.|.+||||.++..  
T Consensus       260 kgqlG~~~~e~~~~~~lv~~~---------------f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~--  322 (476)
T COG5184         260 KGQLGRPTSERLKLVVLVGDP---------------FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDG--  322 (476)
T ss_pred             ccccCCchhhhcccccccCCh---------------hhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccc--
Confidence            999998877766655554211               233458999999999999999999999999999999987211  


Q ss_pred             ccccccCCCCCeeEeeccccCCCcceeeeeecccccceeEeeecCcceeeeeceeeecCCCCccccccccccceeeeeec
Q psy14091        469 FYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQ  548 (694)
Q Consensus       469 ~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (694)
                              +.....+                                                                 
T Consensus       323 --------~~~a~~t-----------------------------------------------------------------  329 (476)
T COG5184         323 --------EIGALTT-----------------------------------------------------------------  329 (476)
T ss_pred             --------ccceeec-----------------------------------------------------------------
Confidence                    0111110                                                                 


Q ss_pred             ceeeccCCCCcccccccCCcccccccccccccceeeeeeEEEEecCCcEEEEEECCC-EEEeecCCCCcCCCCC--CCCC
Q psy14091        549 GKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGL--IDQS  625 (694)
Q Consensus       549 g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g-v~~wG~n~~GqLG~g~--~~~~  625 (694)
                                                 +++.........|.+|++|..|+++|..+| +|+||++..||||...  +...
T Consensus       330 ---------------------------k~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~  382 (476)
T COG5184         330 ---------------------------KPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDV  382 (476)
T ss_pred             ---------------------------cccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeec
Confidence                                       001111112235899999999999999999 9999999999999997  5666


Q ss_pred             CCceeecccCCceEEEEecCCCceEEEecCCcEEEEeCCCCCCCCCCCC-CCcCCCeeecc
Q psy14091        626 PHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTV-EDMSEPQLVKA  685 (694)
Q Consensus       626 ~~P~~v~~l~~~~v~~is~G~~h~~al~~dG~v~~WG~n~~GqLG~g~~-~~~~~P~~v~~  685 (694)
                      ..|..+....  ++++|+||..|+++.+.+|.||+||+|.+||||+|+. .....|+.|+.
T Consensus       383 ~~~~~ls~~~--~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~  441 (476)
T COG5184         383 STPTKLSVAI--KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ  441 (476)
T ss_pred             CCcccccccc--ceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence            7777776554  4999999999999999999999999999999999976 67788888873

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query694
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-31
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 7e-25
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-19
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-16
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-31
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-25
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-19
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-16
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-31
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-24
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-19
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-16
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 7e-31
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-29
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 8e-25
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-19
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-16
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-27
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-19
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 5e-17
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-16
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 5e-13
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-15
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-08
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-06
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-15
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-09
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-08
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-06
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-12
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 1e-08
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 1e-09
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 1e-09
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 167/390 (42%), Gaps = 59/390 (15%)
Query: 38  GGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHT 97
           G  + VAL+    V +WG    G LG+G    +   P P      +   + SV CG  HT
Sbjct: 12  GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR---PSPTQLSALDGHQIVSVTCGADHT 68
Query: 98  LVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
           +  + SG  VY+WG   +G+LG G       P  I AL  IR+  I+ G  H LA+T +G
Sbjct: 69  VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
           ++ +WG   +GQLGL   ED   PQ ++A E   I     G  H+ A+T+ G ++ +G G
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 188
Query: 216 IFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
            +G LG G  T   VP  +     E +SM+A G+ H +++  S  LYT+G S        
Sbjct: 189 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY------ 242
Query: 275 QAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFM 334
                        Q+ +  L +                HL P    A   +  ++ +   
Sbjct: 243 ------------GQLGHGDLED----------------HLIPHKLEALSNSFISQISGGF 274
Query: 335 QSFLSSADDG------------------MAHMSPTLVDTSHVKAPILQICCGCHHSMLLS 376
           +  ++   DG                  +   SP  V        ++Q+ CG  H++ ++
Sbjct: 275 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD-DQKVVQVSCGWRHTLAVT 333
Query: 377 REGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
               V+ WGR  +GQLG G   + + P  I
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query694
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-86
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-61
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-60
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-58
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-57
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-31
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 6e-28
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 8e-28
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-27
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-27
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-20
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-18
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-16
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-11
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-74
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-72
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-72
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-67
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-60
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-50
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-37
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-34
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-34
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-34
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-33
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-33
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-32
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-23
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-22
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-22
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-22
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-21
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-19
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-18
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-16
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-14
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-05
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-71
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-71
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-65
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-57
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-35
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-34
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-32
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-31
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-31
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-31
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-23
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-23
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-21
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-20
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-19
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-19
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-18
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-15
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-61
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-61
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-47
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-34
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-31
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-30
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-29
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-28
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-27
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-26
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-24
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-19
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-19
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-18
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-17
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-16
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-12
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-06
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-60
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-60
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-58
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-56
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-46
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-37
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-34
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-29
3of7_A 473 Regulator of chromosome condensation; beta-propell 5e-29
3of7_A 473 Regulator of chromosome condensation; beta-propell 5e-28
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-27
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-22
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-22
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-20
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-16
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-14
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-41
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-35
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-34
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-27
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-26
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-19
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-19
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-17
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-16
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-12
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-12
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-05
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
 Score =  275 bits (705), Expect = 8e-86
 Identities = 104/428 (24%), Positives = 161/428 (37%), Gaps = 74/428 (17%)

