Psyllid ID: psy14094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHEEHEccccccHHHHHcccccHHHHHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKpkmcsflewkDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELllggeiqeTSKKNVLKAIAAQDLLQE
Flexible Loop (DISEMBL)
MYEYLLNMQFMLLFSRQGKLRLQKWYVahpdklkkkiTRELITTilarkpkmcsflewKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE
Low Complexity Region (SEG)
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE
Disordered region (IsUnstruct)
**EYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQET***NVLK**********
Disordered Region (DISOPRED)
***YLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQD****
Disordered Region (DISEMBL)
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE
Disordered Region (DISPRO)
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9DB50	160	AP-1 complex subunit sigm	yes	N/A	0.953	0.887	0.880	8e-69
Q3ZBS3	160	AP-1 complex subunit sigm	yes	N/A	0.953	0.887	0.880	8e-69
P56377	157	AP-1 complex subunit sigm	yes	N/A	0.953	0.904	0.880	9e-69
P61967	158	AP-1 complex subunit sigm	no	N/A	0.953	0.898	0.802	1e-64
P61966	158	AP-1 complex subunit sigm	no	N/A	0.953	0.898	0.802	1e-64
Q1JQ98	157	AP-1 complex subunit sigm	no	N/A	0.953	0.904	0.802	1e-64
Q7TN05	154	AP-1 complex subunit sigm	no	N/A	0.953	0.922	0.739	2e-59
Q96PC3	154	AP-1 complex subunit sigm	no	N/A	0.953	0.922	0.739	5e-59
O23685	162	AP-1 complex subunit sigm	yes	N/A	0.953	0.876	0.640	4e-50
Q8LEZ8	161	AP-1 complex subunit sigm	yes	N/A	0.953	0.881	0.633	2e-49

>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1

 Score =  258 bits (659), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           E+QETSKKNVLKAI   DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Mus musculus (taxid: 10090)

>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1

 Score =  258 bits (659), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           E+QETSKKNVLKAI   DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Bos taurus (taxid: 9913)

>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1

 Score =  258 bits (659), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           E+QETSKKNVLKAI   DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 130/142 (91%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           M+FMLLFSRQGKLRLQKWY+A  DK +KK+ REL+  +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           ++Q+TSKK+VLKAI   DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 130/142 (91%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           M+FMLLFSRQGKLRLQKWY+A  DK +KK+ REL+  +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           ++Q+TSKK+VLKAI   DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 130/142 (91%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           M+FMLLFSRQGKLRLQKWY+A  DK +KK+ REL+  +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 1   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 61  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           ++Q+TSKK+VLKAI   DLLQE
Sbjct: 121 DVQDTSKKSVLKAIEQADLLQE 142

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Bos taurus (taxid: 9913)

>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 124/142 (87%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           + F+LLFSRQGKLRLQKWY   PDK +KKITR++I T+L+R  +  SF++WK++K+VYKR
Sbjct: 2   IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNELLTLEI+HRYVELLDKYFG+VCELDIIFNFEKAYFILDE ++GG
Sbjct: 62  YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKK  +KAI   D+LQE
Sbjct: 122 EIQETSKKTAVKAIEDSDMLQE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1

 Score =  226 bits (575), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 124/142 (87%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           + F+LLFSRQGKLRLQKWY+  PDK +KKITRE++  IL+R  +  SF++WK++K+VYKR
Sbjct: 2   IHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNELLTLEI+HRYVELLDKYFG+VCELDIIFNFEKAYFILDE ++GG
Sbjct: 62  YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKK  +KAI   D+LQE
Sbjct: 122 EIQETSKKIAVKAIEDSDMLQE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 112/142 (78%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           + F+LL SRQGK+RL KWY  +  K + K+ REL   IL R PK+C+F+EW+  K+VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFC  I+Q DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDELL+ G
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           E+QE+SKK V + I+AQD L E
Sbjct: 122 ELQESSKKTVARIISAQDQLVE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=2 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 112/142 (78%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           + F+LL SRQGK+RL KWY  +  K + K+ REL   IL R PK+C+F+EW+  K+VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFC  I++ DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDELL+ G
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           E+QE+SKK V + I+AQD L E
Sbjct: 122 ELQESSKKTVARIISAQDQLVE 143

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
332031261	174	AP-1 complex subunit sigma-2 [Acromyrmex	0.953	0.816	0.978	2e-75
380021751	156	PREDICTED: AP-1 complex subunit sigma-2-	0.953	0.910	0.978	3e-75
322783248	160	hypothetical protein SINV_15865 [Solenop	0.953	0.887	0.978	3e-75
340712919	157	PREDICTED: AP-1 complex subunit sigma-2-	0.953	0.904	0.978	4e-75
307209094	171	AP-1 complex subunit sigma-2 [Harpegnath	0.966	0.842	0.972	5e-75
380021753	156	PREDICTED: AP-1 complex subunit sigma-2-	0.953	0.910	0.978	5e-75
242011938	152	clathrin coat assembly protein ap19, put	0.953	0.934	0.957	1e-74
332373248	157	unknown [Dendroctonus ponderosae]	0.953	0.904	0.971	1e-74
157113053	148	clathrin coat assembly protein ap19 [Aed	0.953	0.959	0.964	1e-74
157113051	150	clathrin coat assembly protein ap19 [Aed	0.953	0.946	0.964	1e-74

>gi|332031261|gb|EGI70795.1| AP-1 complex subunit sigma-2 [Acromyrmex echinatior]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VYKR
Sbjct: 19  MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVYKR 78

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 79  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 138

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 139 EIQETSKKNVLKAIAAQDLLQE 160

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021751|ref|XP_003694721.1| PREDICTED: AP-1 complex subunit sigma-2-like isoform 1 [Apis florea] gi|383859038|ref|XP_003705005.1| PREDICTED: AP-1 complex subunit sigma-2-like isoform 2 [Megachile rotundata]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 61  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 121 EIQETSKKNVLKAIAAQDLLQE 142

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783248|gb|EFZ10834.1| hypothetical protein SINV_15865 [Solenopsis invicta]

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VYKR
Sbjct: 15  MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVYKR 74

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 75  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 134

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 135 EIQETSKKNVLKAIAAQDLLQE 156

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712919|ref|XP_003395000.1| PREDICTED: AP-1 complex subunit sigma-2-like [Bombus terrestris] gi|345488710|ref|XP_001607148.2| PREDICTED: AP-1 complex subunit sigma-2-like [Nasonia vitripennis] gi|350419517|ref|XP_003492210.1| PREDICTED: AP-1 complex subunit sigma-2-like [Bombus impatiens] gi|307181019|gb|EFN68793.1| AP-1 complex subunit sigma-2 [Camponotus floridanus]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VYKR
Sbjct: 2   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 62  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 122 EIQETSKKNVLKAIAAQDLLQE 143

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209094|gb|EFN86251.1| AP-1 complex subunit sigma-2 [Harpegnathos saltator]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/144 (97%), Positives = 142/144 (98%)

Query: 6   LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVY 65
           L MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VY
Sbjct: 18  LQMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVY 77

Query: 66  KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
           KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+
Sbjct: 78  KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLV 137

Query: 126 GGEIQETSKKNVLKAIAAQDLLQE 149
           GGEIQETSKKNVLKAIAAQDLLQE
Sbjct: 138 GGEIQETSKKNVLKAIAAQDLLQE 161

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021753|ref|XP_003694722.1| PREDICTED: AP-1 complex subunit sigma-2-like isoform 2 [Apis florea] gi|383859036|ref|XP_003705004.1| PREDICTED: AP-1 complex subunit sigma-2-like isoform 1 [Megachile rotundata]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM SFLEWKDVK+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMSSFLEWKDVKVVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 61  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 121 EIQETSKKNVLKAIAAQDLLQE 142

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011938|ref|XP_002426700.1| clathrin coat assembly protein ap19, putative [Pediculus humanus corporis] gi|212510871|gb|EEB13962.1| clathrin coat assembly protein ap19, putative [Pediculus humanus corporis]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDK+KKKITRELITTILARKPKMCSFLEWKD+K+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVAHPDKVKKKITRELITTILARKPKMCSFLEWKDMKVVYKR 60

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQ DNELLTLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEL+LGG
Sbjct: 61  YASLYFCCAIEQQDNELLTLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELMLGG 120

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 121 EIQETSKKNVLKAIAAQDLLQE 142

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373248|gb|AEE61765.1| unknown [Dendroctonus ponderosae]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/142 (97%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW+D+KIVYKR
Sbjct: 2   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWRDLKIVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQ DNELLTLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG
Sbjct: 62  YASLYFCCAIEQEDNELLTLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQDLLQE
Sbjct: 122 EIQETSKKNVLKAIAAQDLLQE 143

