Psyllid ID: psy14114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
cccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MKQFVKDAGSALSRVVQLTEeklgtsekTELDAHFeslagrsdvtkLWTEKIvgdtaavltpnpgnrveDFLFEKIekkrpsrlsnleylgldmteagnafgpgttyGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
mkqfvkdagsalsrvvqlteeklgtsekteldahfeslagrsdvtkLWTEKIVGdtaavltpnpgnrVEDFLfekiekkrpsrlSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKErslleskrldldscknrvrkarsllgtqsnaerdlRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
*************************************LAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIE*****RLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVK*********************************************QAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ********
*******AGSALSRVVQ****************HFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRV*************************************TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDS**************************SEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE***
***********LSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query248 2.2.26 [Sep-21-2011]
Q9JK48 365 Endophilin-B1 OS=Mus musc yes N/A 0.987 0.671 0.544 6e-80
Q5ZIR1 366 Endophilin-B1 OS=Gallus g yes N/A 0.987 0.669 0.544 6e-80
Q6AYE2 365 Endophilin-B1 OS=Rattus n yes N/A 0.987 0.671 0.544 8e-80
Q5R8P5 365 Endophilin-B1 OS=Pongo ab yes N/A 0.987 0.671 0.540 2e-79
Q9Y371 365 Endophilin-B1 OS=Homo sap yes N/A 0.987 0.671 0.540 2e-79
Q32LM0 365 Endophilin-B1 OS=Bos taur yes N/A 0.987 0.671 0.540 3e-79
Q5ZJ81 403 Endophilin-B2 OS=Gallus g no N/A 1.0 0.615 0.503 4e-75
Q08DK5 395 Endophilin-B2 OS=Bos taur no N/A 1.0 0.627 0.489 2e-72
Q9NR46 395 Endophilin-B2 OS=Homo sap no N/A 1.0 0.627 0.489 5e-72
Q8R3V5 400 Endophilin-B2 OS=Mus musc no N/A 0.991 0.615 0.492 1e-71
>sp|Q9JK48|SHLB1_MOUSE Endophilin-B1 OS=Mus musculus GN=Sh3glb1 PE=1 SV=1 Back     alignment and function desciption
 Score =  296 bits (759), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 193/246 (78%), Gaps = 1/246 (0%)

Query: 1   MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVL 60
           +K+   DAG+ LSR VQ TEEKLG +EKTELDAH E+L  +++ TK+WTEKI+  T  +L
Sbjct: 8   VKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLL 67

Query: 61  TPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120
            PNP  R+E+F++EK+++K PSR++N E LG  M +AG  FGPGT YG ALIK G+ +++
Sbjct: 68  QPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKR 127

Query: 121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180
           +G A+RE + ++ ++F+ PL+ F+EG+ KTI KER LL++KRLDLD+ K R++KA++   
Sbjct: 128 IGTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKA-AE 186

Query: 181 TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ 240
           T+S++E++LRI QSEFDRQAEIT+LLLEG+ ++H  HLRCL++FVEAQ+ YYA C++ M 
Sbjct: 187 TKSSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYML 246