Query: 55  GSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQY 113
           GS    AL N    +  +E +P       K   + +A         T  G V   G+   
Sbjct: 1   GSPRRKALTNNNN-AGEAEQQPP------KAKRARIAFHLELPKRRTVLGNVLVCGNGDV 53

Query: 114 GQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTV 173
           GQLG+G  D     R+ P       V ISAG  H+L +T  G +Y++G    G LG +T 
Sbjct: 54  GQLGLG-EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS 112

Query: 174 EDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGI--FGQLGTGSNTKHKVP 231
           ED SE +          +    G +HS  L + GRV+A+GS     G +G   +   + P
Sbjct: 113 EDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP 172

Query: 232 IELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKN 291
           I+L         IA+G  H + L T+ +++T G +      Q Q                
Sbjct: 173 IDLMEG-TVCCSIASGADHLVILTTAGKVFTVGCA-----EQGQ---------------- 210

Query: 292 AALAEFSSEVTSPDANNETKIHLAPSP-SSASEKNETAEYASFMQSFLSSADDGM----- 345
             L   S    S +     +  L P+       K   A +A+   +F+  +   +     
Sbjct: 211 --LGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATG 268

Query: 346 -------------AHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQL 392
                           + T + T      I  I  G HH+++L+ + +    GR   G+L
Sbjct: 269 LNNFKQLAHETKGKEFALTPIKTELKD--IRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326

Query: 393 GNGSRK-EVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWA 451
           G G  K  V  PT +                   L+  I  + CG   S A+   GK+++
Sbjct: 327 GLGDVKDVVEKPTIV-----------------KKLTEKIVSVGCGEVCSYAVTIDGKLYS 369

Query: 452 WGTNVQGQ 459
           WG+ V  Q
Sbjct: 370 WGSGVNNQ 377
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query694
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.34
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.1
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.89
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.42
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 95.08
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.01
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.12
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.32
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.46
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 87.29
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 86.95
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 82.69
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.5
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 81.57
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 80.25
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=8e-70  Score=585.77  Aligned_cols=364  Identities=30%  Similarity=0.567  Sum_probs=323.3

Q ss_pred             cEEEEEeCCCeEEEEeCCC-eEEEeCCCCCccCCCCCCCCCccEEcCCCCCCcEEEEEecCceEEEEEcCC-cEEEEeCC
Q psy14091         86 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG-KLYTWGWG  163 (694)
Q Consensus        86 ~i~~v~~G~~h~~~l~~~G-vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G-~v~~wG~n  163 (694)
                      +|++|+||..|+++|+++| ||+||.|.+||||++...+...|++++.+.+.+|++|+||.+|+++|+++| +||+||.|
T Consensus        17 ~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n   96 (406)
T 4d9s_A           17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG   96 (406)
T ss_dssp             CEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECC
T ss_pred             ceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCC
Confidence            8999999999999999999 999999999999999999899999999998889999999999999999986 99999999