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113053|ref|XP_001657744.1| clathrin coat assembly protein ap19 [Aedes aegypti] gi|108883714|gb|EAT47939.1| AAEL000983-PB [Aedes aegypti]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDK+KKKITRELITTIL+RKPKMCSFLEWKD KIVYKR
Sbjct: 2   MQFMLLFSRQGKLRLQKWYVAHPDKVKKKITRELITTILSRKPKMCSFLEWKDCKIVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 62  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQD+LQE
Sbjct: 122 EIQETSKKNVLKAIAAQDVLQE 143

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113051|ref|XP_001657743.1| clathrin coat assembly protein ap19 [Aedes aegypti] gi|108883713|gb|EAT47938.1| AAEL000983-PE [Aedes aegypti]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 141/142 (99%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           MQFMLLFSRQGKLRLQKWYVAHPDK+KKKITRELITTIL+RKPKMCSFLEWKD KIVYKR
Sbjct: 2   MQFMLLFSRQGKLRLQKWYVAHPDKVKKKITRELITTILSRKPKMCSFLEWKDCKIVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct: 62  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLVGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EIQETSKKNVLKAIAAQD+LQE
Sbjct: 122 EIQETSKKNVLKAIAAQDVLQE 143

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0039132	164	AP-1sigma "Adaptor Protein com	0.953	0.865	0.943	3e-69
WB|WBGene00000159	157	aps-1 [Caenorhabditis elegans	0.953	0.904	0.887	3.2e-65
UNIPROTKB|F1NHS7	145	AP1S2 "Uncharacterized protein	0.953	0.979	0.880	4.7e-64
UNIPROTKB|F1NHS8	142	AP1S2 "Uncharacterized protein	0.953	1.0	0.880	4.7e-64
UNIPROTKB|Q3ZBS3	160	AP1S2 "AP-1 complex subunit si	0.953	0.887	0.880	4.7e-64
UNIPROTKB|F1PR34	157	AP1S2 "Uncharacterized protein	0.953	0.904	0.880	4.7e-64
UNIPROTKB|A6NH01	160	AP1S2 "AP-1 complex subunit si	0.953	0.887	0.880	4.7e-64
UNIPROTKB|B4DSU4	202	AP1S2 "AP-1 complex subunit si	0.953	0.702	0.880	4.7e-64
UNIPROTKB|B7Z3M9	195	AP1S2 "AP-1 complex subunit si	0.953	0.728	0.880	4.7e-64
UNIPROTKB|P56377	157	AP1S2 "AP-1 complex subunit si	0.953	0.904	0.880	4.7e-64

FB|FBgn0039132 AP-1sigma "Adaptor Protein complex 1, sigma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 134/142 (94%), Positives = 140/142 (98%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             M FMLLFSRQGKLRLQKWY+A+PDK+KKKITREL+TTILARKPKMCSFLEWKD KIVYKR
Sbjct:     2 MLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFLEWKDCKIVYKR 61

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL+GG
Sbjct:    62 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLIGG 121

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             EIQETSKKNVLKAIA+QDLLQE
Sbjct:   122 EIQETSKKNVLKAIASQDLLQE 143

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0006901 "vesicle coating" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048749 "compound eye development" evidence=IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP

GO:0046907 "intracellular transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0035976 "AP1 complex" evidence=IMP

WB|WBGene00000159 aps-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 126/142 (88%), Positives = 135/142 (95%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQ+MLLFSRQGKLRLQKWY A+PDK KKKI RELIT ILARKPKMC+FLE+KD+K+VYKR
Sbjct:     2 MQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYKR 61

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIEQNDNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LL G
Sbjct:    62 YASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAG 121

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             EIQETSKK VLKAIAAQDL+QE
Sbjct:   122 EIQETSKKQVLKAIAAQDLIQE 143

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

UNIPROTKB|F1NHS7 AP1S2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F1NHS8 AP1S2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|Q3ZBS3 AP1S2 "AP-1 complex subunit sigma-2" [Bos taurus (taxid:9913)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1PR34 AP1S2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|A6NH01 AP1S2 "AP-1 complex subunit sigma-2" [Homo sapiens (taxid:9606)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|B4DSU4 AP1S2 "AP-1 complex subunit sigma-2" [Homo sapiens (taxid:9606)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:    43 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 102

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:   103 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 162

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   163 EVQETSKKNVLKAIEQADLLQE 184

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|B7Z3M9 AP1S2 "AP-1 complex subunit sigma-2" [Homo sapiens (taxid:9606)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:    43 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 102

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:   103 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 162

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   163 EVQETSKKNVLKAIEQADLLQE 184

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|P56377 AP1S2 "AP-1 complex subunit sigma-2" [Homo sapiens (taxid:9606)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/142 (88%), Positives = 131/142 (92%)

Query:     8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
             MQFMLLFSRQGKLRLQKWYV   DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
             YASLYFCCAIE  DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   128 EIQETSKKNVLKAIAAQDLLQE 149
             E+QETSKKNVLKAI   DLLQE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQE 142

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0030119 "AP-type membrane coat adaptor complex" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030659 "cytoplasmic vesicle membrane" evidence=TAS

GO:0032588 "trans-Golgi network membrane" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DB50	AP1S2_MOUSE	No assigned EC number	0.8802	0.9530	0.8875	yes	N/A
Q1JQ98	AP1S1_BOVIN	No assigned EC number	0.8028	0.9530	0.9044	no	N/A
P35181	AP1S1_YEAST	No assigned EC number	0.5510	0.9731	0.9294	yes	N/A
Q7TN05	AP1S3_MOUSE	No assigned EC number	0.7394	0.9530	0.9220	no	N/A
O23685	AP1S2_ARATH	No assigned EC number	0.6408	0.9530	0.8765	yes	N/A
Q8LEZ8	AP1S1_ARATH	No assigned EC number	0.6338	0.9530	0.8819	yes	N/A
Q9P7N2	AP1S1_SCHPO	No assigned EC number	0.5902	0.9664	0.8888	yes	N/A
Q96PC3	AP1S3_HUMAN	No assigned EC number	0.7394	0.9530	0.9220	no	N/A
P56377	AP1S2_HUMAN	No assigned EC number	0.8802	0.9530	0.9044	yes	N/A
Q3ZBS3	AP1S2_BOVIN	No assigned EC number	0.8802	0.9530	0.8875	yes	N/A
P61966	AP1S1_HUMAN	No assigned EC number	0.8028	0.9530	0.8987	no	N/A
P61967	AP1S1_MOUSE	No assigned EC number	0.8028	0.9530	0.8987	no	N/A
B0G185	AP1S2_DICDI	No assigned EC number	0.5972	0.9664	0.9350	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	3e-66
COG5030	152	COG5030, APS2, Clathrin adaptor complex, small sub	8e-61

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score =  197 bits (503), Expect = 3e-66
 Identities = 77/141 (54%), Positives = 107/141 (75%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++ +L+F+RQGK RL KWY  + D  ++K+  ++   I ARKPKM +F+E+ D+K++YKR
Sbjct: 2   IKAILIFNRQGKPRLAKWYTPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA+LYF   ++  DNEL+ LE+IHR+VE LD+YFG+VCELD+IFNFEK Y ILDE+++GG
Sbjct: 62  YATLYFVVIVDDQDNELIILELIHRFVESLDRYFGNVCELDLIFNFEKVYLILDEMVMGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQ 148
           EI ETSK  VL  +A  D L 
Sbjct: 122 EILETSKNEVLHRVALLDELA 142

Length = 142

>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

 Score =  184 bits (468), Expect = 8e-61
 Identities = 74/142 (52%), Positives = 105/142 (73%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++F+L+F+RQGK RL KWY    D  + K+  ++   I ARKPK  +F+E K+ KIVY+R
Sbjct: 2   IKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA+LYF   ++ +DNEL+ LE+IH +VE+LD++FG+VCELD+IFNF+K Y ILDE++LGG
Sbjct: 62  YATLYFVFGVDNDDNELIILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EI E+SK  VL+ + A D    
Sbjct: 122 EIIESSKNEVLEHVYALDAEST 143

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG0934|consensus	145		100.0
KOG0936|consensus	182		100.0
KOG0935|consensus	143		100.0
KOG0938|consensus	446		99.97
KOG3343|consensus	175		99.97
KOG0937|consensus	424		99.94
KOG2740|consensus	418		99.91
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.85
KOG2635|consensus	512		99.47
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	97.08
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.02
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	95.66
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	95.03
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	94.48
KOG0997|consensus	523		92.77
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	91.93
KOG0859|consensus	217		91.54
KOG0862|consensus	216		87.98
KOG3368|consensus	140		84.24
KOG0781|consensus	587		81.28
PF08006	181	DUF1700: Protein of unknown function (DUF1700); In	81.04

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=3.3e-42  Score=251.69  Aligned_cols=141  Identities=40%  Similarity=0.680  Sum_probs=131.1

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT   86 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i   86 (149)
                      ||+|++|+|++|+++++|||++.+.+++++++.++.+.+..++++.+|++.+++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~   80 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL   80 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence            89999999999999999999888887778888888888877777779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhh
Q psy14094         87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLL  147 (149)
Q Consensus        87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~  147 (149)
                      +++||+++++|+.|||+++|.++++||+.+|++|||++|+|+|++||++.|++|++++|++
T Consensus        81 ~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~~~  141 (141)
T PF01217_consen   81 LEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQDSA  141 (141)
T ss_dssp             HHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCCC-
T ss_pred             HHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-37  Score=223.07  Aligned_cols=141  Identities=52%  Similarity=0.935  Sum_probs=136.1

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT   86 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i   86 (149)
                      ||++++|+|++|+++|.|||.+.+.+++..+.+++++.+++|+++.+++++..+.++|||||++|||+++++.++|||++
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~i   80 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELII   80 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchH
Confidence            79999999999999999999999988888999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhh
Q psy14094         87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLL  147 (149)
Q Consensus        87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~  147 (149)
                      ++.+|.|+++++.|||+|||.++++||.++|.+||||+.+|.++||+++.+.+++...++.
T Consensus        81 L~lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~  141 (152)
T COG5030          81 LELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAE  141 (152)
T ss_pred             HHHHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999877654

>KOG0934|consensus

Probab=100.00  E-value=2e-36  Score=216.50  Aligned_cols=142  Identities=75%  Similarity=1.194  Sum_probs=138.1

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT   86 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i   86 (149)
                      ||+++++.+++|+++|+|||.+.+.++++..++++.+.+.+|++++|+++++++++.||||+++|||+++...++|||++
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~   80 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI   80 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094         87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ  148 (149)
Q Consensus        87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~  148 (149)
                      +|++|+++++|++|||+|||.+|++||.++|.+|||.+-+|-.+||..+.....+.++|-++
T Consensus        81 LE~IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad~l~  142 (145)
T KOG0934|consen   81 LEFIHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQADLLQ  142 (145)
T ss_pred             HHHHHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999988765

>KOG0936|consensus

Probab=100.00  E-value=3.8e-35  Score=213.40  Aligned_cols=143  Identities=36%  Similarity=0.711  Sum_probs=137.1

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEe----C--CEEEEEEEeCcEEEEEEecCC
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW----K--DVKIVYKRYASLYFCCAIEQN   80 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~----~--~~~~vy~~~~~Lyfv~v~~~~   80 (149)
                      ||+|++|+|++|+|+++|+|.+...+.|+.+.++.|..+++|++.+|++++.    +  +.+++||+|+.|||+.+.|+.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s   80 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS   80 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence            8999999999999999999999999889999999999999999888999863    3  789999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhcC
Q psy14094         81 DNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE  149 (149)
Q Consensus        81 ~n~l~ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~~  149 (149)
                      ||||+++++++.|+++|+++|.++||.++++|+.+++.+|+|++.+|.++||+.+.|...+..|+|+.|
T Consensus        81 EsEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nklek  149 (182)
T KOG0936|consen   81 ESELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKLEK  149 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999988763

>KOG0935|consensus

Probab=100.00  E-value=3.7e-34  Score=200.91  Aligned_cols=142  Identities=46%  Similarity=0.822  Sum_probs=130.6

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEE-EEEEEeCcEEEEEEecCCCCHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVK-IVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~-~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      ||+++++.|++|+++++|||.+..++++.+.+.++++.+..|+++..++++..+.+ ..+|++++|||+.+++..+|+++
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnela   80 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELA   80 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHH
Confidence            89999999999999999999988887788899999999999988865556555555 45559999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ  148 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~  148 (149)
                      .++-+|.|+++|+.||+++||.++.+||.+||.++|||+-+|.++||+...+.+|+...++++
T Consensus        81 yLe~IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~~Le  143 (143)
T KOG0935|consen   81 YLEHIHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQSLE  143 (143)
T ss_pred             HHHHHHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999988874

>KOG0938|consensus

Probab=99.97  E-value=1.3e-31  Score=216.65  Aligned_cols=134  Identities=18%  Similarity=0.257  Sum_probs=122.3

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHH-hhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITT-ILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      ||+++||+|.+|+++++|.||++..+..    .++|+. +.+..+..||+..+++++|+|.++++||++++|.+|.|.++
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~----~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~   76 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSI----VDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAA   76 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhH----HHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence            8999999999999999999998855443    334443 34445667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ  144 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~  144 (149)
                      ++|||..+++++++|||..+|+.|++||.++||+||||+|+||||+|+|+.++..|+++
T Consensus        77 v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~  135 (446)
T KOG0938|consen   77 VFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQK  135 (446)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999876

>KOG3343|consensus

Probab=99.97  E-value=4.2e-30  Score=188.12  Aligned_cols=139  Identities=22%  Similarity=0.362  Sum_probs=127.5

Q ss_pred             cccchhceeEEEeCCCCEEEEecCCCCC---hhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecC
Q psy14094          3 EYLLNMQFMLLFSRQGKLRLQKWYVAHP---DKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQ   79 (149)
Q Consensus         3 ~~~~mi~~i~iln~~G~~ll~k~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~   79 (149)
                      ..++.+++++|+|++|+|+++|||.++.   .++++++|+.+|+++.+ ++  +.|..++|...||+..-||+|+++++.
T Consensus         4 ~sly~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~k-t~--~eI~~ldg~~vvYk~~~Dl~fyv~G~~   80 (175)
T KOG3343|consen    4 LSLYTVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSK-TE--SEILLLDGNTVVYKSVIDLHFYVVGSE   80 (175)
T ss_pred             cchhhhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccccc-cc--ceeEEecCcEEEEEecccEEEEEecCc
Confidence            4578999999999999999999999864   46889999999988754 22  568999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc-cCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094         80 NDNELLTLEIIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ  144 (149)
Q Consensus        80 ~~n~l~ile~L~~lv~~l~~yf~~-v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~  144 (149)
                      +|||+++.+.|+++.+++...+++ +....+.+|++.+..++||++|+|+++||||+.|+.|+...
T Consensus        81 ~ENEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~  146 (175)
T KOG3343|consen   81 EENELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALR  146 (175)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccC
Confidence            999999999999999999999975 78889999999999999999999999999999999998754

>KOG0937|consensus

Probab=99.94  E-value=1.2e-26  Score=192.92  Aligned_cols=134  Identities=16%  Similarity=0.247  Sum_probs=119.2

Q ss_pred             hceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhc--cCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILA--RKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         8 i~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      ++++|++|.+|+++++|.||++.+....  +.. +++...  ..+..+|++.++|.+|+|.++++||++++++.|.|+..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~~s~~--~~F-~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~   77 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVPMSST--EKF-FRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAAL   77 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCChhhh--hhH-HHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHH
Confidence            4799999999999999999998764442  222 223222  23446899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ  144 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~  144 (149)
                      +++||+++++++.+||+.+.|..+++||+++||+|||++|+||||+|++++++++|+++
T Consensus        78 v~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~  136 (424)
T KOG0937|consen   78 VLSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK  136 (424)
T ss_pred             HHHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999876

>KOG2740|consensus

Probab=99.91  E-value=2.3e-24  Score=175.59  Aligned_cols=135  Identities=20%  Similarity=0.230  Sum_probs=115.5

Q ss_pred             hhceeEEEeCCCCEEEEecCCC-CChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVA-HPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      |+.++|+.|.+|+.+++|.+++ ...+..++.+.+.+..- .+.++.+|++....+.+.-.-+.++||++++..+..||+
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~~~-~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~   79 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQSSD-DDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLM   79 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhhhc-cccccCCceecCCceeeeeeeccCcEEEEEEeccCCChh
Confidence            7899999999999999999995 34455444444433331 234556788877777777777888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHH
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIA  142 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~  142 (149)
                      +.+|||++++++.+|||.++|..|.+|++.|||+||||+|+|+|..|||++|++.|+
T Consensus        80 ~iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~  136 (418)
T KOG2740|consen   80 VIEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIP  136 (418)
T ss_pred             HHHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999875

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.4e-21  Score=141.89  Aligned_cols=140  Identities=18%  Similarity=0.249  Sum_probs=124.5

Q ss_pred             CccccchhceeEEEeCCCCEEEEecCCCCCh-----------hhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeC
Q psy14094          1 MYEYLLNMQFMLLFSRQGKLRLQKWYVAHPD-----------KLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYA   69 (149)
Q Consensus         1 ~~~~~~mi~~i~iln~~G~~ll~k~y~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~   69 (149)
                      |.-.++.+.|++|+|++|++++.|||.+++.           ++++++++.++++..+.   +.+|+.+.+...+|+++.
T Consensus         1 MnlsLy~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~---~~~Il~f~d~lV~~k~~~   77 (187)
T COG5541           1 MNLSLYDVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD---RESILMFYDRLVMCKRLD   77 (187)
T ss_pred             CCcchheeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcC---ccceeeEcceeeeeeeeh
Confidence            4445778999999999999999999998643           35667888888876432   246899999999999999


Q ss_pred             cEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhccc-CHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHH
Q psy14094         70 SLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSV-CELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAA  143 (149)
Q Consensus        70 ~Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~~v-~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~  143 (149)
                      |+.++.++.-++||.++.+.+..+..+|...++.. ++..+.+|++.+..++||.+|+|.+++|+++.|++|++.
T Consensus        78 dv~~yiv~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K  152 (187)
T COG5541          78 DVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPK  152 (187)
T ss_pred             hEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCC
Confidence            99999999999999999999999999999999986 566799999999999999999999999999999999975

>KOG2635|consensus

Probab=99.47  E-value=4.4e-13  Score=112.21  Aligned_cols=135  Identities=17%  Similarity=0.245  Sum_probs=121.8

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      |++-+.-+.+.+|+.+++|.|++++..+...+...|.+.+.  ..+++.+++-++++|||++..++|++.+|..+.|.|-
T Consensus         1 Mvvlaa~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~--~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIle   78 (512)
T KOG2635|consen    1 MVVLAASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVS--AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILE   78 (512)
T ss_pred             CeEEEEEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhc--cCCCccEEecccEEEEEEecccEEEEEEeccccchhh
Confidence            45667889999999999999998877777777788776654  2456789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHH
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIA  142 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~  142 (149)
                      .++.|+.|..+...|+..++|+.|.+|---+...+||++--||-...+-.+|+.+..
T Consensus        79 Dl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~e  135 (512)
T KOG2635|consen   79 DLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLE  135 (512)
T ss_pred             HHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhc
Confidence            999999999999999999999999999888899999999999999999999988865

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=97.08  E-value=0.011  Score=50.54  Aligned_cols=89  Identities=10%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             ceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhh---ccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          9 QFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTIL---ARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         9 ~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~---~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      +.+||+++-|||+.+||  ++. .....+..-+...++   ...+. ---+..+++++++..++-||++++++.+|++..
T Consensus        12 kh~fIlS~AGKPIysr~--G~e-~~l~~~~g~~~aiiS~~~~~~d~-l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~   87 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY--GDE-DKLSSLMGVIQAIISFFQSNGDE-LRSIRAGDHRIVFLNRGPLILVAVSKTGESESQ   87 (415)
T ss_pred             CeEEEECCCCceeEEec--CCh-HHHHHHHHHHHHHHHHHHhCCCc-EEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHH
Confidence            67999999999999999  321 112222222222221   22222 123467999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy14094         86 TLEIIHRYVELLDKYF  101 (149)
Q Consensus        86 ile~L~~lv~~l~~yf  101 (149)
                      +..-|+.+..-+-..+
T Consensus        88 l~~qL~~ly~qils~l  103 (415)
T PF03164_consen   88 LRKQLDYLYSQILSIL  103 (415)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8777776665554444

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.02  E-value=0.059  Score=41.39  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=71.1

Q ss_pred             CCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcccCH-HHHHhcHHHHHHHHHHHHhCcEeeecCHHHH
Q psy14094         59 KDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE-LDIIFNFEKAYFILDELLLGGEIQETSKKNV  137 (149)
Q Consensus        59 ~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~~v~E-~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i  137 (149)
                      +....+|....++-|..|++..||-++.-.+|+.++..+.++++.++. ..+...-+.|..+|+..+=.|--+--+.+.+
T Consensus       102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~  181 (189)
T PF15001_consen  102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFV  181 (189)
T ss_pred             CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHH
Confidence            456789999999999999999999999999999999999999977544 5677789999999999999998888887765


Q ss_pred             HH
Q psy14094        138 LK  139 (149)
Q Consensus       138 ~~  139 (149)
                      +.
T Consensus       182 k~  183 (189)
T PF15001_consen  182 KQ  183 (189)
T ss_pred             HH
Confidence            43

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.66  E-value=0.21  Score=35.54  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCChh-hHHHHHHHHHHHhh--cc--CCC-ccceeEeCCEEEEEEEeCcEEEEEEecC
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPDK-LKKKITRELITTIL--AR--KPK-MCSFLEWKDVKIVYKRYASLYFCCAIEQ   79 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~~-~~~~~~~~~~~~~~--~~--~~~-~~pi~~~~~~~~vy~~~~~Lyfv~v~~~   79 (149)
                      +-+.+++|-|++|=+++.=...+.... -+..+..-+-....  ++  -.+ ..-+..++++.+++.....+|+..++++
T Consensus        15 ~Gl~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~   94 (119)
T PF08923_consen   15 DGLQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASS   94 (119)
T ss_dssp             TTEEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEET
T ss_pred             CCeEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecC
Confidence            357899999999999888555443221 11223322211111  11  011 2345578999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy14094         80 NDNELLTLEIIHRYVELLDK   99 (149)
Q Consensus        80 ~~n~l~ile~L~~lv~~l~~   99 (149)
                      +.|--+++++-+.+...++.
T Consensus        95 ~aN~G~il~l~~~L~~~l~~  114 (119)
T PF08923_consen   95 NANTGLILSLEEELAPILNE  114 (119)
T ss_dssp             TS-HHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhHHHHHHHHHH
Confidence            99999999998888887764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=95.03  E-value=0.33  Score=35.40  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             hceeEEEeCCCCEEEEecCCCCC--------hhhHHHHHHHH------HHHhhccCC-----Ccc--ceeEeCCEEE-EE
Q psy14094          8 MQFMLLFSRQGKLRLQKWYVAHP--------DKLKKKITREL------ITTILARKP-----KMC--SFLEWKDVKI-VY   65 (149)
Q Consensus         8 i~~i~iln~~G~~ll~k~y~~~~--------~~~~~~~~~~~------~~~~~~~~~-----~~~--pi~~~~~~~~-vy   65 (149)
                      |.+++|+|+.|..+..|-|....        ..+...+..-+      .+++.....     ..+  ..++.+.+++ .|
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            46799999999999999887532        12222222222      122222110     112  2345567764 67


Q ss_pred             EEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHh-cc
Q psy14094         66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYF-GS  103 (149)
Q Consensus        66 ~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf-~~  103 (149)
                      ....++-|+++++.+...+ .-++++.+.++.-+|. ++
T Consensus        81 eT~TGlKFvl~td~~~~~~-~~~l~~~~~~lY~dyV~KN  118 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPSL-RDELLRIYYELYVDYVVKN  118 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCHC-HHHHHHHHHHHHHHHHHS-
T ss_pred             EcCcCcEEEEEecCCCccH-HHHHHHHHHHHHHHHHhhC
Confidence            7788999999999998643 5567888888888886 54

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=94.48  E-value=0.75  Score=29.96  Aligned_cols=49  Identities=8%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             ceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q psy14094         54 SFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFG  102 (149)
Q Consensus        54 pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~  102 (149)
                      -.++.+++.|-|...+++.++++++.+.+.-..+.||+.+.+-+..-++
T Consensus        17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            3567899999999999999999999999999999999999998888877

...

>KOG0997|consensus

Probab=92.77  E-value=1.5  Score=38.35  Aligned_cols=80  Identities=9%  Similarity=0.044  Sum_probs=52.4

Q ss_pred             ceeEEEeCCCCEEEEecCCCCCh---hhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          9 QFMLLFSRQGKLRLQKWYVAHPD---KLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         9 ~~i~iln~~G~~ll~k~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      +.+||+.+-|+++++++=.....   -......-.+++.    +...--.+..+|+++++-+.+-|++++++..+.++-.
T Consensus       118 khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~----~~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~q  193 (523)
T KOG0997|consen  118 KHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQV----SGLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQ  193 (523)
T ss_pred             ceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhh----CCceEEEEEecCceEEEEecCcEEEEEEcccccCHHH
Confidence            46999999999999998654321   1111112222222    1111223456889999999999999999998887766


Q ss_pred             HHHHHHH
Q psy14094         86 TLEIIHR   92 (149)
Q Consensus        86 ile~L~~   92 (149)
                      +..-|..
T Consensus       194 L~~qL~~  200 (523)
T KOG0997|consen  194 LLQQLLL  200 (523)
T ss_pred             HHHHHHH
Confidence            5554443

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=91.93  E-value=1.3  Score=31.38  Aligned_cols=94  Identities=11%  Similarity=0.240  Sum_probs=57.0

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCCh-hhHHH------HHHHHHHHhhccCC--Ccc--ceeEeCCE-EEEEEEeCcEEE
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPD-KLKKK------ITRELITTILARKP--KMC--SFLEWKDV-KIVYKRYASLYF   73 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~-~~~~~------~~~~~~~~~~~~~~--~~~--pi~~~~~~-~~vy~~~~~Lyf   73 (149)
                      |.+.+++|+|+.|-.++.|-|..... -...+      ....++.....-.+  ..+  -++..+.. -.+|+...++-|
T Consensus         1 mave~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kF   80 (134)
T COG5122           1 MAVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKF   80 (134)
T ss_pred             CceeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEE
Confidence            35678999999999999999954321 11100      01111111100001  112  23455654 479999999999


Q ss_pred             EEEe-cCCCCHHHHHHHHHHHHHHHHHHhc
Q psy14094         74 CCAI-EQNDNELLTLEIIHRYVELLDKYFG  102 (149)
Q Consensus        74 v~v~-~~~~n~l~ile~L~~lv~~l~~yf~  102 (149)
                      |+++ +...|.+.-   |+++++...+|.-
T Consensus        81 V~~~~k~t~na~~q---l~kiY~lYsdYV~  107 (134)
T COG5122          81 VFVAEKRTVNALFQ---LQKIYSLYSDYVT  107 (134)
T ss_pred             EEEecCCchhHHHH---HHHHHHHHHHHhh
Confidence            9999 555665544   7788888888873

>KOG0859|consensus

Probab=91.54  E-value=5.4  Score=31.02  Aligned_cols=90  Identities=12%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             eEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHH
Q psy14094         11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEII   90 (149)
Q Consensus        11 i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L   90 (149)
                      ++=+=.+|-++|+++=.-...  -...-+.+.++++..++ ..--..+|++.|-|.+-+++.++++++.+..--.-+.||
T Consensus         4 iYs~VARGTvvLaeft~~~gN--f~sva~qiL~klp~~~n-~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    4 IYSFVARGTVILAEFTEFSGN--FSSIAAQILQKLPSSSN-SKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             eEEEEecceEEEEeeeeccCC--HHHHHHHHHHhCCCCCC-CceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            344457999999997542221  11234466666655432 122456899999999999999999999998888888899


Q ss_pred             HHHHHHHHHHhcc
Q psy14094         91 HRYVELLDKYFGS  103 (149)
Q Consensus        91 ~~lv~~l~~yf~~  103 (149)
                      .++-+-+.+=+|.
T Consensus        81 e~Ik~~F~k~YG~   93 (217)
T KOG0859|consen   81 ERIKEDFKKRYGG   93 (217)
T ss_pred             HHHHHHHHHHhcc
Confidence            8887776666653

>KOG0862|consensus

Probab=87.98  E-value=11  Score=29.51  Aligned_cols=87  Identities=13%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCCCEEEEec---CCCC-ChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHH
Q psy14094         16 RQGKLRLQKW---YVAH-PDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIH   91 (149)
Q Consensus        16 ~~G~~ll~k~---y~~~-~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~   91 (149)
                      .+|-|+-+-.   .++. +..+-++-.+.+++++...++..|+ ++.|++.|-|.-.+++.+.+.++.+.+--+.+.+|+
T Consensus        11 ~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~S-ietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLe   89 (216)
T KOG0862|consen   11 RDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCS-IETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLE   89 (216)
T ss_pred             cCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccc-cccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHH
Confidence            4666665442   1121 2133444456667666543333333 456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy14094         92 RYVELLDKYFGS  103 (149)
Q Consensus        92 ~lv~~l~~yf~~  103 (149)
                      .+.+-+.+-+++
T Consensus        90 dL~~EF~~~~~~  101 (216)
T KOG0862|consen   90 DLAQEFDKSYGK  101 (216)
T ss_pred             HHHHHHHHhccc
Confidence            999999998875

>KOG3368|consensus

Probab=84.24  E-value=11  Score=27.45  Aligned_cols=93  Identities=13%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             chhceeEEEeCCCCEEEEecCC-CC---ChhhH-HHHH-------HHHHHHhhccCCCccceeEe--CCEEEE-EEEeCc
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYV-AH---PDKLK-KKIT-------RELITTILARKPKMCSFLEW--KDVKIV-YKRYAS   70 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~-~~---~~~~~-~~~~-------~~~~~~~~~~~~~~~pi~~~--~~~~~v-y~~~~~   70 (149)
                      |.|-+++|.|+.|..++.+-|. ..   .+++. ..+.       +.+..++...+. ...|..+  +.++.- |-.-.+
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~-k~~f~sy~Ts~YklhfyeTptg   79 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDV-KDGFLSYKTSKYKLHFYETPTG   79 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCc-ccCeeEEeeceeEEEEEEcCCC
Confidence            4678899999999999988664 32   12111 1111       222233322211 1234433  444443 344568


Q ss_pred             EEEEEEecCCCCHHHHHHHHHHHHH-HHHHHh
Q psy14094         71 LYFCCAIEQNDNELLTLEIIHRYVE-LLDKYF  101 (149)
Q Consensus        71 Lyfv~v~~~~~n~l~ile~L~~lv~-~l~~yf  101 (149)
                      |.|+..|+.+...  +-++||.++. +--+|.
T Consensus        80 lk~vl~Tdpk~~~--ir~vLq~IYs~lyVE~V  109 (140)
T KOG3368|consen   80 LKFVLNTDPKAGS--IRDVLQYIYSHLYVEYV  109 (140)
T ss_pred             cEEEEecCCCccc--HHHHHHHHHHHHHHHHH
Confidence            9999999988755  4678888888 444444

>KOG0781|consensus

Probab=81.28  E-value=39  Score=30.04  Aligned_cols=112  Identities=13%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhh-HHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCc--EEEEEEecCCCCH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKL-KKKITRELITTILARKPKMCSFLEWKDVKIVYKRYAS--LYFCCAIEQNDNE   83 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~--Lyfv~v~~~~~n~   83 (149)
                      |+..+.|+++.|-++-...=-+....+ ...+++..+.  ..|.. ..+ +.++.+++=|...++  +.|+++-..--+-
T Consensus         1 Mld~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll--~er~~-~~~-~~~~~yTlk~q~~N~~~lvfvvvfqki~~L   76 (587)
T KOG0781|consen    1 MLDQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLL--SERGG-VNS-FTFEAYTLKYQLDNQYSLVFVVVFQKILTL   76 (587)
T ss_pred             CcceeeeecCCcEEEEEecccchhccchHHHHHHHHHH--HhhcC-ccc-CchhheeEeeeecCCccEEEEEEEeccchh
Confidence            788899999999887655433333232 2233333221  12222 222 677888888888775  6677776666666


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCHHHHHhc-HHHHHHHHHH
Q psy14094         84 LLTLEIIHRYVELLDKYFGSVCELDIIFN-FEKAYFILDE  122 (149)
Q Consensus        84 l~ile~L~~lv~~l~~yf~~v~E~~i~~N-f~~v~~llDE  122 (149)
                      ..+-.+|....+.+..-|...+-..++-| ++...+++++
T Consensus        77 ~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~  116 (587)
T KOG0781|consen   77 TYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKL  116 (587)
T ss_pred             hhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHH
Confidence            66667777777777777776666667666 4456666654

>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT)

Probab=81.04  E-value=5  Score=30.00  Aligned_cols=53  Identities=23%  Similarity=0.215  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeec------CHHHHHHHHHHHh
Q psy14094         93 YVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQET------SKKNVLKAIAAQD  145 (149)
Q Consensus        93 lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~T------d~~~i~~~i~~~~  145 (149)
                      +-+.|+++++.+.+++..+...-.-|.+||-...|...+-      +|+.+++.+....
T Consensus         6 fL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~   64 (181)
T PF08006_consen    6 FLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY   64 (181)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            4456777888899999988888888888888888865544      7888877776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
1w63_Q	158	Ap1 Clathrin Adaptor Core Length = 158		1e-65
2vgl_S	142	Ap2 Clathrin Adaptor Core Length = 142		2e-34

>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core Length = 158

Iteration: 1
 Score =  244 bits (623), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 130/142 (91%)
Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           M+FMLLFSRQGKLRLQKWY+A  DK +KK+ REL+  +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           ++Q+TSKK+VLKAI   DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143

>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++F+L+ +R GK RL KWY+   D  K+K+  E+   +  R  K  +F+E+++ KI+Y+R
Sbjct: 2   IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA LYFC  ++ NDN L  LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62  YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
           EI+ETS+  VLK +
Sbjct: 122 EIRETSQTKVLKQL 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	1e-50
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	4e-49
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	4e-42
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	3e-22
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	2e-13

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score =  157 bits (399), Expect = 1e-50
 Identities = 114/142 (80%), Positives = 130/142 (91%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           M+FMLLFSRQGKLRLQKWY+A  DK +KK+ REL+  +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YASLYFCCAIE  DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           ++Q+TSKK+VLKAI   DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score =  153 bits (388), Expect = 4e-49
 Identities = 64/141 (45%), Positives = 97/141 (68%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++F+L+ +R GK RL KWY+   D  K+K+  E+   +  R  K  +F+E+++ KI+Y+R
Sbjct: 2   IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA LYFC  ++ NDN L  LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62  YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQ 148
           EI+ETS+  VLK +     L+
Sbjct: 122 EIRETSQTKVLKQLLMLQSLE 142

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  136 bits (343), Expect = 4e-42
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 8   MQFMLLFSRQGKLRLQKWYV-AHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYK 66
           ++ +L+    G     K+Y   +P   ++K   + I     R     + LE   + +VYK
Sbjct: 13  VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLE--GLTVVYK 70

Query: 67  RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDELLL 125
               LYF       +NEL+ + +++   + L +    +V +  ++ N E  +  +DE++ 
Sbjct: 71  SSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVD 130

Query: 126 GGEIQETSKKNVLKAIAAQD 145
           GG I E+  + V+  +A + 
Sbjct: 131 GGVILESDPQQVVHRVALRG 150

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 90.1 bits (222), Expect = 3e-22
 Identities = 24/129 (18%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 9   QFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRY 68
             + +++ +G++ + + Y    D  +  +    +  I AR+               + + 
Sbjct: 3   GGLFIYNHKGEVLISRVY--RDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60

Query: 69  ASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGE 128
           ++++     +QN N  +  E +++  +++  YFG + E +I  NF   Y +LDE+L  G 
Sbjct: 61  SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120

Query: 129 IQETSKKNV 137
            Q +    +
Sbjct: 121 PQNSETGAL 129

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 12  LLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASL 71
            +   +GK+ + + Y    D  + +    ++      +  +   L    V+ ++ ++ +L
Sbjct: 7   YVLDLKGKVLICRNYRGDVDMSEVEHFMPILME-KEEEGMLSPILAHGGVRFMWIKHNNL 65

Query: 72  YFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQE 131
           Y     ++N    L    +++ V++  +YF  + E  I  NF   Y +LDEL+  G  Q 
Sbjct: 66  YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125

Query: 132 TSKKNVLK 139
           T  K + +
Sbjct: 126 TDSKILQE 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.96
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	96.7
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	95.94
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	95.94
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.23
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	95.21
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	94.96
3cue_C	159	Transport protein particle 18 kDa subunit; membran	94.86
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	94.71
2j3w_A	142	Sedlin, trafficking protein particle complex prote	94.56
2fh5_A	185	Signal recognition particle receptor alpha subunit	87.05
3cue_A	219	Transport protein particle 23 kDa subunit; membran	86.22

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=4.4e-46  Score=276.38  Aligned_cols=142  Identities=80%  Similarity=1.337  Sum_probs=136.7

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT   86 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i   86 (149)
                      ||+|++|+|++|+++++|||++.+.+++..+++.+++++.++++++||++++++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~   80 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT   80 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            89999999999999999999999998888899999999888776789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094         87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ  148 (149)
Q Consensus        87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~  148 (149)
                      +++||+++++|++|||++||.+|++||++||++||||+|+|+||+||++.|+++|+.++++.
T Consensus        81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~  142 (158)
T 1w63_Q           81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQ  142 (158)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999987764

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=3.8e-45  Score=270.18  Aligned_cols=138  Identities=21%  Similarity=0.388  Sum_probs=127.2

Q ss_pred             ccchhceeEEEeCCCCEEEEecCCCC--ChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCC
Q psy14094          4 YLLNMQFMLLFSRQGKLRLQKWYVAH--PDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQND   81 (149)
Q Consensus         4 ~~~mi~~i~iln~~G~~ll~k~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~   81 (149)
                      .++||+|++|+|++|+++++|||+++  +.+++.++++++++++. +++  +|++.+++++++||++++|||++++++++
T Consensus         9 sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~e   85 (153)
T 3tjz_C            9 SLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYE   85 (153)
T ss_dssp             CSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SCC--CCEEEETTEEEEEEECSSCEEEEEEETTS
T ss_pred             cHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--CCEEEECCEEEEEEEECCEEEEEEEcCCC
Confidence            47899999999999999999999984  55678889999999974 433  79999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHh-cccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094         82 NELLTLEIIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ  144 (149)
Q Consensus        82 n~l~ile~L~~lv~~l~~yf-~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~  144 (149)
                      ||++++++||+++++|++|| |++||++|++||++||++||||+|+|+||+||++.|++||+..
T Consensus        86 Nel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~  149 (153)
T 3tjz_C           86 NELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR  149 (153)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC---
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcc
Confidence            99999999999999999999 8999999999999999999999999999999999999999764

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=1.5e-44  Score=263.64  Aligned_cols=142  Identities=45%  Similarity=0.864  Sum_probs=134.9

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT   86 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i   86 (149)
                      ||+|++|+|++|+++++|||++.+...++++++.+++.+.++++++||++++++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            89999999999999999999988887788899999999887766789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094         87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ  148 (149)
Q Consensus        87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~  148 (149)
                      +++||+++++|++|||++||.+|++||++||++||||+|+|+||+|++..+.+++..+++++
T Consensus        81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~  142 (142)
T 2vgl_S           81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE  142 (142)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999999999999999999888899998888764

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=100.00  E-value=1.6e-35  Score=249.40  Aligned_cols=134  Identities=16%  Similarity=0.301  Sum_probs=120.5

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhc-cCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILA-RKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL   85 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~   85 (149)
                      ||+++||+|++|+++++|||++...+..   ...+++.+.+ ++..++|++++++++++|+++++|||+++++.++|||+
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~   77 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNA---VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM   77 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHH---HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhH---HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence            8999999999999999999998766433   2344455544 33357999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHH
Q psy14094         86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAA  143 (149)
Q Consensus        86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~  143 (149)
                      +++|||+++++|++|||++||++|++||++||++||||+|+|+||+||++.|++++..
T Consensus        78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~  135 (435)
T 2vgl_M           78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ  135 (435)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999888754

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=4.4e-36  Score=251.98  Aligned_cols=136  Identities=20%  Similarity=0.324  Sum_probs=120.3

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhcc-C-CCccceeEeCCEEEEEEEeCcEEEEEEecCCCCH
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILAR-K-PKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNE   83 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~   83 (149)
                      |||+|++|+|++|+++++|||++...+..   .+.+++.+.++ + ..+||++++++++++|+++++|||+++++.++||
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSE---VEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTT---HHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHH---HHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            69999999999999999999998755432   23344444333 2 3579999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094         84 LLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ  144 (149)
Q Consensus        84 l~ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~  144 (149)
                      |++++|||+++++|++|||++||++|++||++||++||||+|+|+||+||++.|+++|+..
T Consensus        78 l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~  138 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE  138 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999887643

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.96  E-value=0.025  Score=42.06  Aligned_cols=97  Identities=12%  Similarity=0.153  Sum_probs=64.6

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCCh-----hhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCC
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPD-----KLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQN   80 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~   80 (149)
                      +||...+|.-....++|+.++.....     .+.....+.+.+++....+... .++.+++.|-|...+++.++++++.+
T Consensus         1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            36666666554324555666653211     2233344555555543122222 35679999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcc
Q psy14094         81 DNELLTLEIIHRYVELLDKYFGS  103 (149)
Q Consensus        81 ~n~l~ile~L~~lv~~l~~yf~~  103 (149)
                      .+.-..+.||..+.+-+..-++.
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999888776653

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=96.70  E-value=0.016  Score=43.04  Aligned_cols=84  Identities=12%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094         16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE   95 (149)
Q Consensus        16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~   95 (149)
                      .+|.++|+.|=...  ..-..+.+.+..++.+.+++  -.+++|++.|-|...+++.++++++.+.+.-..+.||..+.+
T Consensus        10 Arg~~iLae~t~~~--gnf~~ia~~iL~kip~~~~k--~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~   85 (189)
T 4b93_A           10 ARGTTILAKHAWCG--GNFLEVTEQILAKIPSENNK--LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK   85 (189)
T ss_dssp             EETTEEEEEEESSE--ECHHHHHHHHHTTCCSSSEE--EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             EeCCEEEEeCCCCC--CCHHHHHHHHHHhCCCCCCe--EEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence            36999999873322  11222334444443322111  245789999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy14094         96 LLDKYFGS  103 (149)
Q Consensus        96 ~l~~yf~~  103 (149)
                      -+..-++.
T Consensus        86 eF~~~~~~   93 (189)
T 4b93_A           86 RFQTTYGS   93 (189)
T ss_dssp             HHHHHHGG
T ss_pred             HHHhhccc
Confidence            88877764

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=95.94  E-value=0.12  Score=37.83  Aligned_cols=84  Identities=12%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094         16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE   95 (149)
Q Consensus        16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~   95 (149)
                      .+|.++|+.+=....  .-....+.+.+++..++.+  -.++.+++.|-|...+++.++++++.+..--..+.||..+.+
T Consensus        52 aRG~~VLae~t~~~g--nf~~iak~ll~kl~~~~~r--~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~  127 (169)
T 2vx8_A           52 ARGTTILAKHAWCGG--NFLEVTEQILAKIPSENNK--LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK  127 (169)
T ss_dssp             EETTEEEEEEESSCB--SHHHHHHHHHTTSCSSCEE--EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             EcCCEEEEEeccCCC--CHHHHHHHHHhhCCCCCCc--eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence            457788888643221  2223445555555432221  246789999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy14094         96 LLDKYFGS  103 (149)
Q Consensus        96 ~l~~yf~~  103 (149)
                      -+..-++.
T Consensus       128 eF~~~y~~  135 (169)
T 2vx8_A          128 RFQTTYGS  135 (169)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            99887765

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=95.94  E-value=0.072  Score=39.20  Aligned_cols=84  Identities=11%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094         16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE   95 (149)
Q Consensus        16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~   95 (149)
                      .+|.++|+.|=.....-  ..+.+.+..++... +.. -.++.+++.|-|...+++.++++++.+..--..+.||..+-+
T Consensus        62 Arg~tiLAE~t~~~gnf--~~va~~iL~kip~~-~~r-~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~  137 (173)
T 4afi_A           62 ARGTTILAKHAWCGGNF--LEVTEQILAKIPSE-NNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK  137 (173)
T ss_dssp             EETTEEEEEEESSCCCH--HHHHHHHHTTSCSS-SEE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ECCCEEEEEccCCCCCH--HHHHHHHHHhCCCC-CCe-EEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence            45889999875433221  12333443333221 111 245789999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy14094         96 LLDKYFGS  103 (149)
Q Consensus        96 ~l~~yf~~  103 (149)
                      -+..-+|.
T Consensus       138 eF~~~yg~  145 (173)
T 4afi_A          138 RFQTTYGS  145 (173)
T ss_dssp             HHHHHHGG
T ss_pred             HHHHHhch
Confidence            98887774

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.23  E-value=0.51  Score=33.33  Aligned_cols=97  Identities=8%  Similarity=-0.002  Sum_probs=65.0

Q ss_pred             hhceeEEEeCCC--CEEEEecCCCC-----ChhhHHHHHHHHHHHhhccCCC-ccceeEeCCEEEEEE-EeCcEEEEEEe
Q psy14094          7 NMQFMLLFSRQG--KLRLQKWYVAH-----PDKLKKKITRELITTILARKPK-MCSFLEWKDVKIVYK-RYASLYFCCAI   77 (149)
Q Consensus         7 mi~~i~iln~~G--~~ll~k~y~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~~~~~~vy~-~~~~Lyfv~v~   77 (149)
                      -|-++.|+-..+  -++|+..++-.     .....+++...+.+.+..|.+. .---++.+++.+-|. +.+++.+++++
T Consensus         6 kl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~   85 (144)
T 3bw6_A            6 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLIT   85 (144)
T ss_dssp             CEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEE
Confidence            344565654432  46777766532     1223355556666666554432 112356789988887 78999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14094         78 EQNDNELLTLEIIHRYVELLDKYFGS  103 (149)
Q Consensus        78 ~~~~n~l~ile~L~~lv~~l~~yf~~  103 (149)
                      +.+-..-..+.||+.+.+-+..-++.
T Consensus        86 D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           86 DKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHccc
Confidence            99999999999999888877766653

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=95.21  E-value=0.17  Score=36.03  Aligned_cols=94  Identities=11%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCC----h-hhHHHHHHHHHHHhh------ccCCCcc--ceeEeCCEE-EEEEEeCcE
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHP----D-KLKKKITRELITTIL------ARKPKMC--SFLEWKDVK-IVYKRYASL   71 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~----~-~~~~~~~~~~~~~~~------~~~~~~~--pi~~~~~~~-~vy~~~~~L   71 (149)
                      |++.+++|+|++|.++..|-|.+..    . .+...+...++..+.      +......  -.+..++++ ..|..-.++
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            5788999999999999999996431    1 222222333332221      1111111  233456664 678888899


Q ss_pred             EEEEEecCCCCHHHHHHHHHHHH-HHHHHHh
Q psy14094         72 YFCCAIEQNDNELLTLEIIHRYV-ELLDKYF  101 (149)
Q Consensus        72 yfv~v~~~~~n~l~ile~L~~lv-~~l~~yf  101 (149)
                      -|+++++.+++.  +=++|+++. ++.-+|.
T Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v  109 (145)
T 2j3t_C           81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFV  109 (145)
T ss_dssp             EEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred             EEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence            999999988765  557888888 6777754

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=94.96  E-value=0.63  Score=34.77  Aligned_cols=97  Identities=11%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             chhceeEEEeCCCC--EEEEecCCCC-----ChhhHHHHHHHHHHHhhccCCC-ccceeEeCCEEEE-EEEeCcEEEEEE
Q psy14094          6 LNMQFMLLFSRQGK--LRLQKWYVAH-----PDKLKKKITRELITTILARKPK-MCSFLEWKDVKIV-YKRYASLYFCCA   76 (149)
Q Consensus         6 ~mi~~i~iln~~G~--~ll~k~y~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~~~~~~v-y~~~~~Lyfv~v   76 (149)
                      |-+-++.|+-..|+  .+|+..|+-.     ......++.....+.+..+.+. .--.++.+++.+- |...+++.++++
T Consensus         2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i   81 (199)
T 3kyq_A            2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI   81 (199)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred             ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence            45667777776554  3456666521     2334444444444455555432 1123567888887 999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHhc
Q psy14094         77 IEQNDNELLTLEIIHRYVELLDKYFG  102 (149)
Q Consensus        77 ~~~~~n~l~ile~L~~lv~~l~~yf~  102 (149)
                      ++.+.+.-..+.||..+.+-+..-++
T Consensus        82 td~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           82 ADSEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999888887776

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.089  Score=38.12  Aligned_cols=94  Identities=10%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             chhceeEEEeCCCCEEEEecCCCC-------C----hhhHHHHHHHHHHHh---hcc---CCCcccee--EeCCEE-EEE
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAH-------P----DKLKKKITRELITTI---LAR---KPKMCSFL--EWKDVK-IVY   65 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~-------~----~~~~~~~~~~~~~~~---~~~---~~~~~pi~--~~~~~~-~vy   65 (149)
                      |+|.+++|+|+.|.++..|-|.+.       .    ..+...+....+..+   ..+   ......+.  ..+.++ ..|
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            678999999999999999988531       1    111111222222221   111   11112232  234444 567


Q ss_pred             EEeCcEEEEEEecCCCCHHHHHHHHHHHHH-HHHHHh
Q psy14094         66 KRYASLYFCCAIEQNDNELLTLEIIHRYVE-LLDKYF  101 (149)
Q Consensus        66 ~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~-~l~~yf  101 (149)
                      ..-.++-|+++++..++.+  =++|+++.+ +.-+|.
T Consensus        81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv  115 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV  115 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence            7778999999999887654  467788886 766654

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=94.71  E-value=0.77  Score=32.74  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCCh-hhHHHHHHHHHHHhhc----cCCCccc-eeEeCCEEEEEEEeCcEEEEEEecC
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPD-KLKKKITRELITTILA----RKPKMCS-FLEWKDVKIVYKRYASLYFCCAIEQ   79 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~-~~~~~~~~~~~~~~~~----~~~~~~p-i~~~~~~~~vy~~~~~Lyfv~v~~~   79 (149)
                      .-+.+++|-|++|-|++.-...+... .-+..+...+-..+..    .-.+..+ +-.++++.+|+.....+++..++++
T Consensus        36 ~Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~  115 (143)
T 3cpt_A           36 EGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASS  115 (143)
T ss_dssp             TTEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEET
T ss_pred             CCeEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecC
Confidence            35689999999999999988776433 2222344443222211    0122223 4467899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy14094         80 NDNELLTLEIIHRYVELLDK   99 (149)
Q Consensus        80 ~~n~l~ile~L~~lv~~l~~   99 (149)
                      +.|--+++++=+.+..+++.
T Consensus       116 ~aNtG~Il~Le~~L~p~l~~  135 (143)
T 3cpt_A          116 SANTGLIVSLEKELAPLFEE  135 (143)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHhhhHHHHHHHHHH
Confidence            99999999876666555554

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=94.56  E-value=0.44  Score=33.57  Aligned_cols=97  Identities=5%  Similarity=0.023  Sum_probs=59.3

Q ss_pred             ch-hceeEEEeCCCCEEEEecCCCCCh---hhHHHHHH-HHHHHh----hcc--CCCcc---ceeEeCCEE-EEEEEeCc
Q psy14094          6 LN-MQFMLLFSRQGKLRLQKWYVAHPD---KLKKKITR-ELITTI----LAR--KPKMC---SFLEWKDVK-IVYKRYAS   70 (149)
Q Consensus         6 ~m-i~~i~iln~~G~~ll~k~y~~~~~---~~~~~~~~-~~~~~~----~~~--~~~~~---pi~~~~~~~-~vy~~~~~   70 (149)
                      |+ +.++.|+|++|.++..+-|.+...   .+..++.. .+....    ...  +....   .+-..++++ +.|..-.+
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            44 789999999999999999975421   11222222 111111    111  11111   112234443 67888889


Q ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14094         71 LYFCCAIEQNDNELLTLEIIHRYVELLDKYFGS  103 (149)
Q Consensus        71 Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~~  103 (149)
                      +-|+++++.. ++-.+-++++++.++.-+|.-|
T Consensus        83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N  114 (142)
T 2j3w_A           83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN  114 (142)
T ss_dssp             CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence            9999999863 4666778888888877777654

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=87.05  E-value=7.5  Score=28.71  Aligned_cols=92  Identities=16%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhh--ccCCCccceeEeCCEEEEEEEeCc--EEEEEEecCCC
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTIL--ARKPKMCSFLEWKDVKIVYKRYAS--LYFCCAIEQND   81 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~pi~~~~~~~~vy~~~~~--Lyfv~v~~~~~   81 (149)
                      .|+..+.|+++.|=+|-+  |.+.... .......+.+.+.  .|..  .+.+.++++++=|...++  |.|+++-..--
T Consensus         9 ~~~D~~~IfTkGGvVLWs--~~~~~~~-~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL   83 (185)
T 2fh5_A            9 SMVDFFTIFSKGGLVLWC--FQGVSDS-CTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKIL   83 (185)
T ss_dssp             CSCSEEEEEETTSBEEEE--EBTTTBS-CCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred             cceeEEEEEeCCeEEEEe--ecCCccc-ccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccc
Confidence            588999999999988877  3332111 0113444444443  2332  345778999998888875  89999988766


Q ss_pred             CHHHHHHHHHHHHHHHHHHhc
Q psy14094         82 NELLTLEIIHRYVELLDKYFG  102 (149)
Q Consensus        82 n~l~ile~L~~lv~~l~~yf~  102 (149)
                      +-..+-++|..+...+.+-|+
T Consensus        84 ~L~YiD~LL~~v~~~Fv~~Y~  104 (185)
T 2fh5_A           84 TLTYVDKLIDDVHRLFRDKYR  104 (185)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTH
T ss_pred             cchHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666664

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=86.22  E-value=9.3  Score=28.97  Aligned_cols=23  Identities=17%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             chhceeEEEeCCCCEEEEecCCC
Q psy14094          6 LNMQFMLLFSRQGKLRLQKWYVA   28 (149)
Q Consensus         6 ~mi~~i~iln~~G~~ll~k~y~~   28 (149)
                      |+|..++|+|+.|..+..|.|..
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~   23 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTN   23 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSS
T ss_pred             CeeEEEEEEeCCCCEEeehhhcc
Confidence            67899999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	1e-46
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	9e-31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	96.14
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	95.06
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	93.47
d2fh5a1	129	Signal recognition particle receptor alpha subunit	92.19

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.087  Score=34.76  Aligned_cols=93  Identities=10%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             hhceeEEEeCCCCEEEEecCCCCCh-hhHHHHHHHHHHHhh-----ccCCCccceeEeCCEEEEEEEeCcEEEEEEecCC
Q psy14094          7 NMQFMLLFSRQGKLRLQKWYVAHPD-KLKKKITRELITTIL-----ARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQN   80 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k~y~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~   80 (149)
                      -+.+++|-|++|=++++=.-.+... ..+..+...+-....     .-.....=+..++++.+++-....+++.++++++
T Consensus        16 Gl~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lstf~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~ia~~~   95 (116)
T d3cpta1          16 GLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS   95 (116)
T ss_dssp             TEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred             CeEEEEEEcCCCcEEEEecCCCChhhhcchHHHHHHHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEEEecCC
Confidence            4789999999999998776554433 222234433322211     1111223456789999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy14094         81 DNELLTLEIIHRYVELLDK   99 (149)
Q Consensus        81 ~n~l~ile~L~~lv~~l~~   99 (149)
                      .|.-+++.+-+.+..+|+.
T Consensus        96 aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          96 ANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhh
Confidence            9999999998888877764

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.14  Score=34.06  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=43.2

Q ss_pred             eEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14094         56 LEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGS  103 (149)
Q Consensus        56 ~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~~  103 (149)
                      +..+++.|-|...+++.++++++.+.+.-+.+.||..+-+-+..-+++
T Consensus        54 ~~~~~y~fHy~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y~~  101 (127)
T d1ifqa_          54 LEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK  101 (127)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhhhh
Confidence            467999999999999999999999999999999999888888777764

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.47  E-value=0.58  Score=31.23  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=61.1

Q ss_pred             hceeEEEeCCC--CEEEEecCCCC-----ChhhHHHHHHHHHHHhhccCCC-ccceeEeCCEEEE-EEEeCcEEEEEEec
Q psy14094          8 MQFMLLFSRQG--KLRLQKWYVAH-----PDKLKKKITRELITTILARKPK-MCSFLEWKDVKIV-YKRYASLYFCCAIE   78 (149)
Q Consensus         8 i~~i~iln~~G--~~ll~k~y~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~~~~~~v-y~~~~~Lyfv~v~~   78 (149)
                      +-++.|+...+  -+.|+..++=.     .....+++...+.+.+..|.+. .--.++.+++.+- |++.+||.++++++
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~sv~~~~y~~h~yv~~~gl~~l~i~d   82 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLITD   82 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEEEEEETTEEEEEECCSSSCEEEEEBC
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceEEEEcCCeEEEEEEeeCCEEEEEEEC
Confidence            44566666433  34566666521     1334455566666666666543 1123567777654 88889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHh
Q psy14094         79 QNDNELLTLEIIHRYVELLDKYF  101 (149)
Q Consensus        79 ~~~n~l~ile~L~~lv~~l~~yf  101 (149)
                      .+-+.-..+.+|+.+.+-+..-+
T Consensus        83 ~~Yp~r~AF~~L~~i~~eF~~~~  105 (140)
T d1ioua_          83 KQYPVRPAYTLLNKILDEYLVAH  105 (140)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcchHHHHHHHHHHHHHHHHHc
Confidence            99999999999996665554433

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.98  Score=29.86  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             hhceeEEEeCCCCEEEEe-cCCCCChhhHHHHHHHHHHHhh--ccCCCccceeEeCCEEEEEEEeCc--EEEEEEecCCC
Q psy14094          7 NMQFMLLFSRQGKLRLQK-WYVAHPDKLKKKITRELITTIL--ARKPKMCSFLEWKDVKIVYKRYAS--LYFCCAIEQND   81 (149)
Q Consensus         7 mi~~i~iln~~G~~ll~k-~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~pi~~~~~~~~vy~~~~~--Lyfv~v~~~~~   81 (149)
                      ||..+.|+++.|=++-+. .+.+....-    ...+.+.+.  .|..  .+-+.++++++=|+..++  |.|+++-..--
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~~~~~----IN~LI~~vlLEER~~--~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il   74 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDSCTGP----VNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKIL   74 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSCCCH----HHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred             CccEEEEEeCCeEEEEeecCCCcccchh----HHHHHHHhheecccC--CCceeECCEEEEEEEeccCCEEEEEEEhhhh
Confidence            889999999999888873 333322222    334444432  3332  234678999999999885  88999988766


Q ss_pred             CHHHHHHHHHHHHHHHHHHhc
Q psy14094         82 NELLTLEIIHRYVELLDKYFG  102 (149)
Q Consensus        82 n~l~ile~L~~lv~~l~~yf~  102 (149)
                      +-..+-.+|..+...+.+-++
T Consensus        75 ~l~yvd~lL~~i~~~F~~~y~   95 (129)
T d2fh5a1          75 TLTYVDKLIDDVHRLFRDKYR   95 (129)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTH
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            666666777766666666665