Query: 241 DLKNEL 246
           DL+ +L
Sbjct: 247 DLQKQL 252
May be required for normal outer mitochondrial membrane dynamics. Required for coatomer-mediated retrograde transport in certain cells. May recruit other proteins to membranes with high curvature. May promote membrane fusion.
Mus musculus (taxid: 10090)
>sp|Q5ZIR1|SHLB1_CHICK Endophilin-B1 OS=Gallus gallus GN=SH3GLB1 PE=2 SV=1 Back     alignment and function description
>sp|Q6AYE2|SHLB1_RAT Endophilin-B1 OS=Rattus norvegicus GN=Sh3glb1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R8P5|SHLB1_PONAB Endophilin-B1 OS=Pongo abelii GN=SH3GLB1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y371|SHLB1_HUMAN Endophilin-B1 OS=Homo sapiens GN=SH3GLB1 PE=1 SV=1 Back     alignment and function description
>sp|Q32LM0|SHLB1_BOVIN Endophilin-B1 OS=Bos taurus GN=SH3GLB1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ81|SHLB2_CHICK Endophilin-B2 OS=Gallus gallus GN=SH3GLB2 PE=2 SV=1 Back     alignment and function description
>sp|Q08DK5|SHLB2_BOVIN Endophilin-B2 OS=Bos taurus GN=SH3GLB2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NR46|SHLB2_HUMAN Endophilin-B2 OS=Homo sapiens GN=SH3GLB2 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3V5|SHLB2_MOUSE Endophilin-B2 OS=Mus musculus GN=Sh3glb2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
270006959 386 hypothetical protein TcasGA2_TC013394 [T 0.991 0.637 0.720 1e-103
189237534339 PREDICTED: similar to endophilin B CG983 0.991 0.725 0.720 1e-102
328776247 398 PREDICTED: endophilin-B1 isoform 1 [Apis 0.991 0.618 0.708 1e-101
345497266302 PREDICTED: endophilin-B1-like isoform 2 0.991 0.814 0.708 1e-101
170056795 372 endophilin b [Culex quinquefasciatus] gi 0.991 0.661 0.724 1e-101
157124075 351 endophilin b [Aedes aegypti] gi|10887412 0.991 0.700 0.724 1e-101
350422053 350 PREDICTED: endophilin-B1-like [Bombus im 0.995 0.705 0.689 1e-101
340724918 350 PREDICTED: endophilin-B1-like [Bombus te 0.995 0.705 0.689 1e-101
307165871345 Endophilin-B1 [Camponotus floridanus] 0.995 0.715 0.686 1e-101
383854951346 PREDICTED: endophilin-B1-like [Megachile 0.995 0.713 0.686 1e-101
>gi|270006959|gb|EFA03407.1| hypothetical protein TcasGA2_TC013394 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/247 (72%), Positives = 212/247 (85%), Gaps = 1/247 (0%)

Query: 1   MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVL 60
           +K+ VKDAG+A+SRVVQ+TEEKLGTSEKTELDAHFE+L  R++ TK WTEKIV D  AVL
Sbjct: 5   VKKIVKDAGAAISRVVQMTEEKLGTSEKTELDAHFENLWERAENTKNWTEKIVRDAEAVL 64

Query: 61  TPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120
            PNPGNR+EDF++EKI+KKRPSRLSNLEYLGLDM EAGN +GPGT YG+ LIKVGQ+EQK