Q ss_pred             CCCCCCCCCCCCCCCCEEecccCCceEEEEEeCCcEEEEEEcCCeEEEEeCCCCcccCCCCCCCcccceeeccCCCCeEE
Q psy14091        164 VHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISM  243 (694)
Q Consensus       164 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~i~~  243 (694)
                      .+||||.+...+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+      
T Consensus        97 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~------  170 (406)
T 4d9s_A           97 DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF------  170 (406)
T ss_dssp             GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG------
T ss_pred             CCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc------
Confidence            99999999988888999999998889999999999999999999999999999999999887766666655221      


Q ss_pred             EEEccCeEEEEecCCcEEEecCCCcccchhhHHHHHhhhhhcccccccccccccccccccCCCCCCceeeeCCCCCcccc
Q psy14091        244 IATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASE  323 (694)
Q Consensus       244 i~~g~~~~~~l~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (694)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (406)
T 4d9s_A          171 --------------------------------------------------------------------------------  170 (406)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhhhccccccccccCCCCccccCeeeeccCCCCCeEEEEecCceeEEEeCCccEEEEeCCCCCcCCCCCCcCccCC
Q psy14091        324 KNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTP  403 (694)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~aLt~~G~vy~wG~n~~GqLG~g~~~~~~~p  403 (694)
                                                        ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|
T Consensus       171 ----------------------------------~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p  216 (406)
T 4d9s_A          171 ----------------------------------EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP  216 (406)
T ss_dssp             ----------------------------------TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEE
T ss_pred             ----------------------------------CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCcc
Confidence                                              1236999999999999999999999999999999999988877777


Q ss_pred             eeEeecccccccccCcCCCCcccCCCeEEEEecCceeEEEccCCcEEEEcCCCCCCCCcccccccccccccCCCCCeeEe
Q psy14091        404 TAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKW  483 (694)
Q Consensus       404 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~~Ia~G~~ht~alt~~G~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~  483 (694)
                      .++..                ....+|++|+||.+|+++|+++|+||+||.|.+||||.++....              .
T Consensus       217 ~~v~~----------------~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~--------------~  266 (406)
T 4d9s_A          217 ERVTS----------------TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH--------------L  266 (406)
T ss_dssp             EECCC----------------STTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE--------------E
T ss_pred             EEecc----------------cCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc--------------c
Confidence            76642                33468999999999999999999999999999999998754322              0


Q ss_pred             eccccCCCcceeeeeecccccceeEeeecCcceeeeeceeeecCCCCccccccccccceeeeeecceeeccCCCCccccc
Q psy14091        484 IPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLC  563 (694)
Q Consensus       484 ~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  563 (694)
                      .|      .++                                                                     
T Consensus       267 ~p------~~v---------------------------------------------------------------------  271 (406)
T 4d9s_A          267 IP------HKL---------------------------------------------------------------------  271 (406)
T ss_dssp             EE------EEC---------------------------------------------------------------------
T ss_pred             cc------EEe---------------------------------------------------------------------
Confidence            11      000                                                                     


Q ss_pred             ccCCcccccccccccccceeeeeeEEEEecCCcEEEEEECCC-EEEeecCCCCcCCCCCCCCCCCceeecccCCceEEEE
Q psy14091        564 WWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSI  642 (694)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g-v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i  642 (694)
                                       ......+|++|+||.+|++||+++| ||+||+|.+||||.++......|++++.+.+.+|++|
T Consensus       272 -----------------~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v  334 (406)
T 4d9s_A          272 -----------------EALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV  334 (406)
T ss_dssp             -----------------GGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred             -----------------cccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence                             0000125899999999999999999 9999999999999998888889999988777889999


