Psyllid ID: psy14141

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70

MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK

ccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEccccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEEEcccEEEccccEEEEcccEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEEccEEEcccccccccEEEEEEEEEcccEEEEEEEcccccEEEEEEEEEccccccEEEEEEcccccccccccEEEEEEEEccccEEEEEEcccEEEEEEEEEEEEcccccccccEEEEEEEccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEEccccccccccEEEEcccccEEEEccccEEEcccccccccccEEEEEEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEcccccccccEEcccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccEEEEEccccEEEEccccccc

ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHcccccEcHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEccccccccEEEEEEEEEccccccccccccccccccEEEEEEcccccEEcccEEEcccccEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccEEEccEEEccccEEEEEEEccccccEEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEccccEEEccccEEEEEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEEEcccccccccccEccccccEEEEEEEccccccccccEEEEcccccEEEEccccEEEEccccccccccEEEEEccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEccccccccccccccccccccEEEEEcccccEEEEEEEcccccEEEEEEEccccHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEEEEEcccEEEcccccccc

mfsssssnketqhmngtsmsaphaTGCVALIISALQqqglsyspySIRRALEITaqyipsvepyaqgfGLLQVEKALEWLEKYHAELESKVRFHVtcagsssknkgihlrvgdqqvpkevnvsvepvfadsdnivfdpeikyNFQMSLSltcsvpwvqfpnhlelmnisrqfnvkvdpssltpgvhngtifafdsnkpekghvFSVEVTVVKpivlgsnpsskpavswdqvdfkanttkhhfvlvpkEATIAVLKIRSNSLEAQGKFILHctqhkpklYMAVEVHKVtltsptmyidsesrsLSLILIPVIFWLINSlrlnsshlsfltshntltnqiqlsssdstnptmtssssfsitppiiefpkwgllpkketgVLNVlskhpeydgrgVVIAIFdsgvdpgaaglqvtsdgkpkvierydcggagdvdtstvvkvddtnhitglsgrklkiptswknptgdfhiglKNVYELYPKLLQERIQKERKeklwdpshRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEkkfnchdlgpaydvvvfhngdywcacvdttetgdlAACHVlgeynvtrdftsltpadqfnfSINVYEEGNVLELVGLCSSHGTHVASIAaayfpdepekngvapgaQIISLCIdgkpkvierydcggagdvdtstvvkvddtnhitglsgrklk

mfsssssnKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAgsssknkgihlrvgdqqvpkeVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVlgsnpsskpavsWDQVDFKANttkhhfvlvpkEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAaglqvtsdgkpkVIERYDCggagdvdtstvvkvddtnhitglsgrklkiptswknptGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGgagdvdtstvvkvddtnhitglsgrklk

MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLsssdstnptmtssssfsitppiiEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGdvdtstvvkvddtNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGdvdtstvvkvddtNHITGLSGRKLK

***********************ATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGS****KGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGS******AVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNT************************ITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQE*********************************************************NNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNH**********

*********ET**MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEV***TLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNT************************ITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHA*****SRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGR***

******************MSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQ****************FSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK

*****SSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSS******************IIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKH********ENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLS*****

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MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		698	2.2.26 [Sep-21-2011]
Q64514		1262	Tripeptidyl-peptidase 2 O	yes	N/A	0.408	0.225	0.566	3e-93
Q64560		1249	Tripeptidyl-peptidase 2 O	yes	N/A	0.408	0.228	0.566	2e-92
P29144		1249	Tripeptidyl-peptidase 2 O	yes	N/A	0.408	0.228	0.559	2e-92
A5PK39		1249	Tripeptidyl-peptidase 2 O	yes	N/A	0.408	0.228	0.559	8e-92
Q9UT05		1274	Tripeptidyl-peptidase 2 h	yes	N/A	0.425	0.233	0.429	1e-65
Q09541		1374	Putative subtilase-type p	yes	N/A	0.405	0.205	0.440	4e-63
Q9V6K1		1441	Tripeptidyl-peptidase 2 O	yes	N/A	0.504	0.244	0.409	3e-62
P72186		1398	Pyrolysin OS=Pyrococcus f	yes	N/A	0.289	0.144	0.244	3e-09
Q9Z2A8		1052	Membrane-bound transcript	no	N/A	0.103	0.068	0.328	0.0005
Q9WTZ3		1052	Membrane-bound transcript	no	N/A	0.103	0.068	0.328	0.0005

>sp\|Q64514\|TPP2_MOUSE Tripeptidyl-peptidase 2 OS=Mus musculus GN=Tpp2 PE=2 SV=3	Back alignment and function desciption

 Score =  343 bits (880), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/295 (56%), Positives = 219/295 (74%), Gaps = 10/295 (3%)

Query: 365 FPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYD 424
           FP  GLLPKKETG  + L ++PEYDGRGV+IA+ D+GVDPGA G+QVT+DGKPK+I+  D
Sbjct: 10  FPFHGLLPKKETGASSFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDGKPKIIDIID 69

Query: 425 CGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQER 484
             G+GDV+T+T V+  D   I GLSGR LKIP +W NP G +HIG+KN Y+ YPK L+ER
Sbjct: 70  TTGSGDVNTATEVEPKD-GEIIGLSGRVLKIPANWTNPLGKYHIGIKNGYDFYPKALKER 128

Query: 485 IQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKN--LSRENKLLKEELESMVESLNN 542
           IQKERKEK+WDP HR A AEA +  + F     D  N   S+ NKL+KEEL+S VE LN+
Sbjct: 129 IQKERKEKIWDPIHRVALAEACRKQEEF-----DIANNGSSQANKLIKEELQSQVELLNS 183

Query: 543 LEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQ 602
            EKK++  D GP YD +V+H+G+ W ACVD+ E GDL+ C VL  Y   ++++S   A+ 
Sbjct: 184 FEKKYS--DPGPVYDCLVWHDGETWRACVDSNENGDLSKCAVLRNYKEAQEYSSFGTAEM 241

Query: 603 FNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI 657
            N+S+N+Y++GN+L +V    +HGTHVASIAA +FP+EPE+NGVAPGAQI+S+ I
Sbjct: 242 LNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKI 296