Sbjct: 65  IPNPGNRIEDFIYEKIDKKRPSRLSNLEYLGLDMIEAGNVYGPGTAYGSCLIKVGQWEQK 124

Query: 121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180
           LG  ER+F+ SA + F QP++KFL+ E+KTI+KE++LLE KRLDLD+CKNRVRKARS+LG
Sbjct: 125 LGQNERDFIGSAAMCFTQPMRKFLDTEIKTILKEKNLLEVKRLDLDACKNRVRKARSMLG 184

Query: 181 TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ 240
            Q  AERDLRIAQSEFDRQAEITKLLLEG+ +SH +HLRCL EFVE Q  +Y+ C  IM 
Sbjct: 185 -QPAAERDLRIAQSEFDRQAEITKLLLEGIGSSHAAHLRCLQEFVETQARFYSQCTTIMT 243

Query: 241 DLKNELS 247
           DL+ EL+
Sbjct: 244 DLQRELA 250

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189237534|ref|XP_973696.2| PREDICTED: similar to endophilin B CG9834-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328776247|ref|XP_623588.2| PREDICTED: endophilin-B1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|345497266|ref|XP_003427949.1| PREDICTED: endophilin-B1-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|170056795|ref|XP_001864192.1| endophilin b [Culex quinquefasciatus] gi|167876479|gb|EDS39862.1| endophilin b [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157124075|ref|XP_001660319.1| endophilin b [Aedes aegypti] gi|108874120|gb|EAT38345.1| AAEL009754-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|350422053|ref|XP_003493041.1| PREDICTED: endophilin-B1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340724918|ref|XP_003400825.1| PREDICTED: endophilin-B1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307165871|gb|EFN60226.1| Endophilin-B1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383854951|ref|XP_003702983.1| PREDICTED: endophilin-B1-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
FB|FBgn0034433 390 endoB "endophilin B" [Drosophi 0.995 0.633 0.643 1.2e-83
UNIPROTKB|Q5ZJ81 403 SH3GLB2 "Endophilin-B2" [Gallu 0.713 0.439 0.570 1.8e-74
ZFIN|ZDB-GENE-040426-833 402 sh3glb2b "SH3-domain GRB2-like 0.709 0.437 0.539 2e-73
MGI|MGI:1859730 365 Sh3glb1 "SH3-domain GRB2-like 0.987 0.671 0.544 4.6e-73
UNIPROTKB|D0G7F3 365 SH3GLB1 "Uncharacterized prote 0.987 0.671 0.544 5.9e-73
RGD|1304859 365 Sh3glb1 "SH3-domain GRB2-like 0.987 0.671 0.544 5.9e-73
UNIPROTKB|Q6AYE2 365 Sh3glb1 "Endophilin-B1" [Rattu 0.987 0.671 0.544 5.9e-73
UNIPROTKB|F1N7B9334 SH3GLB1 "Endophilin-B1" [Bos t 0.987 0.733 0.540 9.6e-73
UNIPROTKB|Q32LM0 365 SH3GLB1 "Endophilin-B1" [Bos t 0.987 0.671 0.540 9.6e-73
UNIPROTKB|Q9Y371 365 SH3GLB1 "Endophilin-B1" [Homo 0.987 0.671 0.540 9.6e-73
FB|FBgn0034433 endoB "endophilin B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 166/258 (64%), Positives = 200/258 (77%)