Q ss_pred             ecCCCceEEEecCCcEEEEeCCCCCCCCCCCCCCcCCCeeeccccceec
Q psy14091        643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEIS  691 (694)
Q Consensus       643 s~G~~h~~al~~dG~v~~WG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~  691 (694)
                      +||.+|++||+++|+||+||+|.+||||+|+..++..|+.|+.|..+-.
T Consensus       335 a~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~  383 (406)
T 4d9s_A          335 SCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGA  383 (406)
T ss_dssp             EECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSS
T ss_pred             EeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCc
Confidence            9999999999999999999999999999999999999999998875543
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 694
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-33
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-26
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-23
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-21
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-18
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-08
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-19
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-12
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-08
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-07
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 9e-33
 Identities = 74/425 (17%), Positives = 144/425 (33%), Gaps = 53/425 (12%)

Query: 43  VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTS 102
                   V T G    G LG G  + +  +P  V    +    V     G +HT+ L+ 
Sbjct: 9   SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED----VVQAEAGGMHTVCLSK 64

Query: 103 SG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWG 161
           SG VY++G +  G LG     +             +VV +SAG  H+ A+T  G+++ WG
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 162 WGVHGQLGLNTVEDMSEPQLVKALEHEV-IISAKGGHAHSIALTKAGRVWAFGSGIFGQL 220
                   +  +E M +  +   ++ +V ++    G+ H + LT  G ++  G G  GQL
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 221 GTG----SNTKHKVPIELYGLPEP-------------ISMIATGYFHNLALGTSNRLYTW 263
           G      +N   +  +E   +P+                    G +   A+     +Y +
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 264 GSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASE 323
           G S          +        ++          +             + +         
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKN------STKSWVGFSGGQHHTVCMDSE------ 292

Query: 324 KNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYT 383
             +           L   +       PTL+        +  + CG      ++++GRV+ 
Sbjct: 293 -GKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP---AVSSVACGASVGYAVTKDGRVFA 348

Query: 384 WGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAM 443
           WG   + QLG G  ++  +P  +                  L +  +  ++ GG  ++ +
Sbjct: 349 WGMGTNYQLGTGQDEDAWSPVEMMG--------------KQLENRVVLSVSSGGQHTVLL 394

Query: 444 DESGK 448
            +  +
Sbjct: 395 VKDKE 399
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query694
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.66
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.88
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 90.65
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.23
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 87.71
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-59  Score=499.86  Aligned_cols=384  Identities=27%  Similarity=0.376  Sum_probs=300.9

Q ss_pred             cE-EEEEeCCeEEEEECCCCCccCCCCCCCccCCCeeeeeecCCCCcEEEEEeCCCeEEEEeCCC-eEEEeCCCCCccCC
Q psy14091         41 YH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGI  118 (694)
Q Consensus        41 ~~-~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~p~~i~~~~~~~~~i~~v~~G~~h~~~l~~~G-vy~wG~n~~gqLG~  118 (694)
                      .| ++++.+|+||+||.|.+||||+|........|.+|+.+.    +|++|+||..|+++|+++| ||+||.|.+||||.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~----~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~   81 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE----DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR   81 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS----CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC----CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCc
Confidence            46 899999999999999999999998766566788876543    7999999999999999999 99999999999999


Q ss_pred             CCCCCCCccEEcCCCCCCcEEEEEecCceEEEEEcCCcEEEEeCCCCCCCCCCCCCCC-CCCEEecccCCceEEEEEeCC
Q psy14091        119 GLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDM-SEPQLVKALEHEVIISAKGGH  197 (694)
Q Consensus       119 ~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlg~~~~~~~-~~p~~v~~~~~~~i~~i~~G~  197 (694)
                      +.......|.+.......+|++|+||..|+++++++|+||+||.+..++++....... ..+..+......+|++|+||.
T Consensus        82 g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          82 DTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             CCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred             ccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence            9887776666666666778999999999999999999999999987666554443222 223334444556799999999