Component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. May be able to complement the 26S proteasome function to some extent under conditions in which the latter is inhibited.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: 1EC: 0

>sp\|Q64560\|TPP2_RAT Tripeptidyl-peptidase 2 OS=Rattus norvegicus GN=Tpp2 PE=2 SV=3	Back alignment and function description

>sp\|P29144\|TPP2_HUMAN Tripeptidyl-peptidase 2 OS=Homo sapiens GN=TPP2 PE=1 SV=4	Back alignment and function description

>sp\|A5PK39\|TPP2_BOVIN Tripeptidyl-peptidase 2 OS=Bos taurus GN=TPP2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UT05\|TPP2_SCHPO Tripeptidyl-peptidase 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpp2 PE=1 SV=1	Back alignment and function description

>sp\|Q09541\|YQS6_CAEEL Putative subtilase-type proteinase F21H12.6 OS=Caenorhabditis elegans GN=F21H12.6 PE=3 SV=1	Back alignment and function description

>sp\|Q9V6K1\|TPP2_DROME Tripeptidyl-peptidase 2 OS=Drosophila melanogaster GN=TppII PE=1 SV=2	Back alignment and function description

>sp\|P72186\|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pls PE=1 SV=2	Back alignment and function description

>sp\|Q9Z2A8\|MBTP1_CRIGR Membrane-bound transcription factor site-1 protease OS=Cricetulus griseus GN=MBTPS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9WTZ3\|MBTP1_RAT Membrane-bound transcription factor site-1 protease OS=Rattus norvegicus GN=Mbtps1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		698
332029402		1463	Tripeptidyl-peptidase 2 [Acromyrmex echi	0.424	0.202	0.649	1e-111
242018847		1277	tripeptidyl-peptidase, putative [Pedicul	0.415	0.227	0.642	1e-109
383863009		1427	PREDICTED: tripeptidyl-peptidase 2-like	0.409	0.200	0.646	1e-108
307179857		2172	Tripeptidyl-peptidase 2 [Camponotus flor	0.424	0.136	0.642	1e-103
307202324		1264	Tripeptidyl-peptidase 2 [Harpegnathos sa	0.424	0.234	0.632	1e-103
350410535		2184	PREDICTED: tripeptidyl-peptidase 2-like	0.424	0.135	0.619	1e-103
328784575		2187	PREDICTED: tripeptidyl-peptidase 2 [Apis	0.419	0.133	0.613	1e-102
380010982		1475	PREDICTED: LOW QUALITY PROTEIN: tripepti	0.419	0.198	0.613	1e-102
270014656		1075	hypothetical protein TcasGA2_TC004702 [T	0.424	0.275	0.612	1e-102
345495666		1272	PREDICTED: tripeptidyl-peptidase 2-like	0.415	0.227	0.623	1e-100

>gi\|332029402\|gb\|EGI69356.1\| Tripeptidyl-peptidase 2 [Acromyrmex echinatior]	Back alignment and taxonomy information

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/302 (64%), Positives = 237/302 (78%), Gaps = 6/302 (1%)

Query: 365 FPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYD 424
           FP WGLLPKKETGV   L+K+PEYDGRGVVIAI DSGVDPGA G+QVTSDGKPK+IER+D
Sbjct: 9   FPVWGLLPKKETGVTQFLTKYPEYDGRGVVIAILDSGVDPGAPGMQVTSDGKPKIIERFD 68

Query: 425 CGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQER 484
           C GAGDVDTS VV+  D  +ITGL+GRKLK+P++W NP+G++HIGLKN+Y LYP  L+ER
Sbjct: 69  CSGAGDVDTSKVVQAPD-GYITGLTGRKLKVPSNWNNPSGEYHIGLKNLYSLYPNKLKER 127

Query: 485 IQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLE 544
           +  ERK++LWD  H+ A AEA + LQ F  K+     L  E +L KEE E+ VE LNN+E
Sbjct: 128 VVAERKKRLWDDGHKAAFAEASRQLQEFENKNPQLSTL--EERLQKEEFEARVEVLNNIE 185

Query: 545 KKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFN 604
           KK+ C D+GP YD VVFH+G+ W AC+DT+E G+L     LGEY++TRDFT LT  DQ N
Sbjct: 186 KKY-C-DVGPTYDCVVFHDGNIWRACIDTSEVGNLETGVFLGEYSITRDFTPLTQEDQLN 243

Query: 605 FSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI-DGKPKV 663
            SIN+++EGN LE+V LCSSHGTHVASIAAAYFPD PE NGVAPGAQIISL + DG+   
Sbjct: 244 ISINIHDEGNTLEIVSLCSSHGTHVASIAAAYFPDNPELNGVAPGAQIISLTVGDGRIGT 303

Query: 664 IE 665
           +E
Sbjct: 304 ME 305

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242018847\|ref\|XP_002429882.1\| tripeptidyl-peptidase, putative [Pediculus humanus corporis] gi\|212514916\|gb\|EEB17144.1\| tripeptidyl-peptidase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|383863009\|ref\|XP_003706975.1\| PREDICTED: tripeptidyl-peptidase 2-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307179857\|gb\|EFN68015.1\| Tripeptidyl-peptidase 2 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|307202324\|gb\|EFN81782.1\| Tripeptidyl-peptidase 2 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|350410535\|ref\|XP_003489069.1\| PREDICTED: tripeptidyl-peptidase 2-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|328784575\|ref\|XP_395521.3\| PREDICTED: tripeptidyl-peptidase 2 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380010982\|ref\|XP_003689594.1\| PREDICTED: LOW QUALITY PROTEIN: tripeptidyl-peptidase 2-like [Apis florea]	Back alignment and taxonomy information

>gi\|270014656\|gb\|EFA11104.1\| hypothetical protein TcasGA2_TC004702 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|345495666\|ref\|XP_003427548.1\| PREDICTED: tripeptidyl-peptidase 2-like isoform 2 [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		698
UNIPROTKB\|F1P257		1111	TPP2 "Uncharacterized protein"	0.411	0.258	0.535	1.2e-83
MGI\|MGI:102724		1262	Tpp2 "tripeptidyl peptidase II	0.408	0.225	0.545	1.6e-82
RGD\|621584		1249	Tpp2 "tripeptidyl peptidase II	0.408	0.228	0.545	6.5e-82
UNIPROTKB\|P29144		1249	TPP2 "Tripeptidyl-peptidase 2"	0.408	0.228	0.538	8.4e-82
UNIPROTKB\|Q5VZU9		1262	TPP2 "Tripeptidyl-peptidase 2"	0.408	0.225	0.538	9.3e-82
UNIPROTKB\|J9JHE4		1249	TPP2 "Uncharacterized protein"	0.409	0.228	0.540	1.1e-81
UNIPROTKB\|E2R9J9		1262	TPP2 "Uncharacterized protein"	0.409	0.226	0.540	1.2e-81
UNIPROTKB\|A5PK39		1249	TPP2 "Tripeptidyl-peptidase 2"	0.409	0.228	0.537	6.3e-80
UNIPROTKB\|F1N0M0		1249	TPP2 "Tripeptidyl-peptidase 2"	0.409	0.228	0.537	6.3e-80
UNIPROTKB\|F1RLQ9		1237	F1RLQ9 "Uncharacterized protei	0.378	0.213	0.540	3.8e-75

UNIPROTKB\|F1P257 TPP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 157/293 (53%), Positives = 213/293 (72%)

Query:   365 FPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYD 424
             FP  GLLPKKETG    L++ P++DGRGV++A+ D+GVDPGA G+Q+T+DGKPK+I+  D
Sbjct:    10 FPFQGLLPKKETGAAAFLARFPDFDGRGVLLAVLDTGVDPGAPGMQITTDGKPKIIDIID 69

Query:   425 CGGAGXXXXXXXXXXXXXNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQER 484
               G+G               I GLSGR LKIPT+W NP+G +HIGLKN Y++YPK L+ER
Sbjct:    70 TTGSGDVTTCTVVEAKD-GEIIGLSGRTLKIPTNWVNPSGKYHIGLKNGYDIYPKALKER 128

Query:   485 IQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLE 544
             IQKERKEKLWDP HR A AEA +  + F   H+     S+ NKL+KEEL++ VE LN+ E
Sbjct:   129 IQKERKEKLWDPLHRLALAEACRKQEEFDAAHSSP---SQVNKLIKEELQNQVELLNSFE 185

Query:   545 KKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFN 604
             KK++  D GP YD VV+++G+ W AC+DT+E+GDL +C VL  Y   +++ S   ++  N
Sbjct:   186 KKYS--DPGPVYDCVVWYDGETWRACIDTSESGDLTSCTVLRTYKEAQEYGSFGTSEMLN 243

Query:   605 FSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI 657
             +S+N+Y++GN+L +V    +HGTHVASIAA YFP+EPE+NGVAPGAQI+++ I
Sbjct:   244 YSVNIYDDGNLLSIVTSGGAHGTHVASIAAGYFPEEPERNGVAPGAQILAIKI 296

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI\|MGI:102724 Tpp2 "tripeptidyl peptidase II" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|621584 Tpp2 "tripeptidyl peptidase II" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P29144 TPP2 "Tripeptidyl-peptidase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VZU9 TPP2 "Tripeptidyl-peptidase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J9JHE4 TPP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R9J9 TPP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PK39 TPP2 "Tripeptidyl-peptidase 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N0M0 TPP2 "Tripeptidyl-peptidase 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RLQ9 F1RLQ9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29144	TPP2_HUMAN	3, ., 4, ., 1, 4, ., 1, 0	0.5593	0.4083	0.2281	yes	N/A
Q64514	TPP2_MOUSE	3, ., 4, ., 1, 4, ., 1, 0	0.5661	0.4083	0.2258	yes	N/A
A5PK39	TPP2_BOVIN	3, ., 4, ., 1, 4, ., 1, 0	0.5593	0.4083	0.2281	yes	N/A
Q64560	TPP2_RAT	3, ., 4, ., 1, 4, ., 1, 0	0.5661	0.4083	0.2281	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		698
cd04857		412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	6e-59
cd04857		412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	3e-51
cd04857		412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	2e-18
cd04857		412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	2e-16
pfam00082		277	pfam00082, Peptidase_S8, Subtilase family	1e-11
cd07489		312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	3e-07
cd07475		346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	1e-06
pfam00082		277	pfam00082, Peptidase_S8, Subtilase family	3e-05
cd07474		295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	3e-05
cd07477		229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	4e-05
cd07476		267	cd07476, Peptidases_S8_thiazoline_oxidase_subtilis	5e-05
cd07474		295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	6e-05
cd07481		264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	8e-05
cd00306		241	cd00306, Peptidases_S8_S53, Peptidase domain in th	1e-04
cd07485		273	cd07485, Peptidases_S8_Fervidolysin_like, Peptidas	1e-04
cd04077		255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	1e-04
cd07487		264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	1e-04
cd07475		346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	2e-04
cd05562		275	cd05562, Peptidases_S53_like, Peptidase domain in	2e-04
cd07478		455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	2e-04
cd04077		255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	3e-04
cd00306		241	cd00306, Peptidases_S8_S53, Peptidase domain in th	5e-04
cd07473		259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	5e-04
cd07497		311	cd07497, Peptidases_S8_14, Peptidase S8 family dom	8e-04
cd04848		267	cd04848, Peptidases_S8_Autotransporter_serine_prot	9e-04
cd04852		307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	0.001
TIGR03921		350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.001
cd07487		264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	0.002
TIGR03895		602	TIGR03895, protease_PatA, cyanobactin maturation p	0.002
cd07480		297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	0.002
cd07489		312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	0.003
cd07478		455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	0.003
cd07484		260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	0.003
cd07490		254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	0.004

>gnl\|CDD\|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

 Score =  204 bits (520), Expect = 6e-59
 Identities = 76/107 (71%), Positives = 89/107 (83%)

Query: 369 GLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGA 428
           GLLPKKETG L  L K+PEYDGRGV+IAI D+GVDPGA GLQVT+DGKPK+I+  DC G+
Sbjct: 1   GLLPKKETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGKPKIIDIIDCTGS 60

Query: 429 GDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYE 475
           GDVDTSTVV  DD   I GL+GRKLKIP SWKNP+G +H+G+KN Y+
Sbjct: 61  GDVDTSTVVTPDDGGIIGGLTGRKLKIPASWKNPSGKYHVGIKNAYD 107

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412

>gnl\|CDD\|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>gnl\|CDD\|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>gnl\|CDD\|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>gnl\|CDD\|215701 pfam00082, Peptidase_S8, Subtilase family	Back alignment and domain information

>gnl\|CDD\|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>gnl\|CDD\|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>gnl\|CDD\|215701 pfam00082, Peptidase_S8, Subtilase family	Back alignment and domain information

>gnl\|CDD\|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>gnl\|CDD\|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>gnl\|CDD\|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>gnl\|CDD\|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>gnl\|CDD\|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>gnl\|CDD\|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	Back alignment and domain information

>gnl\|CDD\|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin	Back alignment and domain information

>gnl\|CDD\|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>gnl\|CDD\|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>gnl\|CDD\|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>gnl\|CDD\|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family	Back alignment and domain information

>gnl\|CDD\|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>gnl\|CDD\|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>gnl\|CDD\|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	Back alignment and domain information

>gnl\|CDD\|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>gnl\|CDD\|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14	Back alignment and domain information

>gnl\|CDD\|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>gnl\|CDD\|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

>gnl\|CDD\|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	Back alignment and domain information

>gnl\|CDD\|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>gnl\|CDD\|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family	Back alignment and domain information

>gnl\|CDD\|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>gnl\|CDD\|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>gnl\|CDD\|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>gnl\|CDD\|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>gnl\|CDD\|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		698
KOG1114\|consensus		1304		100.0
cd04857		412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	100.0
KOG1114\|consensus		1304		100.0
cd07478		455	Peptidases_S8_CspA-like Peptidase S8 family domain	99.65
cd07483		291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	99.59
PTZ00262		639	subtilisin-like protease; Provisional	99.58
cd04852		307	Peptidases_S8_3 Peptidase S8 family domain, unchar	99.54
cd07475		346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	99.47
cd07497		311	Peptidases_S8_14 Peptidase S8 family domain, uncha	99.47
cd07479		255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	99.45
cd04842		293	Peptidases_S8_Kp43_protease Peptidase S8 family do	99.44
cd07480		297	Peptidases_S8_12 Peptidase S8 family domain, uncha	99.44
cd07481		264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	99.4
cd07496		285	Peptidases_S8_13 Peptidase S8 family domain, uncha	99.38
cd07489		312	Peptidases_S8_5 Peptidase S8 family domain, unchar	99.38
cd05562		275	Peptidases_S53_like Peptidase domain in the S53 fa	99.35
cd07485		273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	99.32
cd07490		254	Peptidases_S8_6 Peptidase S8 family domain, unchar	99.32
cd07484		260	Peptidases_S8_Thermitase_like Peptidase S8 family	99.3
cd04059		297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.3
cd07474		295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	99.29
cd07473		259	Peptidases_S8_Subtilisin_like Peptidase S8 family	99.28
cd07487		264	Peptidases_S8_1 Peptidase S8 family domain, unchar	99.28
cd07476		267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	99.26
cd07491		247	Peptidases_S8_7 Peptidase S8 family domain, unchar	99.25
cd04848		267	Peptidases_S8_Autotransporter_serine_protease_like	99.23
cd07494		298	Peptidases_S8_10 Peptidase S8 family domain, uncha	99.23
cd04077		255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	99.22
cd07477		229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	99.18
cd05562		275	Peptidases_S53_like Peptidase domain in the S53 fa	99.18
cd04843		277	Peptidases_S8_11 Peptidase S8 family domain, uncha	99.18
PTZ00262		639	subtilisin-like protease; Provisional	99.15
cd07475		346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	99.1
cd07479		255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	99.01
cd07474		295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	98.96
cd07489		312	Peptidases_S8_5 Peptidase S8 family domain, unchar	98.95
cd07493		261	Peptidases_S8_9 Peptidase S8 family domain, unchar	98.95
cd07478		455	Peptidases_S8_CspA-like Peptidase S8 family domain	98.93
cd05561		239	Peptidases_S8_4 Peptidase S8 family domain, unchar	98.92
cd07498		242	Peptidases_S8_15 Peptidase S8 family domain, uncha	98.91
cd07482		294	Peptidases_S8_Lantibiotic_specific_protease Peptid	98.89
cd05561		239	Peptidases_S8_4 Peptidase S8 family domain, unchar	98.86
cd07476		267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	98.85
cd04847		291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	98.84
PF00082		282	Peptidase_S8: Subtilase family This is family S8 i	98.83
cd07494		298	Peptidases_S8_10 Peptidase S8 family domain, uncha	98.83
KOG4266\|consensus		1033		98.79
cd07480		297	Peptidases_S8_12 Peptidase S8 family domain, uncha	98.68
cd07492		222	Peptidases_S8_8 Peptidase S8 family domain, unchar	98.59
PF00082		282	Peptidase_S8: Subtilase family This is family S8 i	98.51
cd07488		247	Peptidases_S8_2 Peptidase S8 family domain, unchar	98.3
KOG1153\|consensus		501		98.26
cd00306		241	Peptidases_S8_S53 Peptidase domain in the S8 and S	98.25
KOG4266\|consensus		1033		97.88
COG1404		508	AprE Subtilisin-like serine proteases [Posttransla	97.38
KOG3526\|consensus		629		97.26
cd04842		293	Peptidases_S8_Kp43_protease Peptidase S8 family do	97.11
KOG1153\|consensus		501		96.39
COG1404		508	AprE Subtilisin-like serine proteases [Posttransla	95.8
cd07492		222	Peptidases_S8_8 Peptidase S8 family domain, unchar	92.52
cd07493		261	Peptidases_S8_9 Peptidase S8 family domain, unchar	91.69
cd04056		361	Peptidases_S53 Peptidase domain in the S53 family.	91.42
cd04857		412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	90.71
cd07482		294	Peptidases_S8_Lantibiotic_specific_protease Peptid	88.8
cd04056		361	Peptidases_S53 Peptidase domain in the S53 family.	87.62
cd04847		291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	87.49
cd07498		242	Peptidases_S8_15 Peptidase S8 family domain, uncha	87.02

>KOG1114\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.9e-95  Score=817.71  Aligned_cols=319  Identities=53%  Similarity=0.850  Sum_probs=308.2

Q ss_pred             CcccCCccccccccccchhhhhhhCCCCCCcceEEEEeecCcCCCCCCccccCCCCceEEEEEccCCCCccCCcceEEec
Q psy14141        361 PIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVD  440 (698)
Q Consensus       361 ~~~~fp~~~l~pk~etg~~~fl~~~p~~dGrgv~IAIlDTGVDp~apglq~t~dG~~Kiid~~D~tg~GdVd~s~~~~~~  440 (698)
                      +.++||+++||||+||||..||++|||||||||+||||||||||+|||||+|+||+|||+|+|||||+|||||++.|++.
T Consensus        51 ~~e~~p~~~L~pK~Et~a~~FL~kyPeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv~dviDctGaGDVDts~~v~~~  130 (1304)
T KOG1114|consen   51 IVESFPVDALVPKKETGAYEFLKKYPEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKVKDVIDCTGAGDVDTSTEVTAA  130 (1304)
T ss_pred             ccCccccccccccchhhHHHHHHhCcCCCCCceEEEEeecCCCCCCCCceEecCCCcceeEEEecCCCCccccceEEeec
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCeeeeecCceeecCCCccCCCCceEEeeeecccccchhHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhcCCcc
Q psy14141        441 DTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAK  520 (698)
Q Consensus       441 ~~g~i~g~sGr~l~i~~~w~~p~g~~~vg~k~~~~l~p~~l~~r~~~e~k~~~wd~~~~~~~a~a~~~l~~~~~~~~~~~  520 (698)
                      +||+|+|+|||+|+||++|+||+|+||||+|.+|||||+.|++||+++||+|.||+.|+.++|+|++++.+|+.++++ +
T Consensus       131 edg~I~G~SGrtLkl~~~wknPtg~~~VG~K~~yel~pk~lr~rv~a~~k~k~wd~~h~~a~a~A~~~~~efe~~~~g-~  209 (1304)
T KOG1114|consen  131 EDGTITGLSGRTLKLSASWKNPTGKWRVGLKLAYELFPKDLRSRVQAKRKEKDWDKSHRKALAEATRKLAEFEDKNPG-A  209 (1304)
T ss_pred             cCceEecccCceEEcccccCCCCcceEeccchHHHhchHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHhhCCC-c
Confidence            779999999999999999999999999999999999999999999999999999999999999999999999999998 4


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCceeeeEEecCCceEEEEEeCCCCCCCCcccccccccccCcccccCcc
Q psy14141        521 NLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPA  600 (698)
Q Consensus       521 ~~~~~~~~~~e~l~~~~~~l~~~~k~y~~~d~gp~~d~vv~~dG~~w~a~iDt~~~gdl~~~~~l~~y~~~~~~~~~~~~  600 (698)
                      ..++++|+.||||+++||+||+++|+|+  |+||+||||||||||+||+||||+++|||....++++|+++++|+.|++.
T Consensus       210 ~~k~~~k~~rEdl~~kve~Lks~a~ky~--D~gpvyD~vvwhdgE~Wrv~iDt~~~Gdl~~~~~L~~~~~t~e~~~f~~~  287 (1304)
T KOG1114|consen  210 SLKKDNKQTREDLQSKVEFLKSLAKKYD--DPGPVYDVVVWHDGEVWRVCIDTDETGDLYLHKVLGEFNETGEYATFGSL  287 (1304)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhcC--CCCcceEEEEeecCCeEEEEecccccCccccccccccccccccccccccc
Confidence            5558899999999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeccCCceEEEeccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh--------hhHHHh---hc
Q psy14141        601 DQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP--------KVIERY---DC  669 (698)
Q Consensus       601 d~ln~a~~~y~~g~~l~iv~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~--------~~~~~i---~~  669 (698)
                      |+++|++++|++||+++||++.+.|||||||||+||+++++..+||||||||++++|||.|        .+.+||   ..
T Consensus       288 d~l~ysV~vyd~gnvlsIV~~Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e  367 (1304)
T KOG1114|consen  288 DLLSYSVNVYDDGNVLSIVTVSGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIE  367 (1304)
T ss_pred             cccceeEEEccCCceEEEEecCCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999        245555   56


Q ss_pred             cCCceeeeccccc
Q psy14141        670 GGAGDVDTSTVVK  682 (698)
Q Consensus       670 ~Ga~vin~S~g~~  682 (698)
                      +..|+||||+|=+
T Consensus       368 ~~vDiINmSyGE~  380 (1304)
T KOG1114|consen  368 HNVDIINMSYGED  380 (1304)
T ss_pred             hcCCEEEeccCcc
Confidence            8999999999944

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>KOG1114\|consensus	Back alignment and domain information

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins	Back alignment and domain information

>PTZ00262 subtilisin-like protease; Provisional	Back alignment and domain information

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14	Back alignment and domain information

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13	Back alignment and domain information

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family	Back alignment and domain information

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin	Back alignment and domain information

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases	Back alignment and domain information

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7	Back alignment and domain information

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10	Back alignment and domain information

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family	Back alignment and domain information

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11	Back alignment and domain information

>PTZ00262 subtilisin-like protease; Provisional	Back alignment and domain information

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4	Back alignment and domain information

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15	Back alignment and domain information

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4	Back alignment and domain information

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification	Back alignment and domain information

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10	Back alignment and domain information

>KOG4266\|consensus	Back alignment and domain information

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8	Back alignment and domain information

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification	Back alignment and domain information

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2	Back alignment and domain information

>KOG1153\|consensus	Back alignment and domain information

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families	Back alignment and domain information

>KOG4266\|consensus	Back alignment and domain information

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3526\|consensus	Back alignment and domain information

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>KOG1153\|consensus	Back alignment and domain information

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8	Back alignment and domain information

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>cd04056 Peptidases_S53 Peptidase domain in the S53 family	Back alignment and domain information

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>cd04056 Peptidases_S53 Peptidase domain in the S53 family	Back alignment and domain information

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		698
3lxu_X		1354	Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I		9e-58

>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354

Back alignment and structure

Iteration: 1

Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 175/303 (57%), Gaps = 12/303 (3%) Query: 365 FPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKP-KVIERY 423 FP L+PK ETGVLN L K+PEYDGR V IAIFDSGVDP A GL+ DGK KVIERY Sbjct: 10 FPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTVKVIERY 69 Query: 424 DCGGAGXXXXXXXXXXXXXNHITGLSGRKLKIPTSWK----NPTGDFHIGLKNVYELYPK 479 DC G G +I GLSG LK+ +P +GLK+ +L P Sbjct: 70 DCSGCGDVDXKKKVTPDENGNIKGLSGNSLKLSPELXALNTDPEKAVRVGLKSFSDLLPS 129 Query: 480 LLQERIQKERKEKLWDPSHRKAQAEAQKNLQNF-IQKHADAKNLSRENKLLKEELESMVE 538 ++ I + K K WD H+ A A A + + F Q +A L + K+LKE L+ +E Sbjct: 130 KVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKENLDFELE 189 Query: 539 SLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLT 598 LN+ EK + D+ +YD ++F D W VDTTE GDL +GEY+ T + ++ Sbjct: 190 XLNSYEKVYG--DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVD 247 Query: 599 PADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI- 657 D + S+NV++EGNVLE+VG S HGTHV+SIA+ + +GVAP A+I+S I Sbjct: 248 --DFLSISVNVHDEGNVLEVVGXSSPHGTHVSSIASGNHSSR-DVDGVAPNAKIVSXTIG 304 Query: 658 DGK 660 DG+ Sbjct: 305 DGR 307

PyMOL of 3lxu

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		698
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	5e-94
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	5e-65
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	8e-09
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	6e-13
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	2e-06
4aks_A		360	PATG, thiazoline oxidase/subtilisin-like protease;	1e-12
4aks_A		360	PATG, thiazoline oxidase/subtilisin-like protease;	1e-05
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	7e-12
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	3e-04
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	8e-12
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	1e-11
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	2e-04
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	2e-11
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	4e-04
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	6e-11
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	8e-04
3t41_A		471	Epidermin leader peptide processing serine protea;	8e-11
3t41_A		471	Epidermin leader peptide processing serine protea;	5e-04
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	2e-10
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	3e-04
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	2e-10
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	3e-10
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	8e-04
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	3e-10
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	5e-10
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	2e-09
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	3e-04
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	2e-09
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	9e-05
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	4e-09
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	2e-08
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	3e-05
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	1e-07
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	4e-05
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	2e-05
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	2e-04
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	4e-05
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	3e-04
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	5e-05
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	8e-05
1p8j_A		471	Furin precursor; prohormone convertase, SPC1, PACE	7e-05
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	1e-04
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	3e-04
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	1e-04
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	2e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	2e-04
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	2e-04
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	5e-04
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	3e-04
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	3e-04
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	4e-04

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354	Back alignment and structure

 Score =  317 bits (812), Expect = 5e-94
 Identities = 134/330 (40%), Positives = 187/330 (56%), Gaps = 20/330 (6%)

Query: 359 TPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKP- 417
           +  +  FP   L+PK ETGVLN L K+PEYDGR V IAIFDSGVDP A GL+   DGK  
Sbjct: 4   SGIVESFPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTV 63

Query: 418 KVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSW----KNPTGDFHIGLKNV 473
           KVIERYDC G GDVD    V  D+  +I GLSG  LK+         +P     +GLK+ 
Sbjct: 64  KVIERYDCSGCGDVDMKKKVTPDENGNIKGLSGNSLKLSPELMALNTDPEKAVRVGLKSF 123

Query: 474 YELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKH-ADAKNLSRENKLLKEE 532
            +L P  ++  I  + K K WD  H+ A A A + +  F  ++  +A  L  + K+LKE 
Sbjct: 124 SDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKEN 183

Query: 533 LESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTR 592
           L+  +E LN+ EK +   D+  +YD ++F   D W   VDTTE GDL     +GEY+ T 
Sbjct: 184 LDFELEMLNSYEKVYG--DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTH 241

Query: 593 DFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQI 652
           +  ++   D  + S+NV++EGNVLE+VG+ S HGTHV+SIA+       + +GVAP A+I
Sbjct: 242 ETRNV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNHSSR-DVDGVAPNAKI 298

Query: 653 ISLCIDGKPKVIERYDCGGAGDVDTSTVVK 682
           +S+       +    D         + +V+
Sbjct: 299 VSM------TIG---DGRLGSMETGTALVR 319

PyMOL of 3lxu

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434	Back alignment and structure

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360	Back alignment and structure

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276	Back alignment and structure

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		698
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	100.0
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	100.0
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	99.73
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.72
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	99.68
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	99.53
4h6w_A		306	N-terminal cyanobactin protease; hydrolase; 2.45A	99.52
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	99.52
3zxy_A		282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	99.5
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	99.49
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	99.48
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.48
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	99.47
3zxy_A		282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	99.47
1p8j_A		471	Furin precursor; prohormone convertase, SPC1, PACE	99.47
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	99.46
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	99.46
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	99.44
4h6x_A		357	Thiazoline oxidase/subtilisin-like protease; hydro	99.44
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	99.44
3hjr_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.43
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	99.43
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.42
4h6x_A		357	Thiazoline oxidase/subtilisin-like protease; hydro	99.42
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	99.41
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	99.41
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	99.4
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	99.4
2oxa_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.4
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	99.39
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	99.39
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	99.38
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	99.38
4h6w_A		306	N-terminal cyanobactin protease; hydrolase; 2.45A	99.38
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	99.37
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	99.37
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	99.36
2id4_A		503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.36
3t41_A		471	Epidermin leader peptide processing serine protea;	99.33
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	99.33
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	99.32
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	99.32
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	99.3
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	99.27
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	99.26
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	99.25
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	99.24
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	99.23
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	99.22
3t41_A		471	Epidermin leader peptide processing serine protea;	99.2
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	99.19
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	99.19
1p8j_A		471	Furin precursor; prohormone convertase, SPC1, PACE	99.16
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	99.16
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	99.15
2id4_A		503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.14
2oxa_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.1
3hjr_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.09
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	99.08
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.08
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	99.07
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	98.68
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	98.67
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	98.6
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	98.54
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	98.43
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	98.41
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	98.33
1ga6_A		372	Serine-carboxyl proteinase; serine-carboxyl protei	97.6
1t1e_A		552	Kumamolisin; proenzyme, prosubtilase, activation m	97.47
1t1e_A		552	Kumamolisin; proenzyme, prosubtilase, activation m	88.16

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

Probab=100.00  E-value=2.9e-79  Score=735.79  Aligned_cols=319  Identities=42%  Similarity=0.685  Sum_probs=269.7

Q ss_pred             CcccCCccccccccccchhhhhhhCCCCCCcceEEEEeecCcCCCCCCccccCCCCc-eEEEEEccCCCCccCCcceEEe
Q psy14141        361 PIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKP-KVIERYDCGGAGDVDTSTVVKV  439 (698)
Q Consensus       361 ~~~~fp~~~l~pk~etg~~~fl~~~p~~dGrgv~IAIlDTGVDp~apglq~t~dG~~-Kiid~~D~tg~GdVd~s~~~~~  439 (698)
                      +.++||+++||||+||||.+||++||+||||||+||||||||||+|||||+|+||+| ||||+|||||||||||+++|++
T Consensus         6 ~~~~fp~~~llpK~et~~~~fl~~~P~ydGrgv~iai~DtGVDP~a~glq~t~dG~~~Kiid~~D~tG~GDVdts~v~~~   85 (1354)
T 3lxu_X            6 IVESFPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTVKVIERYDCSGCGDVDMKKKVTP   85 (1354)
T ss_dssp             ------------CCTTTTCSSGGGSTTCSSTTCEEEEEESCCCTTSTTSSCCTTSSSCSCCEEEETTSTTEEETTEECCC
T ss_pred             ccCCCchhccCCHhHhhHHHHHHhCCCCCCCccEEEEEeCCCCCCCCcceecCCCCcceeEEEEeCCCCCccccceEEec
Confidence            566799999999999999999999999999999999999999999999999999999 9999999999999999999998


Q ss_pred             cCCCeeeeecCceeecCCCc----cCCCCceEEeeeecccccchhHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhh
Q psy14141        440 DDTNHITGLSGRKLKIPTSW----KNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK  515 (698)
Q Consensus       440 ~~~g~i~g~sGr~l~i~~~w----~~p~g~~~vg~k~~~~l~p~~l~~r~~~e~k~~~wd~~~~~~~a~a~~~l~~~~~~  515 (698)
                      .+||+|+|++||+|+||++|    +||+|+||||+|++|+|||+.|++||++|||++.||+.|+.++|+|++++.+|+.+
T Consensus        86 ~~~g~i~glsgr~l~~~~~w~~~~~~p~g~~~vG~k~~~~l~p~~l~~Rl~~erk~~~Wd~~~~~~~a~a~~~~~~~~~~  165 (1354)
T 3lxu_X           86 DENGNIKGLSGNSLKLSPELMALNTDPEKAVRVGLKSFSDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQ  165 (1354)
T ss_dssp             TTCC-----------------------CCSCCCCCSCCSSCTTSCCEEEEEECSSSSCTTCGGGCCCSSSTTTTCCCCCC
T ss_pred             CCCCcEecccCCeEecCHHHhhcccCCCCcEEEEEeeccccCcHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhcc
Confidence            77799999999999999999    89999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcc-cchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCceeeeEEecCCceEEEEEeCCCCCCCCcccccccccccCcc
Q psy14141        516 HADAK-NLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDF  594 (698)
Q Consensus       516 ~~~~~-~~~~~~~~~~e~l~~~~~~l~~~~k~y~~~d~gp~~d~vv~~dG~~w~a~iDt~~~gdl~~~~~l~~y~~~~~~  594 (698)
                      ++.++ ...+++|++||||++|+++|+++++.|+  |+||+|||+||++|+.|+|+|||+.++||.+...+..|+..++|
T Consensus       166 ~p~~~~~~~~~~k~~keelq~~~e~L~~~~k~y~--d~gpv~D~vVw~dG~V~VAVIDTG~d~DL~d~~~l~~Y~~~~dy  243 (1354)
T 3lxu_X          166 NPGEASKLPWDKKILKENLDFELEMLNSYEKVYG--DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHET  243 (1354)
T ss_dssp             CCSCSSSCCTTTHHHHHHHHHHHHHHHHHHTTGG--GCCCEEEEEEECCSSSCEEEECSSSSCCSSCSEEEECTTTTCCC
T ss_pred             CCCcccccchhHHHHHHHHHHHHHHHHHHHHhcc--CCCccceeEEECCCCEEEEEEeCCCCCCcccccccccccccccc
Confidence            98853 3456789999999999999999999999  99999999999999999999999999999999999999999999


Q ss_pred             cccCcccccccceeeccCCceEEEeccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh--------hhHHH
Q psy14141        595 TSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP--------KVIER  666 (698)
Q Consensus       595 ~~~~~~d~ln~a~~~y~~g~~l~iv~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~--------~~~~~  666 (698)
                      +.|  ++.+++..+.+++++.+.++.|++||||||||||||.. ++.++.||||+|+|+++|+++.+        .++++
T Consensus       244 g~F--~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~-N~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~A  320 (1354)
T 3lxu_X          244 RNV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH-SSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRA  320 (1354)
T ss_dssp             CEE--SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC-SSSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHH
T ss_pred             ccc--ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC-CCCCceeecCCCEEEEEEeccCCCCcccChHHHHHH
Confidence            999  78999999999999999999999999999999999998 77899999999999999997653        12222


Q ss_pred             ---hhc-----cCCceeeecccccCC
Q psy14141        667 ---YDC-----GGAGDVDTSTVVKVD  684 (698)
Q Consensus       667 ---i~~-----~Ga~vin~S~g~~~~  684 (698)
                         +.+     +|++|||||||...+
T Consensus       321 I~~Aid~a~~~~gadVINmS~G~~~~  346 (1354)
T 3lxu_X          321 MTKVMELCRDGRRIDVINMSYGEHAN  346 (1354)
T ss_dssp             HHHHHHHHHTTCCCCEEEECCCCCCS
T ss_pred             HHHHHHHHhhcCCceEEEcCCccCCC
Confidence               233     699999999998653

PyMOL of 3lxu

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E	Back alignment and structure

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1	Back alignment and structure

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...	Back alignment and structure

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A	Back alignment and structure

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}	Back alignment and structure

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A	Back alignment and structure

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*	Back alignment and structure

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E	Back alignment and structure

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}	Back alignment and structure

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*	Back alignment and structure

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}	Back alignment and structure

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*	Back alignment and structure

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A	Back alignment and structure

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		698
d1v6ca_		435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	5e-13
d1to2e_		281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	1e-11
d1wmda2		318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	1e-10
d1wmda2		318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	2e-06
d1r0re_		274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	1e-08
d1r6va_		671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	2e-08
d1gcia_		269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	3e-08
d1dbia_		280	c.41.1.1 (A:) Thermostable serine protease {Bacill	5e-08
d1thma_		279	c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar	6e-08
d2ixta1		309	c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus	2e-07
d1p8ja2		334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	2e-05
d2id4a2		339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	3e-05
d2pwaa1		279	c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach	0.002

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score = 69.3 bits (168), Expect = 5e-13
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 4   SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSV-E 62
           S+  N++ ++ NGTSM+ PH +G   L+ S   +     S   +R AL  TA  +     
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPE----CSASQVRAALNATADDLSVAGR 410

Query: 63  PYAQGFGLLQVEKALEWLEK 82
               G+G++    A  +L++
Sbjct: 411 DNQTGYGMINAVAAKAYLDE 430

PyMOL of d1v6ca_

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318	Back information, alignment and structure

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274	Back information, alignment and structure

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269	Back information, alignment and structure

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280	Back information, alignment and structure

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279	Back information, alignment and structure

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309	Back information, alignment and structure

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334	Back information, alignment and structure

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339	Back information, alignment and structure

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		698
d1v6ca_		435	Alkaline serine protease Apa1 {Pseudoalteromonas s	99.53
d1dbia_		280	Thermostable serine protease {Bacillus sp., AK.1 [	99.45
d1v6ca_		435	Alkaline serine protease Apa1 {Pseudoalteromonas s	99.43
d1thma_		279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	99.38
d1wmda2		318	Alkaline serine protease kp-43, N-terminal domain	99.38
d1r6va_		671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	99.37
d1r0re_		274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	99.31
d1to2e_		281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	99.27
d1wmda2		318	Alkaline serine protease kp-43, N-terminal domain	99.23
d1p8ja2		334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.22
d1r6va_		671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	99.21
d1thma_		279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	99.19
d2id4a2		339	Kexin, N-terminal domain {Baker's yeast (Saccharom	99.19
d2ixta1		309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.18
d1to2e_		281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	99.17
d1r0re_		274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	99.17
d1p8ja2		334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.15
d1gcia_		269	Subtilisin {Bacillus lentus [TaxId: 1467]}	99.14
d1dbia_		280	Thermostable serine protease {Bacillus sp., AK.1 [	99.1
d1gcia_		269	Subtilisin {Bacillus lentus [TaxId: 1467]}	99.08
d2ixta1		309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.08
d2pwaa1		279	Proteinase K {Fungus (Tritirachium album), strain	99.04
d2id4a2		339	Kexin, N-terminal domain {Baker's yeast (Saccharom	98.99
d1t1ga_		357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	98.66
d1t1ga_		357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	98.66
d2pwaa1		279	Proteinase K {Fungus (Tritirachium album), strain	98.64
d1ga6a_		369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	98.61
d1ga6a_		369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	97.94

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=99.53  E-value=2.5e-15  Score=161.88  Aligned_cols=76  Identities=26%  Similarity=0.423  Sum_probs=67.7

Q ss_pred             CCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC-CCCCccccccccHHHHHHHHHHh
Q psy14141          5 SSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS-VEPYAQGFGLLQVEKALEWLEKY   83 (698)
Q Consensus         5 t~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~-~~~~~~G~Gli~v~~A~~~l~~~   83 (698)
                      +...++|..|+|||||||||||++|||+    |.+|.|+|.+||++|++||+++.. .+++.||+|+||+.+|+++|...
T Consensus       356 ~~~~~~y~~~sGTSMAaP~VAG~aALl~----q~~P~~s~~~vk~~L~~TA~~~~~~~~~~~~G~G~vn~~~A~~~l~~~  431 (435)
T d1v6ca_         356 NQGNQDYEYYNGTSMATPHVSGVATLVW----SYHPECSASQVRAALNATADDLSVAGRDNQTGYGMINAVAAKAYLDES  431 (435)
T ss_dssp             EEEEESEEEECSHHHHHHHHHHHHHHHH----HHCTTSCHHHHHHHHHHHSBCCSSSSCBTTTBTCBCCHHHHHHHHHHC
T ss_pred             CCCCCCeeEEccHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHhhCcccCCCCCCCCcccceecHHHHHHHHHhc
Confidence            3445679999999999999999999995    778999999999999999999865 57899999999999999999765


Q ss_pred             c
Q psy14141         84 H   84 (698)
Q Consensus        84 ~   84 (698)
                      +
T Consensus       432 ~  432 (435)
T d1v6ca_         432 C  432 (435)
T ss_dssp             T
T ss_pred             C
Confidence            3

PyMOL of d1v6ca_

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}	Back information, alignment and structure

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}	Back information, alignment and structure

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}	Back information, alignment and structure

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}	Back information, alignment and structure

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}	Back information, alignment and structure

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}	Back information, alignment and structure

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}	Back information, alignment and structure

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}	Back information, alignment and structure

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}	Back information, alignment and structure

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}	Back information, alignment and structure

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}	Back information, alignment and structure

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}	Back information, alignment and structure

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}	Back information, alignment and structure

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}	Back information, alignment and structure

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}	Back information, alignment and structure

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}	Back information, alignment and structure

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}	Back information, alignment and structure