Query:     1 MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVL 60
             +K  VK+AGS +SRVVQLTEEKLGT+E+TE D HF++LA R+DVTK WTEKIV DT +VL
Sbjct:    10 VKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAERADVTKTWTEKIVRDTESVL 69

Query:    61 TPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120
              PNP NRVEDF+FEKIEK +P RLSNLE+L LDM EAG  FG    YG ALIKVGQ EQK
Sbjct:    70 IPNPQNRVEDFIFEKIEKSKPKRLSNLEHLALDMIEAGGDFGQDLPYGQALIKVGQAEQK 129

Query:   121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180
             LG  E +F+ ++ + F QPL+KFL+GEMKTI KER +LE+KRLDLD+CKNRV+KARS+LG
Sbjct:   130 LGQCEHDFIATSGICFTQPLRKFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLG 189

Query:   181 TQSN-----------AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQV 229
              QS            AERDLR+AQ+EFDRQAEITKLLL+G+ TS  SHLR LH F++ QV
Sbjct:   190 QQSKDGISPEAVLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQV 249

Query:   230 NYYANCHKIMQDLKNELS 247
              YY  C  +M+ L+ EL+
Sbjct:   250 RYYKQCGDVMEQLQRELA 267
GO:0016044 "cellular membrane organization" evidence=NAS
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|Q5ZJ81 SH3GLB2 "Endophilin-B2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-833 sh3glb2b "SH3-domain GRB2-like endophilin B2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1859730 Sh3glb1 "SH3-domain GRB2-like B1 (endophilin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D0G7F3 SH3GLB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304859 Sh3glb1 "SH3-domain GRB2-like endophilin B1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AYE2 Sh3glb1 "Endophilin-B1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7B9 SH3GLB1 "Endophilin-B1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LM0 SH3GLB1 "Endophilin-B1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y371 SH3GLB1 "Endophilin-B1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JK48SHLB1_MOUSENo assigned EC number0.54470.98790.6712yesN/A
Q5ZIR1SHLB1_CHICKNo assigned EC number0.54470.98790.6693yesN/A
Q5R8P5SHLB1_PONABNo assigned EC number0.54060.98790.6712yesN/A
Q6AYE2SHLB1_RATNo assigned EC number0.54470.98790.6712yesN/A
Q9Y371SHLB1_HUMANNo assigned EC number0.54060.98790.6712yesN/A
Q32LM0SHLB1_BOVINNo assigned EC number0.54060.98790.6712yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
cd07594229 cd07594, BAR_Endophilin_B, The Bin/Amphiphysin/Rvs 1e-125
cd07617220 cd07617, BAR_Endophilin_B2, The Bin/Amphiphysin/Rv 8e-97
cd07616229 cd07616, BAR_Endophilin_B1, The Bin/Amphiphysin/Rv 3e-91
smart00721239 smart00721, BAR, BAR domain 5e-56
pfam03114230 pfam03114, BAR, BAR domain 2e-53
cd07593215 cd07593, BAR_MUG137_fungi, The Bin/Amphiphysin/Rvs 1e-22
cd07592223 cd07592, BAR_Endophilin_A, The Bin/Amphiphysin/Rvs 6e-20
cd07613223 cd07613, BAR_Endophilin_A1, The Bin/Amphiphysin/Rv 3e-14
cd07614223 cd07614, BAR_Endophilin_A2, The Bin/Amphiphysin/Rv 3e-14
cd07615223 cd07615, BAR_Endophilin_A3, The Bin/Amphiphysin/Rv 9e-14
cd07307194 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain 8e-13
cd07600242 cd07600, BAR_Gvp36, The Bin/Amphiphysin/Rvs (BAR) 5e-07
cd07595244 cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin 9e-07
cd07605223 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as 0.001
cd07590225 cd07590, BAR_Bin3, The Bin/Amphiphysin/Rvs (BAR) d 0.004
>gnl|CDD|153278 cd07594, BAR_Endophilin_B, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-125
 Identities = 151/230 (65%), Positives = 189/230 (82%), Gaps = 1/230 (0%)

Query: 17  QLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKI 76
           Q TEEKLGT+EKTE DAHFE+L  R+D TK+WTEKI+  T AVL PNP  RVEDF++EK+
Sbjct: 1   QFTEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKL 60

Query: 77  EKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSF 136
           ++K+P RLSNLE LG  M EAGN FGPGT YG+ALIKVGQ ++KLG AEREF+ ++  +F
Sbjct: 61  DRKKPDRLSNLEQLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNF 120

Query: 137 VQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEF 196
           +QPL+ FLEG+MKTI KER LLE+KRLDLD+CK RV+KA+S    +  AE+DLR+AQSEF
Sbjct: 121 LQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQ-AEQDLRVAQSEF 179

Query: 197 DRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246
           DRQAEITKLLLEG+ ++H +HLRCL +FVEAQ+ YYA C++ M DL+ +L
Sbjct: 180 DRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQL 229

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Length = 229
>gnl|CDD|153301 cd07617, BAR_Endophilin_B2, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 Back     alignment and domain information
>gnl|CDD|153300 cd07616, BAR_Endophilin_B1, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 Back     alignment and domain information
>gnl|CDD|214787 smart00721, BAR, BAR domain Back     alignment and domain information
>gnl|CDD|145973 pfam03114, BAR, BAR domain Back     alignment and domain information
>gnl|CDD|153277 cd07593, BAR_MUG137_fungi, The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins Back     alignment and domain information
>gnl|CDD|153276 cd07592, BAR_Endophilin_A, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A Back     alignment and domain information
>gnl|CDD|153297 cd07613, BAR_Endophilin_A1, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 Back     alignment and domain information
>gnl|CDD|153298 cd07614, BAR_Endophilin_A2, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 Back     alignment and domain information
>gnl|CDD|153299 cd07615, BAR_Endophilin_A3, The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 Back     alignment and domain information
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>gnl|CDD|153284 cd07600, BAR_Gvp36, The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins Back     alignment and domain information
>gnl|CDD|153279 cd07595, BAR_RhoGAP_Rich-like, The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins Back     alignment and domain information
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes Back     alignment and domain information
>gnl|CDD|153274 cd07590, BAR_Bin3, The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
cd07616229 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do 100.0
cd07594229 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom 100.0
cd07617220 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do 100.0
cd07613223 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do 100.0
cd07614223 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do 100.0
KOG3725|consensus 375 100.0
cd07615223 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do 100.0
cd07592223 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom 100.0
cd07619248 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
KOG1118|consensus 366 100.0
cd07595244 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) 100.0
cd07618246 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07593215 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom 100.0
cd07620257 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
PF10455289 BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr 100.0
cd07600242 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
smart00721239 BAR BAR domain. 100.0
PF03114229 BAR: BAR domain; InterPro: IPR004148 Endocytosis a 100.0
cd07612211 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B 99.9
cd07588211 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma 99.88
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 99.88
cd07611211 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) 99.88
cd07590225 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B 99.87
cd07603200 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of 99.87
cd07637200 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 99.87
cd07591224 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o 99.86
cd07638200 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.86
cd07606202 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain 99.86
cd07307194 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri 99.86
cd07604215 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of 99.85
cd07601215 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A 99.85
cd07641215 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 99.85
KOG3771|consensus 460 99.83
cd07642215 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.83
cd07602207 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR 99.82
cd07636207 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G 99.8
cd07634207 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai 99.79
cd07635207 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.78
cd07633207 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of 99.76
cd07640213 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 99.7
cd07631215 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of 99.66
cd07589195 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of 99.65
cd07599216 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o 99.64
cd07632215 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.6
PF06456229 Arfaptin: Arfaptin-like domain; InterPro: IPR01050 99.4
KOG0521|consensus 785 99.34
cd07624200 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o 99.32
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 99.29
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 99.28
cd07628185 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of 99.28
cd07596218 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So 99.22
cd07660201 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain 99.2
cd00011203 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do 99.15
cd07622201 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.15
cd07629187 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of 99.03
cd07663218 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.02
KOG3876|consensus341 99.01
cd07623224 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.01
cd07621219 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of 99.01
cd07666243 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.0
cd07630198 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain 98.93
cd07667240 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of 98.93
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 98.91
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 98.9
cd07659215 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.82
cd07665234 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S 98.78
PF06730219 FAM92: FAM92 protein; InterPro: IPR009602 This fam 98.77
cd07662218 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S 98.71
cd07661204 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of 98.63
cd07626199 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain 98.52
cd07609214 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domai 98.43
cd07607209 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai 98.38
cd07645226 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as 98.38
cd07646232 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th 98.35
PF08397219 IMD: IRSp53/MIM homology domain; InterPro: IPR0136 98.3
cd07605223 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5 98.3
cd07625230 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of 98.24
PF10456237 BAR_3_WASP_bdg: WASP-binding domain of Sorting nex 97.98
cd07668210 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.97
KOG1451|consensus 812 97.94
cd07644215 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as 97.93
cd07669207 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of 97.83
cd07670207 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of 97.8
cd07608192 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) dom 97.71
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 97.67
KOG4270|consensus 577 97.46
cd07643231 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I 97.31
cd07657237 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin 96.57
KOG3651|consensus429 96.54
cd07655258 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ 96.34
cd07676253 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A 96.27
cd07597246 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S 96.08
KOG2273|consensus503 96.01
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 95.94
KOG3891|consensus 436 95.84
cd07649233 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am 95.75
cd07651236 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology 95.27
cd07606202 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain 94.0
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 93.82
KOG1660|consensus399 93.77
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 93.55
cd07675252 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ 93.13
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 92.68
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 92.57
cd07610191 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or 92.24
cd07681258 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin 91.22
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 91.09
cd07619248 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of 91.06
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 88.23
cd07307194 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri 88.02
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 87.71
PF03114229 BAR: BAR domain; InterPro: IPR004148 Endocytosis a 87.57
PF13805271 Pil1: Eisosome component PIL1; PDB: 3PLT_B. 87.37
smart00721239 BAR BAR domain. 86.83
cd07685237 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp 86.54
cd07680258 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin 86.19
cd07650228 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and 86.1
cd07638200 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 85.82
cd07618246 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of 83.59
cd07603200 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of 81.17
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 Back     alignment and domain information 
Probab=100.00  E-value=6.1e-62  Score=405.08  Aligned_cols=229  Identities=55%  Similarity=0.959  Sum_probs=222.2

Q ss_pred             HHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHH
Q psy14114         17 QLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTE   96 (248)
Q Consensus        17 Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~   96 (248)
                      |++.||+|++|+|++|+||.+|++++|.++.|+++|++.+..|+||||+.|++.++++|++++.|.+|+|.+.||++|++
T Consensus         1 q~~~EkiG~AE~Te~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~   80 (229)
T cd07616           1 QFTEEKFGQAEKTELDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMID   80 (229)
T ss_pred             CcchhhccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114         97 AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR  176 (248)
Q Consensus        97 ~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak  176 (248)
                      +|.+||++|+||.||.+||+++.+||+++..|+..+.++|+.||+++++++|++|.++||+|+++|||||++|++++|++
T Consensus        81 ~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk  160 (229)
T cd07616          81 AGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAK  160 (229)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114        177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL  246 (248)
Q Consensus       177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l  246 (248)
                      +++.... ++++++.|+++|++++|.+...|.+|.+++++++.+|.+||+||+.||++|+++|.+|+..|
T Consensus       161 ~~~~~~~-~e~elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l  229 (229)
T cd07616         161 VAEARAA-AEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQL  229 (229)
T ss_pred             cchhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7665543 79999999999999999999999999999999999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B Back     alignment and domain information
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 Back     alignment and domain information
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 Back     alignment and domain information
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 Back     alignment and domain information
>KOG3725|consensus Back     alignment and domain information
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 Back     alignment and domain information
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A Back     alignment and domain information
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 Back     alignment and domain information
>KOG1118|consensus Back     alignment and domain information
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 Back     alignment and domain information
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins Back     alignment and domain information
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 Back     alignment and domain information
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins Back     alignment and domain information
>smart00721 BAR BAR domain Back     alignment and domain information
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 Back     alignment and domain information
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II Back     alignment and domain information
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins Back     alignment and domain information
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) Back     alignment and domain information
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins Back     alignment and domain information
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>KOG3771|consensus Back     alignment and domain information
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase Back     alignment and domain information
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like Back     alignment and domain information
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 Back     alignment and domain information
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 Back     alignment and domain information
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 Back     alignment and domain information
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein Back     alignment and domain information
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins Back     alignment and domain information
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 Back     alignment and domain information
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p Back     alignment and domain information
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin Back     alignment and domain information
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 Back     alignment and domain information
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p Back     alignment and domain information
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>KOG3876|consensus Back     alignment and domain information
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 Back     alignment and domain information
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins Back     alignment and domain information
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 Back     alignment and domain information
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 Back     alignment and domain information
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length Back     alignment and domain information
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa Back     alignment and domain information
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins Back     alignment and domain information
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3 Back     alignment and domain information
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins Back     alignment and domain information
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1 Back     alignment and domain information
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53 Back     alignment and domain information
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family Back     alignment and domain information
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p Back     alignment and domain information
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain Back     alignment and domain information
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 Back     alignment and domain information
>KOG1451|consensus Back     alignment and domain information
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2 Back     alignment and domain information
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 Back     alignment and domain information
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 Back     alignment and domain information
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>KOG4270|consensus Back     alignment and domain information
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis Back     alignment and domain information
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases Back     alignment and domain information
>KOG3651|consensus Back     alignment and domain information
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17 Back     alignment and domain information
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 Back     alignment and domain information
>KOG2273|consensus Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>KOG3891|consensus Back     alignment and domain information
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 Back     alignment and domain information
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>KOG1660|consensus Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B Back     alignment and domain information
>smart00721 BAR BAR domain Back     alignment and domain information
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase Back     alignment and domain information
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) Back     alignment and domain information
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein Back     alignment and domain information
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 Back     alignment and domain information
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
1zww_A256 Crystal Structure Of Endophilin-A1 Bar Domain Lengt 7e-13
2d4c_A256 Crystal Structure Of The Endophilin Bar Domain Muta 3e-12
2z0v_A240 Crystal Structure Of Bar Domain Of Endophilin-Iii L 9e-12
1x03_A252 Crystal Structure Of Endophilin Bar Domain Length = 2e-11
2c08_A204 Rat Endophilin A1 Bar Domain Length = 204 5e-09
1x04_A230 Crystal Structure Of Endophilin Bar Domain (Mutant) 2e-06
>pdb|1ZWW|A Chain A, Crystal Structure Of Endophilin-A1 Bar Domain Length = 256 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 14/234 (5%)
Query: 14  RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
           +  Q   EK+G +E T+LD  F+ +  + DVT     +I+  T   L PNP +R +  + 
Sbjct: 12  KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMI 71
Query: 74  EKIEKKR-----PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
             + K R     P        L   M + G   G    +G AL +VG+  ++L   +   
Sbjct: 72  NTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSL 131
Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERD 188
                 +F+ PLQ   + +++ I      LE +RLD    K R  K           + +
Sbjct: 132 DMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKI---------PDEE 182
Query: 189 LRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDL 242
           LR A  +FD   EI +  +  +       +  L   V+AQ+ Y+    +I+Q +
Sbjct: 183 LRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQV 236
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant Length = 256 Back     alignment and structure
>pdb|2Z0V|A Chain A, Crystal Structure Of Bar Domain Of Endophilin-Iii Length = 240 Back     alignment and structure
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain Length = 252 Back     alignment and structure
>pdb|2C08|A Chain A, Rat Endophilin A1 Bar Domain Length = 204 Back     alignment and structure
>pdb|1X04|A Chain A, Crystal Structure Of Endophilin Bar Domain (Mutant) Length = 230 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
1zww_A256 SH3-containing GRB2-like protein 2; coiled coil, t 7e-57
2z0v_A240 SH3-containing GRB2-like protein 3; helix bundle, 2e-53
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 1e-17
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 4e-17
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 5e-17
4avm_A237 Bridging integrator 2; protein binding, plasma mem 3e-11
2q12_A265 DIP13 alpha, DCC-interacting protein 13 alpha; APP 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2q13_A 385 DCC-interacting protein 13 alpha; APPL1, BAR domai 7e-05
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256 Back     alignment and structure
 Score =  181 bits (459), Expect = 7e-57
 Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 14/243 (5%)