Q ss_pred             cEEEEEEcCCeEEEEeCCCCcccCCCCCCCcccceeeccCCCCeEEEEEccCeEEEEecCCcEEEecCCCcccchhhHHH
Q psy14091        198 AHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQ  277 (694)
Q Consensus       198 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~~~~~~~~~~~~~  277 (694)
                      .|+++++++|++|+||.|.+||||............. .+.                                       
T Consensus       162 ~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~-~~~---------------------------------------  201 (401)
T d1a12a_         162 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ-GLE---------------------------------------  201 (401)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG-GHH---------------------------------------
T ss_pred             cceeeeecCCcccccccCCccccCCCCccccccCCcc-ccc---------------------------------------
Confidence            9999999999999999999999997543221111000 000                                       


Q ss_pred             HHhhhhhcccccccccccccccccccCCCCCCceeeeCCCCCcccccccchhhhccccccccccCCCCccccCeee----
Q psy14091        278 KRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLV----  353 (694)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v----  353 (694)
                                                                                          ....|..+    
T Consensus       202 --------------------------------------------------------------------~~~~p~~~~~~~  213 (401)
T d1a12a_         202 --------------------------------------------------------------------RLLVPKCVMLKS  213 (401)
T ss_dssp             --------------------------------------------------------------------HHHSCEECCCBC
T ss_pred             --------------------------------------------------------------------cccccceeeccc
Confidence                                                                                00000000    


Q ss_pred             eccCCCCCeEEEEecCceeEEEeCCccEEEEeCCCCCcCCCCCCcCccCCeeEeecccccccccCcCCCCcccCCCeEEE
Q psy14091        354 DTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHI  433 (694)
Q Consensus       354 ~~~~~~~~i~~I~~G~~h~~aLt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~i~~I  433 (694)
                      .......+|.+|+||..|+++|+++|++|+||.|.+|++|.+.......+.++...              ......+++|
T Consensus       214 ~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~--------------~~~~~~~~~i  279 (401)
T d1a12a_         214 RGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF--------------KNSTKSWVGF  279 (401)
T ss_dssp             SSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGG--------------CCTTCCEEEE
T ss_pred             cCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccc--------------cccceeEEEE
Confidence            00112246999999999999999999999999999999998877665544443211              1334679999


Q ss_pred             EecCceeEEEccCCcEEEEcCCCCCCCCcccccccccccccCCCCCeeEeeccccCCCcceeeeeecccccceeEeeecC
Q psy14091        434 TCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYD  513 (694)
Q Consensus       434 a~G~~ht~alt~~G~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~  513 (694)
                      ++|..|+++++++|+||+||.|.+||||.+.....          ..                                 
T Consensus       280 ~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~----------~~---------------------------------  316 (401)
T d1a12a_         280 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE----------KS---------------------------------  316 (401)
T ss_dssp             EECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC----------EE---------------------------------
T ss_pred             eeeccceeeeccCCCEEEecccccCccCCCccccc----------cc---------------------------------
Confidence            99999999999999999999999999998754322          00                                 


Q ss_pred             cceeeeeceeeecCCCCccccccccccceeeeeecceeeccCCCCcccccccCCcccccccccccccceeeeeeEEEEec
Q psy14091        514 CSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVAC  593 (694)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  593 (694)
                           +|..                                                           +....+|++|+|
T Consensus       317 -----~P~~-----------------------------------------------------------i~~~~~i~~Is~  332 (401)
T d1a12a_         317 -----IPTL-----------------------------------------------------------ISRLPAVSSVAC  332 (401)
T ss_dssp             -----EEEE-----------------------------------------------------------CCSSSSEEEEEE
T ss_pred             -----CCEE-----------------------------------------------------------cCCCCCeEEEEe
Confidence                 0100                                                           011126899999


Q ss_pred             CCcEEEEEECCC-EEEeecCCCCcCCCCCCCCCCCceeecc--cCCceEEEEecCCCceEEEecCCc
Q psy14091        594 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPA--LANIRVVSISAGQYHSLAITSQGK  657 (694)
Q Consensus       594 G~~h~~~l~~~g-v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~is~G~~h~~al~~dG~  657 (694)
                      |.+|++||++|| ||+||.|.+||||+|+..+...|++|..  +.+.+|++|+||.+|++||++||+
T Consensus       333 G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         333 GASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             CSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             eCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence            999999999999 9999999999999999888888988853  456789999999999999999985
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure