Psyllid ID: psy1409

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPSYPFYK
cccHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIeeesettesNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEeesekvpeeflngtidvdkfletftpKRILMHLRRIKADKMAEMLTkrnsfgspthngvgghnggsssfggmyppvpvppmgpgypvsgggmplphiqmtpypqlpqmptpsypfyk
MENLESLLEHLDISELKELVNDEETFNNFTKEATatlttesneqKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIkshknnvstdtVLALLQTAASEIeeesettesneqKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIkshknnvstdtVLALLQTAASEieeesekvpeeflngtidvdkfletftpkriLMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPSYPFYK
MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQtaaseieeesettesneQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASeieeesekvpeeFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPThngvgghnggsssfggmyppvpvppmgpgypvsgggmpLPHIQMTPYPQLPQMPTPSYPFYK
*********************************************************************************************************VLAL********************************************************************************TVLALLQ***************EFLNGTIDVDKFLETFTPKRILMHLRRIKA*******************************************************************************
******L*E**DISELKE*VND*ETFNNFTK***************MLIAS*********************************************************LLQTAASEIEEESET*E*NEQKEMLIASNKSLAEYNLSQE*A*LE**SQLLDLNEQLTQLSK******************************************FLNGTIDVDKFLETFTPKRILMHLRRI*********************************************************************************
MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAA***************KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAAS*********PEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPSYPFYK
MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTKR***********************MYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQL*****PS***Y*
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MENLESLLEHLDISELKELVNDEETFNNFTKEATATLTTESNEQKEMLIASNKSLAEYNLSQEEAxxxxxxxxxxxxxxxxxxxxxVESKVELIKSHKNNVSTDTVxxxxxxxxxxxxxxxxxxxxxEQKEMLIASNKSLAEYNLSQEEAxxxxxxxxxxxxxxxxxxxxxVESKVELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTPYPQLPQMPTPSYPFYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q8R0J7285 Vacuolar protein sorting- yes N/A 0.406 0.456 0.386 2e-18
Q9H9H4285 Vacuolar protein sorting- yes N/A 0.406 0.456 0.371 3e-16
A5D8V6 355 Vacuolar protein sorting- no N/A 0.406 0.366 0.348 2e-15
Q8R105 352 Vacuolar protein sorting- no N/A 0.381 0.346 0.323 3e-15
Q5R9T2 355 Vacuolar protein sorting- no N/A 0.406 0.366 0.340 1e-14
Q8NEZ2397 Vacuolar protein sorting- no N/A 0.4 0.322 0.351 2e-14
Q8CHS8397 Vacuolar protein sorting- no N/A 0.4 0.322 0.343 2e-13
Q86XT2251 Vacuolar protein sorting- no N/A 0.556 0.709 0.275 4e-06
Q810I0261 Vacuolar protein sorting- no N/A 0.384 0.471 0.292 0.0002
>sp|Q8R0J7|VP37B_MOUSE Vacuolar protein sorting-associated protein 37B OS=Mus musculus GN=Vps37b PE=2 SV=1 Back     alignment and function desciption
 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 2/132 (1%)

Query: 119 EESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVEL 178
           EE++T + N  KEM +ASN+SLAE NL  +  L  +K++L    ++L  L ++ + K   
Sbjct: 36  EEAQTVQLN--KEMTLASNRSLAEGNLLYQPQLDAQKARLTQKYQELQVLFEAYQIKKTK 93

Query: 179 IKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRR 238
           +    NN S +T+LALLQ   ++IEE++E + E+FL+G + +D F++ +  KR L H+RR
Sbjct: 94  LDKQSNNASLETLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMRR 153

Query: 239 IKADKMAEMLTK 250
           +K +K+ E++ K
Sbjct: 154 VKVEKLQELVLK 165
Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation.
Mus musculus (taxid: 10090)
>sp|Q9H9H4|VP37B_HUMAN Vacuolar protein sorting-associated protein 37B OS=Homo sapiens GN=VPS37B PE=1 SV=1 Back     alignment and function description
>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein 37C OS=Homo sapiens GN=VPS37C PE=1 SV=2 Back     alignment and function description
>sp|Q8R105|VP37C_MOUSE Vacuolar protein sorting-associated protein 37C OS=Mus musculus GN=Vps37c PE=2 SV=1 Back     alignment and function description
>sp|Q5R9T2|VP37C_PONAB Vacuolar protein sorting-associated protein 37C OS=Pongo abelii GN=VPS37C PE=2 SV=1 Back     alignment and function description
>sp|Q8NEZ2|VP37A_HUMAN Vacuolar protein sorting-associated protein 37A OS=Homo sapiens GN=VPS37A PE=1 SV=1 Back     alignment and function description
>sp|Q8CHS8|VP37A_MOUSE Vacuolar protein sorting-associated protein 37A OS=Mus musculus GN=Vps37a PE=2 SV=1 Back     alignment and function description
>sp|Q86XT2|VP37D_HUMAN Vacuolar protein sorting-associated protein 37D OS=Homo sapiens GN=VPS37D PE=1 SV=2 Back     alignment and function description
>sp|Q810I0|VP37D_MOUSE Vacuolar protein sorting-associated protein 37D OS=Mus musculus GN=Vps37d PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
328723217215 PREDICTED: vacuolar protein sorting-asso 0.55 0.818 0.435 2e-32
91085199225 PREDICTED: similar to vacuolar protein s 0.528 0.751 0.393 1e-25
357623776215 vacuolar protein sorting 37B [Danaus ple 0.481 0.716 0.415 1e-24
114051139216 vacuolar protein sorting-associated prot 0.546 0.810 0.397 8e-23
383860237218 PREDICTED: vacuolar protein sorting-asso 0.515 0.756 0.455 2e-22
241111850223 vacuolar protein-sorting protein, putati 0.375 0.538 0.467 5e-22
350400151217 PREDICTED: vacuolar protein sorting-asso 0.509 0.751 0.435 3e-21
340718170217 PREDICTED: vacuolar protein sorting-asso 0.509 0.751 0.429 4e-21
170030831231 vacuolar protein sorting 37B [Culex quin 0.581 0.805 0.369 7e-21
125776824226 GA10797 [Drosophila pseudoobscura pseudo 0.493 0.699 0.374 2e-20
>gi|328723217|ref|XP_001949847.2| PREDICTED: vacuolar protein sorting-associated protein 37B-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 19/195 (9%)

Query: 125 ESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKN 184
           E + QKEMLIASN+SLAE+NL++E  L+  K +L ++ E+  +L KSV  KV  +K HK 
Sbjct: 34  EIDTQKEMLIASNQSLAEFNLTKEPELVSGKERLCEMYEEAEKLYKSVTEKVNTLKQHKG 93

Query: 185 NVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKM 244
           +++++T+LALLQTA+ E EEES+K+ E+FL+G  D++ FLE F  +R  MH+R+ KADKM
Sbjct: 94  SMTSETILALLQTASCETEEESDKLAEKFLSGNTDLEGFLEEFLKRRKDMHMRKAKADKM 153

Query: 245 AEMLTKRNSFGSPTHNGVGGHNGGSSSFGGMYPPVPVPPMGPGYPVSGGGMPLPHIQMTP 304
           +E+L++RN+   P  N +     G       YP        PGYP S    P       P
Sbjct: 154 SELLSRRNNSFRPPINNIQQSTAG-------YP-------QPGYPNSFYFQPTS----MP 195

Query: 305 YPQLP-QMPTPSYPF 318
           YP +P  MP P   F
Sbjct: 196 YPNVPINMPMPGNQF 210

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91085199|ref|XP_971915.1| PREDICTED: similar to vacuolar protein sorting 37B [Tribolium castaneum] gi|270008460|gb|EFA04908.1| hypothetical protein TcasGA2_TC014972 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357623776|gb|EHJ74800.1| vacuolar protein sorting 37B [Danaus plexippus] Back     alignment and taxonomy information
>gi|114051139|ref|NP_001040394.1| vacuolar protein sorting-associated protein 37A [Bombyx mori] gi|95102730|gb|ABF51306.1| vacuolar protein sorting 37B [Bombyx mori] gi|411100668|gb|AFW03819.1| Vps37A [Bombyx mori] Back     alignment and taxonomy information
>gi|383860237|ref|XP_003705597.1| PREDICTED: vacuolar protein sorting-associated protein 37B-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|241111850|ref|XP_002399406.1| vacuolar protein-sorting protein, putative [Ixodes scapularis] gi|215492968|gb|EEC02609.1| vacuolar protein-sorting protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|350400151|ref|XP_003485753.1| PREDICTED: vacuolar protein sorting-associated protein 37B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340718170|ref|XP_003397544.1| PREDICTED: vacuolar protein sorting-associated protein 37B-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|170030831|ref|XP_001843291.1| vacuolar protein sorting 37B [Culex quinquefasciatus] gi|167868410|gb|EDS31793.1| vacuolar protein sorting 37B [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|125776824|ref|XP_001359406.1| GA10797 [Drosophila pseudoobscura pseudoobscura] gi|54639150|gb|EAL28552.1| GA10797 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
MGI|MGI:1916724285 Vps37b "vacuolar protein sorti 0.378 0.424 0.347 2.1e-18
ZFIN|ZDB-GENE-050913-110231 zgc:114173 "zgc:114173" [Danio 0.365 0.506 0.396 5.5e-18
RGD|1304576285 Vps37b "vacuolar protein sorti 0.378 0.424 0.338 8.9e-18
FB|FBgn0037299214 CG1115 [Drosophila melanogaste 0.403 0.602 0.372 2e-17
WB|WBGene00016990234 vps-37 [Caenorhabditis elegans 0.390 0.534 0.362 8.6e-17
UNIPROTKB|O44158234 vps-37 "Protein VPS-37" [Caeno 0.390 0.534 0.362 8.6e-17
UNIPROTKB|Q9H9H4285 VPS37B "Vacuolar protein sorti 0.378 0.424 0.338 2e-16
UNIPROTKB|E2R807930 ABCB9 "Uncharacterized protein 0.378 0.130 0.322 5.5e-14
UNIPROTKB|A5D8V6 355 VPS37C "Vacuolar protein sorti 0.381 0.343 0.303 2.8e-13
UNIPROTKB|H0YBN0170 VPS37A "Vacuolar protein sorti 0.4 0.752 0.304 1.5e-12
MGI|MGI:1916724 Vps37b "vacuolar protein sorting 37B (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 42/121 (34%), Positives = 69/121 (57%)

Query:   130 KEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNVSTD 189
             KEM +ASN+SLAE NL  +  L  +K++L    ++L  L ++ + K   +    NN S +
Sbjct:    45 KEMTLASNRSLAEGNLLYQPQLDAQKARLTQKYQELQVLFEAYQIKKTKLDKQSNNASLE 104

Query:   190 TVLALLQTAASXXXXXXXXXXXXFLNGTIDVDKFLETFTPKRILMHLRRIKADKMAEMLT 249
             T+LALLQ   +            FL+G + +D F++ +  KR L H+RR+K +K+ E++ 
Sbjct:   105 TLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMRRVKVEKLQELVL 164

Query:   250 K 250
             K
Sbjct:   165 K 165
GO:0003674 "molecular_function" evidence=ND
GO:0005768 "endosome" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030496 "midbody" evidence=ISO
ZFIN|ZDB-GENE-050913-110 zgc:114173 "zgc:114173" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1304576 Vps37b "vacuolar protein sorting 37 homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0037299 CG1115 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00016990 vps-37 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O44158 vps-37 "Protein VPS-37" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9H4 VPS37B "Vacuolar protein sorting-associated protein 37B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R807 ABCB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5D8V6 VPS37C "Vacuolar protein sorting-associated protein 37C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YBN0 VPS37A "Vacuolar protein sorting-associated protein 37A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
pfam07200150 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) 4e-26
pfam07200150 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) 2e-14
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
pfam10349111 pfam10349, WWbp, WW-domain ligand protein 0.003
>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein Back     alignment and domain information 
 Score =  100 bits (252), Expect = 4e-26
 Identities = 56/118 (47%), Positives = 79/118 (66%)

Query: 127 NEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESKVELIKSHKNNV 186
           N +K+ L+A N+SLAE NL +E  L E K+QL D  E+L +L +  E K + +    ++ 
Sbjct: 33  NLEKDALLAQNESLAEENLEKEPQLEELKAQLRDKYEELKKLEEKYEEKKQQLDELSSSY 92

Query: 187 STDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKM 244
           S D +LALLQ AAS+ EEESE++ E+FL G ID+D FL+ +  KR L HLRR K +K+
Sbjct: 93  SPDALLALLQVAASKAEEESEELAEKFLEGEIDLDTFLQKYKDKRTLYHLRRAKEEKL 150

This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic, and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homologue of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors. Length = 150
>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
PF07200150 Mod_r: Modifier of rudimentary (Mod(r)) protein; I 99.98
PF07200150 Mod_r: Modifier of rudimentary (Mod(r)) protein; I 99.94
KOG3270|consensus244 99.43
KOG3270|consensus244 98.61
KOG1924|consensus 1102 97.7
KOG1924|consensus 1102 96.67
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.33
KOG0774|consensus334 96.09
KOG2129|consensus 552 95.66
COG3883265 Uncharacterized protein conserved in bacteria [Fun 94.61
PF11802268 CENP-K: Centromere-associated protein K; InterPro: 93.99
KOG2391|consensus365 93.84
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 93.83
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.19
COG5185622 HEC1 Protein involved in chromosome segregation, i 92.33
PRK11637428 AmiB activator; Provisional 92.25
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 91.69
KOG1923|consensus 830 91.17
KOG2129|consensus 552 90.91
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 90.81
KOG4403|consensus575 90.79
KOG0996|consensus 1293 90.64
PRK11637428 AmiB activator; Provisional 90.55
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 90.1
KOG0995|consensus581 89.87
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 89.67
PRK10929 1109 putative mechanosensitive channel protein; Provisi 89.44
PF04108412 APG17: Autophagy protein Apg17 ; InterPro: IPR0072 89.35
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 89.07
KOG2675|consensus 480 88.44
KOG2391|consensus 365 88.33
PF15254 861 CCDC14: Coiled-coil domain-containing protein 14 88.28
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 88.2
KOG1029|consensus 1118 88.09
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 87.9
KOG4451|consensus286 87.71
KOG0250|consensus 1074 87.68
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 87.46
PRK04778569 septation ring formation regulator EzrA; Provision 87.44
KOG2236|consensus483 87.44
KOG0980|consensus 980 86.79
PF13949296 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI 86.77
KOG3753|consensus 1114 86.7
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 86.47
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 86.34
PF14662193 CCDC155: Coiled-coil region of CCDC155 86.01
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 85.94
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 85.67
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 85.25
KOG0995|consensus 581 84.96
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 84.64
PHA02562562 46 endonuclease subunit; Provisional 83.98
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 83.58
PF15066527 CAGE1: Cancer-associated gene protein 1 family 83.11
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 82.52
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 82.43
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 82.21
cd09235339 V_Alix Middle V-domain of mammalian Alix and relat 82.18
COG4026290 Uncharacterized protein containing TOPRIM domain, 81.83
PF14662193 CCDC155: Coiled-coil region of CCDC155 81.82
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 81.73
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 81.72
KOG0972|consensus384 81.16
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 80.7
KOG0980|consensus 980 80.43
PF00038312 Filament: Intermediate filament protein; InterPro: 80.23
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins Back     alignment and domain information 
Probab=99.98  E-value=4.1e-32  Score=234.14  Aligned_cols=146  Identities=43%  Similarity=0.585  Sum_probs=129.6

Q ss_pred             hcCCHHHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409          99 NNVSTDTVLALLQTAA---SEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSVESK  175 (320)
Q Consensus        99 ~~~Sp~~Ll~lLq~a~---~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~~~k  175 (320)
                      ..+|.+.|..+|++..   .++...++++.+...+++++++|++||+.||+++|+|+++|+++..+|.+++.|+.+|+.|
T Consensus         2 ~~lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k   81 (150)
T PF07200_consen    2 QDLSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK   81 (150)
T ss_dssp             GS-TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999996   7788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCHHHHHHHhhHHHHHHHHhHHHHHHH
Q psy1409         176 VELIKSHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNGTIDVDKFLETFTPKRILMHLRRIKADKM  244 (320)
Q Consensus       176 ~~kl~~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l  244 (320)
                      +++++.++.+|||++|+++|++++.++|++||.||++|++|++||++||++|+++|++||.|++|.|||
T Consensus        82 ~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL  150 (150)
T PF07200_consen   82 EQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL  150 (150)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins Back     alignment and domain information
>KOG3270|consensus Back     alignment and domain information
>KOG3270|consensus Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0774|consensus Back     alignment and domain information
>KOG2129|consensus Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC [] Back     alignment and domain information
>KOG2391|consensus Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>KOG2129|consensus Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4403|consensus Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0995|consensus Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG2675|consensus Back     alignment and domain information
>KOG2391|consensus Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG4451|consensus Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG2236|consensus Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A Back     alignment and domain information
>KOG3753|consensus Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0995|consensus Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0972|consensus Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
3q2s_C229 Cleavage and polyadenylation specificity factor S; 9e-04
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Length = 192 Back     alignment and structure
 Score = 54.8 bits (131), Expect = 3e-09
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 99  NNVSTDTVLALLQTAASEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQL 158
           N +S+  ++ L+QT   ++E               I + +   +      E L E+K ++
Sbjct: 36  NLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKV 95

Query: 159 LDLNEQLTQLSKSVESKVELIKSHKN-NVSTDTVLALLQTAASEIEEESEKVPEEFLN-- 215
             L E    L     +  +   S  +       +   L+    +++EES ++     +  
Sbjct: 96  QALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSID 155

Query: 216 GTIDVDKFLETFTPKRILMHLRRIKADKMAE 246
              D+D+F++ +   R   HLRR K     +
Sbjct: 156 SADDLDQFIKNYLDIRTQYHLRREKLATWDK 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 99.93
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 99.83
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.28
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 92.2
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.46
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 89.37
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 88.26
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 86.42
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 86.35
2wt7_B90 Transcription factor MAFB; transcription, transcri 86.25
3thf_A190 Protein shroom; coiled-coil, anti-parallel, helica 85.27
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 84.56
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 83.82
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.49
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 83.26
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 83.2
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure
Probab=99.93  E-value=8.7e-26  Score=201.40  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=138.3

Q ss_pred             hhhcCCHHHHHHHHHHH-H---HHHHhhhhhhhhHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1409          97 HKNNVSTDTVLALLQTA-A---SEIEEESETTESNEQKEMLIASNKSLAEYNLSQEEALLEKKSQLLDLNEQLTQLSKSV  172 (320)
Q Consensus        97 ~~~~~Sp~~Ll~lLq~a-~---~~~eeesE~k~l~~~~e~ll~~N~~LAe~NL~~ep~Leelr~ql~~~y~el~~L~~~~  172 (320)
                      ....+|.+.|..+|++. .   ..+.+.+.+++++.+++++    +++|+.++++++++++.|.++..++.+++.|+.+|
T Consensus        34 ~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~  109 (192)
T 2p22_C           34 GINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLENARILESKY  109 (192)
T ss_dssp             GGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999997 4   6777888999999999999    88999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy1409         173 ESKVELIK-SHKNNVSTDTVLALLQTAASEIEEESEKVPEEFLNG--TIDVDKFLETFTPKRILMHLRRIKADKMAEM  247 (320)
Q Consensus       173 ~~k~~kl~-~~~~~~sp~~l~~~Lq~a~~eaEeeSE~lae~FL~G--~idv~~Fl~~f~~~R~~~h~Rk~K~e~l~~~  247 (320)
                      ..|+++++ .++++|||++|+++|++++.++|++|++|+++|++|  +++|++||.+|++.|++||+||.|.++|.+.
T Consensus       110 ~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e~  187 (192)
T 2p22_C          110 VASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDKQ  187 (192)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999995 799999999999999999999999999999999998  8999999999999999999999999999863
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d2f66c165 Vacuolar protein sorting-associated protein 37, VP 98.88
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS37 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 37, VPS37 (SRN2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.4e-10  Score=79.30  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=54.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHhHHHHHH--hcCCCCHHHHHHHhhHHHHHHHHhHHHHHHH
Q psy1409         184 NNVSTDTVLALLQTAASEIEEESEKVPEEF--LNGTIDVDKFLETFTPKRILMHLRRIKADKM  244 (320)
Q Consensus       184 ~~~sp~~l~~~Lq~a~~eaEeeSE~lae~F--L~G~idv~~Fl~~f~~~R~~~h~Rk~K~e~l  244 (320)
                      .+||+.+|..+|+..+.++|++|..|.+.-  .+|.-+||.||.+|...|+.||.||.|.+-|
T Consensus         2 ~ky~~~~Lk~kL~~~~~~ld~~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKLaTW   64 (65)
T d2f66c1           2 KKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATW   64 (65)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            589999999999999999999999998874  3666679999999999999999999887654