Query: 11  ALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVED 70
              +  Q   EK+G +E T+LD  F+ +  + DVT     +I+  T   L PNP +R + 
Sbjct: 9   QFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKL 68

Query: 71  FLFEKIEK-----KRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAE 125
            +   + K     K P        L   M + G   G    +G AL +VG+  ++L   +
Sbjct: 69  SMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVK 128

Query: 126 REFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNA 185
                    +F+ PLQ   + +++ I      LE +RLD    K R  K           
Sbjct: 129 DSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKI---------P 179

Query: 186 ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245
           + +LR A  +FD   EI +  +  +       +  L   V+AQ+ Y+    +I+Q +   
Sbjct: 180 DEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVR 239

Query: 246 LSK 248
           L +
Sbjct: 240 LEE 242
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240 Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Length = 251 Back     alignment and structure
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244 Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Length = 237 Back     alignment and structure
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Length = 265 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
1zww_A256 SH3-containing GRB2-like protein 2; coiled coil, t 100.0
2z0v_A240 SH3-containing GRB2-like protein 3; helix bundle, 100.0
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 99.96
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 99.95
4avm_A237 Bridging integrator 2; protein binding, plasma mem 99.88
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 99.87
2q12_A265 DIP13 alpha, DCC-interacting protein 13 alpha; APP 99.84
2q13_A 385 DCC-interacting protein 13 alpha; APPL1, BAR domai 99.77
4h8s_A 407 DCC-interacting protein 13-beta; BAR domain, pleck 99.52
1i4d_A224 Arfaptin 2, partner of RAC1; coiled coil, G-protei 99.25
4akv_A386 Sorting nexin-33; transport protein, organelle bio 98.63
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 98.56
2ykt_A253 Brain-specific angiogenesis inhibitor 1-associate 98.2
3ok8_A222 Brain-specific angiogenesis inhibitor 1-associate 97.82
2d1l_A253 Metastasis suppressor protein 1; IRSP53, actin bin 97.47
3haj_A 486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 96.91
3aco_A 350 Pacsin2, protein kinase C and casein kinase substr 96.85
4dyl_A 406 Tyrosine-protein kinase FES/FPS; structural genomi 96.76
2efl_A305 Formin-binding protein 1; EFC domain, structural g 96.66
2efk_A301 CDC42-interacting protein 4; EFC domain, structura 96.65
3caz_A294 BAR protein; thermo-acidophilic RED ALGA, protein 96.39
2x3v_A337 Syndapin I, protein kinase C and casein kinase sub 96.37
3abh_A312 Pacsin2, protein kinase C and casein kinase substr 96.33
3g9g_A287 Suppressor of yeast profilin deletion; SYP1, BAR d 95.99
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 95.95
3qwe_A279 GMIP, GEM-interacting protein; structural genomics 95.74
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 95.3
3m3w_A 320 Pacsin3, protein kinase C and casein kinase II sub 94.49
2q13_A 385 DCC-interacting protein 13 alpha; APPL1, BAR domai 85.72
2q12_A265 DIP13 alpha, DCC-interacting protein 13 alpha; APP 81.5
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Back     alignment and structure
Probab=100.00  E-value=2.2e-53  Score=364.40  Aligned_cols=233  Identities=26%  Similarity=0.392  Sum_probs=188.0

Q ss_pred             hhHHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhh-----cC
Q psy14114          6 KDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEK-----KR   80 (248)
Q Consensus         6 ~~~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~-----~~   80 (248)
                      .-++++|+|++||++||+|++|+|++|+||.++|+++|.++.++++|++.++.|++|||+.|.+.+..+.+++     +.
T Consensus         4 ~g~kK~~~ra~q~~~ek~G~~E~Tel~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~   83 (256)
T 1zww_A            4 AGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKG   83 (256)
T ss_dssp             -----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC------------------
T ss_pred             hhHHHHHHHHHHHHHhHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhccccc
Confidence            3478999999999999999999999999999999999999999999999999999999999988655444433     23


Q ss_pred             CCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh
Q psy14114         81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES  160 (248)
Q Consensus        81 ~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~  160 (248)
                      +.+|.+...||.+|.++|.++|++++||.||..||.++.+||+++..++..|..+|++||++|++.+|++|.++||+|++
T Consensus        84 ~~~p~~~~~L~~~m~~~~~~l~~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~  163 (256)
T 1zww_A           84 PGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEG  163 (256)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555557999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114        161 KRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ  240 (248)
Q Consensus       161 ~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~  240 (248)
                      +|||||++|+++++.         +++|++.|+++|+.+++++...|.+|++++++++.+|.+||++|++||++|+++|+
T Consensus       164 ~rLdyD~~k~k~~k~---------~eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~~~e~L~  234 (256)
T 1zww_A          164 RRLDFGYKKKRQGKI---------PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQ  234 (256)
T ss_dssp             HHHHHHHHHHTTTTS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998753         68899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy14114        241 DLKNELS  247 (248)
Q Consensus       241 ~l~~~l~  247 (248)
                      ++++.|+
T Consensus       235 ~l~~~l~  241 (256)
T 1zww_A          235 QVTVRLE  241 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999985
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Back     alignment and structure
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Back     alignment and structure
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Back     alignment and structure
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A Back     alignment and structure
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus} Back     alignment and structure
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} Back     alignment and structure
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Back     alignment and structure
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria} Back     alignment and structure
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Back     alignment and structure
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A Back     alignment and structure
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Back     alignment and structure
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Back     alignment and structure
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d2d4ca1237 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap 2e-41
d1urua_217 a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila 2e-16
d2elba1268 a.238.1.1 (A:6-273) DCC-interacting protein 13-alp 1e-10
d1y2oa1248 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain 6e-10
d1i4da_200 a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum 2e-09
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237 Back     information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (352), Expect = 2e-41
 Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 18/242 (7%)

Query: 14  RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
           +  Q   EK+G +E T+LD  F+ +  + DVT     +I+  T   L PNP +R +  + 
Sbjct: 2   KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMI 61

Query: 74  EKIEK-----KRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
             + K     K P        L   M + G   G    +G AL +VG+  ++L   +   
Sbjct: 62  NTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSL 121

Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKE----RSLLESKRLDLDSCKNRVRKARSLLGTQSN 184
                 +F+ PLQ   + +++ I          LE +RLD D  K R  K          
Sbjct: 122 DIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKI--------- 172

Query: 185 AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244
            + +LR A  +FD   EI +  +  +       +  L   V+AQ+ Y+    +I+Q +  
Sbjct: 173 PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTV 232

Query: 245 EL 246
            L
Sbjct: 233 RL 234
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 268 Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d2d4ca1237 Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 99.86
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 99.81
d2elba1268 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 99.75
d1y2oa1248 BAP2/IRSp53 N-terminal domain {Human (Homo sapiens 99.71
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 96.85
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 94.38
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 89.82
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-41  Score=279.79  Aligned_cols=226  Identities=27%  Similarity=0.411  Sum_probs=199.3

Q ss_pred             HHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhh-----cCCCCCCch
Q psy14114         13 SRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEK-----KRPSRLSNL   87 (248)
Q Consensus        13 ~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~-----~~~~~~~~~   87 (248)
                      ||++||++||+|++++|++|+||.++|+++|.++.++.+|++.+..|++|||+.+....+......     +.+..+.+.
T Consensus         1 nR~~q~~~ek~G~~e~T~ld~~f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (237)
T d2d4ca1           1 HKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAE   80 (237)
T ss_dssp             CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC-----------------CCCHH
T ss_pred             CchhHHHHhHcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhcccccccchhhhh
Confidence            699999999999999999999999999999999999999999999999999877655543222211     233567788


Q ss_pred             hHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH----HHHHhhHhhhhh
Q psy14114         88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTI----VKERSLLESKRL  163 (248)
Q Consensus        88 ~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i----~~~rkkl~~~RL  163 (248)
                      ..+|.+|.++|.++++++.+|.+|.+||.++..|+.++..++..+...|+.||++|++.+++.+    .+.|+.++..|+
T Consensus        81 ~~l~~~~~~~~~~~~~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~d~~~~~~~~~~~rk~~d~~~~  160 (237)
T d2d4ca1          81 ALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRL  160 (237)
T ss_dssp             HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888875    555888888888


Q ss_pred             hhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114        164 DLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLK  243 (248)
Q Consensus       164 d~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~  243 (248)
                      +||+++.+..+.         ++++++.|+.+|+.+++++...|..+++++++++..|..||.+|+.||+.|++.|++|+
T Consensus       161 ~~~~~~~k~~~~---------~~e~l~~a~~~~e~~~~~~~~~l~~l~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~  231 (237)
T d2d4ca1         161 DFDYKKKRQGKI---------PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVT  231 (237)
T ss_dssp             HHHHHHHHHSSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888765431         67899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc
Q psy14114        244 NELS  247 (248)
Q Consensus       244 ~~l~  247 (248)
                      ++|+
T Consensus       232 ~~l~  235 (237)
T d2d4ca1         232 VRLE  235 (237)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9986
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure