Psyllid ID: psy14164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MLNLNLGGDAVTRKQPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHccHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHccccc
Coil and Loop (DISEMBL)
mlnlnlggdavtrkqpirledsqaqpnlaieyapnqdiparqprqpsnlQDLLRYAVEAgsrsraqeapninraasmnEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIgaldnlsdyiCSIDYANDflkmgglpvlqpllegsdpeLRWRAAETVADIvqnnpfsqnfiIQTDFLNLLLTSIehdsnttvQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIkdspeaqslcrleplnlKFKLNFIkekhagnevYHKELEYVNSVLTEvfeedspeefdhqdr
Flexible Loop (DISEMBL)
mlnlnlggdavtrkqpirledsqaqpNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGsrsraqeapninraasmNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEvfeedspeefdhqdr
Low Complexity Region (SEG)
MLNLNLGGDAVTRKQPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR
Disordered region (IsUnstruct)
*********************************************************************************RGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF*************
Disordered Region (DISOPRED)
***************************************************LLRY****************************FLLDALNSMM****AELEKIIKTLK***DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE*****TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLN************HKELEYVNSVLTEVF*************
Disordered Region (DISEMBL)
MLNLNLGGDAVTRKQPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF*************
Disordered Region (DISPRO)
************************************D***RQPRQPSNLQDLLRYAVEAG****************MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEED**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNLNLGGDAVTRKQPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q99P31	357	Hsp70-binding protein 1 O	yes	N/A	0.839	0.848	0.334	2e-34
Q6IMX7	357	Hsp70-binding protein 1 O	yes	N/A	0.839	0.848	0.331	5e-33
Q4R588	364	Hsp70-binding protein 1 O	N/A	N/A	0.844	0.837	0.330	8e-33
Q9NZL4	362	Hsp70-binding protein 1 O	yes	N/A	0.842	0.839	0.331	3e-32
O43030	287	Hsp70 nucleotide exchange	yes	N/A	0.418	0.526	0.303	9e-11
Q2U9E2	216	Hsp70 nucleotide exchange	yes	N/A	0.487	0.814	0.286	8e-09
Q1E3S4	212	Hsp70 nucleotide exchange	N/A	N/A	0.282	0.481	0.351	4e-08
Q4WDH3	216	Hsp70 nucleotide exchange	yes	N/A	0.484	0.810	0.272	9e-08
A1DLW4	216	Hsp70 nucleotide exchange	N/A	N/A	0.493	0.824	0.271	1e-07
Q32KV6	462	Nucleotide exchange facto	no	N/A	0.387	0.303	0.297	1e-07

>sp|Q99P31|HPBP1_MOUSE Hsp70-binding protein 1 OS=Mus musculus GN=Hspbp1 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 173/332 (52%), Gaps = 29/332 (8%)

Query: 43  PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
           PR P NLQ LL+ A+ AGS+      P+      M+E  R +L +A+++       E+E+
Sbjct: 37  PRPPRNLQGLLQMAITAGSQE-----PDPP-PEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query: 103 IIKTLK----------------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL 146
           +   L+                 +Q +++   GAL+ L+D   ++D A DF ++ G+ +L
Sbjct: 91  MKNCLRVLSQATPAMAGEAELATDQQERE---GALELLADLCENMDNAADFCQLSGMHLL 147

Query: 147 -QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 205
               LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ DS  TV+VK+L
Sbjct: 148 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKAL 207

Query: 206 YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 265
           +A+SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L 
Sbjct: 208 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 267

Query: 266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE 325
           SMGMV+Q+  L+  E    +  +EH+L AL SL+ D P+    CR   L L+  L    +
Sbjct: 268 SMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ 324

Query: 326 KHAGNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
                E Y +ELE+   +L   F   + +  D
Sbjct: 325 LLQQREEYQEELEFCEKLLQTCFSSPTDDSMD 356

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.
Mus musculus (taxid: 10090)

>sp|Q6IMX7|HPBP1_RAT Hsp70-binding protein 1 OS=Rattus norvegicus GN=Hspbp1 PE=2 SV=1

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 171/332 (51%), Gaps = 29/332 (8%)

Query: 43  PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
           PR P NLQ LL+ A+ AGS               M+E  R +L +A+++       E+E+
Sbjct: 37  PRLPRNLQGLLQMAITAGSEE------PDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query: 103 IIKTLK----------------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL 146
           +   L+                 +Q +++   GAL+ L+D   ++D A DF ++ G+ +L
Sbjct: 91  MKNCLRVLSQATPPTAGEAELATDQQERE---GALELLADLCENMDNAADFCQLSGMHLL 147

Query: 147 -QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 205
               LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ DS  TV+VK+L
Sbjct: 148 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKAL 207

Query: 206 YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 265
           +A+SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L 
Sbjct: 208 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 267

Query: 266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE 325
           SMGMV+Q+  L+  E    +  +EH+L AL SL+ D P+    CR   L L+  L    +
Sbjct: 268 SMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ 324

Query: 326 KHAGNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
               +E Y +ELE+   +L   F   + +  D
Sbjct: 325 LLQQHEEYQEELEFCEKLLQTCFSSPTDDSMD 356

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q4R588|HPBP1_MACFA Hsp70-binding protein 1 OS=Macaca fascicularis GN=HSPBP1 PE=2 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 25/330 (7%)

Query: 43  PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
           PR P NLQ LL+ A+ AGS               M+E  R +L +A+++       E+E+
Sbjct: 44  PRPPRNLQGLLQMAITAGSEE------PDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQ 97

Query: 103 IIKTLK--------------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL-Q 147
           +   L+              +  DQ++   GAL+ L+D   ++D A DF ++ G+ +L  
Sbjct: 98  MKSCLRVLSQPMPPTAGEAEQAADQQER-EGALELLADLCENMDNAADFCQLSGMHLLVG 156

Query: 148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 207
             LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A
Sbjct: 157 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFA 216

Query: 208 VSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
           +SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + +  L SM
Sbjct: 217 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHRGTLCSM 276

Query: 268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH 327
           GMV+Q+  L+  E    +  +EH+L AL SL+ D P+    CR   L L+  L    +  
Sbjct: 277 GMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 333

Query: 328 AGNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
             +E Y +ELE+   +L   F   + +  D
Sbjct: 334 QQHEEYQEELEFCEKLLQTCFSSPTDDSMD 363

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Macaca fascicularis (taxid: 9541)

>sp|Q9NZL4|HPBP1_HUMAN Hsp70-binding protein 1 OS=Homo sapiens GN=HSPBP1 PE=1 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 25/329 (7%)

Query: 44  RQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKI 103
           R P NLQ LL+ A+ AGS               M+E  R +L +A+++       E+E++
Sbjct: 43  RPPRNLQGLLQMAITAGSEE------PDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQM 96

Query: 104 IKTLK--------------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL-QP 148
              L+              +  DQ++   GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct: 97  KSCLRVLSQPMPPTAGEAEQAADQQER-EGALELLADLCENMDNAADFCQLSGMHLLVGR 155

Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
            LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A+
Sbjct: 156 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 215

Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
           SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMG
Sbjct: 216 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 275

Query: 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
           MV+Q+  L+  E    +  +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct: 276 MVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 332

Query: 329 GNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
            +E Y +ELE+   +L   F   + +  D
Sbjct: 333 QHEEYQEELEFCEKLLQTCFSSPADDSMD 361

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of immature CFTR.

Homo sapiens (taxid: 9606)

>sp|O43030|FES1_SCHPO Hsp70 nucleotide exchange factor fes1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fes1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN 171
           DQK+I   A DNL   +  ID AN+ + +   P L   LE  +  LR  AA T+A  VQN
Sbjct: 59  DQKEI---AFDNLEMLVEHIDNANNLVPLQLWPRLLKQLESPESTLRRLAAWTIATAVQN 115

Query: 172 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK-RDGFSV 230
           NP SQ  +I+ D L +L  +++ + +   + K LYA++  ++ NE  +    K  + + +
Sbjct: 116 NPKSQQALIENDGLKILFGALKKEDSDETKNKVLYAITSELKLNEAGIALLDKIPNSWEM 175

Query: 231 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 265
           L+  ++ K   +  +  F    L    ++ KQ++L
Sbjct: 176 LIEILELKHSVMTKRVIFFFYALLIQEDKSKQIIL 210

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2U9E2|FES1_ASPOR Hsp70 nucleotide exchange factor fes1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=fes1 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 47  SNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEAN---RGFLLDALNSMMVNVGAELEKI 103
           +N+ +LL+++++  S ++  +APN    AS N A+   RG   + L+++    G     +
Sbjct: 3   ANMNNLLKWSIQ-NSTTQQSDAPN----ASNNTADSSARGLTPEMLSALFG--GPSDADL 55

Query: 104 IKTLKE--NQDQKDI--CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRW 159
           +K   E  + D+ D+   + A DN    I SID AN+   +G    L  LL+  + E+R 
Sbjct: 56  MKAAMEALHSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLQHEEAEMRR 115

Query: 160 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL 219
            AA  +   VQNN  +Q+ ++  + +  L+T    DSN   + K+++A+S  VR  +  +
Sbjct: 116 MAAWCIGTAVQNNEKAQDKLVVFNAVPKLVTMSTTDSNPATRKKAVFALSSAVRNYQPAM 175

Query: 220 KEFIKR--DGFS 229
            E +K   +G+S
Sbjct: 176 DELVKHLPEGYS 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 120 ALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQ 176
           A DN    I ++D AN+   MG L +  PL+E    ++P++R  AA  +   VQNN  +Q
Sbjct: 75  AFDNFEQLIENLDNANN---MGVLGLWTPLVEALSDAEPQMRKMAAWCIGTAVQNNEMAQ 131

Query: 177 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK 224
           N ++    +  LL+  + D +TTV+ K++YA+S  VR ++  L E  K
Sbjct: 132 NKLLDFKAVPKLLSLAKTDPDTTVRRKAIYALSSAVRNHQPSLDELQK 179

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 16/191 (8%)

Query: 48  NLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNV---GAELEKII 104
           N+ +LL++++E  + +R     N    A  + +N       LN  M++    G     ++
Sbjct: 4   NMNNLLKWSIENSTSARQAGNSNGTGPAPASRSN-------LNPEMLSALFGGPSDADLM 56

Query: 105 KTLKE--NQDQKDI--CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWR 160
           K   E  + D+ D+   + A DN    I SID AN+   +G    L  LL+  + E+R  
Sbjct: 57  KAAMEALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRM 116

Query: 161 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220
           AA  +   VQNN  +Q+ +I  + L  L+     D     + K++YA+S  VR  +  + 
Sbjct: 117 AAWCIGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMD 176

Query: 221 EFIKR--DGFS 229
           EF+K   +G++
Sbjct: 177 EFVKHLPEGYT 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 10/188 (5%)

Query: 48  NLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTL 107
           N+ +LL++++E  + +R  +A + N AA    +      + L+++    G     ++K  
Sbjct: 4   NMNNLLKWSIENSTSAR--QAADSNDAAPAPTSRSNLNPEMLSALFG--GPSDADLMKAA 59

Query: 108 KE--NQDQKDI--CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAE 163
            E  + D+ D+   + A DN    I SID AN+   +G    L  LL+  + E+R  AA 
Sbjct: 60  MEALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAW 119

Query: 164 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI 223
            +   VQNN  +Q+ +I  + L  L+     D     + K++YA+S  VR  +  + EF+
Sbjct: 120 CIGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEFV 179

Query: 224 KR--DGFS 229
           K   +G++
Sbjct: 180 KHLPEGYT 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 118 IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN 177
           I AL +L  Y+  +D A D L  GGL V+   L  ++P ++  AA  +     +NP  Q 
Sbjct: 204 IAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQV 263

Query: 178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237
             I+   L  LL  +  +   T + K+L+A+  L+R      ++F+K  G  VL   +Q 
Sbjct: 264 EAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQE 323

Query: 238 KK-EKLVIKSCFLIACLCTDN 257
           K  E L ++   L+  L T+ 
Sbjct: 324 KGMEVLAVRVVTLLYDLVTEK 344

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
242015041	355	Hsp70-binding protein, putative [Pedicul	0.867	0.881	0.400	1e-50
156537283	362	PREDICTED: hsp70-binding protein 1-like	0.861	0.859	0.394	3e-48
307214304	325	Hsp70-binding protein 1 [Harpegnathos sa	0.761	0.846	0.404	6e-46
307189402	361	Hsp70-binding protein 1 [Camponotus flor	0.783	0.783	0.362	1e-44
66554764	378	PREDICTED: hsp70-binding protein 1-like	0.775	0.740	0.384	1e-44
380014402	378	PREDICTED: hsp70-binding protein 1-like	0.775	0.740	0.380	2e-44
383849635	378	PREDICTED: hsp70-binding protein 1-like	0.781	0.746	0.380	3e-44
91090129	336	PREDICTED: similar to AGAP008392-PA [Tri	0.850	0.913	0.343	2e-43
158296710	315	AGAP008392-PA [Anopheles gambiae str. PE	0.825	0.946	0.351	3e-43
189217649	325	HSPA (heat shock 70kDa) binding protein,	0.831	0.923	0.378	1e-42

>gi|242015041|ref|XP_002428187.1| Hsp70-binding protein, putative [Pediculus humanus corporis] gi|212512730|gb|EEB15449.1| Hsp70-binding protein, putative [Pediculus humanus corporis]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/327 (40%), Positives = 196/327 (59%), Gaps = 14/327 (4%)

Query: 35  NQDIP-ARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM 93
           +++IP A QPR P NLQDLLRY+ EA +    +   N N   +++E +R FL +AL SM 
Sbjct: 24  SEEIPIASQPRPPRNLQDLLRYSTEAANLPGHES--NENCLQTLSEEDRKFLENALKSMT 81

Query: 94  VNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
           +++  EL K IK L+     E          ALD++ DY+ +ID ANDF K+GG  + +P
Sbjct: 82  LDIVEELLKHIKILQSANLIEGSVDSTKFEDALDSILDYVDNIDVANDFHKIGGFCIFKP 141

Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
            L+     +RWR AE +A + QNNP+ QN ++++  +  LL  I+ D +  V+VK+LYA+
Sbjct: 142 CLQSIHSSIRWRGAELIAQLCQNNPYCQNKVLESKLVPTLLQMIDSDIDDLVRVKALYAI 201

Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
           SCL R +EE LKEFI  DGFSVLLR +Q+  +KL IKS FL+  +C     VK  L++MG
Sbjct: 202 SCLARGSEEGLKEFIITDGFSVLLRALQTDVQKLNIKSAFLLTSICQWKPHVKDDLVNMG 261

Query: 269 MVEQMCVLIDI-----EDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFI 323
            VEQ+   I +     E+     + EHLL+AL ++++D+  AQ + R   L  K  L+FI
Sbjct: 262 YVEQLISQIAVFLQKYEEGHPPSL-EHLLNALLAIVEDNSMAQEISRTPELRFKSLLDFI 320

Query: 324 KEKHAGNEVYHKELEYVNSVLTEVFEE 350
            +     E +++E EY + + + +F E
Sbjct: 321 IKNSENKEEFNEENEYASKLSSIIFGE 347

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537283|ref|XP_001605940.1| PREDICTED: hsp70-binding protein 1-like [Nasonia vitripennis]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 189/335 (56%), Gaps = 24/335 (7%)

Query: 3   NLNLGGD-AVTRKQPIRLEDSQAQPNLA-IEYAPNQDIPARQPRQPSNLQDLLRYAVEAG 60
           N N G D A +  +P+ +E  +   N   +E  PNQ      PRQP NLQ LLR+A EA 
Sbjct: 9   NQNTGQDSAGSNARPLSIEAPRTNQNPNNVEILPNQ------PRQPRNLQGLLRFAAEA- 61

Query: 61  SRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKD 115
             ++A++AP+ +R   M+E  + FL +AL+SM VNV  EL+K +K L        +D   
Sbjct: 62  --TKAEDAPSDSRFCPMDEERKNFLNEALSSMAVNVIEELQKDVKLLHNVMDVRVEDDPS 119

Query: 116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 175
               ALD ++D   S+D ANDF K+GG  V  P L      +RWR A  +A++ QNNPF 
Sbjct: 120 QYEAALDRIADLADSMDVANDFYKIGGFSVFGPCLNSPHSGIRWRVANVIAELTQNNPFC 179

Query: 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI 235
           Q  +++  F+ +LL+ ++ D +   ++K+LYAVSC+VR +   L+     DG+SVL+R I
Sbjct: 180 QEKVLEAGFMPILLSMVDTDPSDMARIKALYAVSCIVRGHALALRYMEINDGYSVLMRAI 239

Query: 236 QSKKEKLVIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 293
           QS  EKL IKS FL++ LC  +  N +K  L+ MG++EQ   L+ +  +L  E  E LLS
Sbjct: 240 QSPVEKLQIKSAFLLSALCNKDKGNDLKLTLIKMGLIEQAAGLLAM-GSLLPETREQLLS 298

Query: 294 ALASLIKDSP-EAQSLCRLEPLNLKFKLNFIKEKH 327
            L  L  D+   A   CR   L LK  L    E+H
Sbjct: 299 VLNGLTNDNYFPALKECRRPELCLKQTL----ERH 329

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214304|gb|EFN89391.1| Hsp70-binding protein 1 [Harpegnathos saltator]

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 177/289 (61%), Gaps = 14/289 (4%)

Query: 42  QPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELE 101
           QPRQP+NLQ LL+YA++    ++ ++  N ++   ++E  + FL +AL+S+ VNV  EL+
Sbjct: 1   QPRQPTNLQGLLKYAIDV---AQFEDIENKSQIYPLDEEKKTFLNNALSSLTVNVIEELQ 57

Query: 102 KIIKTLK-----ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPE 156
           + IK L      +      I   AL+ +S +I +ID ANDF K+GG  VLQ  L+ S   
Sbjct: 58  EDIKILSGIVNLKTDGDSSIYENALNRISHHIDNIDIANDFYKIGGFSVLQLCLDCSHSN 117

Query: 157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216
           +RWR A+ +A++ QNNPF Q  I+ T    +LL+ ++ D +   +VK+LYA+SC+VREN 
Sbjct: 118 IRWRIADIIAELAQNNPFCQEKILDTGLFPILLSMVDTDVSEHTKVKALYAISCIVRENS 177

Query: 217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT--DNNQVKQVLLSMGMVEQMC 274
             LK     DG+SVLLR +QS  EKL IKS FL++ LC+  D++ +K +L+ MG +EQ  
Sbjct: 178 TSLKYMEINDGYSVLLRALQSPVEKLQIKSAFLLSNLCSKEDSSDIKHILIKMGFIEQAV 237

Query: 275 VLIDIEDALDTEMNEHLLSALASLIKDS--PEAQSLCRLEPLNLKFKLN 321
            L+ +   L  E+ E LL  L S++ D+  P  + L R   L LK+ L+
Sbjct: 238 GLL-LRCNLQLEIREQLLRMLYSMVNDNFLPALEEL-RRPQLRLKYILD 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189402|gb|EFN73812.1| Hsp70-binding protein 1 [Camponotus floridanus]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 178/301 (59%), Gaps = 18/301 (5%)

Query: 8   GDAVTRKQPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQE 67
           G + +  +P+ +E      N++      Q +P  QPRQP+NLQ LL+YA++A   +++++
Sbjct: 16  GQSNSSTRPLSIEGPSTSNNVS------QPLP-NQPRQPTNLQGLLKYAMDA---AQSED 65

Query: 68  APNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALD 122
             N +    ++E  + FL +AL+S+ VNV  E++K ++TL         D       AL+
Sbjct: 66  TENKSPIYPLDEEKKTFLNEALSSLTVNVIEEMQKAVQTLSNVGNLRADDDSSEYENALE 125

Query: 123 NLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182
            ++D + +ID ANDF K+GG  + QP L  S   +RWR A+ +A++ QNNPF Q+ +++ 
Sbjct: 126 RMADLVDNIDIANDFYKIGGFAIFQPCLNSSHSNIRWRIADIIAELAQNNPFCQDKLLEA 185

Query: 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKL 242
               +LL+ I+ D +   ++K+LYAVSC+VR +   LK     DG+SVLLR +QS  EKL
Sbjct: 186 GVFPVLLSIIDTDPSEQARIKALYAVSCIVRGHPASLKYMDTNDGYSVLLRAMQSPVEKL 245

Query: 243 VIKSCFLIACLCT--DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300
            IKS FL++ LC+  D++ +K  L+ MG +EQ   L+   + L + + E LL  L  ++ 
Sbjct: 246 QIKSAFLLSSLCSKDDSSDIKCTLVKMGFIEQAAGLLGRMN-LQSTVREQLLRVLNGMVN 304

Query: 301 D 301
           D
Sbjct: 305 D 305

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66554764|ref|XP_393027.2| PREDICTED: hsp70-binding protein 1-like [Apis mellifera]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 173/302 (57%), Gaps = 22/302 (7%)

Query: 12  TRKQPIRLEDSQAQPNL---AIEYAPNQDIPARQPRQPSNLQDLLRYAVEA-GSRSRAQE 67
           +R +P+ +E   +  N     +E  PNQ      PRQP+NLQ LLR+A+EA  S++   +
Sbjct: 33  SRARPLSIEGPSSMNNTEPQVLEPLPNQ------PRQPTNLQGLLRFAMEATNSQNVTSD 86

Query: 68  APNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALD 122
            P       M+E  + FL   L+S+  N+  EL+K IK L         D       AL+
Sbjct: 87  IP----FQPMDEERQEFLKQTLSSLSCNIIEELQKSIKVLSNVIDLRPDDDTSQHESALE 142

Query: 123 NLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182
            ++D++ +ID ANDF K+GG  +  P L      +RWRAA+ +A++ QNNPF Q   ++T
Sbjct: 143 KIADFVDNIDIANDFYKIGGFSIFGPCLNSPHSSIRWRAADVIAELAQNNPFCQERFLET 202

Query: 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKL 242
               +LL  I+ D   TV++K+LYAVSC+VRE+   LK     DG+S+LLR +QS  +KL
Sbjct: 203 GLFPILLNMIDTDPAETVRIKALYAVSCIVREHPMSLKYMDINDGYSILLRAMQSSIKKL 262

Query: 243 VIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300
            IKS FL++ LC+    N +K  L++MG++EQ   L+ I D L  E+ + LL+ L  L  
Sbjct: 263 QIKSAFLLSSLCSKENVNDLKLTLVNMGLIEQATGLLAIGDLL-PEIRDQLLNILDGLTN 321

Query: 301 DS 302
           D+
Sbjct: 322 DN 323

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014402|ref|XP_003691221.1| PREDICTED: hsp70-binding protein 1-like [Apis florea]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 173/302 (57%), Gaps = 22/302 (7%)

Query: 12  TRKQPIRLEDSQA----QPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQE 67
           +R +P+ +E   +    +P + +E  PNQ      PRQP+NLQ LLR+A+EA   + +Q 
Sbjct: 33  SRARPLSIEGPSSMNITEPQV-LEPLPNQ------PRQPTNLQGLLRFAMEA---TNSQN 82

Query: 68  APNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALD 122
             +      M+E  + FL   L+S+  N+  EL+K IK L         D       AL+
Sbjct: 83  VTSGTPFQPMDEERQEFLKQTLSSLSCNIIEELQKSIKVLSNVIDLRPDDDTSQHESALE 142

Query: 123 NLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182
            ++D++ +ID ANDF K+GG  +  P L      +RWRAA+ +A++ QNNPF Q   ++T
Sbjct: 143 KIADFVDNIDIANDFYKIGGFSIFGPCLNSPHSSIRWRAADVIAELAQNNPFCQERFLET 202

Query: 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKL 242
               +LL  I+ D   TV++K+LYAVSC+VRE+   LK     DG+S+LLR +QS  +KL
Sbjct: 203 GLFPILLNMIDTDPAETVRIKALYAVSCIVREHPMSLKYMDINDGYSILLRAMQSSIKKL 262

Query: 243 VIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300
            IKS FL++ LC     N +K  L++MG++EQ   L+ I D L  E+ + LL+ L  L  
Sbjct: 263 QIKSAFLLSSLCNKENVNDLKLTLVNMGLIEQATGLLAIGDLL-PEIRDQLLNILDGLTN 321

Query: 301 DS 302
           D+
Sbjct: 322 DN 323

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849635|ref|XP_003700450.1| PREDICTED: hsp70-binding protein 1-like [Megachile rotundata]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 173/302 (57%), Gaps = 20/302 (6%)

Query: 10  AVTRKQPIRLEDSQAQPNL---AIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQ 66
           A +  +P+ +E      N     +E  PNQ      PRQPSNLQ LLR+A+EA   + +Q
Sbjct: 31  ASSSTRPLSIEGPSTSNNRESQVLEVLPNQ------PRQPSNLQGLLRFAMEA---TNSQ 81

Query: 67  EAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGAL 121
            A +  +   M++  + FL + L+S+  N+  EL+K IK L         D       AL
Sbjct: 82  GASSNTQFHPMDKERQEFLKETLSSLSCNIIEELQKAIKVLSNVVDLRPDDDTSEEETAL 141

Query: 122 DNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ 181
           + ++D++ +ID ANDF K+GG  +  P L  S   +RWRAA+ +A++ QNNPF Q   ++
Sbjct: 142 ERIADFVDNIDTANDFYKIGGFSIFGPCLNSSHSSIRWRAADVIAELAQNNPFCQERCLE 201

Query: 182 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEK 241
                +LL+ I+ D    V++K+LYAVSC+VRE+   LK     DG+SVLLR +QS  +K
Sbjct: 202 AGLFPILLSMIDTDPTDAVRIKALYAVSCIVREHPISLKYMDINDGYSVLLRAMQSSVKK 261

Query: 242 LVIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299
           L IKS FL++ LC+    N +K  L++MG+VEQ   L+  +D L  E+ + L++ L  L 
Sbjct: 262 LQIKSAFLLSSLCSKENINDLKLTLVNMGLVEQAAGLLATDDLL-PEIRDQLINILDGLT 320

Query: 300 KD 301
            D
Sbjct: 321 ND 322

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090129|ref|XP_971541.1| PREDICTED: similar to AGAP008392-PA [Tribolium castaneum] gi|270013498|gb|EFA09946.1| hypothetical protein TcasGA2_TC012099 [Tribolium castaneum]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 176/323 (54%), Gaps = 16/323 (4%)

Query: 34  PNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM 93
           P  D+P  QPRQP+NLQ LL++A+EA   ++ ++AP  +    M EA R FL +ALNS+ 
Sbjct: 23  PTGDVP--QPRQPTNLQGLLKFAMEA---TKLEDAPRESTFQPMEEARRKFLEEALNSLT 77

Query: 94  VNVGAELEKIIK------TLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQ 147
           V+V   L K IK      TL    D  +    ALD +SD++C ID ANDF K+GG  ++ 
Sbjct: 78  VDVIEVLLKQIKILEKVDTLNAGDDDSEY-TTALDTISDFVCDIDTANDFHKIGGFVIVS 136

Query: 148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 207
           P L+   P++R +    +A++ QNN + Q  ++++  + +L+  +E D   +V VK+LYA
Sbjct: 137 PCLKCKSPKVRAQVCNLLAELCQNNAYCQRVVLESGIMPILVEIVEQDPEVSVVVKALYA 196

Query: 208 VSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
           +SC+VR+N     +FI+  G  V L  ++  +EK+  K CFL+  LC+     K  L+ +
Sbjct: 197 ISCIVRQNTGACAQFIQYKGVQVFLEALKRNEEKINTKICFLLRALCSSQADFKSRLVFV 256

Query: 268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH 327
           G +  +  L+      D    EH+L  L  LI+D+  A +  R   +N K  L     + 
Sbjct: 257 GYIPVLFSLLSTPKTSD----EHVLGLLQKLIEDNSAAINESRQNKVNAKETLENYLSQI 312

Query: 328 AGNEVYHKELEYVNSVLTEVFEE 350
            G E Y  E E  +++   +F +
Sbjct: 313 KGKEEYSNEEELCDTIYNTLFAQ 335

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296710|ref|XP_317058.4| AGAP008392-PA [Anopheles gambiae str. PEST] gi|157014842|gb|EAA12545.5| AGAP008392-PA [Anopheles gambiae str. PEST]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 42  QPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELE 101
           QPRQP N+Q LL++A+EA   +++++AP+      M+E  R FL +AL S+ V+V  +LE
Sbjct: 9   QPRQPRNMQGLLKFAMEA---TKSEDAPHPAHLQPMDEERRRFLEEALKSLTVDVVQQLE 65

Query: 102 KIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRA 161
           K +K L ++    D    A+D + DY+  ID ANDF K+GG  +++P LE    E+R   
Sbjct: 66  KAMKVLLDSDSNDDAKAEAIDTVIDYVQDIDTANDFYKVGGFVIIKPGLESPSAEVRSGT 125

Query: 162 AETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221
            + V ++ QNNPF Q  +++ + L   LT +  D  T  Q ++++A+SC+VR +E CL  
Sbjct: 126 LQLVGELAQNNPFCQQHLLEQNIL-AKLTELLSDEPTVAQ-QAMHAISCMVRHHEPCLAA 183

Query: 222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED 281
           FI   G   +L CIQ+  EKL IK+ FL+A LCT+   V+   + +  VE++   +    
Sbjct: 184 FIDIGGLECILGCIQTDNEKLRIKASFLMANLCTEFAAVRDEFIKLNAVERVMAAVKPSR 243

Query: 282 ALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVN 341
             D ++     +AL++L   +  A+ + R    N+K KL  I + + G E   ++LEY N
Sbjct: 244 DYDAKLE----TALSTLNVLTECAEGVRRCREGNMKQKLETIIKLNGGKEECQEQLEYAN 299

Query: 342 SVLTEVF 348
           ++L   +
Sbjct: 300 TLLKRCY 306

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189217649|ref|NP_001121272.1| HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 [Xenopus laevis] gi|115528255|gb|AAI24887.1| LOC100158355 protein [Xenopus laevis]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 190/325 (58%), Gaps = 25/325 (7%)

Query: 42  QPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELE 101
           +P Q  NLQ LL  A+EAG+ S +  AP   +   M+E  R +L  A+NS       E++
Sbjct: 10  RPHQ-QNLQGLLHMAIEAGTMSDS--AP---QTEPMSEERRQWLQQAMNSAFSGQVDEVK 63

Query: 102 KIIKTLKE------NQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL-QPLLEGSD 154
            + + LKE      N D++D    AL+ L+D   ++D A+DF K+GG+ +L    +    
Sbjct: 64  IMKECLKELSNETHNGDEEDAKEQALELLADLCDNLDNASDFCKLGGMNLLLSRYVNCPQ 123

Query: 155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214
            ELRWR+A+ +    QN PF Q   ++   + +LL  ++ DSN  V++K+L+A+SCLVRE
Sbjct: 124 AELRWRSADLIGICSQNVPFVQETALRLGAVKILLQLLDLDSNDQVRIKALFAISCLVRE 183

Query: 215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 274
            EE L EF+K+DGFSVL+R +QS  +KL +KS FL+  L   + + K  L SMGMV+Q+ 
Sbjct: 184 QEEGLAEFLKQDGFSVLMRAMQSDAQKLKVKSAFLLQNLLISHPEHKGTLCSMGMVQQLV 243

Query: 275 VLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLN----LKFKLNFIKEKHAGN 330
            L+  +    +  +EH+L AL S + D P+A S CR+  L     LK +   +++K    
Sbjct: 244 SLLHTD---HSPFHEHVLGALCSFVTDFPQAVSECRVPELAFEDLLKERCQLLEKK---- 296

Query: 331 EVYHKELEYVNSVLTEVFEEDSPEE 355
           E + +ELEY  S+L   F++ +PE+
Sbjct: 297 EEFQEELEYCKSLLQICFQK-TPED 320

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
ZFIN|ZDB-GENE-030219-55	334	hspbp1 "HSPA (heat shock 70kDa	0.858	0.928	0.354	2.3e-39
RGD|628677	357	Hspbp1 "HSPA binding protein,	0.850	0.859	0.345	2.4e-37
MGI|MGI:1913495	357	Hspbp1 "HSPA (heat shock 70kDa	0.847	0.857	0.350	3e-37
UNIPROTKB|Q9NZL4	362	HSPBP1 "Hsp70-binding protein	0.844	0.842	0.345	2.1e-36
UNIPROTKB|E2QZB3	357	HSPBP1 "Uncharacterized protei	0.850	0.859	0.342	1.2e-35
UNIPROTKB|F1RMR6	357	HSPBP1 "Uncharacterized protei	0.847	0.857	0.328	1.2e-35
UNIPROTKB|Q2KJ77	357	HSPBP1 "HSPA (Heat shock 70kDa	0.847	0.857	0.325	2.4e-35
FB|FBgn0036306	306	CG10973 [Drosophila melanogast	0.811	0.957	0.299	1.9e-26
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.631	0.703	0.278	1.6e-18
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.631	0.628	0.273	9.5e-18

ZFIN|ZDB-GENE-030219-55 hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 117/330 (35%), Positives = 181/330 (54%)

Query:    46 PSNLQDLLRYAVEAGSRS--------RAQEAPNINRAASMNEANRGFLLDALNSM----- 92
             P NLQ +L+ AVEAGS S          QE  +  R A ++E  +G  +D +  M     
Sbjct:    11 PRNLQGVLQMAVEAGSASDGPSPLEPMTQERMDFLRGA-LSEVCKG-QMDEVEQMKRCLE 68

Query:    93 MVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPV-LQPLLE 151
             ++      ++ ++  +E + + D    AL+ LS+   ++D A D +K+GGL + L   L 
Sbjct:    69 VLKTDGCKDREVEGEEEEEQEDDEREEALEMLSELCENLDNARDLMKLGGLDLCLSRCLC 128

Query:   152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
              ++  +RWRAA+ +A   QN P  Q +++    L  LL   ++D ++TV+VK+LYAVSCL
Sbjct:   129 HTEAGIRWRAAQLIASSAQNMPEVQFYLLNQGALLTLLQLADNDPHSTVRVKALYAVSCL 188

Query:   212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
             VRE E  LK+F+  DGFSVL+R +QS  EKL  KS FL+  L   + + K  +LSMGMV+
Sbjct:   189 VREQEAGLKDFLSHDGFSVLMRGMQSDSEKLRTKSAFLLLNLLNSHPEHKDTVLSMGMVQ 248

Query:   272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNE 331
             Q   L+ +  +  + ++EH+L AL  L++DSP   S CR   L L+  L    +   G E
Sbjct:   249 Q---LVSVLRSPHSSVHEHVLGALCCLVEDSPRGMSDCRDPSLGLEELLKQRVQDLRGQE 305

Query:   332 VYHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
                +ELE+   +    F   + E+ +  DR
Sbjct:   306 ESLEELEFCERLRAVCFPGQTQED-NAMDR 334

GO:0005575 "cellular_component" evidence=ND

RGD|628677 Hspbp1 "HSPA binding protein, cytoplasmic cochaperone 1" [Rattus norvegicus (taxid:10116)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 115/333 (34%), Positives = 177/333 (53%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             PR P NLQ LL+ A+ AGS     E P+      M+E  R +L +A+++       E+E+
Sbjct:    37 PRLPRNLQGLLQMAITAGS-----EEPD-PPPEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query:   103 I---IKTLKE----NQDQKDICI------GALDNLSDYICSIDYANDFLKMGGLPVLQP- 148
             +   ++ L +       + ++        GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct:    91 MKNCLRVLSQATPPTAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 150

Query:   149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
              LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ DS  TV+VK+L+A+
Sbjct:   151 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAI 210

Query:   209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
             SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMG
Sbjct:   211 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 270

Query:   269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
             MV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct:   271 MVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 327

Query:   329 GNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
              +E Y +ELE+   +L   F   SP + D  DR
Sbjct:   328 QHEEYQEELEFCEKLLQTCFS--SPTD-DSMDR 357

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

MGI|MGI:1913495 Hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Mus musculus (taxid:10090)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 117/334 (35%), Positives = 177/334 (52%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             PR P NLQ LL+ A+ AGS+    + P       M+E  R +L +A+++       E+E+
Sbjct:    37 PRPPRNLQGLLQMAITAGSQE--PDPP----PEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query:   103 IIKTLK-----------ENQ---DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
             +   L+           E +   DQ++   GAL+ L+D   ++D A DF ++ G+ +L  
Sbjct:    91 MKNCLRVLSQATPAMAGEAELATDQQER-EGALELLADLCENMDNAADFCQLSGMHLLVG 149

Query:   149 -LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 207
               LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ DS  TV+VK+L+A
Sbjct:   150 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFA 209

Query:   208 VSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
             +SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SM
Sbjct:   210 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 269

Query:   268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH 327
             GMV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +  
Sbjct:   270 GMVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 326

Query:   328 AGNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
                E Y +ELE+   +L   F   SP + D  DR
Sbjct:   327 QQREEYQEELEFCEKLLQTCFS--SPTD-DSMDR 357

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q9NZL4 HSPBP1 "Hsp70-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 115/333 (34%), Positives = 176/333 (52%)

Query:    44 RQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKI 103
             R P NLQ LL+ A+ AGS     E P+      M+E  R +L +A+++       E+E++
Sbjct:    43 RPPRNLQGLLQMAITAGS-----EEPD-PPPEPMSEERRQWLQEAMSAAFRGQREEVEQM 96

Query:   104 IKTLK--------------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP- 148
                L+              +  DQ++   GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct:    97 KSCLRVLSQPMPPTAGEAEQAADQQER-EGALELLADLCENMDNAADFCQLSGMHLLVGR 155

Query:   149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
              LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A+
Sbjct:   156 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 215

Query:   209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
             SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMG
Sbjct:   216 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 275

Query:   269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
             MV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct:   276 MVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 332

Query:   329 GNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
              +E Y +ELE+   +L   F   SP + D  DR
Sbjct:   333 QHEEYQEELEFCEKLLQTCFS--SPAD-DSMDR 362

GO:0004857 "enzyme inhibitor activity" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=TAS

UNIPROTKB|E2QZB3 HSPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 114/333 (34%), Positives = 173/333 (51%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             P  P NLQ LL+ A+ AGS     E P+      M+E  R +L +A+++       E+E+
Sbjct:    37 PLPPRNLQGLLQMAITAGS-----EEPD-PPPEPMSEERRQWLQEAVSAAFRGQREEVEQ 90

Query:   103 IIKTLKE-NQDQKDICI------------GALDNLSDYICSIDYANDFLKMGGLPVLQP- 148
             +   L+  +Q    + +            GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct:    91 MKNCLRVLSQPIPSLAVEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 150

Query:   149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
              LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D    V+VK+L+A+
Sbjct:   151 YLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDLVRVKALFAI 210

Query:   209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
             SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMG
Sbjct:   211 SCLVREQEVGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 270

Query:   269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
             MV+Q+  LI  E +     +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct:   271 MVQQLVALIRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 327

Query:   329 GNEVYHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
              +E Y +ELE+   +L   F   SP + D  DR
Sbjct:   328 QHEEYQEELEFCEKLLQTCFS--SPTD-DSMDR 357

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

UNIPROTKB|F1RMR6 HSPBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 108/329 (32%), Positives = 172/329 (52%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             P  P NLQ LL+ A+ AGS     E P+      M+E  R +L +A+++       E+E+
Sbjct:    37 PPPPRNLQGLLQMAITAGS-----EEPD-PPPEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query:   103 I---IKTLKE----NQDQKDICI------GALDNLSDYICSIDYANDFLKMGGLPVLQP- 148
             +   ++ L +    +  + ++        GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct:    91 MKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 150

Query:   149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
              LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D   +V+VK+L+A+
Sbjct:   151 YLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAI 210

Query:   209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
             SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMG
Sbjct:   211 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 270

Query:   269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
             MV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct:   271 MVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 327

Query:   329 GNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
               E Y +ELE+   +L   F   + +  D
Sbjct:   328 QREEYQEELEFCEKLLQTCFSTPTDDSMD 356

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

UNIPROTKB|Q2KJ77 HSPBP1 "HSPA (Heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 107/329 (32%), Positives = 172/329 (52%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             P  P NLQ LL+ A+ AGS     E P+      M+E  R +L +A+++       E+E+
Sbjct:    37 PPPPRNLQGLLQMAITAGS-----EEPD-PPPEPMSEERRQWLQEAMSAAFRGQREEVEQ 90

Query:   103 I---IKTLKE----NQDQKDICI------GALDNLSDYICSIDYANDFLKMGGLPVLQP- 148
             +   ++ L +    +  + ++        GAL+ L+D   ++D A DF ++ G+ +L   
Sbjct:    91 MKNCLRVLSQPTPSSAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 150

Query:   149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
              LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D    V+VK+L+A+
Sbjct:   151 YLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDAVRVKALFAI 210

Query:   209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
             SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L +MG
Sbjct:   211 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCAMG 270

Query:   269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328
             MV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +   
Sbjct:   271 MVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 327

Query:   329 GNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
              +E Y +ELE+   +L   F   + +  D
Sbjct:   328 QHEEYQEELEFCEKLLQTCFSTPTDDSMD 356

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

FB|FBgn0036306 CG10973 [Drosophila melanogaster (taxid:7227)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 90/301 (29%), Positives = 147/301 (48%)

Query:    43 PRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEK 102
             PR   +LQ++L+Y V+    +  + AP +    + +     FL +ALN+M V+  A L+ 
Sbjct:     7 PRGALSLQNVLKYTVQHHDPN-PEAAPKLE---TPDPERAQFLANALNAMTVDAAAALKA 62

Query:   103 IIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAA 162
              +  L   +   D  I +LD +  +I  ID A   +K+GG   L   +  SD E+R  A 
Sbjct:    63 ALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKLGGTATLLRYITHSDSEVRESAL 122

Query:   163 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222
              TVA++ QNN F QN +I   FL  L  ++ H +  TV+  SLYA+S L+R  +    EF
Sbjct:   123 NTVAEVAQNNVFCQNALINDKFLPALAKNLSHSNPNTVRC-SLYAISSLIRNFQPGYDEF 181

Query:   223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA 282
              +  G   L+ C++S    + +K+ FLIA L +    V+   +   +   +   +   D 
Sbjct:   182 KRIKGIRSLIPCLKSTNTNVYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDD 241

Query:   283 LDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS 342
              D +  E  L AL+SL ++S    S  + E + L  KL  I  K+  +E     + Y  +
Sbjct:   242 FDIKQ-ETTLFALSSLSRESELKLSTEKREEI-LS-KLQQIISKNKQSETCEDMVNYARN 298

Query:   343 V 343
             +
Sbjct:   299 I 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 67/241 (27%), Positives = 123/241 (51%)

Query:    77 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD--------QKDICIGALDNLSDYI 128
             ++E +R +  +A+ S  V+V   L++I + L+  Q          +DI  G LD L +++
Sbjct:    28 LSEEDRKWFAEAMQSQTVDVVKRLKEITQVLQTPQQVLEAHEVTPQDI-EGLLDELQEHV 86

Query:   129 CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 188
              SID AND   +GGL  L   L+ S+  +R ++A+ V+ IV+NNP SQ  +++ + L  L
Sbjct:    87 ESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVSTIVENNPRSQESVMEANGLESL 146

Query:   189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 248
             L     D++   + ++L A+S L+R N+  +  F   +G+S L   +++   +   K+  
Sbjct:   147 LLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIANGYSGLKDALETDSVRFQRKALN 206

Query:   249 LIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
             L+  L  +N+    + +  G+   M  L+    + D ++ E  L  L  L+K   +  S 
Sbjct:   207 LLHYLLQENDSDSDIAIEFGLHHLMMHLVS---SFDADVREAALRGLLELVKARKDC-ST 262

Query:   309 C 309
             C
Sbjct:   263 C 263

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 65/238 (27%), Positives = 121/238 (50%)

Query:    77 MNEANRGFLLDALNSMMVNVGAELEKII-------KTLKENQDQKDICIGALDNLSDYIC 129
             ++E +R + ++A+ S  V+V   +++I        + L E+    +     LD L +++ 
Sbjct:    28 LSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVLVEHGVTPEDIQDLLDELQEHVE 87

Query:   130 SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189
             SID AND   +GGL  L   L+ S   +R +AA+ V+ IVQNNP SQ  +++T+ L  LL
Sbjct:    88 SIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVVSTIVQNNPRSQELVMETNALESLL 147

Query:   190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
             ++   D++   + ++L A+S L+R N+  +  F   +G++ L   + S   +   K+  L
Sbjct:   148 SNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLANGYAGLRDALASDSVRFQRKALNL 207

Query:   250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS 307
             +  L  +++  + +   +G    M  L   +DA   E+ E  L  L  L ++  +  S
Sbjct:   208 LQYLLQEDDSDRSIATGLGFPRVMMHLASSDDA---EIREAALRGLLELSREKNDGSS 262

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99P31	HPBP1_MOUSE	No assigned EC number	0.3343	0.8393	0.8487	yes	N/A
Q9NZL4	HPBP1_HUMAN	No assigned EC number	0.3313	0.8421	0.8397	yes	N/A
Q6IMX7	HPBP1_RAT	No assigned EC number	0.3313	0.8393	0.8487	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG2160|consensus	342		100.0
KOG0166|consensus	514		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
KOG0166|consensus	514		99.88
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.86
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.83
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.8
PF08609	92	Fes1: Nucleotide exchange factor Fes1; InterPro: I	99.69
KOG4224|consensus	550		99.69
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.63
KOG4224|consensus	550		99.54
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.52
KOG2160|consensus	342		99.34
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.33
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.3
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.19
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.16
KOG4199|consensus	461		99.15
KOG4199|consensus	461		99.12
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.07
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.07
KOG1293|consensus	678		98.92
KOG1517|consensus	1387		98.92
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.91
KOG1048|consensus	717		98.77
KOG0168|consensus	1051		98.77
KOG1048|consensus	717		98.74
PRK09687	280	putative lyase; Provisional	98.63
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.6
KOG2122|consensus	2195		98.53
KOG4500|consensus	604		98.47
PRK09687	280	putative lyase; Provisional	98.46
KOG0946|consensus	970		98.45
KOG1293|consensus	678		98.42
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.42
PTZ00429	746	beta-adaptin; Provisional	98.33
KOG2171|consensus	1075		98.31
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.31
KOG2122|consensus	2195		98.31
KOG0168|consensus	1051		98.27
PF05536	543	Neurochondrin: Neurochondrin	98.24
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	98.15
KOG0946|consensus	970		98.15
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.15
KOG2171|consensus	1075		98.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.12
KOG4500|consensus	604		98.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.11
KOG2759|consensus	442		98.1
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.09
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.04
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.02
KOG3678|consensus	832		98.0
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.99
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.96
PTZ00429	746	beta-adaptin; Provisional	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.89
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.74
KOG4646|consensus	173		97.73
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.71
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.64
KOG1062|consensus	866		97.6
KOG1517|consensus	1387		97.6
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.56
KOG2759|consensus	442		97.53
KOG3678|consensus	832		97.5
COG5369	743	Uncharacterized conserved protein [Function unknow	97.49
PF05536	543	Neurochondrin: Neurochondrin	97.46
KOG4413|consensus	524		97.44
KOG1241|consensus	859		97.43
KOG1222|consensus	791		97.41
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.4
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.36
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.33
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.33
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.31
KOG4646|consensus	173		97.25
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.25
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.19
COG5369	743	Uncharacterized conserved protein [Function unknow	97.18
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.16
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.12
KOG2023|consensus	885		97.11
TIGR02270	410	conserved hypothetical protein. Members are found	97.08
PF05004	309	IFRD: Interferon-related developmental regulator (	97.08
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.01
TIGR02270	410	conserved hypothetical protein. Members are found	97.0
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.0
KOG2259|consensus	823		96.96
KOG1061|consensus	734		96.95
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.95
KOG1059|consensus	877		96.93
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.92
KOG0213|consensus	1172		96.86
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.72
KOG1222|consensus	791		96.69
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.68
KOG2023|consensus	885		96.68
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.66
KOG1060|consensus	968		96.63
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.6
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.6
KOG1248|consensus	1176		96.53
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.53
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.52
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.51
KOG1991|consensus	1010		96.49
KOG1824|consensus	1233		96.49
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.48
KOG4535|consensus	728		96.44
KOG4413|consensus	524		96.4
KOG1241|consensus	859		96.37
KOG1789|consensus	2235		96.35
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.34
KOG3036|consensus	293		96.33
KOG2999|consensus	713		96.27
KOG0414|consensus	1251		96.27
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.21
KOG0212|consensus	675		96.2
KOG2734|consensus	536		96.16
KOG1991|consensus	1010		96.08
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.05
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	96.03
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.02
KOG1062|consensus	866		95.91
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	95.89
KOG1059|consensus	877		95.74
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	95.71
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.71
KOG2734|consensus	536		95.68
KOG1058|consensus	948		95.68
KOG2274|consensus	1005		95.65
KOG1789|consensus	2235		95.65
KOG2973|consensus	353		95.59
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.55
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	95.49
KOG0213|consensus	1172		95.48
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.35
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	95.31
KOG1242|consensus	569		95.29
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.25
KOG0301|consensus	745		95.21
KOG1240|consensus	1431		95.17
KOG2259|consensus	823		95.17
KOG2956|consensus	516		95.14
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.02
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	94.95
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.92
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.83
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.83
KOG2025|consensus	892		94.81
KOG1242|consensus	569		94.74
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	94.73
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.71
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.63
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.63
KOG1248|consensus	1176		94.63
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.48
cd03561	133	VHS VHS domain family; The VHS domain is present i	94.47
KOG2999|consensus	713		94.42
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.36
KOG1967|consensus	1030		94.24
KOG2611|consensus	698		94.21
KOG2025|consensus	892		94.13
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.11
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.11
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.02
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.99
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	93.98
KOG1240|consensus	1431		93.95
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.82
KOG2137|consensus	700		93.71
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.61
KOG4151|consensus	748		93.54
KOG1020|consensus	1692		93.41
KOG3036|consensus	293		93.29
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.28
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.22
KOG1824|consensus	1233		93.16
KOG0212|consensus	675		92.95
KOG2274|consensus	1005		92.84
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.77
KOG1061|consensus	734		92.67
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.5
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	92.41
KOG1820|consensus	815		92.32
KOG1832|consensus	1516		92.31
KOG4151|consensus	748		92.24
KOG2611|consensus	698		92.18
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.15
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	92.15
KOG1243|consensus	690		92.09
KOG1943|consensus	1133		92.03
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.99
KOG4653|consensus	982		91.93
KOG1967|consensus	1030		91.77
KOG1058|consensus	948		91.66
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	91.64
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.39
cd03561	133	VHS VHS domain family; The VHS domain is present i	91.3
KOG1077|consensus	938		91.21
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.21
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	91.11
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.03
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.88
KOG2973|consensus	353		90.82
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.81
PF05004	309	IFRD: Interferon-related developmental regulator (	90.74
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	90.56
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	90.52
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.48
KOG2956|consensus	516		89.95
COG5116	926	RPN2 26S proteasome regulatory complex component [	89.88
KOG0413|consensus	1529		89.38
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.37
KOG1077|consensus	938		89.35
COG5656	970	SXM1 Importin, protein involved in nuclear import	89.25
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.21
KOG1060|consensus	968		89.19
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.15
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.13
KOG2062|consensus	929		88.99
KOG1566|consensus	342		88.96
KOG4535|consensus	728		88.9
KOG2933|consensus	334		88.53
KOG1020|consensus	1692		88.44
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	87.99
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.7
KOG2032|consensus	533		87.56
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	87.45
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.3
COG5116	926	RPN2 26S proteasome regulatory complex component [	87.12
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	87.03
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	86.64
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.54
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	86.5
COG5098	1128	Chromosome condensation complex Condensin, subunit	86.46
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	86.31
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	86.03
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.75
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	85.6
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	85.15
KOG2062|consensus	929		85.07
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.77
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	84.48
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	83.88
KOG0414|consensus	1251		83.82
KOG0567|consensus	289		83.76
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	83.46
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	83.17
KOG3665|consensus	699		83.13
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.64
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	82.47
PLN03205	652	ATR interacting protein; Provisional	82.18
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	81.79
KOG1943|consensus	1133		81.61
PF07814	361	WAPL: Wings apart-like protein regulation of heter	81.05
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	80.49

>KOG2160|consensus

Probab=100.00  E-value=3.8e-41  Score=318.95  Aligned_cols=309  Identities=29%  Similarity=0.359  Sum_probs=262.0

Q ss_pred             CCCCCCCCHHHHHHHHhhcC--CCCCCCCCC------cccccCCCCHHhHHHHHHHHHhhc---CCHHHHH-------HH
Q psy14164         41 RQPRQPSNLQDLLRYAVEAG--SRSRAQEAP------NINRAASMNEANRGFLLDALNSMM---VNVGAEL-------EK  102 (361)
Q Consensus        41 ~~~~~~~~l~~LL~w~~~~s--~~~~~~~~~------~~~~~~~~s~e~~~~L~eal~~~~---~~~~~~m-------k~  102 (361)
                      +..-.|.+|+|++.|++.++  .+...+..-      +..+.. -.+|+++|+.++|...+   ++.++.|       +.
T Consensus         6 ~~~~~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~   84 (342)
T KOG2160|consen    6 GSHVRPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK-DEKEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM   84 (342)
T ss_pred             cccccCccccchhhcccccccccCCCchhhhccchhhhhhhcc-CcccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence            34668899999999999998  322211100      001111 11889999999998886   3333333       33


Q ss_pred             -HHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh
Q psy14164        103 -IIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ  181 (361)
Q Consensus       103 -~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~  181 (361)
                       ....++.++.+.++|+.||++|+++||+||||++|++.||+.+++.+|++++..||+.|+|+||+++||||.+|+.|++
T Consensus        85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E  164 (342)
T KOG2160|consen   85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE  164 (342)
T ss_pred             hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence             3344455667789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCch
Q psy14164        182 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQ  259 (361)
Q Consensus       182 ~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~  259 (361)
                      .|+++.|+..|+++.+..+|++|+||||+++|++++++..|...+|+..|+.+|++  .+.++|+||++++++|+.++.+
T Consensus       165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            99999999999988888999999999999999999999999999999999999998  6899999999999999999888


Q ss_pred             HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHH
Q psy14164        260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEY  339 (361)
Q Consensus       260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~  339 (361)
                      ....+...++...+..+..+.   +.++++.++.++..++..-+... +|..+-..+.+.|+++++.+..|...+.+++|
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~~~~~~~-~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l  320 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLSELSTRK-ELFVSLLNLEELLKSLIQIISDHAALEEERQL  320 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999988   99999999999999987654333 45566667888899888888778788889999


Q ss_pred             HHHHHHHhcCCCCCc
Q psy14164        340 VNSVLTEVFEEDSPE  354 (361)
Q Consensus       340 ~~~il~~~f~~~~~~  354 (361)
                      +...++.||.++..+
T Consensus       321 ~~~l~~~~~e~~~~~  335 (342)
T KOG2160|consen  321 VNSLWEICGEVPSIL  335 (342)
T ss_pred             HHHHHHHhcccHHHH
Confidence            999999999877643

>KOG0166|consensus

Probab=100.00  E-value=7e-32  Score=268.28  Aligned_cols=261  Identities=16%  Similarity=0.215  Sum_probs=224.3

Q ss_pred             HHHHhhc-----CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHH
Q psy14164         87 DALNSMM-----VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELR  158 (361)
Q Consensus        87 eal~~~~-----~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr  158 (361)
                      .+|+.++     ..+.+.++.++.+|..--  .+.+.+..|+++|.|+.+.. +.-..+++.|++|.|+.+|.++++.++
T Consensus       217 W~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~  296 (514)
T KOG0166|consen  217 WTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV  296 (514)
T ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence            4477776     245678888888876433  45688999999999999654 445678899999999999999999999


Q ss_pred             HHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC
Q psy14164        159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK  238 (361)
Q Consensus       159 ~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~  238 (361)
                      .+|++++||++++++.+++.+++.|++|.|..++...+...+|+.|+|+||||++|++...++++++|.+|.|+++|++.
T Consensus       297 ~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~  376 (514)
T KOG0166|consen  297 TPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA  376 (514)
T ss_pred             cHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc
Confidence            99999999999999999999999999999999999656668999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHH
Q psy14164        239 KEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLK  317 (361)
Q Consensus       239 ~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~  317 (361)
                      ++++|++|+|+|+|++.+ .+++..++++.|+|+++|.+|...   |.++...++.+|.+|.+........-.   ..+.
T Consensus       377 ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~---D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~  450 (514)
T KOG0166|consen  377 EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP---DVKIILVALDGLENILKVGEAEKNRGT---NPLA  450 (514)
T ss_pred             chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC---ChHHHHHHHHHHHHHHHHHHHhccccc---cHHH
Confidence            999999999999999987 778999999999999999999888   999999999999999986643221000   1223


Q ss_pred             HHHH-----HHHHhhcChhhhHHHHHHHHHHHHHhcCCCCCc
Q psy14164        318 FKLN-----FIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPE  354 (361)
Q Consensus       318 ~~Le-----~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~~~  354 (361)
                      ..+|     +.++.+|.| ++.++|+.|..|+++||++++++
T Consensus       451 ~~IEe~ggldkiE~LQ~h-en~~Iy~~A~~II~~yf~~e~~~  491 (514)
T KOG0166|consen  451 IMIEEAGGLDKIENLQSH-ENEEIYKKAYKIIDTYFSEEDDE  491 (514)
T ss_pred             HHHHHccChhHHHHhhcc-ccHHHHHHHHHHHHHhcCCCccc
Confidence            3444     457788877 78999999999999999987554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=4.5e-31  Score=247.12  Aligned_cols=264  Identities=16%  Similarity=0.228  Sum_probs=224.0

Q ss_pred             HHHHHH---HHhhc-----CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhc
Q psy14164         83 GFLLDA---LNSMM-----VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLE  151 (361)
Q Consensus        83 ~~L~ea---l~~~~-----~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~  151 (361)
                      ..++++   |+.+.     +++..-|.+++.+|..--  .+.+...+|++++.++++-...+ ..+...|..+.|+.+|.
T Consensus       216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs  295 (526)
T COG5064         216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS  295 (526)
T ss_pred             HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence            555555   67776     455778888888876533  45689999999999999754433 55778898999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      |++..|+.+|++.+||++++++.+++.++++|+++.+..+|++ +...+|+.|||.||||+.|+....+++++.+.+|+|
T Consensus       296 ~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL  374 (526)
T COG5064         296 HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL  374 (526)
T ss_pred             CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence            9999999999999999999999999999999999999999998 456999999999999999999999999999999999


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH-
Q psy14164        232 LRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS-  307 (361)
Q Consensus       232 v~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~-  307 (361)
                      +++|.+.+.++|++|||+|+|..++   .|+..++++++|+|++|+.+|...   +..+.+.+|.++.+++......-. 
T Consensus       375 i~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~---dNkiiev~LD~~eniLk~Ge~d~~~  451 (526)
T COG5064         375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV---DNKIIEVALDAIENILKVGEQDRLR  451 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc---CccchhhhHHHHHHHHhhhhHHHHh
Confidence            9999999999999999999999987   578999999999999999999998   999999999999999988753221 


Q ss_pred             hhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164        308 LCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSVLTEVFEEDS  352 (361)
Q Consensus       308 ~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~  352 (361)
                      ...+.+ ....+++     +.+..+|.. .+.++|+++++|+++||+++|
T Consensus       452 ~~~nin-~ya~~vE~Aggmd~I~~~Q~s-~n~~iy~KAYsIIe~fFgeeD  499 (526)
T COG5064         452 YGKNIN-IYAVYVEKAGGMDAIHGLQDS-VNRTIYDKAYSIIEKFFGEED  499 (526)
T ss_pred             ccCCcc-HHHHHHHhcccHHHHHHhhhc-cccHHHHHHHHHHHHHcccch
Confidence            122221 2233344     345566644 788999999999999999887

>KOG0166|consensus

Probab=99.88  E-value=8.8e-22  Score=196.32  Aligned_cols=201  Identities=17%  Similarity=0.329  Sum_probs=173.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  179 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v  179 (361)
                      ...++.|.. .....-+..|.+.|-++.. ..+..+.++..|++|.++.||.|++..|++.|+|+|||++...|.+++.+
T Consensus       112 ~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v  190 (514)
T KOG0166|consen  112 PRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV  190 (514)
T ss_pred             HHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence            344444443 2345668888888888764 44566789999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       180 ~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++|++++|+.++.........+.+.|+|||+|||. |+..-.. -...+|.|..+++++|..|...|||+|++|+.+.+
T Consensus       191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~-v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n  269 (514)
T KOG0166|consen  191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDV-VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN  269 (514)
T ss_pred             HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence            999999999999997554579999999999999996 3332122 25789999999999999999999999999999999


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      +..+.+++.|+++.|+.+|.+.   ...++..||+++.+|+.++....
T Consensus       270 e~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QT  314 (514)
T KOG0166|consen  270 EKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQT  314 (514)
T ss_pred             HHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHHHH
Confidence            9999999999999999999999   88999999999999999887544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.86  E-value=2.9e-21  Score=181.44  Aligned_cols=245  Identities=15%  Similarity=0.231  Sum_probs=183.8

Q ss_pred             cccCCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHH----HhcCCCCHHH-----------------------HHHHHHHH
Q psy14164         72 NRAASMNEANRGFLLDALNSMMVNVGAELEKIIKT----LKENQDQKDI-----------------------CIGALDNL  124 (361)
Q Consensus        72 ~~~~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~----L~~~~~~~~~-----------------------~~~Al~~L  124 (361)
                      +..-||.+.-...|....++++.||.+.--.+...    |+......-+                       +.+|.++|
T Consensus        60 ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWal  139 (526)
T COG5064          60 SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWAL  139 (526)
T ss_pred             hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHH
Confidence            34447777766677888888887776644444333    2222111111                       12233333


Q ss_pred             HHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-CHHHHH
Q psy14164        125 SDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQV  202 (361)
Q Consensus       125 ~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~  202 (361)
                      -....-. +....++..|++|.++++|.+++.+||.+|.|+|||++...+.|++.++++|++.+|+.+|.+.. +..+.+
T Consensus       140 TNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR  219 (526)
T COG5064         140 TNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR  219 (526)
T ss_pred             hhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH
Confidence            3322111 11123567899999999999999999999999999999999999999999999999999998643 357889


Q ss_pred             HHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC
Q psy14164        203 KSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED  281 (361)
Q Consensus       203 ~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~  281 (361)
                      .+.|.|||+|||. |+.-...+ .-.+|.|..++.+.|..+...|||+|++|..+..+-.+.+++.|+.+.|+++|.++ 
T Consensus       220 n~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-  297 (526)
T COG5064         220 NATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-  297 (526)
T ss_pred             HhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-
Confidence            9999999999994 33322232 35799999999999999999999999999998888999999999999999999999 


Q ss_pred             CCChhHHHHHHHHHHHHHhcChH---HHHhhccCcchHHHHHH
Q psy14164        282 ALDTEMNEHLLSALASLIKDSPE---AQSLCRLEPLNLKFKLN  321 (361)
Q Consensus       282 ~~d~~~~e~al~aL~~L~~~~~~---~~~~~~~~~l~l~~~Le  321 (361)
                        +..++..+++.+.+|+.++..   .+-.|+... .|..+|.
T Consensus       298 --sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs  337 (526)
T COG5064         298 --SAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLS  337 (526)
T ss_pred             --cccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhc
Confidence              999999999999999998753   333454332 4444444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.83  E-value=9.9e-19  Score=196.60  Aligned_cols=184  Identities=13%  Similarity=0.142  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      ..+..+.+.|..++.++.+...|...|++++||.||.+.+.++|..++|+|.+++.+++..++.+.+.|++|.|+++|.+
T Consensus       378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s  457 (2102)
T PLN03200        378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL  457 (2102)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence            34577788888888888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  274 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv  274 (361)
                       .+..+++.|+|+|++++.+++.+...++++||+|.|+++|.+++.++|..|+|+|+||+...++.+..+.+.|++++|+
T Consensus       458 -~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV  536 (2102)
T PLN03200        458 -SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL  536 (2102)
T ss_pred             -CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence             4679999999999999999999999999999999999999999999999999999999986656666666889999999


Q ss_pred             HhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        275 VLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ++|.++   +.+.++.|+++|.+++...
T Consensus       537 ~LL~sg---d~~~q~~Aa~AL~nLi~~~  561 (2102)
T PLN03200        537 WLLKNG---GPKGQEIAAKTLTKLVRTA  561 (2102)
T ss_pred             HHHhCC---CHHHHHHHHHHHHHHHhcc
Confidence            999998   9999999999999997544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.80  E-value=2.1e-17  Score=185.97  Aligned_cols=189  Identities=15%  Similarity=0.090  Sum_probs=164.7

Q ss_pred             CHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +.+.+..+...|.+++.. .+....+...||+|+|+.+|.+++..+|..|+|+|++++.+|+.++..+++.|++|+|+++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            458899999999999965 5667889999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-h-----------
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-Q-----------  259 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-~-----------  259 (361)
                      |.+ ++..+++.|+|+|+|++.+.+..+..+.++|++++|+++|++++.++|..|+|+|.+|+.... .           
T Consensus       497 L~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLls  575 (2102)
T PLN03200        497 LET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLG  575 (2102)
T ss_pred             HcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcC
Confidence            997 577999999999999999765555556578999999999999999999999999999974311 0           


Q ss_pred             ----H---------------------HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        260 ----V---------------------KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       260 ----~---------------------~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                          .                     .+.....|+++.|+++|+++   +..+++.|.++|.++...+++.
T Consensus       576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~  643 (2102)
T PLN03200        576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSRQDL  643 (2102)
T ss_pred             CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCChHH
Confidence                0                     11112468999999999999   9999999999999999887654

>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity

Probab=99.69  E-value=5.3e-17  Score=128.27  Aligned_cols=89  Identities=24%  Similarity=0.369  Sum_probs=74.1

Q ss_pred             CCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy14164         46 PSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDN  123 (361)
Q Consensus        46 ~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~  123 (361)
                      +++|+|||||||+||.++.....   ....+..+++|+|..++|..++  ++|+++||+++.+|.+++.+.++|+.||++
T Consensus         2 ~~~l~~LLkWsI~ns~~~~~~~~---~~~~~~~~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~   78 (92)
T PF08609_consen    2 DPNLNGLLKWSIENSTTSASDAP---PSAEQPDEERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDN   78 (92)
T ss_pred             CHHHHHHHHHHHHcCCCCccccc---cCcCCchhhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            46899999999999954433222   1122233467999999999998  899999999999999999999999999999


Q ss_pred             HHHhhcCcccHHHH
Q psy14164        124 LSDYICSIDYANDF  137 (361)
Q Consensus       124 L~~lve~idna~~~  137 (361)
                      |++|||+|||||++
T Consensus        79 le~LVE~IDNANnl   92 (92)
T PF08609_consen   79 LEELVENIDNANNL   92 (92)
T ss_pred             HHHHHHcccccccC
Confidence            99999999999974

Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].

>KOG4224|consensus

Probab=99.69  E-value=1.8e-15  Score=143.79  Aligned_cols=193  Identities=19%  Similarity=0.305  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC--hHHHHHHh
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTS  191 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g--~l~~Ll~L  191 (361)
                      ...+-.|.+.|..+.+.-+|.+.++..||+|.||.+|.+.+.++|..++.+|++++- ....+..+.+.|  ++|.|++|
T Consensus       181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L  259 (550)
T KOG4224|consen  181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL  259 (550)
T ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence            456778899999999999999999999999999999999999999999999999985 466788888888  99999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      .++ +++.++-.|..||.+++.+.. -+..+.++|++|.++++|+++..++....+++|.|+.- .|-....+++.|++.
T Consensus       260 md~-~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~  336 (550)
T KOG4224|consen  260 MDD-GSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLR  336 (550)
T ss_pred             HhC-CChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchh
Confidence            997 567999999999999998655 45778899999999999999999999999999999876 455666788999999


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccC
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLE  312 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~  312 (361)
                      +|+.+|..+  ++.+++-+|..+|++++..+...+...+..
T Consensus       337 pLVrlL~~~--dnEeiqchAvstLrnLAasse~n~~~i~es  375 (550)
T KOG4224|consen  337 PLVRLLRAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRES  375 (550)
T ss_pred             HHHHHHhcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence            999999987  134599999999999998775544444333

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.63  E-value=1.1e-14  Score=118.79  Aligned_cols=119  Identities=20%  Similarity=0.297  Sum_probs=111.8

Q ss_pred             HHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164        136 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       136 ~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      .|++.|+++.|+.+|.+++..+|..|+++|++++.++|.....+++.|++|.|+++|.+ ++..++..|+|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence            36788999999999999999999999999999999999999999999999999999997 57899999999999999998


Q ss_pred             hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      +.....+...|+++.|+++|+..+.+++..|+|++.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            8888888889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4224|consensus

Probab=99.54  E-value=3.1e-13  Score=128.62  Aligned_cols=291  Identities=17%  Similarity=0.211  Sum_probs=212.3

Q ss_pred             cccccCCCccccccccCCCCCCCCCCCCCCCHHH-HHHHHhhcCCCCCCCCCC----cccccCCCCHHhHHHHHHHHHhh
Q psy14164         18 RLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQD-LLRYAVEAGSRSRAQEAP----NINRAASMNEANRGFLLDALNSM   92 (361)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-LL~w~~~~s~~~~~~~~~----~~~~~~~~s~e~~~~L~eal~~~   92 (361)
                      .+--||+-.-++= .+..+|+.     ..+|..| ||++....-.....-++.    =.+-.+.-+..-+..-..|++.+
T Consensus       162 kiA~sGaL~pltr-Lakskdir-----vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI  235 (550)
T KOG4224|consen  162 KIARSGALEPLTR-LAKSKDIR-----VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI  235 (550)
T ss_pred             hhhhccchhhhHh-hcccchhh-----HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence            3456777666554 88888887     5666554 445443321111110100    00001111222222223333333


Q ss_pred             cC----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHH
Q psy14164         93 MV----------NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAA  162 (361)
Q Consensus        93 ~~----------~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa  162 (361)
                      .+          .+.+++...+..+.+  .++..|..|--+|..+..+..+...++..|++|.+++||+++.-.+-....
T Consensus       236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasV  313 (550)
T KOG4224|consen  236 AVDRRARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASV  313 (550)
T ss_pred             hhhHHHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence            22          344455555554444  345788888889999999999999999999999999999999998888999


Q ss_pred             HHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHH
Q psy14164        163 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKL  242 (361)
Q Consensus       163 ~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v  242 (361)
                      .||.|++- .|-+.-.+++.|.+.+|+++|+-..+++++-.|...|-+++..+......|++.|.++.++.++.+.+-.+
T Consensus       314 aCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv  392 (550)
T KOG4224|consen  314 ACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV  392 (550)
T ss_pred             HHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence            99998874 56666778999999999999997677789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh---HHHHhhccCcchHHHH
Q psy14164        243 VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP---EAQSLCRLEPLNLKFK  319 (361)
Q Consensus       243 ~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~---~~~~~~~~~~l~l~~~  319 (361)
                      |.+...+|+-|+-+ ...+.++.+.|+++.|+.++.+.   +.+++..+..+|.++..+-.   ..++...+|..++...
T Consensus       393 qseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~---s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~  468 (550)
T KOG4224|consen  393 QSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSE---SEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGR  468 (550)
T ss_pred             HHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCcc---chhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHH
Confidence            99888888887764 46889999999999999999988   99999999999999987543   2333345555444444


Q ss_pred             HH
Q psy14164        320 LN  321 (361)
Q Consensus       320 Le  321 (361)
                      |-
T Consensus       469 L~  470 (550)
T KOG4224|consen  469 LA  470 (550)
T ss_pred             HH
Confidence            43

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.52  E-value=3.5e-13  Score=109.89  Aligned_cols=118  Identities=22%  Similarity=0.374  Sum_probs=110.6

Q ss_pred             HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       178 ~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      .+++.|+++.|++++.+ .+..++..++++|++++.+++.....+++.|+++.|+.+|.+++.+++..|+|++++|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            36789999999999996 46799999999999999998999999999999999999999999999999999999999988


Q ss_pred             chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      +.....+.+.|+++.++.+|..+   +..+++.++.+|.+|+
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence            88888899999999999999998   9999999999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160|consensus

Probab=99.34  E-value=3.5e-10  Score=108.34  Aligned_cols=184  Identities=17%  Similarity=0.253  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC
Q psy14164        116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD  195 (361)
Q Consensus       116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~  195 (361)
                      .....-+...+.++......++..+  ++....-..+.+.+=+..|..-|-..+.+ -.+...++..|++.+++.++.+ 
T Consensus        60 ~~~~~~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~-  135 (342)
T KOG2160|consen   60 LMQAHTEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLEN-  135 (342)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcC-
Confidence            3344444455666666666666666  22222222456778889999999999965 4456678999999999999987 


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164        196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  274 (361)
Q Consensus       196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv  274 (361)
                      ++..+|+.|+|.|+.++++||..+..|++.||++.|+..|.++ +..+++||.++|++|+.+++.....+...++...|.
T Consensus       136 ~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~  215 (342)
T KOG2160|consen  136 SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLR  215 (342)
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHH
Confidence            6789999999999999999999999999999999999999865 789999999999999999999999999999999999


Q ss_pred             HhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        275 VLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      ..|.++ +.+..++.+++..+..+++..+.
T Consensus       216 ~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  216 DVLQSN-NTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHHHcC-CcchHHHHHHHHHHHHHHHhhhh
Confidence            999983 22788999999999999987654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.33  E-value=4.5e-10  Score=115.24  Aligned_cols=185  Identities=15%  Similarity=0.240  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+....+++.|..+.+..+-...  ..+..+.|...|.|+++.||..+++.|+++++++....+.+.+.++++.++.++
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L  128 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL  128 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence            345666777777777776654443  234567888899999999999999999999999999888999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  272 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~  272 (361)
                      .+ ++..|.+.|+.+|++++.+ +.....+++.+++..|..++...+..+|.++..++..++..+++....+.+.|+++.
T Consensus       129 ~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~  206 (503)
T PF10508_consen  129 RD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL  206 (503)
T ss_pred             cC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence            86 6889999999999999984 566777888999999999999888899999999999999999999999999999999


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      ++..|.++   |.-++..++..|..|+. ++..
T Consensus       207 ll~eL~~d---DiLvqlnalell~~La~-~~~g  235 (503)
T PF10508_consen  207 LLKELDSD---DILVQLNALELLSELAE-TPHG  235 (503)
T ss_pred             HHHHhcCc---cHHHHHHHHHHHHHHHc-ChhH
Confidence            99999998   99999999999999998 5443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.30  E-value=5.4e-10  Score=117.47  Aligned_cols=220  Identities=12%  Similarity=0.129  Sum_probs=173.2

Q ss_pred             HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC
Q psy14164        118 IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN  197 (361)
Q Consensus       118 ~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~  197 (361)
                      ..++..|..+.++..+...+++-|+++.|+++|.+++.++...+..+|..++-. .+++..+.+.|++++|++++.+ .+
T Consensus       267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s-~~  344 (708)
T PF05804_consen  267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS-EN  344 (708)
T ss_pred             HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC-CC
Confidence            345666888999999999999999999999999999999999999999999964 5589999999999999999997 46


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhc
Q psy14164        198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI  277 (361)
Q Consensus       198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL  277 (361)
                      ..++..++.+|.|++-+ +.....+++.|.+|.|+.+|.+++  .+.-+..++++|+. ++..+..+...++++.++++|
T Consensus       345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~L  420 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQML  420 (708)
T ss_pred             HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHH
Confidence            78999999999999974 556889999999999999998654  44557888888876 567889999999999999986


Q ss_pred             cCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHH-----------HHHhhcChhhh-HH-HHHHHHHHH
Q psy14164        278 DIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNF-----------IKEKHAGNEVY-HK-ELEYVNSVL  344 (361)
Q Consensus       278 ~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~-----------~~~~l~~~~e~-~~-e~~~~~~il  344 (361)
                      -..+  +..+...++.++.+++...+.+...|...  +|..+++.           .++++..|+.. +. -..|+..|+
T Consensus       421 l~~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~--gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~  496 (708)
T PF05804_consen  421 LENS--EEEVQLELIALLINLALNKRNAQLMCEGN--GLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLA  496 (708)
T ss_pred             HhCC--CccccHHHHHHHHHHhcCHHHHHHHHhcC--cHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            5531  55666667888888888877776667443  34445542           35566556422 22 245777777


Q ss_pred             HHh
Q psy14164        345 TEV  347 (361)
Q Consensus       345 ~~~  347 (361)
                      ..+
T Consensus       497 ~~v  499 (708)
T PF05804_consen  497 KIV  499 (708)
T ss_pred             HHh
Confidence            654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.19  E-value=3.8e-09  Score=98.96  Aligned_cols=196  Identities=19%  Similarity=0.223  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  176 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q  176 (361)
                      .+.+++.+..|... .+...+..|+-.+.......-+..-+.+.||++.+..+|.++++.+|..|+++|.|++.+ .+.|
T Consensus        11 ~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence            55668888888763 344556666666666655556667788999999999999999999999999999999865 5556


Q ss_pred             HHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        177 NFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       177 ~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      ..+-.  .++.+++...+ ..+..++..++.+|.+|+..+. ....+  .+.++.++++|.+++.++|..+..++.+|+.
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            65532  57777775443 3456899999999999987543 23333  4689999999999999999999999999976


Q ss_pred             CCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        256 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       256 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                       +|...+.++..+++..++.++...  .+.++...++..+.+|...-
T Consensus       164 -np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  164 -NPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENI  207 (254)
T ss_pred             -CHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhh
Confidence             677888888889999999999875  25677888888888886543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.16  E-value=1.9e-09  Score=100.91  Aligned_cols=157  Identities=20%  Similarity=0.246  Sum_probs=125.4

Q ss_pred             HCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        139 KMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       139 ~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ..+.++.|+.+|++ .++.++..|..++|+.+ ..|..|+.+.+.|+++.+..+|.. +++.+|.+|++||.|++.+.+ 
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh-
Confidence            34568999999984 68999999999999986 578999999999999999999997 688999999999999987543 


Q ss_pred             hHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        218 CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       218 ~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      .+..+ +..+-..+-..+.++ +..+|..+..+|.+|+..+ +....+.  +.++.++.+|.++   +..++.+++.+|.
T Consensus        87 n~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G---~~~~k~~vLk~L~  159 (254)
T PF04826_consen   87 NQEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG---SEKTKVQVLKVLV  159 (254)
T ss_pred             hHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence            33433 333333334444444 7899999999999997643 3344443  4799999999998   9999999999999


Q ss_pred             HHHhcChHH
Q psy14164        297 SLIKDSPEA  305 (361)
Q Consensus       297 ~L~~~~~~~  305 (361)
                      +|+......
T Consensus       160 nLS~np~~~  168 (254)
T PF04826_consen  160 NLSENPDMT  168 (254)
T ss_pred             HhccCHHHH
Confidence            999766543

>KOG4199|consensus

Probab=99.15  E-value=2.4e-08  Score=94.88  Aligned_cols=219  Identities=14%  Similarity=0.220  Sum_probs=168.1

Q ss_pred             hHHHHHHH--HHhhcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHCCCHHH
Q psy14164         81 NRGFLLDA--LNSMMVNV---GAELEKIIKTLKENQDQKDICIGALDNLSDYICSI----------DYANDFLKMGGLPV  145 (361)
Q Consensus        81 ~~~~L~ea--l~~~~~~~---~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i----------dna~~~~~~Gg~~~  145 (361)
                      -.+|++.|  +.++...+   ...++-.+.+|.....+ ...-.+.+.|..|+-+-          ..|+.|.+.|++..
T Consensus       167 ~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~  245 (461)
T KOG4199|consen  167 TLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTA  245 (461)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHH
Confidence            35777776  33332111   22233333455554444 44455667777766443          45788999999999


Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHH---HHHHHHHHHHHHhcCChhhHHH
Q psy14164        146 LQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       146 Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~---v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      |+..|.. -++++...++-+|+.++-+++.|+. +.+.|++..|++++.+..+..   ..+.+++.|+.++. +......
T Consensus       246 L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~  323 (461)
T KOG4199|consen  246 LTEALQAGIDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKST  323 (461)
T ss_pred             HHHHHHccCCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999875 5689999999999999998888875 789999999999998643333   44677888888764 6777889


Q ss_pred             HHhhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      +++.||.+.++.++.  ++++.|-..++.+|+-|+-..|+....+++.|.-...++-++.. -....++..+.+++.+|+
T Consensus       324 IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P~~a~vQrnac~~IRNiv  402 (461)
T KOG4199|consen  324 IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-PVAAQVQRNACNMIRNIV  402 (461)
T ss_pred             HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence            999999999999874  56899999999999999999999999999999999999988764 124679999999999999


Q ss_pred             hcCh
Q psy14164        300 KDSP  303 (361)
Q Consensus       300 ~~~~  303 (361)
                      ..+.
T Consensus       403 ~rs~  406 (461)
T KOG4199|consen  403 VRSA  406 (461)
T ss_pred             Hhhh
Confidence            8774

>KOG4199|consensus

Probab=99.12  E-value=6.4e-09  Score=98.67  Aligned_cols=180  Identities=13%  Similarity=0.201  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC-CCHHHH---HHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG-SDPELR---WRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s-~~~~vr---~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      +....++..|..+.-.-+....+...||+..|++++.+ .+..+|   ..++..|..++ +++.+...+++.|+++.++.
T Consensus       257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence            44455555555554344556678889999999999976 445555   55666677676 57779999999999999999


Q ss_pred             hhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164        191 SIE-HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSM  267 (361)
Q Consensus       191 LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~  267 (361)
                      ++. +..++.|...++-+||-+|--.|..-..|++.||-...++.|+..  ...+|+.|||+|.|++..+.+++..++..
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~  415 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN  415 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence            764 557789999999999999988888888999999999999999865  57899999999999999988899999876


Q ss_pred             CcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       268 g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      | ++.|+..-+..   +......+-.+|.-|-
T Consensus       416 G-iE~Li~~A~~~---h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  416 G-IEKLIRTAKAN---HETCEAAAKAALRDLG  443 (461)
T ss_pred             c-HHHHHHHHHhc---CccHHHHHHHHHHhcC
Confidence            6 56777776666   6677766666666554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.07  E-value=4.6e-08  Score=100.53  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=147.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+...|.-++..|..++...+.+ ..+...+.++.++.+|.+++..|...|+.+|..++.+.+.. +.+++.+.++.|..
T Consensus        89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~  167 (503)
T PF10508_consen   89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKS  167 (503)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHH
Confidence            34578888999999988776654 44566788999999999999999999999999999876655 45778888999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      ++.+ ++..+|.++...+..++..++.....+...|.++.++..|.++|.-+|..|+-+++.|+. .++..+++.+.|++
T Consensus       168 l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~  245 (503)
T PF10508_consen  168 LMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIF  245 (503)
T ss_pred             HHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHH
Confidence            9986 466899999999999999999999999999999999999999999999999999999998 78889999999999


Q ss_pred             HHHHHhccCC
Q psy14164        271 EQMCVLIDIE  280 (361)
Q Consensus       271 ~~Lv~lL~~~  280 (361)
                      +.|+++|...
T Consensus       246 ~~L~~~l~~~  255 (503)
T PF10508_consen  246 DKLSNLLQDS  255 (503)
T ss_pred             HHHHHHHhcc
Confidence            9999999875

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.07  E-value=3.3e-08  Score=104.11  Aligned_cols=179  Identities=13%  Similarity=0.157  Sum_probs=147.3

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+.++.++.-|..|.-..+|+..+.+.|.++.|++++.+++.+++..|+++|.|++. ++..+..+++.|++|.|+.+|
T Consensus       303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL  381 (708)
T PF05804_consen  303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELL  381 (708)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHh
Confidence            4567777888888888888899999999999999999999999999999999999995 567899999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      ..+   ..+..++..|.+++. .+.....|...+.++.|+++|- .++.++...+.+++.||+.. +...+.+.+.|+++
T Consensus       382 ~d~---~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~  456 (708)
T PF05804_consen  382 KDP---NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQ  456 (708)
T ss_pred             CCC---chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHH
Confidence            853   355667888888887 4567788888899999999754 56788899999999999885 45667888888899


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      .|+...-..   ...+   .+..|.+++++.+
T Consensus       457 ~L~~ra~~~---~D~l---LlKlIRNiS~h~~  482 (708)
T PF05804_consen  457 SLMKRALKT---RDPL---LLKLIRNISQHDG  482 (708)
T ss_pred             HHHHHHHhc---ccHH---HHHHHHHHHhcCc
Confidence            999876544   2222   4467888888774

>KOG1293|consensus

Probab=98.92  E-value=3.4e-08  Score=100.55  Aligned_cols=172  Identities=16%  Similarity=0.146  Sum_probs=136.8

Q ss_pred             cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy14164        131 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC  210 (361)
Q Consensus       131 idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~  210 (361)
                      ++++..|-..-....+..+..+.+..++.+|+.++-+++..-...+.-+-...+..+|++++. +++..|...++.||.|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHH
Confidence            566666554433444444556788999999999999888655544444445578999999996 4777999999999999


Q ss_pred             HhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH-HHHhCCcHHHHHHhccCCCCCChhHHH
Q psy14164        211 LVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNE  289 (361)
Q Consensus       211 l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~d~~~~e  289 (361)
                      ++..+.+-...|+..||+..|...+.+.++.+|.++.|+++++..+..+... .+...=.-..++.+.+.+   +..++|
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqe  522 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQE  522 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHH
Confidence            9999999999999999999999999999999999999999999988554443 333333355666777777   999999


Q ss_pred             HHHHHHHHHHhcChHHH
Q psy14164        290 HLLSALASLIKDSPEAQ  306 (361)
Q Consensus       290 ~al~aL~~L~~~~~~~~  306 (361)
                      .++..|.+++.++.+.+
T Consensus       523 q~fqllRNl~c~~~~sv  539 (678)
T KOG1293|consen  523 QCFQLLRNLTCNSRKSV  539 (678)
T ss_pred             HHHHHHHHhhcCcHHHH
Confidence            99999999998876543

>KOG1517|consensus

Probab=98.92  E-value=3.5e-08  Score=104.42  Aligned_cols=213  Identities=16%  Similarity=0.198  Sum_probs=187.1

Q ss_pred             HHHHHHHHhhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcC
Q psy14164         83 GFLLDALNSMM---------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEG  152 (361)
Q Consensus        83 ~~L~eal~~~~---------~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s  152 (361)
                      -|+.|-|.++.         ..+.+++--.+++|.+.    -.++.||.-|..+++-.-+|-++. ..|.+|.+++||+|
T Consensus       448 ~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS  523 (1387)
T KOG1517|consen  448 PFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS  523 (1387)
T ss_pred             chHHHHHHHHHHHHHhccccCCChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc
Confidence            57777766664         45688888999998873    568999999999998888898875 66889999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV  230 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~  230 (361)
                      +-.++|.--+.+-+.|..-+|.||..+++.++-..+++.|...  -+++-|.-|++.|+.++++++.++++....+-+..
T Consensus       524 ~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i  603 (1387)
T KOG1517|consen  524 SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI  603 (1387)
T ss_pred             chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHH
Confidence            9999999999999999999999999999999999999999852  24588999999999999999999999999999999


Q ss_pred             HHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        231 LLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       231 Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..+.|.++ ..-+++-+|-+|.-|..+.++.+=.=++.+..+.|+.+|+.+   -+++|..|+.||..++...
T Consensus       604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~---vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP---VPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence            99999986 689999999999999988777766666778899999999988   8999999999999999863

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.91  E-value=2.4e-07  Score=89.51  Aligned_cols=188  Identities=16%  Similarity=0.255  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCC------CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMG------GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF  184 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~G------g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~  184 (361)
                      ..++...-.|--+.+++.+. .....|....      -+.++++++.+++.-++..|+.+++.+....+....... .+.
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~  147 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA  147 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence            34455666666677776544 4455555522      589999999999999999999999999887766555433 567


Q ss_pred             HHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh------cc-CCHHHHHHHHHHHHHHh
Q psy14164        185 LNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI------QS-KKEKLVIKSCFLIACLC  254 (361)
Q Consensus       185 l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL------~s-~~~~v~~kA~~ll~~L~  254 (361)
                      ++.+++.+.+.   .+..++.-|+.+|+++.+ .+.....|.+.+|++.|..+|      .+ .+..++=.+++++.-|.
T Consensus       148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS  226 (312)
T PF03224_consen  148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS  226 (312)
T ss_dssp             HHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence            88888887752   233567899999999998 677889999999999999999      22 36899999999999886


Q ss_pred             cCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        255 TDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       255 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      . +++....+.+.++|+.|+++++..  ...++...++.+|.|++...+.
T Consensus       227 F-~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~l~Nl~~~~~~  273 (312)
T PF03224_consen  227 F-EPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAILRNLLSKAPK  273 (312)
T ss_dssp             T-SHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSST
T ss_pred             c-CHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHHHHHHHhccHH
Confidence            6 577888899999999999999875  2678899999999999987763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1048|consensus

Probab=98.77  E-value=7.6e-08  Score=99.98  Aligned_cols=196  Identities=17%  Similarity=0.223  Sum_probs=149.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH--H
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--S  175 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~--~  175 (361)
                      +.+++..|......  .+..|.--+.-++. .|++  .....+|||+.||.+|.|+..+|+.+||++|-|++-++..  .
T Consensus       235 lpe~i~mL~~q~~~--~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  235 LPEVISMLMSQDPS--VQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cHHHHHHHhccChh--hhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            45666777654332  33333333444443 3333  4678999999999999999999999999999999987665  7


Q ss_pred             HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--------------CHH
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--------------KEK  241 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--------------~~~  241 (361)
                      .-.+.+.+++|.++++|.+..|.++++.....|.||.-.  ...+..+-..+++.|.+-+-.+              +..
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence            888999999999999999877889999999999999864  3445555567777776654321              357


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC---CCCChhHHHHHHHHHHHHHh
Q psy14164        242 LVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       242 v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~~  300 (361)
                      +-..++++|.|+.+...+.++.+.++ |.|..|+..+.+-   +.-|.+..|.++..|.++.-
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY  452 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY  452 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence            88899999999999888899999876 7799998887732   23367788999888888763

>KOG0168|consensus

Probab=98.77  E-value=3.6e-07  Score=95.27  Aligned_cols=204  Identities=14%  Similarity=0.221  Sum_probs=158.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHH---HHCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDF---LKMGGLPVLQPLLEGS-DPELRWRAAETVADIVQ  170 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~---~~~Gg~~~Lv~LL~s~-~~~vr~~Aa~~Lg~iaq  170 (361)
                      ..-.+|++.+.-|...+ ++...+.|+-+|.+++- +.|-..+   ----.+|.|+.||+++ +.+|...||++|.+++.
T Consensus       164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e  241 (1051)
T KOG0168|consen  164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE  241 (1051)
T ss_pred             cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence            44558899998888854 44555666655555442 2222221   1112478899999985 57999999999999999


Q ss_pred             cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHH
Q psy14164        171 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI  250 (361)
Q Consensus       171 nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll  250 (361)
                      --|..-..++++++||.|+.-|..-.-..|...++.||=-|.|.++.   +++.+||+...+..|.==..-+|++|....
T Consensus       242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaia  318 (1051)
T KOG0168|consen  242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIA  318 (1051)
T ss_pred             hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998666545678999999999999998875   578899999999888777889999999999


Q ss_pred             HHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc---ChHHHHh
Q psy14164        251 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD---SPEAQSL  308 (361)
Q Consensus       251 ~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~---~~~~~~~  308 (361)
                      +|.|.. .++--..+.  ..+|.|..+|...   |.+..|.++-++..++..   .|+.+++
T Consensus       319 aN~Cksi~sd~f~~v~--ealPlL~~lLs~~---D~k~ies~~ic~~ri~d~f~h~~~kLdq  375 (1051)
T KOG0168|consen  319 ANCCKSIRSDEFHFVM--EALPLLTPLLSYQ---DKKPIESVCICLTRIADGFQHGPDKLDQ  375 (1051)
T ss_pred             HHHHhcCCCccchHHH--HHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhcccChHHHHH
Confidence            999987 444444443  5799999999998   999999999999999864   4555544

>KOG1048|consensus

Probab=98.74  E-value=1.7e-07  Score=97.37  Aligned_cols=198  Identities=17%  Similarity=0.212  Sum_probs=146.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh--hHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE--CLK  220 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~--~~~  220 (361)
                      +|..+.+|.|.++.++..|+.-|-.++-.+.+....+-+.|+|+.|+.||.+ ....|++.|++||=|++-+...  +.-
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence            6778899999999999999999999999999999999999999999999998 5679999999999999998766  788


Q ss_pred             HHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC----CC-------CChhHH
Q psy14164        221 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE----DA-------LDTEMN  288 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~-------~d~~~~  288 (361)
                      ++.++||++.++++|.. .|..|++.++.++.||.+. +..+..++. ..+..|-+.+-.+    .+       .+.++-
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            89999999999999997 5999999999999999775 445555543 3445554444333    00       124566


Q ss_pred             HHHHHHHHHHHhcChHH---HHhhccCcchHHHHHHHHHHhhcChhhh-HHHHHHHHHHHHHh
Q psy14164        289 EHLLSALASLIKDSPEA---QSLCRLEPLNLKFKLNFIKEKHAGNEVY-HKELEYVNSVLTEV  347 (361)
Q Consensus       289 e~al~aL~~L~~~~~~~---~~~~~~~~l~l~~~Le~~~~~l~~~~e~-~~e~~~~~~il~~~  347 (361)
                      ..+..+|.++...+.++   ...|.    ++.+.|=..++..-+...+ +--++-|..|+.+.
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~----GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL  450 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECD----GLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL  450 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhcc----chHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence            78888999998866554   44552    3444444444422111111 12355555555543

>PRK09687 putative lyase; Provisional

Probab=98.63  E-value=9.3e-07  Score=84.19  Aligned_cols=169  Identities=13%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  180 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~  180 (361)
                      +..+..|.+  .+...+..|+..|..+-.          -..++.+..+++++++.+|..|+++||.+-.... .     
T Consensus        26 ~~L~~~L~d--~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----   87 (280)
T PRK09687         26 DELFRLLDD--HNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----   87 (280)
T ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----
Confidence            334444544  344677777777765421          1246777888889999999999999998743111 1     


Q ss_pred             hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh----HHH----------------HH------hhCcHHHHHHh
Q psy14164        181 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC----LKE----------------FI------KRDGFSVLLRC  234 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~----~~~----------------f~------~~ggi~~Lv~l  234 (361)
                      ....++.|..++.++++..||..|+.+|+.++......    ...                +.      +...++.|+.+
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~  167 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL  167 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            12357778877666678889999999998875432200    000                00      11235666666


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      |.+++..||..|+++|..+...++         .+++.|+.+|...   +.++|..|..+|..+-
T Consensus       168 L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~---~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        168 LKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK---NEEIRIEAIIGLALRK  220 (280)
T ss_pred             hcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC---ChHHHHHHHHHHHccC
Confidence            766666777777777766622222         3566677777776   7778887777776643

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.60  E-value=2.1e-05  Score=78.73  Aligned_cols=198  Identities=16%  Similarity=0.175  Sum_probs=140.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc-cHHHHHHC-----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSID-YANDFLKM-----GGLPVLQPLLEGSDPELRWRAAETVADIVQNNP  173 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id-na~~~~~~-----Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~  173 (361)
                      .+-.+..+.. ...++...-.|--+.+++.... -+..|++.     .-+.+++++|.+++.-+...|+.+|+.++...+
T Consensus        55 ~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          55 VKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence            3333444443 3334555555666666665422 23556654     468889999999999999999999999987544


Q ss_pred             HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHH
Q psy14164        174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIA  251 (361)
Q Consensus       174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~  251 (361)
                      .........-.+..|...|.+..+...+.-|+.+++.+.+. +..+..|.+.+|++.|+.+|+..  +..++=++++++.
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            32221111113445566666433456777888999999995 55668899999999999999863  6789999999999


Q ss_pred             HHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        252 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       252 ~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      -|..+. +....+...++|+.|+++++..  .-.++...++.+|.|++..+
T Consensus       213 lLSF~~-~~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~  260 (429)
T cd00256         213 LLTFNP-HAAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKR  260 (429)
T ss_pred             HHhccH-HHHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcc
Confidence            887754 4666777889999999999875  25678888899999999754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2122|consensus

Probab=98.53  E-value=3.3e-06  Score=92.31  Aligned_cols=229  Identities=14%  Similarity=0.188  Sum_probs=167.1

Q ss_pred             CHHhHHHHHHHHHhhc---CCH--HHHHHHHHHHHhcCC-------------------CCHHHHH-HHHHHHHHhhcCcc
Q psy14164         78 NEANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQ-------------------DQKDICI-GALDNLSDYICSID  132 (361)
Q Consensus        78 s~e~~~~L~eal~~~~---~~~--~~~mk~~l~~L~~~~-------------------~~~~~~~-~Al~~L~~lve~id  132 (361)
                      +.|-|+....||.++.   +|+  ..+.++++..|....                   .+++..+ .|+-.|..+.-+-+
T Consensus       251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE  330 (2195)
T KOG2122|consen  251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE  330 (2195)
T ss_pred             hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH
Confidence            5566777888888886   333  223444444443110                   2234444 78888888877778


Q ss_pred             cHHHHHHCCCHHHHHHhhcC------------CCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhccCCC--
Q psy14164        133 YANDFLKMGGLPVLQPLLEG------------SDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSN--  197 (361)
Q Consensus       133 na~~~~~~Gg~~~Lv~LL~s------------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~~~~~--  197 (361)
                      ....+..+||+..|-.||.-            .+..+|..|..+|.|++-+...+...+. ..|.+..+|..|.++++  
T Consensus       331 hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL  410 (2195)
T KOG2122|consen  331 HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL  410 (2195)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH
Confidence            88999999999999887751            1357999999999999877665554443 33667777766665431  


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhcCChhhHHHHHhh-CcHHHHHHhh
Q psy14164        198 -----------------------------------------TTVQVKSLYAVSCLVRENEECLKEFIKR-DGFSVLLRCI  235 (361)
Q Consensus       198 -----------------------------------------~~v~~~Al~ALS~l~r~~~~~~~~f~~~-ggi~~Lv~lL  235 (361)
                                                               +...+..++||-||..|+..+...|... |.+..|+..|
T Consensus       411 ~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L  490 (2195)
T KOG2122|consen  411 LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL  490 (2195)
T ss_pred             HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence                                                     1233457888889999988888888875 5689999999


Q ss_pred             ccC----CHHHHHHHHHHHHHHhc---CCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164        236 QSK----KEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       236 ~s~----~~~v~~kA~~ll~~L~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~  308 (361)
                      ...    ..++...|-..|.|..+   .....|+.+.+.+++..|+..|++.   .-.+.-+++.+||||...+|...+.
T Consensus       491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~DQq~  567 (2195)
T KOG2122|consen  491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPEDQQM  567 (2195)
T ss_pred             cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHHHHHH
Confidence            743    56777777777766543   3567899999999999999999998   8889999999999999999876554


Q ss_pred             h
Q psy14164        309 C  309 (361)
Q Consensus       309 ~  309 (361)
                      .
T Consensus       568 L  568 (2195)
T KOG2122|consen  568 L  568 (2195)
T ss_pred             H
Confidence            3

>KOG4500|consensus

Probab=98.47  E-value=3.5e-06  Score=82.58  Aligned_cols=161  Identities=14%  Similarity=0.228  Sum_probs=126.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHH----hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFII----QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~----~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                      ...+..|+..+..|++.++ .|+..+..|.    .+|++.+|.++.++ ++..|......||+|+|..+..++..|...|
T Consensus        52 ~~~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg  129 (604)
T KOG4500|consen   52 MTASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLG  129 (604)
T ss_pred             eeccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence            3457789999999999998 4565555554    45778888888887 4789999999999999999999999999999


Q ss_pred             cHHHHHHhhccC-------CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        227 GFSVLLRCIQSK-------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       227 gi~~Lv~lL~s~-------~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      |-+.+++.|+..       ..+.-.-++.++.|..-++.+.+..+.+.|+++.|..++--+ -++....|..+-...+++
T Consensus       130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~-~qNaa~~e~ll~~f~nll  208 (604)
T KOG4500|consen  130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID-WQNAALTEKLLAPFFNLL  208 (604)
T ss_pred             CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc-cccHHHHHHHHhccccHH
Confidence            999999888742       347777788889988888899999999999999999887654 125677788888877777


Q ss_pred             hcC-hHHHHhhccCcc
Q psy14164        300 KDS-PEAQSLCRLEPL  314 (361)
Q Consensus       300 ~~~-~~~~~~~~~~~l  314 (361)
                      +.- ......|....+
T Consensus       209 s~~~e~~~~~~~d~sl  224 (604)
T KOG4500|consen  209 SFVCEMLYPFCKDCSL  224 (604)
T ss_pred             HHHHHhhhhhhccchH
Confidence            633 223445555443

>PRK09687 putative lyase; Provisional

Probab=98.46  E-value=7.3e-06  Score=78.10  Aligned_cols=158  Identities=15%  Similarity=0.105  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhc-------------------
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQN-------------------  171 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqn-------------------  171 (361)
                      .+...+..|.+.|.++-.... .    ..-.++.|..+ ++.+++.||..|+.+||.+...                   
T Consensus        66 ~d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~  140 (280)
T PRK09687         66 KNPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK  140 (280)
T ss_pred             CCHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC
Confidence            345677777777777543111 0    01146777766 6778889999999999987432                   


Q ss_pred             CHHHHHHHHh-------cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHH
Q psy14164        172 NPFSQNFIIQ-------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVI  244 (361)
Q Consensus       172 n~~~q~~v~~-------~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~  244 (361)
                      ++.++..++.       ..+++.|+.+|.+ ++..||..|+++|+.+.-+++         ..++.|+.+|.+.+..||.
T Consensus       141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~  210 (280)
T PRK09687        141 STNVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRI  210 (280)
T ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHH
Confidence            2233333332       1367888888875 566888888888888722222         3577899999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        245 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       245 kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      .|++.+..+-.  +         .+++.|++.|..+   +  ++..+..+|..+-.
T Consensus       211 ~A~~aLg~~~~--~---------~av~~Li~~L~~~---~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        211 EAIIGLALRKD--K---------RVLSVLIKELKKG---T--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHHHHccCC--h---------hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence            99999987532  2         5799999999976   4  66677788777663

>KOG0946|consensus

Probab=98.45  E-value=2.2e-05  Score=81.88  Aligned_cols=203  Identities=18%  Similarity=0.203  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc------c-----------HHHHHHCC-CHHHHHHhhcCCCHHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSID------Y-----------ANDFLKMG-GLPVLQPLLEGSDPELR  158 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id------n-----------a~~~~~~G-g~~~Lv~LL~s~~~~vr  158 (361)
                      +..|+-.+.+|...-.+.+....+|+.+.-++..-|      +           |..|++.- -+..|+..+.+.+-.||
T Consensus        60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR  139 (970)
T KOG0946|consen   60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR  139 (970)
T ss_pred             HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence            557888888887755666777778888887765443      2           34466654 47788889999999999


Q ss_pred             HHHHHHHHHHhhc-CHHHHHHHHhc-ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164        159 WRAAETVADIVQN-NPFSQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ  236 (361)
Q Consensus       159 ~~Aa~~Lg~iaqn-n~~~q~~v~~~-g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~  236 (361)
                      ..|...|.++..+ -++.|++++.. -++..|+.+|.. ..+-+|-.+++-|+.++++++..++-+.=.|.+..|..++.
T Consensus       140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe  218 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE  218 (970)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999998765 45678887766 579999999985 56789999999999999999998888777899999999987


Q ss_pred             c----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh------h----HHHHHHHHHHHHHh
Q psy14164        237 S----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT------E----MNEHLLSALASLIK  300 (361)
Q Consensus       237 s----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~------~----~~e~al~aL~~L~~  300 (361)
                      .    +..-|...+.+++.+|+..+.+....|.+.+.|+.|.++|+.+..+|.      .    -...+|.++..++.
T Consensus       219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs  296 (970)
T KOG0946|consen  219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS  296 (970)
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence            4    235788999999999999999999999999999999999988743331      1    12345666666664

>KOG1293|consensus

Probab=98.42  E-value=3e-05  Score=79.52  Aligned_cols=153  Identities=12%  Similarity=0.146  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHHHHHHhh---cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164        112 DQKDICIGALDNLSDYI---CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lv---e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L  188 (361)
                      .+.+..-+||..+..+.   ...++.  +-...|..+||++|..|+..|...+..+|.|++-.-...+..|+..|++..|
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l  466 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL  466 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence            33455555555544443   333333  6667799999999999999999999999999999888889999999999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM  267 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~  267 (361)
                      .+++.+ .+.++|.+++|+|-++.-+.... +.++...=+...|..+...++..||..+..+++||+.+..+..+.+++.
T Consensus       467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            999996 67899999999999999876543 4455555577788888999999999999999999999877777777754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.42  E-value=6.7e-07  Score=59.80  Aligned_cols=41  Identities=17%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164        172 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       172 n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r  213 (361)
                      ||.+++.+++.|++|+|+++|.+ .+..+++.|+|||+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence            57888999999999999999996 688999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PTZ00429 beta-adaptin; Provisional

Probab=98.33  E-value=0.00015  Score=77.60  Aligned_cols=169  Identities=12%  Similarity=0.112  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHHHHHhh-cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lv-e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +...|..|+..+..+. .-.|..      -+++-+++++.+++.++|...--.|.+.+..+|+..-.     ++..|.+=
T Consensus        45 ~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KD  113 (746)
T PTZ00429         45 DSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQD  113 (746)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHH
Confidence            4466677776655544 222322      24777888999999999999999999998877764322     45666776


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      +.+ +++.+|.-|+.++|+|.-  +....     -.+..+.++|.+.++-||++|+.++..+...+|+   .+.+.|+++
T Consensus       114 l~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~  182 (746)
T PTZ00429        114 TTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKK  182 (746)
T ss_pred             cCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHH
Confidence            664 678999999999998742  22222     2356788888889999999999999999876664   344568888


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      .|.++|...   |+.+..+|+.+|..+...+|..+
T Consensus       183 ~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~~l  214 (746)
T PTZ00429        183 DLVELLNDN---NPVVASNAAAIVCEVNDYGSEKI  214 (746)
T ss_pred             HHHHHhcCC---CccHHHHHHHHHHHHHHhCchhh
Confidence            899998877   89999999999999987766544

>KOG2171|consensus

Probab=98.31  E-value=7.5e-05  Score=80.81  Aligned_cols=154  Identities=14%  Similarity=0.207  Sum_probs=119.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      +.+-.+|+|++..-|.+|+.+|+.++.+.++.-...+. .+++..+..|+. +.+.||..|+.||+-+..+..+-.+...
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            33444778999999999999999999987654433222 467777777874 7889999999999999999988888888


Q ss_pred             hhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCc-h-HHHHHHhCCcHH-HHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        224 KRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN-Q-VKQVLLSMGMVE-QMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       224 ~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~-~-~~~~l~~~g~i~-~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      ..-.++.|+..+.++ +.+|+..|+.++-++....+ + ...++  .+++. .+..++.++   ...++|.++.+|..++
T Consensus       429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~---~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSS---KPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence            788888999999887 68999999999999987633 2 22232  14455 333455555   8899999999999999


Q ss_pred             hcChH
Q psy14164        300 KDSPE  304 (361)
Q Consensus       300 ~~~~~  304 (361)
                      .....
T Consensus       504 ~AA~~  508 (1075)
T KOG2171|consen  504 DAAQE  508 (1075)
T ss_pred             HHHhh
Confidence            76643

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.31  E-value=7.2e-06  Score=75.19  Aligned_cols=189  Identities=17%  Similarity=0.203  Sum_probs=122.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcCc---ccHHHHHHC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164        108 KENQDQKDICIGALDNLSDYICSI---DYANDFLKM--GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT  182 (361)
Q Consensus       108 ~~~~~~~~~~~~Al~~L~~lve~i---dna~~~~~~--Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~  182 (361)
                      ...+.+=+.+..|+..|..++...   +....|...  ..+..+...+.+....|...|+.+|+.++..-...-+.++ .
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~   93 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D   93 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence            343455688999999999988654   334444321  3345677788888888999999999999976443322222 3


Q ss_pred             ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164        183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  262 (361)
Q Consensus       183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~  262 (361)
                      ..+|.|++.+.+ +...++..|..+|-.|+.+.+.. ..++    ++.+...+.+.+..+|..++.++..++...+....
T Consensus        94 ~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~-~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYS-PKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcH-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            489999999986 56789999999999999976611 1111    45667788899999999999999998876441111


Q ss_pred             HHHh----CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        263 VLLS----MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       263 ~l~~----~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      .+..    ..+++.+..+|...   ++++|+.|-.++..+.+..|+..
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hhcccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCHhh
Confidence            1111    34678888999988   99999999999999987776543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2122|consensus

Probab=98.31  E-value=6.6e-06  Score=90.02  Aligned_cols=172  Identities=16%  Similarity=0.185  Sum_probs=141.2

Q ss_pred             CcccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc-ChHHHHHHhhccCC---CHHHHHH-
Q psy14164        130 SIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQT-DFLNLLLTSIEHDS---NTTVQVK-  203 (361)
Q Consensus       130 ~idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-g~l~~Ll~LL~~~~---~~~v~~~-  203 (361)
                      ++.++..|...|-+..|+.+ |......-....+.+|-|++.+..++...|..- |+|.-|+.+|.-+.   ...+... 
T Consensus       426 D~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsa  505 (2195)
T KOG2122|consen  426 DSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESA  505 (2195)
T ss_pred             cccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcC
Confidence            45667789999999999986 554444455567777778877777777776554 89999999997531   1233333 


Q ss_pred             --HHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC
Q psy14164        204 --SLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED  281 (361)
Q Consensus       204 --Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~  281 (361)
                        .+.-+|+++..+++-.+...+++-+..|++.|++.+..|...+|..|+||...+++.++.|.+.|.|..|.+|+++. 
T Consensus       506 GGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-  584 (2195)
T KOG2122|consen  506 GGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-  584 (2195)
T ss_pred             ccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-
Confidence              34456777888888888888999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCChhHHHHHHHHHHHHHhcChH
Q psy14164        282 ALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       282 ~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                        +..+.+-+..+|.|++..-|.
T Consensus       585 --hkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  585 --HKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             --hhhhhhhHHHHHHHHhcCCch
Confidence              999999999999999988764

>KOG0168|consensus

Probab=98.27  E-value=7.1e-05  Score=78.63  Aligned_cols=239  Identities=14%  Similarity=0.131  Sum_probs=175.5

Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164        107 LKENQDQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF  184 (361)
Q Consensus       107 L~~~~~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~  184 (361)
                      |.+.+...+-...|+.+|-+|+|-.-. ...++..++||.|+. |+.-..-+|-++++.+|-.|.+.+|.   +++++|+
T Consensus       219 LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~  295 (1051)
T KOG0168|consen  219 LLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGA  295 (1051)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhccc
Confidence            333334457788899999999886543 345678899999987 77888999999999999999998875   7899999


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchH
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQV  260 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~  260 (361)
                      +...+..|+= -+..++++|+...+|+|..- +....-|  ...+|.|..+|+..|.++...+|-++..++.+   .++.
T Consensus       296 l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k  372 (1051)
T KOG0168|consen  296 LSAVLSYLDF-FSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK  372 (1051)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence            9999998874 34689999999999999874 3344444  46899999999999999999999999999875   6778


Q ss_pred             HHHHHhCCcHHHHHHhccCC-CCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhc------Chh--
Q psy14164        261 KQVLLSMGMVEQMCVLIDIE-DALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA------GNE--  331 (361)
Q Consensus       261 ~~~l~~~g~i~~Lv~lL~~~-~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~------~~~--  331 (361)
                      .+.+.+.|+|....+||... ..-+..+..-..++|..+..+||...+.-..  +++.+.|.+.+.--.      .++  
T Consensus       373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k--~~I~~~L~~il~g~s~s~nas~~~~l  450 (1051)
T KOG0168|consen  373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLK--LDIADTLKRILQGYSKSANASLHELL  450 (1051)
T ss_pred             HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHH--hhHHHHHHHHHhccCcCccccccccc
Confidence            88999999999999999876 1112345566788888888888865432211  233344444432111      011  


Q ss_pred             --hhHHHHHHHHHHHHHhcCCCCC
Q psy14164        332 --VYHKELEYVNSVLTEVFEEDSP  353 (361)
Q Consensus       332 --e~~~e~~~~~~il~~~f~~~~~  353 (361)
                        -.++.|+....|++.+|--+.+
T Consensus       451 ~r~Pnel~e~~sl~~eLlp~~p~e  474 (1051)
T KOG0168|consen  451 SRSPNELYELTSLIIELLPCLPVE  474 (1051)
T ss_pred             ccCcHHHHHHHHHHheeecCCccc
Confidence              2355677777777766665554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.24  E-value=0.00024  Score=73.80  Aligned_cols=197  Identities=18%  Similarity=0.164  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHH----HHHHCCCHHHHHHhhcC-------CCHHHHHHHHHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAN----DFLKMGGLPVLQPLLEG-------SDPELRWRAAETV  165 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~----~~~~~Gg~~~Lv~LL~s-------~~~~vr~~Aa~~L  165 (361)
                      ...+++++..|....  ++.|..+|--+..++...|...    .+.+.=|+..|-+||++       +....+.-|..+|
T Consensus         4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL   81 (543)
T ss_pred             hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            456899999999864  6899999999999998766321    24455568999999987       5578899999999


Q ss_pred             HHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHH
Q psy14164        166 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIK  245 (361)
Q Consensus       166 g~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~k  245 (361)
                      +..++ .|.....--=.+-+|.|+..+.+..+..+...|+.+|.+++ .++.+.+.|++.|+++.|.+.+.+ ....+..
T Consensus        82 ~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~  158 (543)
T PF05536_consen   82 AAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEI  158 (543)
T ss_pred             HHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence            99998 45443111112579999999987555588999999999999 689999999999999999999987 6677888


Q ss_pred             HHHHHHHHhcCCc-h----HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        246 SCFLIACLCTDNN-Q----VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       246 A~~ll~~L~~~~~-~----~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      |..++.+++.... +    ....+  ..++..+.......   ....+-.++..|..++...|
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~---~~~~kfell~~L~~~L~~~~  216 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSF---HGEDKFELLEFLSAFLPRSP  216 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhh---ccchHHHHHHHHHHhcCcCC
Confidence            9999999887532 1    11111  14566677777766   56666677888888887774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.16  E-value=8.9e-06  Score=62.87  Aligned_cols=86  Identities=19%  Similarity=0.357  Sum_probs=68.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        143 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       143 ~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      ++.|++.| +++++.+|..|+++||.+-  ++         .++|.|+.++.+ ++..||..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKD-EDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence            57899988 8999999999999999442  11         469999999975 78899999999999872         


Q ss_pred             HHhhCcHHHHHHhhccC-CHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIA  251 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~  251 (361)
                        ....++.|.+++.++ +..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              234788889988876 5667888887764

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=98.15  E-value=4.9e-05  Score=71.04  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR  233 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~  233 (361)
                      ...+...|+++|--++-.+|.++..+.....+..|+.+|+...+..++..++.+|.++..+++.++..|-+.+|+..++.
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            34467779999999999999999999999999999999976567799999999999999999999999999999999999


Q ss_pred             hhccC--CHHHHHHHHHHHHHHhc
Q psy14164        234 CIQSK--KEKLVIKSCFLIACLCT  255 (361)
Q Consensus       234 lL~s~--~~~v~~kA~~ll~~L~~  255 (361)
                      ++++.  +..+|.|..-++.-.+.
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            99865  78999888877765444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0946|consensus

Probab=98.15  E-value=0.0001  Score=76.92  Aligned_cols=211  Identities=20%  Similarity=0.284  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH-
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP-  173 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~-  173 (361)
                      .+-+.+.+.-+.+ +.-.+++..|+..|.-+...  +. -.+-.-|+++|+..|..  .++++-..|+.++.++..+.+ 
T Consensus        21 aETI~kLcDRves-sTL~eDRR~A~rgLKa~srk--YR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVES-STLLEDRRDAVRGLKAFSRK--YR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHH--HH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            3344444444443 12247787887777776542  22 23445689999998864  689999999999999987753 


Q ss_pred             -------H--------HHHHHHh-cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhh-CcHHHHHHhh
Q psy14164        174 -------F--------SQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-LKEFIKR-DGFSVLLRCI  235 (361)
Q Consensus       174 -------~--------~q~~v~~-~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~-ggi~~Lv~lL  235 (361)
                             .        ..+.+++ .+.+..|+..+.+ .+-.||..++--||++.++-|.. ++.++.. -|++.|+.+|
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                   2        2334443 3788889999987 57899999999999999876554 4445444 4999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCC-hhHHHHHHHHHHHHHhcChHHHHhhccC
Q psy14164        236 QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD-TEMNEHLLSALASLIKDSPEAQSLCRLE  312 (361)
Q Consensus       236 ~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d-~~~~e~al~aL~~L~~~~~~~~~~~~~~  312 (361)
                      .+...-+|-.|..++..|+..++.....+.=.+++..|..+++.....| --+.+-|+..|.+|+..+..-...++.+
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            9999999999999999999999988888888899999999998652112 2577889999999998775444444443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=0.00017  Score=74.09  Aligned_cols=213  Identities=19%  Similarity=0.197  Sum_probs=140.3

Q ss_pred             CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC
Q psy14164         76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS  153 (361)
Q Consensus        76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~  153 (361)
                      .-+.+.++...=++..+...+.+.+.-++..+...-  .+...+..||..|..+. ..+.+..+     ++.+.++|.++
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~  126 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDP  126 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCC
Confidence            445566777777788887555555555666554322  33567888998888866 44545443     78889999999


Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR  233 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~  233 (361)
                      ++-||..|+.++..+.+.+|..-   -.. .++.|.++|.+ +++.|+..|+.++..+ +.++.....++ ..-+..|.+
T Consensus       127 ~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~  199 (526)
T PF01602_consen  127 SPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQ  199 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccC-CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhh
Confidence            99999999999999999887632   223 69999999975 7889999999999999 44444311111 112223333


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCCchHH-------------------------HHH--------HhCCcHHHHHHhccCC
Q psy14164        234 CIQSKKEKLVIKSCFLIACLCTDNNQVK-------------------------QVL--------LSMGMVEQMCVLIDIE  280 (361)
Q Consensus       234 lL~s~~~~v~~kA~~ll~~L~~~~~~~~-------------------------~~l--------~~~g~i~~Lv~lL~~~  280 (361)
                      ++...++-++.++..++..++...+...                         ..+        .-..+++.|+.+|.++
T Consensus       200 ~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~  279 (526)
T PF01602_consen  200 LLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSS  279 (526)
T ss_dssp             HHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSS
T ss_pred             cccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcc
Confidence            3333444444444444443333211111                         000        2245788999999988


Q ss_pred             CCCChhHHHHHHHHHHHHHhcChH
Q psy14164        281 DALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                         +..++-.++.+|..++...+.
T Consensus       280 ---~~nvr~~~L~~L~~l~~~~~~  300 (526)
T PF01602_consen  280 ---DPNVRYIALDSLSQLAQSNPP  300 (526)
T ss_dssp             ---SHHHHHHHHHHHHHHCCHCHH
T ss_pred             ---cchhehhHHHHHHHhhcccch
Confidence               899999999999999988744

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171|consensus

Probab=98.14  E-value=0.00017  Score=78.19  Aligned_cols=195  Identities=15%  Similarity=0.152  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKM--GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFS  175 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~--Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~  175 (361)
                      .+.+.+..+.. +.+-..|..||-+|....|-  ....+.+.  ..++.++..|+.+++.||..|+.+||.++++ -|..
T Consensus       348 ~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  348 PLFEALEAMLQ-STEWKERHAALLALSVIAEG--CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            34555555544 34557888999898888762  22332221  2366667789999999999999999999987 4455


Q ss_pred             HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH-HHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS-VLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~-~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      |... ..-++|.|+..+++.....|+..|+.|+=|..-.++...-.=+--+.+. .+..+++++...+|..++.+|++.+
T Consensus       425 qk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  425 QKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            5544 3457778999999877778999999999988877665433322234455 5555677889999999999999998


Q ss_pred             cC-CchHHHHHHhCCcHHHHHHhccCCC-CCChhHHHHHHHHHHHHH
Q psy14164        255 TD-NNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSALASLI  299 (361)
Q Consensus       255 ~~-~~~~~~~l~~~g~i~~Lv~lL~~~~-~~d~~~~e~al~aL~~L~  299 (361)
                      .. ...+..++-  -+++.|.+.|.+.+ .....+|-+++.++..+.
T Consensus       504 ~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  504 DAAQEKFIPYFD--RLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHhhhhHhHHH--HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            75 444555542  46778888888762 122345666666666555

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.12  E-value=0.00015  Score=70.10  Aligned_cols=175  Identities=18%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC----CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s----~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L  188 (361)
                      +.-....|+..|..++..-+....-...+.++.++..|.+    ++.+++..|+.+++++. ..+..+..+.+.|+++.|
T Consensus       118 D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l  196 (312)
T PF03224_consen  118 DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPL  196 (312)
T ss_dssp             SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHH
Confidence            3345566777777776554433332223456777777664    56678899999999999 578899999999999999


Q ss_pred             HHhh------ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCch-H
Q psy14164        189 LTSI------EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQ-V  260 (361)
Q Consensus       189 l~LL------~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~-~  260 (361)
                      ..+|      .+.....++..++.++-.++- ++.....+...+-++.|+++++.. -+||.+-+...+.||+...+. .
T Consensus       197 ~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~  275 (312)
T PF03224_consen  197 FDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSN  275 (312)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTH
T ss_pred             HHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHH
Confidence            9999      444566889999999999987 566778898899999999999865 799999999999999987554 7


Q ss_pred             HHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164        261 KQVLLSMGMVEQMCVLIDIEDALDTEMNEH  290 (361)
Q Consensus       261 ~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~  290 (361)
                      ...++..|+++.+-.|... +-.|.++.+-
T Consensus       276 ~~~mv~~~~l~~l~~L~~r-k~~Dedl~ed  304 (312)
T PF03224_consen  276 IELMVLCGLLKTLQNLSER-KWSDEDLTED  304 (312)
T ss_dssp             HHHHHHH-HHHHHHHHHSS---SSHHHHHH
T ss_pred             HHHHHHccHHHHHHHHhcC-CCCCHHHHHH
Confidence            7888888877666555443 2347777664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500|consensus

Probab=98.11  E-value=0.00032  Score=69.19  Aligned_cols=181  Identities=13%  Similarity=0.121  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164        117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L  188 (361)
                      ..-.++.|....|+-.-.-.|.+.|.+.-++.+++.        +.-.+-..++..+.-+.++++..|..+..-..+..+
T Consensus       241 ~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~  320 (604)
T KOG4500|consen  241 DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFL  320 (604)
T ss_pred             hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHH
Confidence            344577788888776666778899999999998875        223455678888888888888777654433389999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHH
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQV  263 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~  263 (361)
                      +..+.+ .+......+.-||+|.+|... ....|++.+-+..|+.+|..     ++-++|-.++.+++||+- ....+..
T Consensus       321 ~sw~~S-~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~  397 (604)
T KOG4500|consen  321 ESWFRS-DDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAH  397 (604)
T ss_pred             HHHhcC-CchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhh
Confidence            999997 466899999999999999654 45678889999999999864     478899999999999987 4567889


Q ss_pred             HHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        264 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       264 l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      ++..|+.+.++..|+..   .+.+.-+.+.++..+...-+
T Consensus       398 ~~~aGvteaIL~~lk~~---~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  398 FAPAGVTEAILLQLKLA---SPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             ccccchHHHHHHHHHhc---CCcchHHHHHHHHHHHhchH
Confidence            99999999999999998   89999999999988886655

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.11  E-value=7.4e-06  Score=54.67  Aligned_cols=41  Identities=12%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      ++...+.+++.||++.|+.+|++++..+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2759|consensus

Probab=98.10  E-value=0.00071  Score=66.56  Aligned_cols=199  Identities=17%  Similarity=0.211  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHH-HH------HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND-FL------KMGGLPVLQPLLEGSDPELRWRAAETVADIV  169 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~-~~------~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~ia  169 (361)
                      .+..+-.+..++. ...++...-+|--+.++...-....+ |+      +--.+.+.+++|...+.-+...+.++|+.++
T Consensus        64 ~~~v~~fi~LlS~-~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   64 AQYVKTFINLLSH-IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHHhch-hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            3444444444444 44455555666666666543222222 21      1224899999999999999999999999998


Q ss_pred             hcCHHHH---HHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHH
Q psy14164        170 QNNPFSQ---NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVI  244 (361)
Q Consensus       170 qnn~~~q---~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~  244 (361)
                      ...+..-   +.-+.   ...|-.++.+..+......|+.+|..+.|. ++-+.+|..++|+..++..+.++  +..+|=
T Consensus       143 ~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY  218 (442)
T KOG2759|consen  143 CFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQY  218 (442)
T ss_pred             HhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHH
Confidence            8654221   11111   223334444434556778899999999995 55678899999999999999433  899999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        245 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       245 kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      ..+|++.-|+.+ |...+.+...+.|+.|..+++..  ...++...++.++.+++...|
T Consensus       219 qsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~  274 (442)
T KOG2759|consen  219 QSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGP  274 (442)
T ss_pred             HHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc
Confidence            999999988774 55667888889999999999875  256777888888999998775

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.09  E-value=8.4e-06  Score=57.83  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy14164        155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL  211 (361)
Q Consensus       155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l  211 (361)
                      +.||..|+|+||++++..+...+.++ ..++|.|+.+|.+ ++..||..|+|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            46899999999999998888776643 4699999999986 4569999999999976

...

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.0004  Score=71.23  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=45.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      +..+.+=|.|+++.+|..|+++|++++  ++..-+.     +++.+.+++.+ +++.||++|+.|+..+.+.+|..... 
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~-  151 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVED-  151 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHH-
Confidence            344444445555555555555555544  2322221     34444444443 34455555555555555444432211 


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                        . -++.+..+|.+++..|+..|+.++..+
T Consensus       152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             --H-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence              0 244555555555555555555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.02  E-value=0.00039  Score=76.54  Aligned_cols=59  Identities=10%  Similarity=-0.051  Sum_probs=32.8

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        228 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      ++.|..++++++..||..|+.+|..+-...          .++..++..|.++   +..+|..|+.+|..+-
T Consensus       777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~---d~~VR~~Aa~aL~~l~  835 (897)
T PRK13800        777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS---AWQVRQGAARALAGAA  835 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC---ChHHHHHHHHHHHhcc
Confidence            345555555555566665555555542210          1224456666666   6677777777776553

>KOG3678|consensus

Probab=98.00  E-value=8.7e-05  Score=73.67  Aligned_cols=158  Identities=15%  Similarity=0.211  Sum_probs=132.6

Q ss_pred             HCCCHHHHHHhhcCCCH--HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164        139 KMGGLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       139 ~~Gg~~~Lv~LL~s~~~--~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      .-||+..|++++.+++.  .||..|+++|..|..  ..+.+.+...| +..++.+..........+..+..|.+|-.|+.
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            35899999999999875  569999999998864  44667777766 66666666655567899999999999999999


Q ss_pred             hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      ..-+.++..||+..++.-.+..++.+.+.++.++.|++-. ....++.+++....+.|.-|-.+.   |.-+|-+|..++
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~AClAV  331 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHACLAV  331 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHHHHHH
Confidence            9889999999999999989999999999999999987765 667888899999988888887776   888899999998


Q ss_pred             HHHHhcC
Q psy14164        296 ASLIKDS  302 (361)
Q Consensus       296 ~~L~~~~  302 (361)
                      ..|+...
T Consensus       332 ~vlat~K  338 (832)
T KOG3678|consen  332 AVLATNK  338 (832)
T ss_pred             hhhhhhh
Confidence            8887643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.99  E-value=0.00039  Score=76.49  Aligned_cols=126  Identities=10%  Similarity=0.038  Sum_probs=89.7

Q ss_pred             HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        139 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       139 ~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                      +++..+.|+.+|.++++.||..|+.+|+.+....         ...++.|..++.+ +++.||..|+.+|+.+-.  ++.
T Consensus       740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~--~~~  807 (897)
T PRK13800        740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGD-PDPLVRAAALAALAELGC--PPD  807 (897)
T ss_pred             cccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcC-CCHHHHHHHHHHHHhcCC--cch
Confidence            3344455555555555556655555555554321         1237788888875 578999999999988732  211


Q ss_pred             HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       219 ~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                              .++.|+..|.+++..||..|+.+|..+-.           ...++.|+.+|..+   +..+|..|+.+|..+
T Consensus       808 --------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~---~~~VR~~A~~aL~~~  865 (897)
T PRK13800        808 --------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP---HLDVRKAAVLALTRW  865 (897)
T ss_pred             --------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC---CHHHHHHHHHHHhcc
Confidence                    12457888999999999999999987642           13468999999998   999999999999886

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.96  E-value=4.8e-05  Score=61.21  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      +|....++|||++-.|+.+|+.+.+.|++|.++....- +.++.+|..|+|||=+++.+++.++..+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46778999999999999999999999999999998653 35789999999999999999999976554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PTZ00429 beta-adaptin; Provisional

Probab=97.91  E-value=0.0042  Score=66.66  Aligned_cols=193  Identities=11%  Similarity=0.058  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHH
Q psy14164         81 NRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPEL  157 (361)
Q Consensus        81 ~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~v  157 (361)
                      +++-+++.+..++  .|-....-+++..+.+  .+.+.|.-..--+..+.+ +.|.+     +=.+..|.+=|.++++-+
T Consensus        49 kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~I  121 (746)
T PTZ00429         49 KKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPVV  121 (746)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHHH
Confidence            4555555555554  3334445555554433  344555444444444433 22211     114667778888999999


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164        158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS  237 (361)
Q Consensus       158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s  237 (361)
                      |..|+++++++-  .+..-+.     +++++.+.+.+ .++-||++|+.|+..+-+.++.   .+.+.+-++.|.++|.+
T Consensus       122 RaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D  190 (746)
T PTZ00429        122 RALAVRTMMCIR--VSSVLEY-----TLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND  190 (746)
T ss_pred             HHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence            999999999875  3443333     46677788875 7889999999999999887664   33445667789999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      .+..|+..|+.++..+...++...  -...+.+..|+..|..-   +.-.+..++.+|.
T Consensus       191 ~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~  244 (746)
T PTZ00429        191 NNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC---NEWGQLYILELLA  244 (746)
T ss_pred             CCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Confidence            999999999999999987665432  23345677777777655   5556666666663

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.89  E-value=3.6e-05  Score=59.42  Aligned_cols=88  Identities=15%  Similarity=0.237  Sum_probs=69.3

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHH
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL  264 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l  264 (361)
                      ||.|++.|.++++..+|..|+++|+.+-   .+        ..++.|+.++++++..||..|++++..+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            6889999965688999999999999441   11        34789999999999999999999999772          


Q ss_pred             HhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       265 ~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                       ....++.|.+++.+++  +..+|..|..+|.
T Consensus        60 -~~~~~~~L~~~l~~~~--~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDD--DEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-S--SHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCC--cHHHHHHHHhhcC
Confidence             1347889999998761  4556888888873

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.75  E-value=0.0031  Score=63.34  Aligned_cols=184  Identities=16%  Similarity=0.215  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~--~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      .+-...++..|..++..-+....|.+.+|+++|+.+|+..  +..++=.++-||--++=+.+ ......+.+.++.|+.+
T Consensus       158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i  236 (429)
T cd00256         158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDI  236 (429)
T ss_pred             cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHH
Confidence            3455566677888887778888899999999999999763  44666666666666665433 55566678999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCCh----h--h-----------------------------------------------
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENE----E--C-----------------------------------------------  218 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~----~--~-----------------------------------------------  218 (361)
                      +.....+.|.+-++.++-|++..+.    .  .                                               
T Consensus       237 ~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf  316 (429)
T cd00256         237 LKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF  316 (429)
T ss_pred             HHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9977777787888888888876320    0  0                                               


Q ss_pred             ---------------------------HHHHHhhC--cHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC
Q psy14164        219 ---------------------------LKEFIKRD--GFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG  268 (361)
Q Consensus       219 ---------------------------~~~f~~~g--gi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g  268 (361)
                                                 ...|-+.+  .+..|+++|. ++|+.+..-||+=|..++...|..+..+.+.|
T Consensus       317 D~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg  396 (429)
T cd00256         317 DEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG  396 (429)
T ss_pred             HHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC
Confidence                                       12222222  1244555563 44666666677777777777788888888999


Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      +=..++.++.++   |++++-.||.|+..|..+
T Consensus       397 ~K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         397 GKQRVMRLLNHE---DPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             cHHHHHHHhcCC---CHHHHHHHHHHHHHHHHh
Confidence            999999999999   999999999999888643

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.74  E-value=6.5e-05  Score=53.19  Aligned_cols=54  Identities=15%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                      .+|..|+|+|++++.+.+.....+. ...++.|+.+|.+++..||..|+|+|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            6899999999999988887777654 68899999999999999999999999865

...

>KOG4646|consensus

Probab=97.73  E-value=0.00044  Score=58.32  Aligned_cols=122  Identities=17%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV  230 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~  230 (361)
                      +..+.+-+++..-=|+|.+ -+|.+-..+.+..++..++..|.. +++.+...++.+|+|+|-+ +.+.+-+.+++|++.
T Consensus        27 ~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~pl  103 (173)
T KOG4646|consen   27 TTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPL  103 (173)
T ss_pred             HhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCce
Confidence            3467777877777777777 478889999999999999999996 6889999999999999985 556677778999999


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHH
Q psy14164        231 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV  275 (361)
Q Consensus       231 Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~  275 (361)
                      ++.+++++...+.-.|+.++..|+..+...+..+..--++..+-.
T Consensus       104 ii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen  104 IIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             EEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            999999999999999999999998887777877765555444433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.71  E-value=0.0015  Score=56.68  Aligned_cols=127  Identities=14%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             cHHHHHHCCCHHHHHHhhcCCC------HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHH
Q psy14164        133 YANDFLKMGGLPVLQPLLEGSD------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSL  205 (361)
Q Consensus       133 na~~~~~~Gg~~~Lv~LL~s~~------~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al  205 (361)
                      .|..|++.||+..|+++++++.      .++...++.+.-.+....- +.-..++...+..++..++... +..+...|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            4788999999999999998755      4777888888888887653 3334666678888999888644 678999999


Q ss_pred             HHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        206 YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       206 ~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                      .-|=+++-+++.....+-+.--++.|+..|+.++..+|.+|..++..|....++.
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            9999999988877778877778999999999999999999999999999874443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.64  E-value=0.00012  Score=48.11  Aligned_cols=39  Identities=28%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q psy14164        132 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ  170 (361)
Q Consensus       132 dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq  170 (361)
                      +++..+.+.||+++|+++|.+++++++..|+|+|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467788899999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1062|consensus

Probab=97.60  E-value=0.008  Score=63.42  Aligned_cols=188  Identities=13%  Similarity=0.131  Sum_probs=137.8

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       147 v~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                      .+=|+|++.-|...|+-+||+++  +|+..     ..+.|-.-+++++ .++.+|+||+-|.-.++|.-|...+.|+   
T Consensus       113 knDL~s~nq~vVglAL~alg~i~--s~Ema-----rdlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f~---  181 (866)
T KOG1062|consen  113 KNDLNSSNQYVVGLALCALGNIC--SPEMA-----RDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHFV---  181 (866)
T ss_pred             HhhccCCCeeehHHHHHHhhccC--CHHHh-----HHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHhh---
Confidence            34567899999999999999998  34433     2367888889987 6889999999999999999888877775   


Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC----C--------CCCChhHHHHHHHH
Q psy14164        227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI----E--------DALDTEMNEHLLSA  294 (361)
Q Consensus       227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~----~--------~~~d~~~~e~al~a  294 (361)
                        +....+|.+.+.-|-.-+..++..+|..+++...++.+  +++.++..|+.    .        ...|+-+|..+|+.
T Consensus       182 --~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl  257 (866)
T KOG1062|consen  182 --IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL  257 (866)
T ss_pred             --HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence              45577888888999999999999999998888888776  66666655542    2        13367789999999


Q ss_pred             HHHHHhcChHHHH--------------hhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164        295 LASLIKDSPEAQS--------------LCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDS  352 (361)
Q Consensus       295 L~~L~~~~~~~~~--------------~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~  352 (361)
                      |.-+-++.+...+              ..++.+   ..+|-+..+.+...+.+..-+..+.+||-+|....|
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~G---nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAG---NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccch---hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence            9888887765432              112222   224445555555444556667788888888776555

>KOG1517|consensus

Probab=97.60  E-value=0.0011  Score=71.43  Aligned_cols=172  Identities=14%  Similarity=0.188  Sum_probs=137.8

Q ss_pred             CcccHHHHHHCCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHH
Q psy14164        130 SIDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY  206 (361)
Q Consensus       130 ~idna~~~~~~Gg~~~Lv~LL~s---~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~  206 (361)
                      +.....+++|-+|...+++.|..   -+++-|..|+.+|+.++.|-+.-|...++.+.+..-+..|..++.+-+|--++-
T Consensus       543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i  622 (1387)
T KOG1517|consen  543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI  622 (1387)
T ss_pred             CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence            34456789999999999998875   346899999999999999999999999999999999999997556788999999


Q ss_pred             HHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC----chHHHHH------------HhCCcH
Q psy14164        207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN----NQVKQVL------------LSMGMV  270 (361)
Q Consensus       207 ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~----~~~~~~l------------~~~g~i  270 (361)
                      +|+.|=.+++.++-.=.+.++...|..+|..+.+.||..|+|++..++.+.    ++.....            ++.-+.
T Consensus       623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~  702 (1387)
T KOG1517|consen  623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII  702 (1387)
T ss_pred             HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence            999999999998877788899999999999999999999999999999862    2211111            222222


Q ss_pred             ---HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        271 ---EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       271 ---~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                         ..++.+++..   .+-++..+.-+|..++..+..
T Consensus       703 ~~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~~  736 (1387)
T KOG1517|consen  703 KGLMSLLALVSDG---SPLVRTEVVVALSHFVVGYVS  736 (1387)
T ss_pred             hhHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhHH
Confidence               2555666655   777777777788887776654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.56  E-value=0.00047  Score=55.51  Aligned_cols=68  Identities=16%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164        200 VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSM  267 (361)
Q Consensus       200 v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~  267 (361)
                      +|...+..|+|++-.++..+..+.+.||++.++.+..-  .++-++..|.|+|.+|+.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            46778899999999999999999999999999988653  489999999999999999998887766543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2759|consensus

Probab=97.53  E-value=0.0055  Score=60.44  Aligned_cols=202  Identities=16%  Similarity=0.208  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH
Q psy14164         96 VGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP  173 (361)
Q Consensus        96 ~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~  173 (361)
                      +.+.-+..++.+.+.+.+.+-..-+..-|..++.-....-.|+...|+..++..|.|  .+-.++=+.+.|+--++-| |
T Consensus       153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~  231 (442)
T KOG2759|consen  153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P  231 (442)
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence            444444444444443333334444555555666555666778888999999998743  4556666677777777654 5


Q ss_pred             HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh------h-----------------------------
Q psy14164        174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE------C-----------------------------  218 (361)
Q Consensus       174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~------~-----------------------------  218 (361)
                      ...+.+...+.++.|..++.++..+.|-+-.+..+-|++-..+.      .                             
T Consensus       232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d  311 (442)
T KOG2759|consen  232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD  311 (442)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence            45566677899999999998766667777777777777655431      1                             


Q ss_pred             ---------------------------------------------HHHHHhhC--cHHHHHHhhccC-CHHHHHHHHHHH
Q psy14164        219 ---------------------------------------------LKEFIKRD--GFSVLLRCIQSK-KEKLVIKSCFLI  250 (361)
Q Consensus       219 ---------------------------------------------~~~f~~~g--gi~~Lv~lL~s~-~~~v~~kA~~ll  250 (361)
                                                                   ...|.+.+  .+..|+.+|++. |+.+-.-||+=|
T Consensus       312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DI  391 (442)
T KOG2759|consen  312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDI  391 (442)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhH
Confidence                                                         11111111  234556666654 466666777777


Q ss_pred             HHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        251 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       251 ~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ..+++..|..+..+.+.|+=..+++||.++   |++++-+|+.|+..|...
T Consensus       392 ge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  392 GEYVRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHHhh
Confidence            777788888999999999999999999999   999999999999888754

>KOG3678|consensus

Probab=97.50  E-value=0.0031  Score=62.95  Aligned_cols=175  Identities=15%  Similarity=0.251  Sum_probs=133.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +-..+..+..+......++.+...|+++. .-+|...+...| +..++.+-+ ...+++....+.+|+++-.+.....+.
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~  259 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR  259 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            45566667776655577888888777765 335556666666 666666543 466788899999999999998888888


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~-~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      +++.|++..++--+.. .++.+.+.++.||+|++-+ ....+..+++...-+-|.-+-.+.|.-+|-.||.+++-|++. 
T Consensus       260 Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-  337 (832)
T KOG3678|consen  260 LVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-  337 (832)
T ss_pred             HHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-
Confidence            9999999999888886 5789999999999988765 566777888888888888888888999999999999999874 


Q ss_pred             chHHHHHHhCCc---HHHHHHhcc
Q psy14164        258 NQVKQVLLSMGM---VEQMCVLID  278 (361)
Q Consensus       258 ~~~~~~l~~~g~---i~~Lv~lL~  278 (361)
                      .++...+.+.|.   +++++..+.
T Consensus       338 KE~E~~VrkS~TlaLVEPlva~~D  361 (832)
T KOG3678|consen  338 KEVEREVRKSGTLALVEPLVASLD  361 (832)
T ss_pred             hhhhHHHhhccchhhhhhhhhccC
Confidence            456666666664   445555443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.00044  Score=69.81  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164        158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS  237 (361)
Q Consensus       158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s  237 (361)
                      -.+++.+|-.++..-...+.-+.++.+..+|+++|+. ++..+.--+..+|+|.+-...+-+..|+..|.+..|+..+.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            3455666666766666666677788899999999996 666788889999999998888888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCc-hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        238 KKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       238 ~~~~v~~kA~~ll~~L~~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .|..+|.+..|.++++.-+.. ..+=.++..-.+..++.+...+   +-.+++.++..|.++.-++
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp---c~~vq~q~lQilrNftc~~  547 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP---CFKVQHQVLQILRNFTCDT  547 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc---ccccHHHHHHHHHhccccc
Confidence            999999999999999998843 3333555566678899998888   8999999999999998644

>PF05536 Neurochondrin: Neurochondrin

Probab=97.46  E-value=0.0065  Score=63.21  Aligned_cols=153  Identities=15%  Similarity=0.190  Sum_probs=122.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH---HHHHhcChHHHHHHhhccC------CCHHHHHHHHHHHHHHhc
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ---NFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q---~~v~~~g~l~~Ll~LL~~~------~~~~v~~~Al~ALS~l~r  213 (361)
                      +...+.+|++.+.+=|-.++-.+..++.+++..+   +.+.+.=+.+-|-+||.+.      +....+.-|+.-|++.|+
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            5667888999888889999999999999887533   3477776667777788762      234677889999999998


Q ss_pred             CChhhH--HHHHhhCcHHHHHHhhccCCH-HHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164        214 ENEECL--KEFIKRDGFSVLLRCIQSKKE-KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH  290 (361)
Q Consensus       214 ~~~~~~--~~f~~~ggi~~Lv~lL~s~~~-~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~  290 (361)
                      . |...  ..|  .+-+|.|++++.+.+. .+...+..++..++ ..++-++.+++.|.++.|+..+.+    .....+.
T Consensus        87 ~-~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~  158 (543)
T PF05536_consen   87 D-PELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN----QSFQMEI  158 (543)
T ss_pred             C-hhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh----CcchHHH
Confidence            3 3322  333  3679999999987766 99999999999999 578899999999999999999886    4677899


Q ss_pred             HHHHHHHHHhcCh
Q psy14164        291 LLSALASLIKDSP  303 (361)
Q Consensus       291 al~aL~~L~~~~~  303 (361)
                      ++.++.+++....
T Consensus       159 Al~lL~~Lls~~~  171 (543)
T PF05536_consen  159 ALNLLLNLLSRLG  171 (543)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887554

>KOG4413|consensus

Probab=97.44  E-value=0.003  Score=60.61  Aligned_cols=155  Identities=13%  Similarity=0.180  Sum_probs=124.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH--HHHH--HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNP--FSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~--~~q~--~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                      .|.|-.=|.+++..|+..||.-||.+..+.+  .+..  .+++.|.+|.++.++-. .+.+|.+.|+-.|+.|++ +|.+
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence            3444445778999999999999999998877  3333  35589999999999986 577999999999999999 7888


Q ss_pred             HHHHHhhCcHHH--HHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        219 LKEFIKRDGFSV--LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       219 ~~~f~~~ggi~~--Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      ...++..+-...  ++.+-...+.-+|.+...+|-.+.+-.|+...+..+.|++..|..-|+.++  |.-++..++..+.
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte--DtLVianciElvt  239 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE--DTLVIANCIELVT  239 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHH
Confidence            888887665543  344444556778888999999998889999999999999999988888742  7778888888888


Q ss_pred             HHHhc
Q psy14164        297 SLIKD  301 (361)
Q Consensus       297 ~L~~~  301 (361)
                      .++..
T Consensus       240 eLaet  244 (524)
T KOG4413|consen  240 ELAET  244 (524)
T ss_pred             HHHHH
Confidence            88753

>KOG1241|consensus

Probab=97.43  E-value=0.0033  Score=65.85  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH-
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK-  220 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~-  220 (361)
                      .||.+-.-+++|+-.-|..|+.+.|.+-.+-...+..-+-.+++|.++.++. +++.-++..+.|+++.++-+.+.... 
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhccc
Confidence            4555555778899999999999999999887666766677899999999999 57889999999999999998764422 


Q ss_pred             HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH-HHH----HHhCCcHH-HHHHhccCC---CCCChhHHHHH
Q psy14164        221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQV----LLSMGMVE-QMCVLIDIE---DALDTEMNEHL  291 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~-~~~----l~~~g~i~-~Lv~lL~~~---~~~d~~~~e~a  291 (361)
                      ...-..-++.++..|. +.+++-.++||++.+|+..-++. ...    ... .+.+ .+-.||+..   +..+..+|..+
T Consensus       444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA  521 (859)
T KOG1241|consen  444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA  521 (859)
T ss_pred             HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence            2222344555555554 57999999999999999531110 000    111 1222 222334433   12357899999


Q ss_pred             HHHHHHHHhcChHHH
Q psy14164        292 LSALASLIKDSPEAQ  306 (361)
Q Consensus       292 l~aL~~L~~~~~~~~  306 (361)
                      -.+|..++..+|+.+
T Consensus       522 YeALmElIk~st~~v  536 (859)
T KOG1241|consen  522 YEALMELIKNSTDDV  536 (859)
T ss_pred             HHHHHHHHHcCcHHH
Confidence            999999999998643

>KOG1222|consensus

Probab=97.41  E-value=0.022  Score=57.32  Aligned_cols=170  Identities=15%  Similarity=0.198  Sum_probs=128.0

Q ss_pred             HHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHH
Q psy14164        124 LSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV  202 (361)
Q Consensus       124 L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~  202 (361)
                      ...++-+-.|+.-++.-.|+..|+. -+++.++-+    ..++.|++|+....|..|++  .+.-|...++.+.+++.-.
T Consensus       450 ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~  523 (791)
T KOG1222|consen  450 CINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGL  523 (791)
T ss_pred             HHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHH
Confidence            4566777788888888889999987 577776643    57889999998889999987  4777888888777888999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164        203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      .++..++++.--.-+..+.+...+.+|.+...|+..  ...++-...-++...+. +......+...|+|+.++++|...
T Consensus       524 EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  524 ECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             HHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence            999999999875444444555678899999988864  45566666666666554 445566677889999999999875


Q ss_pred             CCCChhHHHHHHHHHHHHHhc
Q psy14164        281 DALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~~  301 (361)
                       -.|.++....+..+..++.+
T Consensus       603 -QeDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  603 -QEDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             -cccchHHHHHHHHHHHHHHH
Confidence             12566666677777777765

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.40  E-value=0.00043  Score=45.35  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=34.9

Q ss_pred             hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      .....+++.||++.|+++|++++.+++..|+|+|++|+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35678889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.36  E-value=0.018  Score=57.05  Aligned_cols=223  Identities=14%  Similarity=0.063  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      .+.+..++..+.+++.+.+.-..+.+.+.--.++..|..  .+..=|++|.+.+..+..-....+  -+..|++..++.+
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai  116 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI  116 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence            688999999999999998888899999876667777754  445568899999999876522211  2456889999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      ..+ +++..|.-|+-.|.-++-.+|.   .+..+||+..|++.+..+...+..-.+.++-++.. .|..|.++...--++
T Consensus       117 ae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~  191 (371)
T PF14664_consen  117 AEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLE  191 (371)
T ss_pred             HhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHH
Confidence            997 5669999999999999987775   47789999999999988777788888999999887 577787776543355


Q ss_pred             HHHHhccCC----CCCCh--hHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Q psy14164        272 QMCVLIDIE----DALDT--EMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLT  345 (361)
Q Consensus       272 ~Lv~lL~~~----~~~d~--~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~  345 (361)
                      .+..-+...    ...+.  +....+..++..+++.-+..+-.|.+...++    +..+..+..  .+.+..++.-.++-
T Consensus       192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l----ksLv~~L~~--p~~~ir~~Ildll~  265 (371)
T PF14664_consen  192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL----KSLVDSLRL--PNPEIRKAILDLLF  265 (371)
T ss_pred             HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH----HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            555444332    11122  4567788888888887776555554443344    334444432  23345555555555


Q ss_pred             HhcC
Q psy14164        346 EVFE  349 (361)
Q Consensus       346 ~~f~  349 (361)
                      ..|.
T Consensus       266 dllr  269 (371)
T PF14664_consen  266 DLLR  269 (371)
T ss_pred             HHHC
Confidence            5554

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.33  E-value=0.006  Score=60.48  Aligned_cols=184  Identities=15%  Similarity=0.145  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      ..+.+|+.||.-+..+++-.+.. .....|.+..++.+.++++..+|..|..+|..++--||.   .+..+||+..|++.
T Consensus        80 ~~~~ER~QALkliR~~l~~~~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~  155 (371)
T PF14664_consen   80 KNDVEREQALKLIRAFLEIKKGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA  155 (371)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence            44689999999998888643333 334667889999999999999999999999999999985   67889999999998


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-------CH--HHHHHHHHHHHHHhcCCchHHH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-------KE--KLVIKSCFLIACLCTDNNQVKQ  262 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-------~~--~v~~kA~~ll~~L~~~~~~~~~  262 (361)
                      +-. ....+....+.++-.+.- +|...+-+...--++.++..+.+.       +.  ..-..+..+|..+..+=+-..-
T Consensus       156 l~d-~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~  233 (371)
T PF14664_consen  156 LID-GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLY  233 (371)
T ss_pred             HHh-ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceee
Confidence            886 344566777777777764 454433333223455555444322       22  3556677788888775332222


Q ss_pred             HHHh-CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        263 VLLS-MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       263 ~l~~-~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      .-.. ...++.|+..|..+   ..++|+..+..+..+..-.+.
T Consensus       234 l~~~~~~~lksLv~~L~~p---~~~ir~~Ildll~dllrik~p  273 (371)
T PF14664_consen  234 LSMNDFRGLKSLVDSLRLP---NPEIRKAILDLLFDLLRIKPP  273 (371)
T ss_pred             eecCCchHHHHHHHHHcCC---CHHHHHHHHHHHHHHHCCCCC
Confidence            2222 25788999999999   999999999999999976543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.33  E-value=0.012  Score=53.69  Aligned_cols=184  Identities=13%  Similarity=0.111  Sum_probs=108.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcC--HHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        151 EGSDPELRWRAAETVADIVQNN--PFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn--~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                      .+.+-+.|..|+.-|..++.++  ......+++.  ..+..+...+.+ ....|.+.|+..|+.++++....+..++ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5677889999999999998887  2222333221  455677777765 3457999999999999987666666664 45


Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc-HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~-i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      .++.|+..+.++..-++..|..++..++...+-..      .+ +..+...+.+.   ++.+|..++..|..++...+..
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~  165 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSD  165 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch
Confidence            68899999999889999999999999998643111      12 45566677777   9999999999999999877621


Q ss_pred             HHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhc
Q psy14164        306 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF  348 (361)
Q Consensus       306 ~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f  348 (361)
                      ...+... ..+..++.-....+.  +...+.++++.+++..|+
T Consensus       166 ~~~l~~~-~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  166 SSVLQKS-AFLKQLVKALVKLLS--DADPEVREAARECLWALY  205 (228)
T ss_dssp             -GGG--H-HHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHH
T ss_pred             Hhhhccc-chHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Confidence            1111111 112222222222222  345677777777776654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.31  E-value=0.0062  Score=64.80  Aligned_cols=140  Identities=14%  Similarity=0.191  Sum_probs=96.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      ++-+++...+.+.++|...=--|-..++.+|.  .+++   +++.+.+=|.+ +++.+|-.|+.++|.+=      ..++
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d-~N~~iR~~AlR~ls~l~------~~el  124 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQD-PNEEIRGFALRTLSLLR------VKEL  124 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccC-CCHHHHHHHHHHHHhcC------hHHH
Confidence            56666766677888888777777788888873  2222   45666666765 67788888888888761      2233


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      + -..++++.+++.+++..||+.|+.+|..+-+-++   ....+.|.+..+..++...   |+.+...|+.+|..+-..
T Consensus       125 ~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~---dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         125 L-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS---DPIVIANALASLAEIDPE  196 (757)
T ss_pred             H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC---CchHHHHHHHHHHHhchh
Confidence            3 2346778888888888888888888888865443   4555667777777777776   777777777777665533

>KOG4646|consensus

Probab=97.25  E-value=0.0091  Score=50.52  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+.|.....+|+.+.-+.-|=.-+..+..+..++..|..++..+.+.+...|.|+|- .+.....+.+.+++|.++..+
T Consensus        30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l  108 (173)
T KOG4646|consen   30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL  108 (173)
T ss_pred             cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence            4577788888888888877777888899999999999999999999999999999995 677888999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      ++ +...+.-.|+.++--|+-+...-...+.
T Consensus       109 ss-p~e~tv~sa~~~l~~l~~~~Rt~r~ell  138 (173)
T KOG4646|consen  109 SS-PPEITVHSAALFLQLLEFGERTERDELL  138 (173)
T ss_pred             CC-ChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence            97 5667777788888888776655544444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.25  E-value=0.02  Score=59.23  Aligned_cols=138  Identities=16%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      ..++..-+ .+...+..|+..|......-|..++..     +..++.|... .+..||+.|+-.|..+|++++.....+.
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kva   98 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKVA   98 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence            33444434 468899999999999999999988874     6679999985 6889999999999999999887766664


Q ss_pred             hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                           .+|+++|++++..-..-+-.++..|+..++.        +.+..|...+.+...++..+||.++..|..-+..
T Consensus        99 -----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~  163 (556)
T PF05918_consen   99 -----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKP  163 (556)
T ss_dssp             -----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGG
T ss_pred             -----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhh
Confidence                 4889999998877777777777777776653        4455555555421122788999999888655543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.19  E-value=0.001  Score=54.92  Aligned_cols=73  Identities=10%  Similarity=0.137  Sum_probs=62.0

Q ss_pred             ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      .++..|+++|..+.++.+..-||+-|+.++|++|.+...+-+.|+-..++++|.+++..||..|..++.-|..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4789999999655577888889999999999999987777778899999999999999999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.002  Score=65.22  Aligned_cols=160  Identities=11%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             HHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        138 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       138 ~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ......++|+++|+.|+..|...+...+.|.+---...+..+++.|.+..|++++.+ ++.++|++..|.+-.+.-++..
T Consensus       428 ~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq~  506 (743)
T COG5369         428 LDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQK  506 (743)
T ss_pred             cccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCcc
Confidence            334467889999999999999999999999887777789999999999999999996 6779999999999999988755


Q ss_pred             h-HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC---chHHHHHHhCC----cHHHHHHhccCCCCCCh-hHH
Q psy14164        218 C-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLSMG----MVEQMCVLIDIEDALDT-EMN  288 (361)
Q Consensus       218 ~-~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~---~~~~~~l~~~g----~i~~Lv~lL~~~~~~d~-~~~  288 (361)
                      . +-.|+...|+..++.....++.+||.....++.|++...   ...++.+++..    +.+.|++-++..   ++ ++.
T Consensus       507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~---np~~i~  583 (743)
T COG5369         507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN---NPMEIL  583 (743)
T ss_pred             hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc---Cchhhh
Confidence            4 447888999999999999999999999999999999842   22333333222    345566666655   44 444


Q ss_pred             HHHHHHHHHHHhcC
Q psy14164        289 EHLLSALASLIKDS  302 (361)
Q Consensus       289 e~al~aL~~L~~~~  302 (361)
                      +. +..|.+++..+
T Consensus       584 ~~-~yilv~~aa~d  596 (743)
T COG5369         584 EG-CYILVRNAACD  596 (743)
T ss_pred             hh-HHHHHHHHhcc
Confidence            44 66666666544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.16  E-value=0.001  Score=54.95  Aligned_cols=82  Identities=22%  Similarity=0.355  Sum_probs=65.0

Q ss_pred             HhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164         90 NSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADI  168 (361)
Q Consensus        90 ~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i  168 (361)
                      ..+..++.+++|..+.+|.... +......|+.+|.++|....+...++ ++|+=..++.|++|++++||..|+.++..+
T Consensus        35 ~kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   35 DKFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GGGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3344578999999999996533 45677789999999999888888776 677788899999999999999999999887


Q ss_pred             hhcC
Q psy14164        169 VQNN  172 (361)
Q Consensus       169 aqnn  172 (361)
                      ..+|
T Consensus       114 m~~~  117 (119)
T PF11698_consen  114 MVNN  117 (119)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            7554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.12  E-value=0.029  Score=56.45  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=93.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH-------------HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFS-------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS  209 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~-------------q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS  209 (361)
                      +..|+.+|.+  +++...|++.++-+....+.+             +|.+.. -.+|.|++-.... +...|...+.|||
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs  348 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence            5566777766  788999999999999874444             233322 3788998888863 4468999999999


Q ss_pred             HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHH
Q psy14164        210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV  275 (361)
Q Consensus       210 ~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~  275 (361)
                      .++++-|...-.=.-...+|.|++.|..++..++..+...+..++.+.++....-++ .+|+.|++
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            999987755322222457899999999999999999999999999887655443221 44555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2023|consensus

Probab=97.11  E-value=0.0072  Score=62.66  Aligned_cols=171  Identities=13%  Similarity=0.151  Sum_probs=116.9

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH-HHh-
Q psy14164        147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE-FIK-  224 (361)
Q Consensus       147 v~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~-f~~-  224 (361)
                      ++.|..+++-||.-.=.+|.+++.. ...|.+   -.++|.|..+|.+ ++.....-|..||+-||.++....+. +.. 
T Consensus        96 l~~lgd~~~lIr~tvGivITTI~s~-~~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r  170 (885)
T KOG2023|consen   96 LHGLGDASPLIRATVGIVITTIAST-GGLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTR  170 (885)
T ss_pred             HhhccCchHHHHhhhhheeeeeecc-cccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence            3444456667776666666666643 223333   3589999999997 56688999999999999876554332 111 


Q ss_pred             --hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        225 --RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       225 --~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                        .--+|.+++..+++++++|..|..++..+.-..+... ++.=..+++.+-.+-...   ++.+|..+.++|..|+...
T Consensus       171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalanD~---~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALANDE---DPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhc
Confidence              1246888899999999999999999998765433221 111124666676666555   8999999999999999888


Q ss_pred             hHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164        303 PEAQSLCRLEPLNLKFKLNFIKEKHAGNEV  332 (361)
Q Consensus       303 ~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e  332 (361)
                      |+.+.    |  .+..++|-.+...+.++|
T Consensus       247 ~dkl~----p--hl~~IveyML~~tqd~dE  270 (885)
T KOG2023|consen  247 PDKLV----P--HLDNIVEYMLQRTQDVDE  270 (885)
T ss_pred             HHhcc----c--chHHHHHHHHHHccCcch
Confidence            76542    1  345566666666665543

>TIGR02270 conserved hypothetical protein

Probab=97.08  E-value=0.0077  Score=60.45  Aligned_cols=118  Identities=12%  Similarity=-0.019  Sum_probs=81.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      +..|+..|.++++.||..++..||.+-           ..+..+.|+.+|.+ .++.+|..++.+++...          
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r~----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAHR----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHhhc----------
Confidence            788888888888889999999988532           23456777778875 46677777776665511          


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                        ..-.+.+..+|++.+..|+..|+.++..|-..           ..++.|...+.+.   +..+|..|+.++..+
T Consensus       146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~---~~~VR~aA~~al~~l  205 (410)
T TIGR02270       146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS---DPEVRFAALEAGLLA  205 (410)
T ss_pred             --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC---CHHHHHHHHHHHHHc
Confidence              12234667778788888888888888776432           3455566667776   777777777777544

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.08  E-value=0.26  Score=47.72  Aligned_cols=194  Identities=22%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHH---CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---C
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLK---MGGLPVLQPLLEGSDPELRWRAAETVADIVQN---N  172 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~---~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n  172 (361)
                      .+++++.-+....  ...|+.+|..+..++... ...+|+.   .-.+..+.+.++.+..+=+..|+++++-++-.   .
T Consensus        44 ~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKS--SSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence            3677777776543  567888888888876432 2333432   12366677788777777788899998887533   2


Q ss_pred             HHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHHHHHHHHhc--C-ChhhHHHHHhhCcHHHH--HHhhcc---------
Q psy14164        173 PFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR--E-NEECLKEFIKRDGFSVL--LRCIQS---------  237 (361)
Q Consensus       173 ~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al~ALS~l~r--~-~~~~~~~f~~~ggi~~L--v~lL~s---------  237 (361)
                      +... .+++ ...|.|.+.+.... ...+|..++.||+-++.  + .+......+  ..+..+  ...+++         
T Consensus       121 ~~~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  121 EDSE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             ccHH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccC
Confidence            3333 3443 47888888887533 34677777777776543  2 222222111  112211  111221         


Q ss_pred             -CCHHHHHHHHHHHHHHhcCCch-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        238 -KKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       238 -~~~~v~~kA~~ll~~L~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                       ++..+...|+.+.+-|++.-+. ...... ...++.|+.+|.++   |.++|..|-.+|.-|.....
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD---DVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Confidence             2357888888777777766443 122222 34689999999999   99999999999988776544

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.01  E-value=0.26  Score=48.24  Aligned_cols=188  Identities=12%  Similarity=0.188  Sum_probs=122.2

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC---cHH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD---GFS  229 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g---gi~  229 (361)
                      +++++--.+-.+|..++.. +.+...++....+..+.+.+.. ++-.|...|...+..+...|+.....|+..+   -+.
T Consensus       135 ~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~  212 (335)
T PF08569_consen  135 ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQ  212 (335)
T ss_dssp             GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH
T ss_pred             cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3455566666667766654 4445566666777777777765 5678999999999998777888888888766   345


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCCch--H-HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC---h
Q psy14164        230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQ--V-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS---P  303 (361)
Q Consensus       230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~--~-~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~---~  303 (361)
                      ....+|.+++.-+|+.+.-+++.|+.....  . .+++-+..-+..++.+|++.   +..+|-.|...+.-.+...   +
T Consensus       213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp~K~~  289 (335)
T PF08569_consen  213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANPNKPP  289 (335)
T ss_dssp             HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-SS-BH
T ss_pred             HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCCCCCh
Confidence            778889999999999999999999975322  2 34555566799999999998   8999999999998888654   2


Q ss_pred             HHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Q psy14164        304 EAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLT  345 (361)
Q Consensus       304 ~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~  345 (361)
                      .....-...+-.|...|.+-...-...+.+.+|-+|.-+-++
T Consensus       290 ~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~  331 (335)
T PF08569_consen  290 PIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIE  331 (335)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHH
Confidence            222222122212222222221111124466777666655544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>TIGR02270 conserved hypothetical protein

Probab=97.00  E-value=0.14  Score=51.54  Aligned_cols=129  Identities=12%  Similarity=-0.015  Sum_probs=88.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      ..++++.+|+++++.||..|+++||.+-.           ...++.|...+.+ .++.||..|+++++-+  |.+.+...
T Consensus       148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d-~~~~VR~aA~~al~~l--G~~~A~~~  213 (410)
T TIGR02270       148 PGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRD-SDPEVRFAALEAGLLA--GSRLAWGV  213 (410)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcC-CCHHHHHHHHHHHHHc--CCHhHHHH
Confidence            46788999999999999999999998653           3467778877775 6889999999999776  33433322


Q ss_pred             HH---hhCc-------------------HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164        222 FI---KRDG-------------------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI  279 (361)
Q Consensus       222 f~---~~gg-------------------i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~  279 (361)
                      ++   ...|                   ++.|+.+++.  ..++..+++++..+-.  +         ..++.|+..+..
T Consensus       214 l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d  280 (410)
T TIGR02270       214 CRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD--V---------EAAPWCLEAMRE  280 (410)
T ss_pred             HHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC--c---------chHHHHHHHhcC
Confidence            22   1111                   2333444443  2367777777665432  2         468888888874


Q ss_pred             CCCCChhHHHHHHHHHHHHHhcC
Q psy14164        280 EDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       280 ~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +     .++..|..++..|+.-.
T Consensus       281 ~-----~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       281 P-----PWARLAGEAFSLITGMD  298 (410)
T ss_pred             c-----HHHHHHHHHHHHhhCCC
Confidence            3     59999999999988644

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.00  E-value=0.0094  Score=57.76  Aligned_cols=138  Identities=19%  Similarity=0.310  Sum_probs=98.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC------
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN------  215 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~------  215 (361)
                      .++.+..+|.+.+..||..|+.+||.+-  +|         ..++.|+.++..+.+..||..|+++|..+--..      
T Consensus        75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~  143 (335)
T COG1413          75 AVPLLRELLSDEDPRVRDAAADALGELG--DP---------EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLL  143 (335)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHH
Confidence            4788888888989999999999888652  22         367888888886567788888888888763211      


Q ss_pred             ------h----------h---hHHHHH-------hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164        216 ------E----------E---CLKEFI-------KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  269 (361)
Q Consensus       216 ------~----------~---~~~~f~-------~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~  269 (361)
                            .          +   .+...+       +...++.++..+.+.+..+|..|+.++..+....         ..+
T Consensus       144 ~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~  214 (335)
T COG1413         144 EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEA  214 (335)
T ss_pred             HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhH
Confidence                  0          0   111111       1235678888888888899999999999887653         245


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ...+...+..+   +..++..++.+|..+-...
T Consensus       215 ~~~l~~~~~~~---~~~vr~~~~~~l~~~~~~~  244 (335)
T COG1413         215 ADLLVKALSDE---SLEVRKAALLALGEIGDEE  244 (335)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHhcccCcch
Confidence            56777778877   8888888887776665433

>KOG2259|consensus

Probab=96.96  E-value=0.011  Score=61.22  Aligned_cols=178  Identities=11%  Similarity=0.060  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCC--------------HHHHHHhhcCCCHHHHHHHH---HHHHHHh--hcCHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGG--------------LPVLQPLLEGSDPELRWRAA---ETVADIV--QNNPFS  175 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg--------------~~~Lv~LL~s~~~~vr~~Aa---~~Lg~ia--qnn~~~  175 (361)
                      .+...++.-|.+++.+.|..-.-+...|              +...+.++..++..||..|.   |++||..  .-..+.
T Consensus       194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            4455566668888887775522122222              66678889999999999985   4555554  111111


Q ss_pred             HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH-----------------------------------
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK-----------------------------------  220 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~-----------------------------------  220 (361)
                      .+.=+.-.++..+...++. -+-.||+.|+-+|+.+-.-+...+.                                   
T Consensus       274 ~e~kl~D~aF~~vC~~v~D-~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRD-RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhc-CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            1111122356667777764 4567888888887766432222211                                   


Q ss_pred             ---------------HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh
Q psy14164        221 ---------------EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT  285 (361)
Q Consensus       221 ---------------~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~  285 (361)
                                     .++.+|.-..+++.|.+.-..||+.|+..++.|+.+.|.+-..     .+..|+.++...   ..
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE---~~  424 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE---IE  424 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH---HH
Confidence                           1222333356677777667899999999999999988866544     467889999887   88


Q ss_pred             hHHHHHHHHHHHHHhc
Q psy14164        286 EMNEHLLSALASLIKD  301 (361)
Q Consensus       286 ~~~e~al~aL~~L~~~  301 (361)
                      ++|.+|+.+|..|+..
T Consensus       425 ~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999865

>KOG1061|consensus

Probab=96.95  E-value=0.0096  Score=62.60  Aligned_cols=145  Identities=17%  Similarity=0.237  Sum_probs=119.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      +.++.++++....+.+++...---+.+.++..|..+     .+++..+++=..+ +++.+|..|+...+++--+      
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d-~np~iR~lAlrtm~~l~v~------  116 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCED-PNPLIRALALRTMGCLRVD------  116 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCC-CCHHHHHHHhhceeeEeeh------
Confidence            348889999999999999999999999999999755     3467777776664 6789999999988887432      


Q ss_pred             HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      .+. .....+|.+++++++.-+|+.|+..+..+-.-+   .+...+.|+++.|-.++...   ++.+...|+.+|..|..
T Consensus       117 ~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~---~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  117 KIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS---NPMVVANALAALSEIHE  189 (734)
T ss_pred             HHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC---CchHHHHHHHHHHHHHH
Confidence            222 234678999999999999999999999986544   45677889999999999977   89999999999999998


Q ss_pred             cChH
Q psy14164        301 DSPE  304 (361)
Q Consensus       301 ~~~~  304 (361)
                      .++.
T Consensus       190 ~~~~  193 (734)
T KOG1061|consen  190 SHPS  193 (734)
T ss_pred             hCCC
Confidence            8763

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.95  E-value=0.012  Score=47.08  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164        158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS  237 (361)
Q Consensus       158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s  237 (361)
                      |..++..|+.++..-+..-...++ ..+|+++..+.. ++..||..|+.+|.++++........++ ...+..|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            556677777776665554333333 489999999985 7889999999999999986544333322 4578889999999


Q ss_pred             CCHHHHHHHHHH
Q psy14164        238 KKEKLVIKSCFL  249 (361)
Q Consensus       238 ~~~~v~~kA~~l  249 (361)
                      ++..||.-|..+
T Consensus        80 ~d~~Vr~~a~~L   91 (97)
T PF12755_consen   80 PDENVRSAAELL   91 (97)
T ss_pred             CchhHHHHHHHH
Confidence            999998877543

>KOG1059|consensus

Probab=96.93  E-value=0.15  Score=53.73  Aligned_cols=92  Identities=22%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      -+.--||.-|..++ ..|-|+|+     .+-++.||+|+-+=+|..|.-++-.+.---|+.   +  .-.+|.|..-|..
T Consensus       124 ye~giAL~GLS~fv-TpdLARDL-----a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeD  192 (877)
T KOG1059|consen  124 YEVGLALSGLSCIV-TPDLARDL-----ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLED  192 (877)
T ss_pred             chhhheeccccccc-CchhhHHH-----HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccC
Confidence            34445666666665 56777775     345677788888888888887777766544432   2  2357777777774


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                       +|+.|+..|+..|+-++|.+|.+
T Consensus       193 -pDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  193 -PDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             -CCchHHHHHHHHHHHHHhhCCcc
Confidence             67788888888888888877765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.92  E-value=0.29  Score=49.23  Aligned_cols=195  Identities=15%  Similarity=0.210  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHHHHHH-----HHHhh
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETV-----ADIVQ  170 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~Aa~~L-----g~iaq  170 (361)
                      .+.+.+.+....+.. +...+..++..+.-++--......+.  ..+..+..-+ .......+..+..++     |-+..
T Consensus       188 ~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R  264 (415)
T PF12460_consen  188 EELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR  264 (415)
T ss_pred             HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence            345556655555533 35677888887777774422222111  1122222222 233444455554444     33455


Q ss_pred             cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-------------HHHHHhhCcHHHHHHhhcc
Q psy14164        171 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-------------LKEFIKRDGFSVLLRCIQS  237 (361)
Q Consensus       171 nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-------------~~~f~~~ggi~~Lv~lL~s  237 (361)
                      ++|...+      .+..|+.+|.+   +.+...|+-++.-++.+.+..             .+.|+ .-.+|.|++..+.
T Consensus       265 ~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~  334 (415)
T PF12460_consen  265 GHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKE  334 (415)
T ss_pred             CCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhh
Confidence            5665443      46778899986   467888899998888773332             22333 3457788888887


Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      .+...|..-..++++++.+-|...-.-.=..++|.|++-|..+   |.+++..++.+|..++...++.+.
T Consensus       335 ~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~  401 (415)
T PF12460_consen  335 ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELIS  401 (415)
T ss_pred             cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHH
Confidence            7766888888999999998663321111124788999999998   999999999999999999877654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0213|consensus

Probab=96.86  E-value=0.0067  Score=63.54  Aligned_cols=143  Identities=12%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC------Chhh
Q psy14164        145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE------NEEC  218 (361)
Q Consensus       145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~------~~~~  218 (361)
                      .++..|++.++.+|.+|+..++.++---..|++.-.=...--.|...|.. ..+++.-..+.||.+|+.-      .|+.
T Consensus       803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi  881 (1172)
T KOG0213|consen  803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPI  881 (1172)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence            34557889999999999999999986444444332211122335566664 3556666555555555432      2333


Q ss_pred             HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH---HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV---KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       219 ~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                            .+.+|.|..+|++...||+....-++..++...++.   ++.+   .++--|+++|++.   ...+|..|..++
T Consensus       882 ------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkah---kK~iRRaa~nTf  949 (1172)
T KOG0213|consen  882 ------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAH---KKEIRRAAVNTF  949 (1172)
T ss_pred             ------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence                  467899999999999999999999999999887653   4444   3566788888887   888999998888


Q ss_pred             HHHHh
Q psy14164        296 ASLIK  300 (361)
Q Consensus       296 ~~L~~  300 (361)
                      ..|+.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            88876

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.72  E-value=0.053  Score=47.17  Aligned_cols=126  Identities=13%  Similarity=0.208  Sum_probs=93.7

Q ss_pred             HHHHHhcChHHHHHHhhccCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHH
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSN-----TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCF  248 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~-----~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~  248 (361)
                      ...|++.||+..|++++.++..     ..+-..++.|...+.-|.--.+ ..+...-+..++......  +..+.+.|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4568899999999999997552     3555666667666665533333 233333445555555543  7899999999


Q ss_pred             HHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        249 LIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       249 ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      .+-+++.+++.....+.+.=-++.|+..|..+   +.+++.+++..+-+|....+..
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChH
Confidence            99999998776666666655699999999998   9999999999999999877653

>KOG1222|consensus

Probab=96.69  E-value=0.04  Score=55.50  Aligned_cols=120  Identities=16%  Similarity=0.238  Sum_probs=92.9

Q ss_pred             cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy14164        131 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC  210 (361)
Q Consensus       131 idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~  210 (361)
                      .+|+..+..+|.++.|+++..+.+++++...+..+=|++-. ...+..++..|.+|.|..+|.++....+..+.+|-+|+
T Consensus       335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~  413 (791)
T KOG1222|consen  335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSC  413 (791)
T ss_pred             ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhcc
Confidence            47899999999999999999999999999999999999854 34677789999999999999987777788888888887


Q ss_pred             HhcCChhhHHHHHhhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHhc
Q psy14164        211 LVRENEECLKEFIKRDGFSVLLRCI-QSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       211 l~r~~~~~~~~f~~~ggi~~Lv~lL-~s~~~~v~~kA~~ll~~L~~  255 (361)
                          +......|.-...++.++..+ ...+.+|-.....+.-||+.
T Consensus       414 ----dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l  455 (791)
T KOG1222|consen  414 ----DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL  455 (791)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh
Confidence                444555566666777776643 34455555555444455553

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.68  E-value=0.27  Score=43.41  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR  233 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~  233 (361)
                      ++.||..++.++|.++..-|..-+     ..+|.+...|.+ +++.||+.|+..|+.++....-..+    ...+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence            578999999999999988775333     368899999996 6889999999999999864322111    112367778


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcC
Q psy14164        234 CIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       234 lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      ++.+++..|+.-|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999876

>KOG2023|consensus

Probab=96.68  E-value=0.039  Score=57.45  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH-HHhc---ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF-IIQT---DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~-v~~~---g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ++|.|..+|.+++....+.|..+|..++...+..-+. +...   -.+|.+++.+++ +++.+|..|+.++-..+-..+.
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcH
Confidence            4667778899999999999999999999887654322 1111   268999999998 5789999999999887765444


Q ss_pred             hHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        218 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       218 ~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                      +...-++ .-++.|..+-.+.++.||+..|.++..|+.-.++-..-- =.++++.++..-...   |..+--.|.....+
T Consensus       208 al~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~---dE~VALEACEFwla  282 (885)
T KOG2023|consen  208 ALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDV---DENVALEACEFWLA  282 (885)
T ss_pred             HHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCc---chhHHHHHHHHHHH
Confidence            3222111 123455555566799999999999999987544211110 136788888777766   77777777787888


Q ss_pred             HHhcC
Q psy14164        298 LIKDS  302 (361)
Q Consensus       298 L~~~~  302 (361)
                      ++...
T Consensus       283 ~aeqp  287 (885)
T KOG2023|consen  283 LAEQP  287 (885)
T ss_pred             HhcCc
Confidence            87654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.66  E-value=0.05  Score=48.14  Aligned_cols=95  Identities=15%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc-HHHHHHh
Q psy14164        198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVL  276 (361)
Q Consensus       198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~-i~~Lv~l  276 (361)
                      +.+|..++-+++-++.-+|...+.+     ++.+..+|.++++.||+.|..++++|..++..-     -.|- +..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHH
Confidence            5799999999999988787665544     678899999999999999999999999864311     1233 3677788


Q ss_pred             ccCCCCCChhHHHHHHHHHHHHHhc-ChHH
Q psy14164        277 IDIEDALDTEMNEHLLSALASLIKD-SPEA  305 (361)
Q Consensus       277 L~~~~~~d~~~~e~al~aL~~L~~~-~~~~  305 (361)
                      |..+   +++++..|...+..+... .|+.
T Consensus        72 l~D~---~~~Ir~~A~~~~~e~~~~~~~~~   98 (178)
T PF12717_consen   72 LVDE---NPEIRSLARSFFSELLKKRNPNI   98 (178)
T ss_pred             HcCC---CHHHHHHHHHHHHHHHHhccchH
Confidence            8877   999999999999999987 5543

>KOG1060|consensus

Probab=96.63  E-value=0.79  Score=48.92  Aligned_cols=167  Identities=12%  Similarity=0.156  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      .+..|.+|+..+..++...+++.++     +|.+|+...+.+.+||...---|-.-|.++|...  ++   -|..+=+-|
T Consensus        48 kd~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--LL---SIntfQk~L  117 (968)
T KOG1060|consen   48 KDSLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--LL---SINTFQKAL  117 (968)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--ee---eHHHHHhhh
Confidence            3468889999888888877777664     7888888888888888877666666666555322  11   244455556


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  272 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~  272 (361)
                      . +++.-+|..|+.++|+|=-   +.+.-++    +-.+.++..++...||+.|+.+|-.|-+-+++.+..++     +.
T Consensus       118 ~-DpN~LiRasALRvlSsIRv---p~IaPI~----llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~  184 (968)
T KOG1060|consen  118 K-DPNQLIRASALRVLSSIRV---PMIAPIM----LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EV  184 (968)
T ss_pred             c-CCcHHHHHHHHHHHHhcch---hhHHHHH----HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HH
Confidence            5 4788999999999999732   1221121    33456677788999999999999999988888887654     44


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~  308 (361)
                      +-.||...   ++-+.-.|+.|...   .||+.++.
T Consensus       185 I~~LLaD~---splVvgsAv~AF~e---vCPerldL  214 (968)
T KOG1060|consen  185 IKKLLADR---SPLVVGSAVMAFEE---VCPERLDL  214 (968)
T ss_pred             HHHHhcCC---CCcchhHHHHHHHH---hchhHHHH
Confidence            55666666   77777766666644   34655443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.60  E-value=0.064  Score=54.56  Aligned_cols=174  Identities=14%  Similarity=0.191  Sum_probs=106.4

Q ss_pred             HHHHHHhhcCcccHHHHHHCCCHHHHHHh----------hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        121 LDNLSDYICSIDYANDFLKMGGLPVLQPL----------LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       121 l~~L~~lve~idna~~~~~~Gg~~~Lv~L----------L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      |..|.-+..+..++..+..-.|+..|+++          ...++..+...|++||+|+.-++|..|+.+++.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            44555555555555555555555555553          34578899999999999999999999999999999999999


Q ss_pred             hhccCC----CHHHH---HHHHHHHHHHhcCChhhHHHHHh-hCcHHHHHHhhcc-----------------CCHHHHHH
Q psy14164        191 SIEHDS----NTTVQ---VKSLYAVSCLVRENEECLKEFIK-RDGFSVLLRCIQS-----------------KKEKLVIK  245 (361)
Q Consensus       191 LL~~~~----~~~v~---~~Al~ALS~l~r~~~~~~~~f~~-~ggi~~Lv~lL~s-----------------~~~~v~~k  245 (361)
                      .|+...    +..+.   .+-++-++.   ..+..+..+++ ++|+..|+..|..                 .+..+..+
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa---~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTA---LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhc---CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            998642    22332   333333333   34444555554 5788888776642                 14456677


Q ss_pred             HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhcc----C--CCCCChhHHHHHHHHHHHH
Q psy14164        246 SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID----I--EDALDTEMNEHLLSALASL  298 (361)
Q Consensus       246 A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~----~--~~~~d~~~~e~al~aL~~L  298 (361)
                      ++-++.|++...+.... -.....++.|+.+|.    .  ++.......-++..+|.++
T Consensus       159 iLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl  216 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL  216 (446)
T ss_pred             HHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence            77888888765433222 011223333333322    1  1122345666777777666

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.60  E-value=0.021  Score=45.67  Aligned_cols=93  Identities=12%  Similarity=0.280  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh--CCcHHHHHHhc
Q psy14164        200 VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--MGMVEQMCVLI  277 (361)
Q Consensus       200 v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~--~g~i~~Lv~lL  277 (361)
                      .|+-++.+|+.++-+-+......+ .-.+++++.++.+.+.+||--||.++++++..   .+..++.  ..++..|++++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLS   77 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            367788999988877666555554 46789999999999999999999999999864   2222221  35678888888


Q ss_pred             cCCCCCChhHHHHHHHHHHHHHh
Q psy14164        278 DIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       278 ~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      ..+   +..++..| ..|-.+++
T Consensus        78 ~D~---d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   78 ADP---DENVRSAA-ELLDRLLK   96 (97)
T ss_pred             cCC---chhHHHHH-HHHHHHhc
Confidence            877   78877654 66666654

>KOG1248|consensus

Probab=96.53  E-value=0.26  Score=54.45  Aligned_cols=213  Identities=14%  Similarity=0.106  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCH
Q psy14164         81 NRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDP  155 (361)
Q Consensus        81 ~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~--~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~  155 (361)
                      ..+.|++++..-.  .-..+.+..+...|.+...+  ...+..++..|..+++..++ -.+|+.- .++-++=+++.-+.
T Consensus       674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHhcccccH
Confidence            4566777666511  11233344444444443322  35666777777777766551 1233322 24444444477788


Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHhcC------hHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        156 ELRWRAAETVADIVQNNPFSQNFIIQTD------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g------~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                      .-|..|..+|-.++.     -+...+.|      .+..++..+...   ....++...+.|++.+...+......-.-.+
T Consensus       753 ~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~  827 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK  827 (1176)
T ss_pred             HHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            889999888888873     11122223      444555554432   2223333347888888764433333222344


Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      -+..+...|.+....+++-|..+|.-++...|+..-.....-+++.+..+++..   ...++.++...|..|...+
T Consensus       828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~---k~~~r~Kvr~LlekLirkf  900 (1176)
T KOG1248|consen  828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH---KIKVRKKVRLLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHh
Confidence            556667778899999999999999999998776554444445788888888876   7889999988888888755

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.53  E-value=0.2  Score=53.69  Aligned_cols=162  Identities=11%  Similarity=0.106  Sum_probs=105.7

Q ss_pred             CHHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCH
Q psy14164         78 NEANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP  155 (361)
Q Consensus        78 s~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~  155 (361)
                      +.++..-++..++.|.  .|-..+.-+.++...  +.+.+.|.-.---|+.+-+. ..  +... =.+..+.+=|+++++
T Consensus        33 ~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~l-LavNti~kDl~d~N~  106 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELAL-LAVNTIQKDLQDPNE  106 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHH-HHHHHHHhhccCCCH
Confidence            4455666666666666  232334444444444  23334443222222222221 11  1111 146677777889999


Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh
Q psy14164        156 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI  235 (361)
Q Consensus       156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL  235 (361)
                      .+|..|.+.++.+=  .++    ++ ..+++++.+++.+ +.+.||++|+.||..+=+-.+   ..+-+.|-+..+..++
T Consensus       107 ~iR~~AlR~ls~l~--~~e----l~-~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~  175 (757)
T COG5096         107 EIRGFALRTLSLLR--VKE----LL-GNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV  175 (757)
T ss_pred             HHHHHHHHHHHhcC--hHH----HH-HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh
Confidence            99999999999873  222    22 2378899999997 678999999999999975433   4566667778888888


Q ss_pred             ccCCHHHHHHHHHHHHHHhcC
Q psy14164        236 QSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       236 ~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      .+.++.|...|...+..+..+
T Consensus       176 ~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         176 ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hCCCchHHHHHHHHHHHhchh
Confidence            899999999999998887544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.52  E-value=0.0048  Score=38.42  Aligned_cols=29  Identities=41%  Similarity=0.668  Sum_probs=26.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN  171 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn  171 (361)
                      +|.+++++++++++||..|+++||.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.51  E-value=0.025  Score=49.99  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhcc---------CCHHHHHHHHHHHHHH
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACL  253 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s---------~~~~v~~kA~~ll~~L  253 (361)
                      ....+++.+.+.+.   ..+.+..|.-..|.++. -.+.|++.||+..|+.+|..         .+..+...+..++..|
T Consensus        67 ~p~~~i~~L~~~~~---~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS---TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCc---cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            44556777765322   22778888877776654 58899999999999998863         3568889999999999


Q ss_pred             hcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        254 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       254 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      +....-....+...+++..|+..|.++   +..++..++..|..+.
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence            886544444444678999999999998   9999999999887764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1991|consensus

Probab=96.49  E-value=0.27  Score=53.42  Aligned_cols=117  Identities=17%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCC------CCHHHHHHHHHHHHHhhcCcc----cHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164         99 ELEKIIKTLKENQ------DQKDICIGALDNLSDYICSID----YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI  168 (361)
Q Consensus        99 ~mk~~l~~L~~~~------~~~~~~~~Al~~L~~lve~id----na~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i  168 (361)
                      .|.=++.+|....      .....|..||-.+..+++-+.    .++.+..+ .++.+...++|+.--+|.+|||+++..
T Consensus       411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            3455555666222      334566666666666553332    23333332 356667788999999999999999999


Q ss_pred             hhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        169 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       169 aqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                      +.-+=..+..+  ..++....+.|.++.+..||+.|+.||.+++.+++.+
T Consensus       490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~  537 (1010)
T KOG1991|consen  490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA  537 (1010)
T ss_pred             HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence            84322222222  2356667777776677789999999999999987755

>KOG1824|consensus

Probab=96.49  E-value=0.14  Score=55.32  Aligned_cols=193  Identities=14%  Similarity=0.135  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH--
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEGSDPELRWRAAETVADIVQNNPFS--  175 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~--  175 (361)
                      ...+.+..+.++..++..++-|+-.|.++=.-.|    .....++ ..++..++|++.+|+.+|+.+||+++-+|-..  
T Consensus       818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yL  893 (1233)
T KOG1824|consen  818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYL  893 (1233)
T ss_pred             HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHH
Confidence            3455556666666666777777766666543332    1222233 35678999999999999999999999865321  


Q ss_pred             ------------HHHHH---------h------cChHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        176 ------------QNFII---------Q------TDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       176 ------------q~~v~---------~------~g~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                                  +++++         .      ...++.+|.+|...   ..+..|--.+-+|+-++-.+|.        
T Consensus       894 pfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------  965 (1233)
T KOG1824|consen  894 PFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------  965 (1233)
T ss_pred             HHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------
Confidence                        00000         0      11233344433211   1123343344444444443332        


Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        226 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       226 ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      .-+|.|-..+.++....|.-+..++.+..+.+|.-.+.+.+ ..|.....+++.+   |..+|..|+.++...+.+.|..
T Consensus       966 sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp---Dl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen  966 SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP---DLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC---chhHHHHHHHHHHHHHccCHhH
Confidence            23577778888889999999999998888877766665554 4567788889999   9999999999999999888876


Q ss_pred             HH
Q psy14164        306 QS  307 (361)
Q Consensus       306 ~~  307 (361)
                      ++
T Consensus      1042 Ir 1043 (1233)
T KOG1824|consen 1042 IR 1043 (1233)
T ss_pred             HH
Confidence            64

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.48  E-value=0.0082  Score=61.80  Aligned_cols=148  Identities=14%  Similarity=0.229  Sum_probs=98.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH--HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-H
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-L  219 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~--~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~  219 (361)
                      +..++.+|+|+.+.+|.+|+...|.++.--..|-+  .+.+.|  -.|..-|.. ..+++.-..+.||.+|..-..-. .
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGE-DYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence            34456789999999999999999998742211111  111122  223444443 34566666666666654321100 0


Q ss_pred             HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCch---HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        220 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ---VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      +.= -.|.+|.|..+|++...||+....-++.-++...|+   .++.+   .+.--|+++|.+.   +.++|..|-.++.
T Consensus       683 qpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~---nKeiRR~A~~tfG  755 (975)
T COG5181         683 QPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSW---NKEIRRNATETFG  755 (975)
T ss_pred             CCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHh---hHHHHHhhhhhhh
Confidence            000 157789999999999999999999999999988765   34443   2556688888888   8899999988888


Q ss_pred             HHHh
Q psy14164        297 SLIK  300 (361)
Q Consensus       297 ~L~~  300 (361)
                      .|+.
T Consensus       756 ~Is~  759 (975)
T COG5181         756 CISR  759 (975)
T ss_pred             hHHh
Confidence            8775

>KOG4535|consensus

Probab=96.44  E-value=0.013  Score=58.74  Aligned_cols=179  Identities=16%  Similarity=0.177  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh----c--CHHHHHHHHhcChHHHH
Q psy14164        116 ICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQ----N--NPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       116 ~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq----n--n~~~q~~v~~~g~l~~L  188 (361)
                      .+.+|+..+..+|-....+.+.. -..+...++.-|.+..-..|..|+|.+|||+.    |  ||..+..=+..-.+..+
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~  486 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM  486 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            45666777766666555554432 12345666667777788899999999999864    3  33333322222345556


Q ss_pred             HHhhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-------CcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        189 LTSIEH--DSNTTVQVKSLYAVSCLVRENEECLKEFIKR-------DGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       189 l~LL~~--~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-------ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++...  .....|+.+|+.+|+|+..    ..+.++..       +.+..+... +-....+||-+||.+++||..+..
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence            665432  1234899999999999864    22223221       222222221 223578999999999999988632


Q ss_pred             h-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        259 Q-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       259 ~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      - +...=..--+++.|+.|+.+-+  +=++|..|..+|..-.+
T Consensus       563 ~~lq~~~wA~~~F~~L~~Lv~~~~--NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  563 LPLQTAPWASQAFNALTSLVTSCK--NFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ccccCCCchHHHHHHHHHHHHHhc--cceEeehhhhhhcCCCC
Confidence            1 1110001124667777776542  56788888888865443

>KOG4413|consensus

Probab=96.40  E-value=0.11  Score=50.29  Aligned_cols=182  Identities=16%  Similarity=0.200  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcc-cH----HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164         96 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSID-YA----NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI  168 (361)
Q Consensus        96 ~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~id-na----~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i  168 (361)
                      .+.+....+..|...-  ++...|.-++..+..++|+-| |+    ..++..|.++.++.|+-.++.+|-..|...|..+
T Consensus        76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri  155 (524)
T KOG4413|consen   76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI  155 (524)
T ss_pred             chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            3444555555555433  445789999999999999988 33    2355778899999999999999999999999999


Q ss_pred             hhcCHHHHHHHHhcChHHHH--HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHH
Q psy14164        169 VQNNPFSQNFIIQTDFLNLL--LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIK  245 (361)
Q Consensus       169 aqnn~~~q~~v~~~g~l~~L--l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~k  245 (361)
                      +- -|..-..+.+...+..+  ..|... .+.-+|...+.-|--|..-++.....+-..|-+..|..-|+. .|.-|+..
T Consensus       156 al-fpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVian  233 (524)
T KOG4413|consen  156 AL-FPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIAN  233 (524)
T ss_pred             Hh-cHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhh
Confidence            85 45555666666655443  333333 344667766666665555566677777778888888877877 47788888


Q ss_pred             HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164        246 SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       246 A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..-+++.|+. ..+.++++.+.|+|..+++++...
T Consensus       234 ciElvteLae-teHgreflaQeglIdlicnIIsGa  267 (524)
T KOG4413|consen  234 CIELVTELAE-TEHGREFLAQEGLIDLICNIISGA  267 (524)
T ss_pred             HHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCC
Confidence            8888888876 346788888999999999999876

>KOG1241|consensus

Probab=96.37  E-value=0.034  Score=58.57  Aligned_cols=154  Identities=13%  Similarity=0.078  Sum_probs=112.8

Q ss_pred             CCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh----ccCCCHHHHHHHHHHHH
Q psy14164        141 GGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI----EHDSNTTVQVKSLYAVS  209 (361)
Q Consensus       141 Gg~~~Lv~LL~s-------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL----~~~~~~~v~~~Al~ALS  209 (361)
                      +.+|.|+.+|..       ++-.+-..|--||.-.+|.        .+...+|+.+..+    ++ ++-.-|..|+.|.+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--------~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFG  389 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--------VGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFG  389 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--------hcccchhhhHHHHHHhcCC-cchhhhhHHHHHHH
Confidence            456778888764       1234667777777777653        2334455555544    44 56678889999999


Q ss_pred             HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH-HHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164        210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMN  288 (361)
Q Consensus       210 ~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~  288 (361)
                      ++.-|-.+....-+-.+++|.++.++.+++.-++.-++|.+..++..-++.+ ....-.+.+..++.-|..    .+.+-
T Consensus       390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----ePrva  465 (859)
T KOG1241|consen  390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----EPRVA  465 (859)
T ss_pred             hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh----CchHH
Confidence            9999877766666678999999999998899999999999999998755332 223334566777776664    68899


Q ss_pred             HHHHHHHHHHHhcChHHHH
Q psy14164        289 EHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       289 e~al~aL~~L~~~~~~~~~  307 (361)
                      .++.+++.+|+..++++..
T Consensus       466 ~N~CWAf~~Laea~~eA~~  484 (859)
T KOG1241|consen  466 SNVCWAFISLAEAAYEAAV  484 (859)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            9999999999987766543

>KOG1789|consensus

Probab=96.35  E-value=0.34  Score=53.16  Aligned_cols=180  Identities=17%  Similarity=0.230  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhhc-CcccHHHHH----HCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164        115 DICIGALDNLSDYIC-SIDYANDFL----KMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       115 ~~~~~Al~~L~~lve-~idna~~~~----~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L  188 (361)
                      +...-+|.+|.+++. +.|-|..|.    -+|-++.+..+|. +.++.|+..|+.+|.-++. |..|-..+.+.|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            345556777777764 567776653    3577888888885 5888999999999987665 55577778889999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcC---CchHH---
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTD---NNQVK---  261 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~---~~~~~---  261 (361)
                      +.+|.+.  ++.|..++..|-.++. ++....+-..+||+..|...+- +++...|..|+.++..|...   +|.++   
T Consensus      1819 L~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1819 LTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999874  4677777766666665 5666677788999988887664 56789999999999999864   33221   


Q ss_pred             --------HHHHhCCcHHHHHHhccCCCCC-----ChhHHHHHHHHHHHHH
Q psy14164        262 --------QVLLSMGMVEQMCVLIDIEDAL-----DTEMNEHLLSALASLI  299 (361)
Q Consensus       262 --------~~l~~~g~i~~Lv~lL~~~~~~-----d~~~~e~al~aL~~L~  299 (361)
                              ...+.. ..+..+..++.+.+.     ++..+.++-..+..++
T Consensus      1896 ~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~ 1945 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMV 1945 (2235)
T ss_pred             HHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHH
Confidence                    112222 236777777765111     2234455555555554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.34  E-value=0.084  Score=49.55  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHh
Q psy14164        198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL  276 (361)
Q Consensus       198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~l  276 (361)
                      ......|+..|-.+|--+|+.+..|-+..++..|+++|.. .+..++..+..++.+++..+|...+.|-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            3556778888888888899999999999999999999954 589999999999999988899999999999999999999


Q ss_pred             ccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        277 IDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       277 L~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +++. ..+.+++-+++..|.-.+...
T Consensus       185 lk~~-~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSK-STDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             Hccc-cccHHHhHHHHHHHHHHHccc
Confidence            9875 346789889998887776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG3036|consensus

Probab=96.33  E-value=0.35  Score=44.95  Aligned_cols=211  Identities=15%  Similarity=0.157  Sum_probs=134.0

Q ss_pred             CCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHH--HH-HHHHhhcCCHHHHHHHHHHHHhcCC---CC---HHH
Q psy14164         46 PSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGF--LL-DALNSMMVNVGAELEKIIKTLKENQ---DQ---KDI  116 (361)
Q Consensus        46 ~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~--L~-eal~~~~~~~~~~mk~~l~~L~~~~---~~---~~~  116 (361)
                      ..+-.++-.|.++-..|+.-.+     ....+++.+..+  |. ..+.++ ...+-++.+++.+.-...   -+   ...
T Consensus        22 ~~~~dk~~~~i~~l~~~p~rE~-----aL~ELskkre~~~dlA~~lW~s~-g~~~~LLqEivaiYp~l~p~~l~~~qsnR   95 (293)
T KOG3036|consen   22 ASNNDKAYQLILSLVSPPTREM-----ALLELSKKREPFPDLAPMLWHSF-GTMVALLQEIVAIYPSLSPPTLTPAQSNR   95 (293)
T ss_pred             cccccchhhHHHHhhCCchHHH-----HHHHHHHhccCCccccHHHHHhc-chHHHHHHHHHhcccccCCCCCCccccch
Confidence            3455668899999877653221     122233222210  11 122332 344667777777643222   11   234


Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHH
Q psy14164        117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLT  190 (361)
Q Consensus       117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-----s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~  190 (361)
                      .-.||.-|..+....|....|.+...=-.|..+|.     .+..-+|-.++.+||.++++.+. +-..++..+++|..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            57788888888888999999998875444555654     36678999999999999998654 5556678899999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChh------hHHHHHhhC-cH-HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEE------CLKEFIKRD-GF-SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  262 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~------~~~~f~~~g-gi-~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~  262 (361)
                      .+..+ ++.-+.-|++.+.-|.-+..-      ..+.|...+ .+ ..+.++.+.++.++-+.+..+...|+. +|..+.
T Consensus       176 ime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~  253 (293)
T KOG3036|consen  176 IMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARA  253 (293)
T ss_pred             HHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHH
Confidence            99974 567788888888877654221      133444322 12 234445556788888888888777755 455555


Q ss_pred             HH
Q psy14164        263 VL  264 (361)
Q Consensus       263 ~l  264 (361)
                      .+
T Consensus       254 aL  255 (293)
T KOG3036|consen  254 AL  255 (293)
T ss_pred             HH
Confidence            44

>KOG2999|consensus

Probab=96.27  E-value=0.23  Score=50.91  Aligned_cols=162  Identities=16%  Similarity=0.251  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh
Q psy14164         94 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSD----PELRWRAAETVADIV  169 (361)
Q Consensus        94 ~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~----~~vr~~Aa~~Lg~ia  169 (361)
                      .++...-+.+++++.+++  ...+..|+.+|..+.-+...+..|++..|+..|..++.+..    .++...++++...+.
T Consensus        79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm  156 (713)
T KOG2999|consen   79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM  156 (713)
T ss_pred             cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            456667788999998853  35666699999999988899999999999999999998754    467777777766655


Q ss_pred             hcCHHHHHHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHH
Q psy14164        170 QNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF  248 (361)
Q Consensus       170 qnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~  248 (361)
                      ...-..- ..+...++.....+..- -.+..+-..|+.-|-+++-+.+.-.+.+.+.--+..|+..|+..+.+++..|..
T Consensus       157 ehgvvsW-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia  235 (713)
T KOG2999|consen  157 EHGVVSW-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA  235 (713)
T ss_pred             hhceeee-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence            4322111 11122233333333321 123467778888888999888877777888889999999999999999999999


Q ss_pred             HHHHHhcCCc
Q psy14164        249 LIACLCTDNN  258 (361)
Q Consensus       249 ll~~L~~~~~  258 (361)
                      ++..+...-+
T Consensus       236 l~nal~~~a~  245 (713)
T KOG2999|consen  236 LLNALFRKAP  245 (713)
T ss_pred             HHHHHHhhCC
Confidence            9999987744

>KOG0414|consensus

Probab=96.27  E-value=0.1  Score=57.46  Aligned_cols=144  Identities=16%  Similarity=0.236  Sum_probs=113.0

Q ss_pred             CCH-HHHHHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164        141 GGL-PVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       141 Gg~-~~Lv~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      |-+ |.++...+    .++++++.+|.-+||.+.--.....     .--+|.|+..+...+++.+|.+++-+++-++--+
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            444 44555663    4689999999999999875443322     2368999999997788999999999999988767


Q ss_pred             hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      |.-.+.+-     +.|..-|+..+..||+-|...+++|...+     .+.-.|.+.-++.+|..+   +..++..|=...
T Consensus       993 pnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~---~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  993 PNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP---NAEISDLAKSFF 1059 (1251)
T ss_pred             ccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC---cHHHHHHHHHHH
Confidence            76555543     45677788899999999999999998653     444579999999999999   999999888777


Q ss_pred             HHHHhcC
Q psy14164        296 ASLIKDS  302 (361)
Q Consensus       296 ~~L~~~~  302 (361)
                      ..|...+
T Consensus      1060 ~Els~k~ 1066 (1251)
T KOG0414|consen 1060 KELSSKG 1066 (1251)
T ss_pred             HHhhhcc
Confidence            7777655

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.21  E-value=0.084  Score=51.08  Aligned_cols=136  Identities=19%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      -.++.++.++.+++..+|..|++.++.+-.           .-++|.|..++.. .+..+|..|+++|+.+  +++.   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~~---  105 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CChh---
Confidence            368889999999999999999999776542           2378999999986 6779999999988876  2232   


Q ss_pred             HHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCC-----------ch--------------HHH----HHH---hC
Q psy14164        221 EFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDN-----------NQ--------------VKQ----VLL---SM  267 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~-----------~~--------------~~~----~l~---~~  267 (361)
                            .++.|+.+|. +.+..||..|++++..+-...           +.              ++.    .+.   ..
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~  179 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP  179 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence                  3566677787 578999999999888775432           00              111    111   22


Q ss_pred             CcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       268 g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..++.+..++...   +..+|..+..+|..+....
T Consensus       180 ~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         180 EAIPLLIELLEDE---DADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch
Confidence            3466777777777   7788888888888888764

>KOG0212|consensus

Probab=96.20  E-value=0.17  Score=51.99  Aligned_cols=209  Identities=13%  Similarity=0.131  Sum_probs=123.7

Q ss_pred             HHHHHHHhhc-CCHHHHHHHHHHHHhcCC-CC---HHHHHHHHHHHHHhhc--CcccHHHHHHCCCHHHHHHhhcCCCHH
Q psy14164         84 FLLDALNSMM-VNVGAELEKIIKTLKENQ-DQ---KDICIGALDNLSDYIC--SIDYANDFLKMGGLPVLQPLLEGSDPE  156 (361)
Q Consensus        84 ~L~eal~~~~-~~~~~~mk~~l~~L~~~~-~~---~~~~~~Al~~L~~lve--~idna~~~~~~Gg~~~Lv~LL~s~~~~  156 (361)
                      .+++....+. .++.+.|.+++..|.+.- .+   ...| .+|--++-..-  ..+.+.  .-.+.++|++.|+..++..
T Consensus        23 elEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~~~~--Y~~~iv~Pv~~cf~D~d~~   99 (675)
T KOG0212|consen   23 ELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIKDAG--YLEKIVPPVLNCFSDQDSQ   99 (675)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccccHH--HHHHhhHHHHHhccCccce
Confidence            3555566665 678999999999765422 11   1222 33333333321  334444  4456799999999999999


Q ss_pred             HHHHHHHHHHHHhhcCH----------------------------------HHHHHHHhcC---hHHHHHHhhcc---CC
Q psy14164        157 LRWRAAETVADIVQNNP----------------------------------FSQNFIIQTD---FLNLLLTSIEH---DS  196 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqnn~----------------------------------~~q~~v~~~g---~l~~Ll~LL~~---~~  196 (361)
                      ||-.||..+-|++.--.                                  -.++.+.+..   -++.++.+|+.   ..
T Consensus       100 vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~  179 (675)
T KOG0212|consen  100 VRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI  179 (675)
T ss_pred             eeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcC
Confidence            99999999999874300                                  0011111111   12222222221   12


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHh--hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCCcHH
Q psy14164        197 NTTVQVKSLYAVSCLVRENEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVE  271 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~--~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g~i~  271 (361)
                      ++..|...+.=|.-+-.  .+-. .|+.  ..-++.|...|...+..||.-+-.+++.++.+   .|+..   --...++
T Consensus       180 n~~tR~flv~Wl~~Lds--~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~  253 (675)
T KOG0212|consen  180 NPMTRQFLVSWLYVLDS--VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMIN  253 (675)
T ss_pred             CchHHHHHHHHHHHHhc--CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccchh
Confidence            33444444444443321  1111 1221  12345677778888999998888888877754   34332   1235688


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      .++.-+.++   ++.++.+|+.-+..++.-.+.
T Consensus       254 vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~  283 (675)
T KOG0212|consen  254 VLVPHLQSS---EPEIQLKALTWIQEFVKIPGR  283 (675)
T ss_pred             hccccccCC---cHHHHHHHHHHHHHHhcCCCc
Confidence            889999998   999999999999888876654

>KOG2734|consensus

Probab=96.16  E-value=0.86  Score=45.70  Aligned_cols=209  Identities=14%  Similarity=0.181  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---------HHHHHHHHhcCh
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN---------PFSQNFIIQTDF  184 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn---------~~~q~~v~~~g~  184 (361)
                      .-+...+++.+--+....|---.|+++.|++.|+.||.|.+.+|-...+..+-.++--+         ...-+++++.++
T Consensus        98 E~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~v  177 (536)
T KOG2734|consen   98 EVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQV  177 (536)
T ss_pred             hccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccH
Confidence            34567778888888888888889999999999999999999999999999988876431         133456778899


Q ss_pred             HHHHHHhhccCCCHHHH------HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH-hhcc-CCHHHHHHHHHHHHHHhcC
Q psy14164        185 LNLLLTSIEHDSNTTVQ------VKSLYAVSCLVRENEECLKEFIKRDGFSVLLR-CIQS-KKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~------~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~-lL~s-~~~~v~~kA~~ll~~L~~~  256 (361)
                      ++.|++-+.. -+++++      ..++.-+-|++--.+.....+.+.|-+..|.. +-.. +-..-+.-|.-.++-+...
T Consensus       178 laLLvqnveR-LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~  256 (536)
T KOG2734|consen  178 LALLVQNVER-LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN  256 (536)
T ss_pred             HHHHHHHHHH-hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence            9999998764 223333      34455566777655666667777777776655 3333 2345556666667767776


Q ss_pred             CchHHHHHHhCCcHHHHHHhccCCC------CCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHH
Q psy14164        257 NNQVKQVLLSMGMVEQMCVLIDIED------ALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       257 ~~~~~~~l~~~g~i~~Lv~lL~~~~------~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~  323 (361)
                      +.+.+..+-..+++..++.-|..-.      ....++.++...+|++++......-..-...++.+.+++.+.
T Consensus       257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~  329 (536)
T KOG2734|consen  257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE  329 (536)
T ss_pred             CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH
Confidence            6667777778888888887765421      113467888888888888765443333344445555555544

>KOG1991|consensus

Probab=96.08  E-value=0.37  Score=52.35  Aligned_cols=167  Identities=10%  Similarity=0.225  Sum_probs=100.5

Q ss_pred             CCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----
Q psy14164         77 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-----  151 (361)
Q Consensus        77 ~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-----  151 (361)
                      +++++.+..++       |+.+.+++-+.+..+.....   .+|+.-+-.++. -.-+..|-  |.++.++..|.     
T Consensus       359 ~~d~deelwe~-------DP~EYiR~~~Di~ed~~sp~---~Aa~~~l~~~~~-KR~ke~l~--k~l~F~~~Il~~~~~~  425 (1010)
T KOG1991|consen  359 FNDEDEELWEE-------DPYEYIRKKFDIFEDGYSPD---TAALDFLTTLVS-KRGKETLP--KILSFIVDILTRYKEA  425 (1010)
T ss_pred             CCcccHHHHhc-------CHHHHHHhcCchhcccCCCc---HHHHHHHHHHHH-hcchhhhh--hHHHHHHHHHHhhccc
Confidence            44455555555       77777777777776654331   233333333332 11122222  34666677666     


Q ss_pred             -C--CCHHHHHHHHHHHHHHhh----cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh-cCChhhHHHHH
Q psy14164        152 -G--SDPELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV-RENEECLKEFI  223 (361)
Q Consensus       152 -s--~~~~vr~~Aa~~Lg~iaq----nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~-r~~~~~~~~f~  223 (361)
                       .  .++.-+.-|++++|+++.    +.|. . ..++.=.++++...+++ +---+|.+|||.++..+ -+.+.. ..+ 
T Consensus       426 ~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~-~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d~-~~l-  500 (1010)
T KOG1991|consen  426 SPPNKNPRQKDGALRMVGSLASILLKKSPY-K-SQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKDP-NNL-  500 (1010)
T ss_pred             CCCccChhhhhhHHHHHHHHHHHHccCCch-H-HHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCCh-HHH-
Confidence             2  345666779999999873    2221 1 11222245555556665 44589999999999998 333221 222 


Q ss_pred             hhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164        224 KRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQ  262 (361)
Q Consensus       224 ~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~  262 (361)
                       ...+.....+|. +.+..|+..|+.++..+.++.+....
T Consensus       501 -~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  501 -SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             -HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence             346677788888 77899999999999999998664433

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.05  E-value=0.13  Score=52.31  Aligned_cols=131  Identities=14%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             CHHHHHHHHhcChHHHHHHhh---------ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC----
Q psy14164        172 NPFSQNFIIQTDFLNLLLTSI---------EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK----  238 (361)
Q Consensus       172 n~~~q~~v~~~g~l~~Ll~LL---------~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~----  238 (361)
                      ++...+.++...++..|+++-         ....+..+...|+-+|+|++-.++.+++.|.+.|+.+.++..|+..    
T Consensus        11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~   90 (446)
T PF10165_consen   11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS   90 (446)
T ss_pred             CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence            455556666667777777776         4446779999999999999999999999999999999999999865    


Q ss_pred             -CHHHH---HHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC----C---C-------CChhHHHHHHHHHHHHH
Q psy14164        239 -KEKLV---IKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE----D---A-------LDTEMNEHLLSALASLI  299 (361)
Q Consensus       239 -~~~v~---~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~----~---~-------~d~~~~e~al~aL~~L~  299 (361)
                       +..+.   .+..|++++   ..+..+..+++. +++..++..|...    +   .       .+.....-+|.++.++.
T Consensus        91 ~~~d~~Fl~~RLLFLlTa---~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit  167 (446)
T PF10165_consen   91 QPSDVEFLDSRLLFLLTA---LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT  167 (446)
T ss_pred             CChhHHHHHHHHHHHHhc---CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence             44444   344444443   345566666544 6777666655432    0   0       12334455677777887


Q ss_pred             hcChHH
Q psy14164        300 KDSPEA  305 (361)
Q Consensus       300 ~~~~~~  305 (361)
                      ..++..
T Consensus       168 ~~~~~~  173 (446)
T PF10165_consen  168 LHYPKS  173 (446)
T ss_pred             hccCcc
Confidence            766643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=96.03  E-value=0.039  Score=51.01  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy14164         48 NLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNV--GAELEKIIKTLKENQDQKDICIGALDNLS  125 (361)
Q Consensus        48 ~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~~~~--~~~mk~~l~~L~~~~~~~~~~~~Al~~L~  125 (361)
                      =+.|||+|++-.+.....+=+ ..++..++||.|.-.  |+|..+.+.|  +++      +|..+..   .+      ++
T Consensus       110 ildGLLHWaVcpsa~A~Dpfp-~~~~~~~lSPqrlaL--EaLcKLsV~e~NVDl------iLaTpp~---sR------lE  171 (257)
T PF12031_consen  110 ILDGLLHWAVCPSAEAQDPFP-TAGPHSPLSPQRLAL--EALCKLSVIENNVDL------ILATPPF---SR------LE  171 (257)
T ss_pred             HHHHHHHHHhccchhccCCCC-CCCCCCCCCHHHHHH--HHHHHhheeccCcce------eeeCCCH---HH------HH
Confidence            479999999987653322221 113345788866553  6666665322  111      1222211   12      22


Q ss_pred             HhhcCcccHHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHH-HHHHhcChHHHHHHhhcc
Q psy14164        126 DYICSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       126 ~lve~idna~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q-~~v~~~g~l~~Ll~LL~~  194 (361)
                      .+               +..|+++|. ..+...|+.|.-+|.++++...... ....+.+.+..|+..+..
T Consensus       172 ~l---------------~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~  227 (257)
T PF12031_consen  172 RL---------------FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED  227 (257)
T ss_pred             HH---------------HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence            22               456677774 5788999999999999999887765 555678999999999985

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.02  E-value=0.041  Score=41.59  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      ...|+|++|+++.. +.-...+-+.++++.++++..+.+..++|-.|.|+|+=+++ +....+.+
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L   66 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEIL   66 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHH
Confidence            46799999999974 44555666789999999999987888999999999998887 44444433

>KOG1062|consensus

Probab=95.91  E-value=0.14  Score=54.39  Aligned_cols=154  Identities=17%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      .|-+.++|++.++-||..|+-|...+....|..-+.|     ++...++|.+ .+..|-...+.-+-.||.-++.....|
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~f  217 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYF  217 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence            4566779999999999999999999999888766554     5666777764 455677777777777887777777777


Q ss_pred             HhhCcHHHHHHhhcc---------------CCHHHHHHHHHHHHHHhcCCchHHHHHH----------------------
Q psy14164        223 IKRDGFSVLLRCIQS---------------KKEKLVIKSCFLIACLCTDNNQVKQVLL----------------------  265 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s---------------~~~~v~~kA~~ll~~L~~~~~~~~~~l~----------------------  265 (361)
                      -+  -++-|+..|+.               +++=+|.++..++.-|-+++++..+.+-                      
T Consensus       218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY  295 (866)
T KOG1062|consen  218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY  295 (866)
T ss_pred             HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            65  44444444431               3677788887777766655442211110                      


Q ss_pred             ----------hC-C----cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        266 ----------SM-G----MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       266 ----------~~-g----~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                                .. |    .+..|.++|.+.   |..+|=.+|.+|...++..|++++
T Consensus       296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~---d~NirYvaLn~L~r~V~~d~~avq  349 (866)
T KOG1062|consen  296 ECVRTIMDIRSNSGLRVLAINILGKFLLNR---DNNIRYVALNMLLRVVQQDPTAVQ  349 (866)
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhcCC---ccceeeeehhhHHhhhcCCcHHHH
Confidence                      01 1    245667777777   888888888888888888876544

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=95.89  E-value=0.75  Score=44.56  Aligned_cols=149  Identities=15%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhc-------C----hHHHHHHhhc---c--CCCHHHHHHHHHHHHHHhcCChh
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQT-------D----FLNLLLTSIE---H--DSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-------g----~l~~Ll~LL~---~--~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      .-++|.+|+.|+-....+|+..|..+++.       +    ....|+.-|-   .  ..++---..|+..++.++++++.
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            56899999999999999999999999854       1    1112444332   1  12444456899999999999998


Q ss_pred             hHHHHHhh------C------cHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCC-cHHHHHHhccC
Q psy14164        218 CLKEFIKR------D------GFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMG-MVEQMCVLIDI  279 (361)
Q Consensus       218 ~~~~f~~~------g------gi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g-~i~~Lv~lL~~  279 (361)
                      +.....+.      .      -++.+..+|..     .+.+++.--..++..-+.+++.....|++.+ .++.|+.....
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~  210 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ  210 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence            86666542      1      13445555543     3778888778888887888898888888776 69999998654


Q ss_pred             CCCCChhHHHHHHHHHHHHHhcC
Q psy14164        280 EDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       280 ~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .++.+.-++--+.-.|.-+...+
T Consensus       211 ~~~~~~~VqGL~A~LLGicyef~  233 (312)
T PF04869_consen  211 SSSEDVLVQGLCAFLLGICYEFS  233 (312)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHT-
T ss_pred             CCCCcchHHHHHHHHHHHHHHhc
Confidence            44445566666666666665543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG1059|consensus

Probab=95.74  E-value=2  Score=45.56  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS  175 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~  175 (361)
                      .+|.|+.=|..+++.|+.+|..+|+.+|..||+.
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            5888999999999999999999999999988854

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=95.71  E-value=0.22  Score=42.63  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      ++..|.+-|.++++.++..|+.+|..+++| .+.....+.+.+.+..|++++....+..|+.+++..|-+-...
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            466777788899999999999999999999 4668888889999999999998667789999999888876543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.71  E-value=1  Score=42.34  Aligned_cols=187  Identities=13%  Similarity=0.172  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhhcCcccHH-HH-HHCCCHHHHHHh-------hcCCC--HHHHHHHHHHHH--HHhhcCHHHHHHHH
Q psy14164        114 KDICIGALDNLSDYICSIDYAN-DF-LKMGGLPVLQPL-------LEGSD--PELRWRAAETVA--DIVQNNPFSQNFII  180 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~-~~-~~~Gg~~~Lv~L-------L~s~~--~~vr~~Aa~~Lg--~iaqnn~~~q~~v~  180 (361)
                      .+.++.|+.+|..--+..++-. -+ +.-|.+..|++=       |..+.  +..-.+.|.+|+  .++..+|+.+..|+
T Consensus         9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl   88 (262)
T PF04078_consen    9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFL   88 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred             cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            4678888888877766654332 22 244556666542       22221  212222333332  23445899999999


Q ss_pred             hcChHHHHHHhhccC----CCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        181 QTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~----~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      ++...-.|...|+..    +-+.+|-.++..|++++..... .+.-+.....+|...+.|..++.-.|.-|.|.+..+..
T Consensus        89 ~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~  168 (262)
T PF04078_consen   89 KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL  168 (262)
T ss_dssp             HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence            998766666666532    2357999999999999986544 44445567789999999999999999999999999987


Q ss_pred             CCchH------HHHHH-hCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        256 DNNQV------KQVLL-SMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       256 ~~~~~------~~~l~-~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      .+.-.      .+.+. =..++..++.-| ..+   ++.+..++.++-..|..+..
T Consensus       169 dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  169 DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTSTT
T ss_pred             chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHHHHHHccCHH
Confidence            54311      11111 123444555444 344   78888999999888887653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2734|consensus

Probab=95.68  E-value=2.7  Score=42.26  Aligned_cols=205  Identities=17%  Similarity=0.168  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHH-hh-cCCCHHHHHHHHHHHHHHhhc
Q psy14164         96 VGAELEKIIKTLKENQDQ-KDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQP-LL-EGSDPELRWRAAETVADIVQN  171 (361)
Q Consensus        96 ~~~~mk~~l~~L~~~~~~-~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~-LL-~s~~~~vr~~Aa~~Lg~iaqn  171 (361)
                      -..++-+.++-|.....+ -.-...++..++.+++- .+.....++.|-+.-|+. +- ..+-...+..|..+++-+-||
T Consensus       177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~  256 (536)
T KOG2734|consen  177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN  256 (536)
T ss_pred             HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence            344555555555443222 23455666677777642 233455566665555555 33 246677889999999999999


Q ss_pred             CHHHHHHHHhcChHHHHHHhhc----cCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHH
Q psy14164        172 NPFSQNFIIQTDFLNLLLTSIE----HDS----NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLV  243 (361)
Q Consensus       172 n~~~q~~v~~~g~l~~Ll~LL~----~~~----~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~  243 (361)
                      +...+..+-...++-.|++-+.    +++    ....-.+...+|+++++ .+.+...|+...|++...-.++. ....+
T Consensus       257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr  334 (536)
T KOG2734|consen  257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSR  334 (536)
T ss_pred             CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhh
Confidence            9998888888899999888764    221    12456778889999988 57789999999999987777765 45556


Q ss_pred             HHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhcc-CCC------CCChhHHHHHHHHHHHHHhcC
Q psy14164        244 IKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLID-IED------ALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       244 ~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~-~~~------~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..|.-++-++..+++  .....+++.+++..+..+.. .+.      ..-.+.-|++...|+++...+
T Consensus       335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            667777888888755  67788888888777666543 220      113456788999998888766

>KOG1058|consensus

Probab=95.68  E-value=0.28  Score=51.96  Aligned_cols=148  Identities=16%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      +..+..+|.++++.|+-.|+..|-++. ++|..-..     +...++.|+...++-.++.-.+--|+.+...+....+  
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~--  316 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ--  316 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH--
Confidence            444555666666666666666666555 34433222     3344566665545545665556666666543333322  


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                         |-+--+++.|+++|..+++|+..+.-.|+++. -+..-.+.+..+...--.  +  .+++-++|.-.+.++..++..
T Consensus       317 ---~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e--~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  317 ---GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--E--SDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             ---HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--c--cccchHHHHHHHHHHHHHhhc
Confidence               33445678899999999999999999998763 222222222222111110  0  122446777777777777777


Q ss_pred             ChHH
Q psy14164        302 SPEA  305 (361)
Q Consensus       302 ~~~~  305 (361)
                      .|+.
T Consensus       390 Fp~~  393 (948)
T KOG1058|consen  390 FPEV  393 (948)
T ss_pred             ChHH
Confidence            6653

>KOG2274|consensus

Probab=95.65  E-value=1.1  Score=48.48  Aligned_cols=151  Identities=13%  Similarity=0.132  Sum_probs=108.3

Q ss_pred             CHHhHHHHHHHHHhhc-CCH-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh
Q psy14164         78 NEANRGFLLDALNSMM-VNV-------GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL  149 (361)
Q Consensus        78 s~e~~~~L~eal~~~~-~~~-------~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L  149 (361)
                      |+|-.-.|.|+|..+. .|+       .+..-..+.++...+++......+.+-+++++..-+|...+.. -.+|.|+..
T Consensus       543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisi  621 (1005)
T KOG2274|consen  543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISV  621 (1005)
T ss_pred             cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHH
Confidence            4455677888888876 221       2234455566666666767777788888888876566555543 369999999


Q ss_pred             hcCCC----HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        150 LEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       150 L~s~~----~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                      |..+.    +.+...|+.+|.+++.+.|.-=...+-.-++|++.++.-|..+..+-..+--+|+.++....++....-..
T Consensus       622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e  701 (1005)
T KOG2274|consen  622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE  701 (1005)
T ss_pred             HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC
Confidence            98876    88999999999999988554322222244899999987776677888899999999998877776666666


Q ss_pred             CcHH
Q psy14164        226 DGFS  229 (361)
Q Consensus       226 ggi~  229 (361)
                      +|+.
T Consensus       702 ~g~~  705 (1005)
T KOG2274|consen  702 PGHN  705 (1005)
T ss_pred             CCcc
Confidence            6655

>KOG1789|consensus

Probab=95.65  E-value=0.26  Score=54.07  Aligned_cols=142  Identities=16%  Similarity=0.237  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHh----cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        156 ELRWRAAETVADIVQNNPFSQNFIIQ----TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~----~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      +=...++.+|.|+.+-||.....|-.    -|.++.+..++....+..++.-|+..|+-++. +.+....+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            34567999999999999976655433    37888888888876777899999999988776 66788888889988999


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        232 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       232 v~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..+|+|. +..|..+...++.|++. ++......+.|.+..+..++-..+  +.+.|..+...|..+..+.
T Consensus      1819 L~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~--~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTN--SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccC--cHHHHHHHHHHHHHhhhcc
Confidence            9988764 56778899999999774 566677778888888887776542  6788888998888887643

>KOG2973|consensus

Probab=95.59  E-value=0.49  Score=45.38  Aligned_cols=151  Identities=20%  Similarity=0.227  Sum_probs=97.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH-HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI-IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v-~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      .-++.+|.+.++.||..|...+-.++..  ..|... .+.-.++.+.+|+.. .+.  ...|+.||-|+... +...+.+
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~-~~l~~~l   79 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQK-EELRKKL   79 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence            4578899999999999999888877765  233222 123578889999985 333  56789999999874 3344555


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh------CCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~------~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      ++. -+..++..+..+...+-.-+|.+++||++.+......+..      .|...........+-+...+ ..+....+.
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHH
Confidence            544 6677777777777888899999999998875544433332      34444444444443111112 244455555


Q ss_pred             HHHhcC
Q psy14164        297 SLIKDS  302 (361)
Q Consensus       297 ~L~~~~  302 (361)
                      +|.+..
T Consensus       158 nls~~~  163 (353)
T KOG2973|consen  158 NLSQFE  163 (353)
T ss_pred             HHhhhh
Confidence            665543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.55  E-value=0.76  Score=44.03  Aligned_cols=110  Identities=18%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-
Q psy14164        141 GGLPVLQ-PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-  218 (361)
Q Consensus       141 Gg~~~Lv-~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-  218 (361)
                      +.+..|+ ..++|+++.||..|.++||-++--+.....     ..++.+++.++.+ +..++..|+.+|.-++.-+... 
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            3455554 688999999999999999999987764332     2578888888764 7899999999999887755432 


Q ss_pred             HHHHHh-------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        219 LKEFIK-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       219 ~~~f~~-------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      ......       ..-+..+...|.+.+..+|.-|+-.++.|.-.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~  144 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS  144 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            111111       23456778888888999999999999988765

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=95.49  E-value=0.82  Score=44.32  Aligned_cols=150  Identities=17%  Similarity=0.189  Sum_probs=95.1

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhh-------C----cHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCCch
Q psy14164        197 NTTVQVKSLYAVSCLVRENEECLKEFIKR-------D----GFSVLLRCIQ------SKKEKLVIKSCFLIACLCTDNNQ  259 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-------g----gi~~Lv~lL~------s~~~~v~~kA~~ll~~L~~~~~~  259 (361)
                      .-.+|..|++++-+.+.+|+..+..|+..       +    ....|...|-      +.++----.|+.++.+++.++++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            56899999999999999999999999851       1    1112444444      33444455789999999999888


Q ss_pred             HHHHHHhC------------CcHHHHHHhccCC--CCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHH
Q psy14164        260 VKQVLLSM------------GMVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE  325 (361)
Q Consensus       260 ~~~~l~~~------------g~i~~Lv~lL~~~--~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~  325 (361)
                      .++.+.+-            ..++.+..+|-..  .+.+..++.-.|..|..-+-+||.++...-..+-.+..+++. . 
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~-~-  208 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEF-S-  208 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHH-H-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHH-h-
Confidence            87776542            2466677777652  134778888889999999999999998875554444444443 1 


Q ss_pred             hhcChhhhHHHHHHHHHHHHHhcC
Q psy14164        326 KHAGNEVYHKELEYVNSVLTEVFE  349 (361)
Q Consensus       326 ~l~~~~e~~~e~~~~~~il~~~f~  349 (361)
                       .+..++..-+...|.-+|=.||.
T Consensus       209 -~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  209 -NQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             -S--TCCCHHHHHHHHHHHHHHHH
T ss_pred             -hcCCCCcchHHHHHHHHHHHHHH
Confidence             11122333345577777776665

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG0213|consensus

Probab=95.48  E-value=0.36  Score=51.15  Aligned_cols=180  Identities=9%  Similarity=0.132  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHH---HHH
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN---LLL  189 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~-Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~---~Ll  189 (361)
                      .+..-..|.++..++.-++...-+-.+ |.+|.|...|++.+..|++.+...+|.|+.+.|+.   +--...+.   -|+
T Consensus       855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~---v~aREWMRIcfeLl  931 (1172)
T KOG0213|consen  855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY---VSAREWMRICFELL  931 (1172)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc---CCHHHHHHHHHHHH
Confidence            355556666776666666555544444 45799999999999999999999999999998862   21122232   366


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhcCChhh---------------HHH---------HHh-hCcH---HHHHHhhccCCHH
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVRENEEC---------------LKE---------FIK-RDGF---SVLLRCIQSKKEK  241 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~---------------~~~---------f~~-~ggi---~~Lv~lL~s~~~~  241 (361)
                      .+|.. ...++|+.|...+++|++---+.               +..         +.+ +|-+   |.|+.=-..+...
T Consensus       932 elLka-hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n 1010 (1172)
T KOG0213|consen  932 ELLKA-HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN 1010 (1172)
T ss_pred             HHHHH-HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH
Confidence            67765 56799999999999998642221               000         111 1212   2222222345666


Q ss_pred             HHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        242 LVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       242 v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ||.-.+-+++.+..- +...++++.  -+.+.|-..|...   |.-.|..+..++.+++-++
T Consensus      1011 VQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDr---D~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDR---DLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccc---cHHHHHHHHHHHHHHhcCC
Confidence            666655555555432 222233322  2334444444444   6666777777777776554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.35  E-value=2  Score=41.85  Aligned_cols=158  Identities=17%  Similarity=0.212  Sum_probs=117.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHhc-C-hHHHHHHhhccC---CC---------HHHHHHHH-H
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQT-D-FLNLLLTSIEHD---SN---------TTVQVKSL-Y  206 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq-nn~~~q~~v~~~-g-~l~~Ll~LL~~~---~~---------~~v~~~Al-~  206 (361)
                      +..+.+.|++....+..++++++..++. ++......++.. + -++.|-+++...   ..         ..+|...+ +
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788889999999999999999999999 887777777654 2 244455555321   11         16777666 4


Q ss_pred             HHHHHhcCChhhHHHHHhhC-cHHHHHHhhccCCHHHHHHHHHHHH-HHhcCC---chHHHHHHhCCcHHHHHHhccCCC
Q psy14164        207 AVSCLVRENEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIA-CLCTDN---NQVKQVLLSMGMVEQMCVLIDIED  281 (361)
Q Consensus       207 ALS~l~r~~~~~~~~f~~~g-gi~~Lv~lL~s~~~~v~~kA~~ll~-~L~~~~---~~~~~~l~~~g~i~~Lv~lL~~~~  281 (361)
                      .||-+..+++.....++..+ -+..+.+.|..++..+.......+. +++.+.   ...+..+....++..|+.+...+ 
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~-  216 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD-  216 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc-
Confidence            55666666777777787655 4678888888888888888888887 455542   35667777888999999988877 


Q ss_pred             CCCh----hHHHHHHHHHHHHHhcCh
Q psy14164        282 ALDT----EMNEHLLSALASLIKDSP  303 (361)
Q Consensus       282 ~~d~----~~~e~al~aL~~L~~~~~  303 (361)
                        +.    .+.+.+-..|..++.+..
T Consensus       217 --~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  217 --GEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             --CCcccchHHHHHHHHHHHHhcCCC
Confidence              55    889999999988887553

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=95.31  E-value=0.36  Score=45.31  Aligned_cols=196  Identities=16%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             CCCCHHhHHHHHHHHHhhcCC-----HHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCC--HHHH
Q psy14164         75 ASMNEANRGFLLDALNSMMVN-----VGA-ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGG--LPVL  146 (361)
Q Consensus        75 ~~~s~e~~~~L~eal~~~~~~-----~~~-~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg--~~~L  146 (361)
                      .++++++...|.+.++.+..+     ... ...-.+..+..  ...+.+..++|-+.-++-+......+...++  ...+
T Consensus        34 ~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l  111 (268)
T PF08324_consen   34 LKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLL  111 (268)
T ss_dssp             T-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHH
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHH
Confidence            378999999999988887632     122 22333333332  4557799999999999887776666665542  3445


Q ss_pred             HHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc-C-hHHHHHHhhccCC---CHHHHHHHHHHHHHHhcCChh
Q psy14164        147 QPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT-D-FLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       147 v~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-g-~l~~Ll~LL~~~~---~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ..++.    +..+..+..++++++|+..+.+. +..+.+. + .+...+..+....   +..+|..++..+-|++.....
T Consensus       112 ~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~  190 (268)
T PF08324_consen  112 STLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK  190 (268)
T ss_dssp             HHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence            55443    25788999999999999976554 4445443 3 3444444444322   568888888888777532111


Q ss_pred             hH-HHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHH
Q psy14164        218 CL-KEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  273 (361)
Q Consensus       218 ~~-~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~L  273 (361)
                      .. ..=....-+..+++.+..  .+..+.-+++-++.+|+..++.........|+-..+
T Consensus       191 ~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~  249 (268)
T PF08324_consen  191 NRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVL  249 (268)
T ss_dssp             CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHH
Confidence            00 000001124455553332  589999999999999997776655555545554433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1242|consensus

Probab=95.29  E-value=0.82  Score=47.38  Aligned_cols=169  Identities=17%  Similarity=0.216  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHHHHhh
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      ..|..+++-|..+.+..+..-.++--..+|.+..-|....++||..+-.+|-.++.  .||..|.      .+|.|+..+
T Consensus       269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l  342 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL  342 (569)
T ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence            56788888888777766666666666778889999999999999999988877654  4666554      589999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH----HHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHHHh
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF----SVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLS  266 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi----~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~  266 (361)
                      .+. .. --.+++..|+.-.      +-.+++...+    |.|.+.|...+..++++++-.+.|++..  ++....-++.
T Consensus       343 ~dp-~~-~~~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~  414 (569)
T KOG1242|consen  343 ADP-SC-YTPECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP  414 (569)
T ss_pred             cCc-cc-chHHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence            863 21 2234555555421      1223333444    4444555556788889999999999875  3333322221


Q ss_pred             CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                       .+++.|=..+...   .+++|+.+.++|..+...
T Consensus       415 -~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  415 -SLLPGLKENLDDA---VPEVRAVAARALGALLER  445 (569)
T ss_pred             -HHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHH
Confidence             2445555555555   789999999999877753

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.25  E-value=0.036  Score=34.37  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      .+|.+++++++ ++..||..|+++|+.++++
T Consensus         1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence            47999999995 7889999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0301|consensus

Probab=95.21  E-value=1.4  Score=46.24  Aligned_cols=191  Identities=18%  Similarity=0.198  Sum_probs=105.8

Q ss_pred             CHHhHHHHHHHHHhhcC---CHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCC----CHHHHHH
Q psy14164         78 NEANRGFLLDALNSMMV---NVGAELE--KIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMG----GLPVLQP  148 (361)
Q Consensus        78 s~e~~~~L~eal~~~~~---~~~~~mk--~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~G----g~~~Lv~  148 (361)
                      .|..+..+++.++....   ..-+.++  .+++++..  ...+.+-.||+.|..++.+.-....|+..-    -+..++.
T Consensus       519 ~~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~  596 (745)
T KOG0301|consen  519 NPDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIP  596 (745)
T ss_pred             CcchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhc
Confidence            34555566666555541   1111111  24444433  345778899999999998776666666521    2334444


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc---cCCCHHHHHHHHHHHHHHhcCChhh-HHHHHh
Q psy14164        149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRENEEC-LKEFIK  224 (361)
Q Consensus       149 LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~  224 (361)
                      .++ .++..+..++++|.|+..| |..++.+...  +..++..+.   ..++..++    -|++.++-++... .+.-.+
T Consensus       597 ~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~  668 (745)
T KOG0301|consen  597 ILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQ  668 (745)
T ss_pred             ccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccc
Confidence            444 5678899999999999976 7777777654  333333332   11222332    2333333221111 111122


Q ss_pred             hCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164        225 RDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI  279 (361)
Q Consensus       225 ~ggi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~  279 (361)
                      .+|.+.|..++..     ++..-.-++.-+|.+|+..++..++.....+ +..+++-++.
T Consensus       669 ~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~-v~sia~~~~~  727 (745)
T KOG0301|consen  669 LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRS-VDSIAKKLKE  727 (745)
T ss_pred             cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcC-HHHHHHHHHH
Confidence            5677776666553     2444556677788898887665555544333 4555555543

>KOG1240|consensus

Probab=95.17  E-value=0.83  Score=50.83  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHhcChHHHHH
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn----n~~~q~~v~~~g~l~~Ll  189 (361)
                      .+-|+.||+-|..+...++.-..+-.  .+|.++.|++.+.+.||..|+.+|..+...    ++.....|.++ .+|.|-
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~  513 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN  513 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence            37789999888888877765555443  589999999999999999999998887654    23333334443 788888


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhc
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r  213 (361)
                      .|+.+.....||..-+..|+-++.
T Consensus       514 ~l~~d~~~~~vRiayAsnla~LA~  537 (1431)
T KOG1240|consen  514 HLLNDSSAQIVRIAYASNLAQLAK  537 (1431)
T ss_pred             hhhccCccceehhhHHhhHHHHHH
Confidence            888753444666666666666653

>KOG2259|consensus

Probab=95.17  E-value=0.1  Score=54.40  Aligned_cols=149  Identities=12%  Similarity=0.165  Sum_probs=107.8

Q ss_pred             HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        135 NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       135 ~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      ..++..|+.-.+|.=|..+-.+||.+|...++.++++.|.....     .+..|+.+|+. ..+.||-+|+++|--|+.+
T Consensus       367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfND-E~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFND-EIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH
Confidence            45778888899999898888999999999999999999987654     56779999996 5679999999999998875


Q ss_pred             ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                            -.++..-++.+...|...+.++|...--++.+.=-.+.+....     ++..|...|..    -++-+.-.+.+
T Consensus       441 ------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k----yPqDrd~i~~c  505 (823)
T KOG2259|consen  441 ------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK----YPQDRDEILRC  505 (823)
T ss_pred             ------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh----CCCCcHHHHHH
Confidence                  2234455678888899889999988777776543222222222     23444444443    23334456777


Q ss_pred             HHHHHhcChH
Q psy14164        295 LASLIKDSPE  304 (361)
Q Consensus       295 L~~L~~~~~~  304 (361)
                      +..+.++++.
T Consensus       506 m~~iGqnH~~  515 (823)
T KOG2259|consen  506 MGRIGQNHRR  515 (823)
T ss_pred             HHHHhccChh
Confidence            7777777764

>KOG2956|consensus

Probab=95.14  E-value=3.4  Score=41.86  Aligned_cols=188  Identities=13%  Similarity=0.141  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc-ccHH--HHHHCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhh
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSI-DYAN--DFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQ  170 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i-dna~--~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaq  170 (361)
                      +-..++++.+..+.+. +..+++..|+.+|..+.... -.-+  .|.++  +..++..|.. .+..+|..|+++|+.+++
T Consensus       283 ~~~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~~i--L~~l~EvL~d~~~~~~k~laLrvL~~ml~  359 (516)
T KOG2956|consen  283 DQSALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFAEI--LLLLLEVLSDSEDEIIKKLALRVLREMLT  359 (516)
T ss_pred             chhHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence            3355666666666664 44578888888777765432 2222  24332  4556666755 888999999999999999


Q ss_pred             cCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHH
Q psy14164        171 NNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF  248 (361)
Q Consensus       171 nn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~  248 (361)
                      +.|.-   +.+.  =++..++..-.. +...+-..|.-+.+.++..+.+-+.       +..+..++.+.|...-.-+.-
T Consensus       360 ~Q~~~---l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iK  428 (516)
T KOG2956|consen  360 NQPAR---LFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIK  428 (516)
T ss_pred             hchHh---hhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHH
Confidence            87642   2222  244445554443 3445556666666655544433322       223344555566666666666


Q ss_pred             HHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        249 LIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       249 ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      +++.++.. ..+-.-.++ ..+.|.+++--.+.   ...+|..|..+|..+..
T Consensus       429 m~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~---SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  429 MLTKLFERLSAEELLNLL-PDIAPCVIQAYDST---SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc---hHHhhhhHHHhHHHHHH
Confidence            77777654 212121222 36788889888888   89999999999998885

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.02  E-value=2.6  Score=43.80  Aligned_cols=187  Identities=11%  Similarity=0.110  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCC-C-HHHHH-Hhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMG-G-LPVLQ-PLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~G-g-~~~Lv-~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      ...|..++..+.++++.-+- .+++.+- . +-.++ .-++ .++..+|-.|+.+|.+-.   ..+|..+-..+-...++
T Consensus       148 ~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m  223 (858)
T COG5215         148 VSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM  223 (858)
T ss_pred             hHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence            46788999999999988765 5555442 2 22333 3343 477899999999998832   23444444444444444


Q ss_pred             Hhhc---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH---HH
Q psy14164        190 TSIE---HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK---QV  263 (361)
Q Consensus       190 ~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~---~~  263 (361)
                      +...   ...+.+++.+|..++..|..-+=.-.+...+.-......+.+++++.+|...|.-+-+.+|.+.-+..   ++
T Consensus       224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~  303 (858)
T COG5215         224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY  303 (858)
T ss_pred             eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            4432   24678999999999998876544444444455556677889999999999999999998886532111   01


Q ss_pred             -------------HHhCCcHHHHHHhccCC----CCCChhHHHHHHHHHHHHHhcChH
Q psy14164        264 -------------LLSMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       264 -------------l~~~g~i~~Lv~lL~~~----~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                                   ..-.+++|-|++||...    .++|-.+...|..+|...++.+.+
T Consensus       304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd  361 (858)
T COG5215         304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD  361 (858)
T ss_pred             cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence                         11234788999999873    133455667777777777766543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=94.95  E-value=0.42  Score=40.31  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHH-HHHHHHHHHHHHhc
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT-VQVKSLYAVSCLVR  213 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~-v~~~Al~ALS~l~r  213 (361)
                      ++..|-+=|.++++.++..|+.+|..++.| .+.+...+...+.+..|.+++....+.. |+.+++..|.+-..
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            355667778899999999999999999999 5668888889999999999998754434 99999988887654

Unpublished observations. Domain of unknown function.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.92  E-value=0.29  Score=43.65  Aligned_cols=144  Identities=19%  Similarity=0.220  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhhc-CHHH----HHHHH------hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164        156 ELRWRAAETVADIVQN-NPFS----QNFII------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK  224 (361)
Q Consensus       156 ~vr~~Aa~~Lg~iaqn-n~~~----q~~v~------~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~  224 (361)
                      .||..|+.+|..+++. +++.    -..++      ....-+.|+.++-.|++..+|..|+.+|+.|..|..+-....-+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3799999999999998 4321    11111      22355667777777788999999999999999886543333222


Q ss_pred             hC----c---------------HHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHH--HHHHhCCcHHHHHHhccCCCC
Q psy14164        225 RD----G---------------FSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVK--QVLLSMGMVEQMCVLIDIEDA  282 (361)
Q Consensus       225 ~g----g---------------i~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~--~~l~~~g~i~~Lv~lL~~~~~  282 (361)
                      ..    .               ...|+.+|+.. +..+....+-+++.|+...|-.+  ..++ ..++..+..++.+.  
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~--  157 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHR--  157 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcC--
Confidence            11    1               13455556554 77788888889999998866332  1111 12345555666776  


Q ss_pred             CChhHHHHHHHHHHHHHhcCh
Q psy14164        283 LDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       283 ~d~~~~e~al~aL~~L~~~~~  303 (361)
                       |++++..++.++..++...+
T Consensus       158 -d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  158 -DPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             -CCcHHHHHHHHHHHHHcCCC
Confidence             99999999999999887553

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.83  E-value=0.28  Score=42.58  Aligned_cols=146  Identities=14%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             CHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        142 GLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       142 g~~~Lv~LL~--s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      .+..++..|.  ...+++|..|.-++..+-   +..++.+.+ -.-..+-.++.. .+..-...++.+++.+--+.+...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHH
Confidence            3556677554  477899999999999884   444444322 123333334443 223467789999999988877766


Q ss_pred             HHHHh-hCcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChh-HHHHHHHHH
Q psy14164        220 KEFIK-RDGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE-MNEHLLSAL  295 (361)
Q Consensus       220 ~~f~~-~ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~-~~e~al~aL  295 (361)
                      ..++. .|-++.++..+.  +.+..++..++-+|+.-|. + +.++.++...+++.|-++++.++  +.. ++..|+-+|
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~~--~~~~ir~~A~v~L  154 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNSK--DDSEIRVLAAVGL  154 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTCC---HH-CHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHcccc--chHHHHHHHHHHH
Confidence            66654 555677888888  7899999999999997654 3 45555555677889999996541  444 666666555


Q ss_pred             H
Q psy14164        296 A  296 (361)
Q Consensus       296 ~  296 (361)
                      .
T Consensus       155 ~  155 (157)
T PF11701_consen  155 C  155 (157)
T ss_dssp             H
T ss_pred             h
Confidence            3

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.83  E-value=1.6  Score=45.98  Aligned_cols=164  Identities=19%  Similarity=0.172  Sum_probs=93.0

Q ss_pred             HHHHhhcC----CCHHHHHHHHHHHHHHhhcCHHH---------HHHHHhcChHHHHHHhhc---cCCCHHHHHHHHHHH
Q psy14164        145 VLQPLLEG----SDPELRWRAAETVADIVQNNPFS---------QNFIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAV  208 (361)
Q Consensus       145 ~Lv~LL~s----~~~~vr~~Aa~~Lg~iaqnn~~~---------q~~v~~~g~l~~Ll~LL~---~~~~~~v~~~Al~AL  208 (361)
                      .+..++.+    .++.++..|+-.+|+++...-..         ....+....++.|...|.   +..+...+..++-||
T Consensus       435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  514 (618)
T PF01347_consen  435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL  514 (618)
T ss_dssp             HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence            34445544    45778888998988887531111         111233357777777776   334567888999999


Q ss_pred             HHHhcCChhhHHHHHhhCcHHHHHHhhccC---CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh
Q psy14164        209 SCLVRENEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT  285 (361)
Q Consensus       209 S~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~---~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~  285 (361)
                      +|+  |.+.         .++.|...+...   +..+|..|++++..+....+...        .+.+..++... ..+.
T Consensus       515 gN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~-~e~~  574 (618)
T PF01347_consen  515 GNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNT-TEDP  574 (618)
T ss_dssp             HHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-T-TS-H
T ss_pred             hcc--CCch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCC-CCCh
Confidence            998  3343         345555566554   78999999999998877665332        33445555543 2267


Q ss_pred             hHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q psy14164        286 EMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVL  344 (361)
Q Consensus       286 ~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il  344 (361)
                      ++|..|..+|   +...|.            ...|+.....+. .|.+.....|+..-|
T Consensus       575 EvRiaA~~~l---m~~~P~------------~~~l~~i~~~l~-~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  575 EVRIAAYLIL---MRCNPS------------PSVLQRIAQSLW-NEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHHHHH---HHT---------------HHHHHHHHHHHT-T-S-HHHHHHHHHHH
T ss_pred             hHHHHHHHHH---HhcCCC------------HHHHHHHHHHHh-hCchHHHHHHHHHhc
Confidence            8888776555   333343            234555544443 556667777776554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2025|consensus

Probab=94.81  E-value=0.56  Score=49.52  Aligned_cols=129  Identities=17%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      +..+.-+..+-.-.++.|.-++|+. |-+..|++-..+++..||.+.+.+|+-+..++...-+.+. .+....|+.-+..
T Consensus        60 dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhc
Confidence            4444555556666667788888774 5688888888999999999999999999976665555444 3455555444432


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHH
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIA  251 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~  251 (361)
                       ..+.||..|+.|||.+=.. + .-.   +......+..+++. ++..||+.|...|.
T Consensus       138 -rep~VRiqAv~aLsrlQ~d-~-~de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  138 -REPNVRIQAVLALSRLQGD-P-KDE---ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -cCchHHHHHHHHHHHHhcC-C-CCC---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence             3568999999999998532 1 101   12344566666665 46788887765443

>KOG1242|consensus

Probab=94.74  E-value=6.2  Score=41.07  Aligned_cols=196  Identities=15%  Similarity=0.100  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDIC-IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS  175 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~-~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~  175 (361)
                      ...++..+..+..++.+...- ...+-.+.-..+..+ ..     -..+-+.++++++...-|.-|++.++.++.|+...
T Consensus        95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~-----~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~  168 (569)
T KOG1242|consen   95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GE-----YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE  168 (569)
T ss_pred             hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HH-----HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh
Confidence            455666666666655443221 222222222222211 01     12566778999999999999999999999887653


Q ss_pred             HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                        .+.+.+.+..|-+.+....+...|.-+..+.-..+.+-.+.+...+ ..-+|.+.....+...+||..|..++..+.+
T Consensus       169 --~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi-v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 --SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI-VPILPSILTNFGDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             --hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH-HhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence              3567788888888887533323333244443333332111111111 2345566666667789999999999988877


Q ss_pred             CCc-hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhh
Q psy14164        256 DNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC  309 (361)
Q Consensus       256 ~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~  309 (361)
                      .-+ .....     +++.++.-+...   .-+....++..|..++...|.+++.|
T Consensus       246 ~~~~~aVK~-----llpsll~~l~~~---kWrtK~aslellg~m~~~ap~qLs~~  292 (569)
T KOG1242|consen  246 CLSAYAVKL-----LLPSLLGSLLEA---KWRTKMASLELLGAMADCAPKQLSLC  292 (569)
T ss_pred             hcCcchhhH-----hhhhhHHHHHHH---hhhhHHHHHHHHHHHHHhchHHHHHH
Confidence            532 22221     244444444433   45677889999998888888888766

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=94.73  E-value=0.51  Score=40.09  Aligned_cols=72  Identities=19%  Similarity=0.258  Sum_probs=59.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHH---HHHHHHHHHHHHhc
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLVR  213 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~---v~~~Al~ALS~l~r  213 (361)
                      ++..|.+-|.|+++.++..|+.+|..++.|. +.++..+.....+..|.+++.......   |+.+++-.|..-..
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            3666777889999999999999999999997 678888888899999999998654444   89998877776543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.71  E-value=0.63  Score=39.66  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=60.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhc
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r  213 (361)
                      ++..|.+-|+|+++.+...|+.+|-.+++|. +.++..|...+.+.-|++++..     ..+..|+.+.+..|-.-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4667778889999999999999999999986 5688888899999999999963     2567899998877766544

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.63  E-value=0.11  Score=45.83  Aligned_cols=92  Identities=21%  Similarity=0.395  Sum_probs=67.8

Q ss_pred             HHHHHHHHhh--cCcccHHHHHHCCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhhcCHHHHHHHHh-cChHH
Q psy14164        119 GALDNLSDYI--CSIDYANDFLKMGGLPVLQPLLEG---------SDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLN  186 (361)
Q Consensus       119 ~Al~~L~~lv--e~idna~~~~~~Gg~~~Lv~LL~s---------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g~l~  186 (361)
                      ..+..|...+  ..+++...|+..||+..|+.+|..         .+..+...+++||-.+. |+......+++ .+++.
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence            3344444433  345788899999999999998762         44578899999998888 55555566655 68999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        187 LLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       187 ~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      .|+..|.+ ++..+|.-++..|+.+|
T Consensus       162 ~i~~~L~s-~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDS-PNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence            99999986 67899999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.63  E-value=0.51  Score=41.30  Aligned_cols=111  Identities=16%  Similarity=0.264  Sum_probs=79.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC--hHHHHHHhhccCCCHHHHHHHHHHHHHHh---cCChh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHDSNTTVQVKSLYAVSCLV---RENEE  217 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g--~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~---r~~~~  217 (361)
                      +..+..+|++.++.-|+.++.+++..++.++.  +.+.+.|  .+..|+++|+...+..+++.|+.+|+.|.   ++.+.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            56788899999999999999999999988742  3444443  58889999998777788999999988765   56666


Q ss_pred             hHHHHHhhCcHHH----HHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        218 CLKEFIKRDGFSV----LLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       218 ~~~~f~~~ggi~~----Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      -..++.... ++.    ++.++++  ..+...++.++..+....|
T Consensus       105 l~Rei~tp~-l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  105 LTREIATPN-LPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             hHHHHhhcc-HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            556665333 333    3333332  5666777777777776554

>KOG1248|consensus

Probab=94.63  E-value=8.6  Score=43.05  Aligned_cols=167  Identities=17%  Similarity=0.143  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHhhc----CCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcC
Q psy14164         81 NRGFLLDALNSMM----VNVGAELEKIIKTLKENQDQ---KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEG  152 (361)
Q Consensus        81 ~~~~L~eal~~~~----~~~~~~mk~~l~~L~~~~~~---~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s  152 (361)
                      ++.||+-.....+    .+....+++.+..+....++   ......-|+.+.-++.-.++... .   ++-.+.. ..++
T Consensus       590 ~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s---~l~~v~~~~e~~  665 (1176)
T KOG1248|consen  590 RSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-S---KLFTVDPEFENS  665 (1176)
T ss_pred             HHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-H---HHHHhhHHhhcc
Confidence            6677776663444    35566778777777654422   12334445555555444343321 1   1114444 4466


Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV  230 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~  230 (361)
                      .+..+|..+-++|..+.+. |.++..+.+.  .....|.+-+++ .+...++.++.+|+.|...++.-...|+.....+.
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev  743 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV  743 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7999999999999999987 6555544332  345555666665 45689999999999999988855556664444444


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        231 LLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       231 Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      |+.. +.-+.+.|+.|.-+|..++
T Consensus       744 IL~~-Ke~n~~aR~~Af~lL~~i~  766 (1176)
T KOG1248|consen  744 ILSL-KEVNVKARRNAFALLVFIG  766 (1176)
T ss_pred             HHhc-ccccHHHHhhHHHHHHHHH
Confidence            4444 6668899999988888887

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.48  E-value=3.7  Score=44.74  Aligned_cols=243  Identities=14%  Similarity=0.133  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh----cCCC----HHHHHHHHHHHH
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL----EGSD----PELRWRAAETVA  166 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL----~s~~----~~vr~~Aa~~Lg  166 (361)
                      .-.+.|-..+..+.+....-+.....+.-|.+++.--.|...+.++|+++.|+..|    .++.    +.+-+.-+.++.
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE  196 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE  196 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence            44656666666666544444445555666666666667899999999999998855    4544    678888888888


Q ss_pred             HHhhcCHH----HHHHHHhcC--------hHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        167 DIVQNNPF----SQNFIIQTD--------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       167 ~iaqnn~~----~q~~v~~~g--------~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      .+.+.-..    .........        -+..|++.+.+.   .+..+....+..|..++.|++...+.++++  +...
T Consensus       197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~  274 (802)
T PF13764_consen  197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPY  274 (802)
T ss_pred             HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHh
Confidence            77653111    111111122        377777777753   356888899999999999999988777642  1222


Q ss_pred             HHh--hc---cCCHHHHHHHHHHHHHHhcC------CchHHHHHHhCCcHHHHHHhccCC--C---CCChh--------H
Q psy14164        232 LRC--IQ---SKKEKLVIKSCFLIACLCTD------NNQVKQVLLSMGMVEQMCVLIDIE--D---ALDTE--------M  287 (361)
Q Consensus       232 v~l--L~---s~~~~v~~kA~~ll~~L~~~------~~~~~~~l~~~g~i~~Lv~lL~~~--~---~~d~~--------~  287 (361)
                      +++  +.   +++.++.   +-+++.++.+      +...++.+++.|++...++.|...  .   -.+++        .
T Consensus       275 l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  275 LDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             cChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            221  11   1233333   3333344433      246899999999999888887654  0   01111        2


Q ss_pred             HHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164        288 NEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFE  349 (361)
Q Consensus       288 ~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~  349 (361)
                      .-.+|..|.-|+.+++.....-.      .+.| ..+..|.+-..-..+...|.++|+.+-.
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~------~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIA------EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHH------hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            34567777777777653222111      1122 2222222211123567788888877654

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=94.47  E-value=0.71  Score=38.83  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHHhhcc--CCCHHHHHHHHHHHHHHhcC
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~LL~~--~~~~~v~~~Al~ALS~l~r~  214 (361)
                      ++..|-+-|+++++.++..|+.+|-.++.|... ++..+.....+..|++++..  ..+..|+.+++..|-+-...
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            466777788999999999999999999999755 77778887888889999976  35779999999888876653

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2999|consensus

Probab=94.42  E-value=0.87  Score=46.83  Aligned_cols=158  Identities=13%  Similarity=0.218  Sum_probs=120.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC---CHHHHHHHHHHHHHHhcCChhhH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~---~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      ...++..+.+++..-+..|..-+..+.. .+.....|+...++..|.+++.++.   ...+....+.|.|.+.-+.-..+
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4556788888888888889999999886 5667778899999999999998753   24677888888888876644333


Q ss_pred             HHHHhhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        220 KEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL--~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                      ..+- ..++.......  +.-+..+-..|...+-+++.+++..+..+.+.--+..|+..|...   +..++.+|+..+-+
T Consensus       164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aial~na  239 (713)
T KOG2999|consen  164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIALLNA  239 (713)
T ss_pred             eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence            3332 22333333332  233667778888888899888888888888888899999999998   99999999999999


Q ss_pred             HHhcChHH
Q psy14164        298 LIKDSPEA  305 (361)
Q Consensus       298 L~~~~~~~  305 (361)
                      +...+|..
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            99888754

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.36  E-value=4.6  Score=37.97  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHhcCCC---CH---HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC-----CHHHHHHHHHHH
Q psy14164         97 GAELEKIIKTLKENQD---QK---DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS-----DPELRWRAAETV  165 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~---~~---~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~-----~~~vr~~Aa~~L  165 (361)
                      +-++++++.+...-+.   +.   ...-.||.-|..+..+.+....|.+....-.|..+|+..     -.-+|-.++.+|
T Consensus        41 ~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVI  120 (262)
T PF04078_consen   41 AALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVI  120 (262)
T ss_dssp             HHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHH
Confidence            4567777766543332   22   445677777888888889999999998777778888653     357999999999


Q ss_pred             HHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH-------HHHHh-hCcHHHHHH-hh
Q psy14164        166 ADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL-------KEFIK-RDGFSVLLR-CI  235 (361)
Q Consensus       166 g~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~-------~~f~~-~ggi~~Lv~-lL  235 (361)
                      |.+++. ++++-..+++.+.+|..++.++.+ ++--|.-|.+-+..|.-+ +.+.       +.|.. ...+..++. +.
T Consensus       121 gaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~  198 (262)
T PF04078_consen  121 GALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLV  198 (262)
T ss_dssp             HHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            999984 667888889999999999999974 667888899999888753 2222       22322 123444443 33


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164        236 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL  265 (361)
Q Consensus       236 ~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~  265 (361)
                      ..++.++-+.+..+-..|+. ++..+..+.
T Consensus       199 ~~pS~RLLKhIIrCYlRLsd-nprar~aL~  227 (262)
T PF04078_consen  199 KQPSPRLLKHIIRCYLRLSD-NPRAREALR  227 (262)
T ss_dssp             HS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred             cCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence            45678888888887777755 455665554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1967|consensus

Probab=94.24  E-value=0.64  Score=50.32  Aligned_cols=163  Identities=13%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hCcHHHHHHhhccCCHHHHHHHHHHHHH
Q psy14164        175 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIAC  252 (361)
Q Consensus       175 ~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~--~ggi~~Lv~lL~s~~~~v~~kA~~ll~~  252 (361)
                      .+|.+. ...+|.|++.+.. .+..+|-.-+-+||.++.+-|..  .+..  ...+|.|+++|+-+|..+|..+..+|.-
T Consensus       860 ykQRfF-~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~  935 (1030)
T KOG1967|consen  860 YKQRFF-CDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPM  935 (1030)
T ss_pred             HHHHHH-HhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhH
Confidence            334433 3589999999985 45588999999999999866652  2221  3578899999999999999999999998


Q ss_pred             HhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164        253 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV  332 (361)
Q Consensus       253 L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e  332 (361)
                      ++...+.....-+ .-+++.++.+=++.++...-+|+.|+.+|..|...-|...-   .+.-  .+.|+-.+.-+..+  
T Consensus       936 ~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l---~~fr--~~Vl~al~k~LdDk-- 1007 (1030)
T KOG1967|consen  936 LLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL---LSFR--PLVLRALIKILDDK-- 1007 (1030)
T ss_pred             HHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc---cccc--HHHHHHhhhccCcH--
Confidence            8877554443322 24577777664443111156899999999999986654321   1111  23455445455432  


Q ss_pred             hHHHHHHHHHHHHHhcC
Q psy14164        333 YHKELEYVNSVLTEVFE  349 (361)
Q Consensus       333 ~~~e~~~~~~il~~~f~  349 (361)
                      -.-+++.|.+.-+.||.
T Consensus      1008 KRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 1008 KRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            12345566666666664

>KOG2611|consensus

Probab=94.21  E-value=3.1  Score=42.31  Aligned_cols=196  Identities=14%  Similarity=0.148  Sum_probs=123.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCH---HHHHHHHhcChHHHHHHhhccC------CCHHHHHHHHHHHHHHhcCCh
Q psy14164        146 LQPLLEGSDPELRWRAAETVADIVQNNP---FSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~---~~q~~v~~~g~l~~Ll~LL~~~------~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      +..|+...+.+=|-.|+..+...+.|.+   ..+..+.++=+++-+=+||.+.      ++...+.-++..|.|.|+..+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5567777788889999999999998844   4466688887888888888642      344667778889999998644


Q ss_pred             hhH-HHHHhhCcHHHHHHhhccC-CHH------HHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164        217 ECL-KEFIKRDGFSVLLRCIQSK-KEK------LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN  288 (361)
Q Consensus       217 ~~~-~~f~~~ggi~~Lv~lL~s~-~~~------v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~  288 (361)
                      -+. ..+  .+.||.|.+.+... ++.      +...+-.+++.+++. +.-...++..|.++.+++.-.-+   +-..-
T Consensus        96 lAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~---~~~~d  169 (698)
T KOG2611|consen   96 LASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP---DGSHD  169 (698)
T ss_pred             hccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC---CCchh
Confidence            332 223  36789999988743 222      556666677776665 56677888899999999876554   22221


Q ss_pred             HHHHHHHHHHHh-cChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164        289 EHLLSALASLIK-DSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDS  352 (361)
Q Consensus       289 e~al~aL~~L~~-~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~  352 (361)
                       .++..+.-++. ..-+.+   ....-.|...+....+..+.. ++..-||.|.-+-..+|.+.+
T Consensus       170 -~alal~Vlll~~~~~~cw---~e~~~~flali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~  229 (698)
T KOG2611|consen  170 -MALALKVLLLLVSKLDCW---SETIERFLALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYS  229 (698)
T ss_pred             -HHHHHHHHHHHHHhcccC---cCCHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChH
Confidence             22222222222 111111   122224555666555555422 455557777766666776654

>KOG2025|consensus

Probab=94.13  E-value=4.6  Score=42.98  Aligned_cols=123  Identities=17%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHH
Q psy14164         82 RGFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL  157 (361)
Q Consensus        82 ~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~--~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~v  157 (361)
                      .+|+.....++.  .-+.+.+.-.+..+....++  ..++-..|..|.-++..+....+-+-.+....+..=|....+.|
T Consensus        63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V  142 (892)
T KOG2025|consen   63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV  142 (892)
T ss_pred             HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence            356666555554  22233455555554443333  46677788888877764332222222233455555556678899


Q ss_pred             HHHHHHHHHHHh--hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy14164        158 RWRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL  211 (361)
Q Consensus       158 r~~Aa~~Lg~ia--qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l  211 (361)
                      |..|..+|+..-  .++++       ..+...+..+++.+++++||+.|+..|+.=
T Consensus       143 RiqAv~aLsrlQ~d~~dee-------~~v~n~l~~liqnDpS~EVRRaaLsnI~vd  191 (892)
T KOG2025|consen  143 RIQAVLALSRLQGDPKDEE-------CPVVNLLKDLIQNDPSDEVRRAALSNISVD  191 (892)
T ss_pred             HHHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence            999999999874  23333       347788999999999999999988777753

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.11  E-value=2.6  Score=44.07  Aligned_cols=132  Identities=17%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHHhh----cCHHHHHHHHhcChHHHHHHhhcc---CCCHHHHHHHHHHHHHH
Q psy14164        143 LPVLQPLLEG----SDPELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCL  211 (361)
Q Consensus       143 ~~~Lv~LL~s----~~~~vr~~Aa~~Lg~iaq----nn~~~q~~v~~~g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l  211 (361)
                      +..+..++.+    +++.++..|.-.+|+++.    +++.+...+ -...++.|...|..   ..+...+.-++-||+|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            4455556655    356788888888888764    233222222 23477777777653   23445667788999987


Q ss_pred             hcCChhhHHHHHhhCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164        212 VRENEECLKEFIKRDGFSVLLRCIQ---SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN  288 (361)
Q Consensus       212 ~r~~~~~~~~f~~~ggi~~Lv~lL~---s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~  288 (361)
                        |++.....         |...+.   ..+..+|..|+|++..++...|...        -+.+..++.+. ..++++|
T Consensus       474 --g~~~~i~~---------l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~-~e~~EvR  533 (574)
T smart00638      474 --GHPSSIKV---------LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNR-AEPPEVR  533 (574)
T ss_pred             --CChhHHHH---------HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCC-CCChHHH
Confidence              34444332         233333   3378999999999998876555422        23344555443 2367888


Q ss_pred             HHHHHHH
Q psy14164        289 EHLLSAL  295 (361)
Q Consensus       289 e~al~aL  295 (361)
                      ..|..+|
T Consensus       534 iaA~~~l  540 (574)
T smart00638      534 MAAVLVL  540 (574)
T ss_pred             HHHHHHH
Confidence            8776655

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.11  E-value=0.63  Score=41.88  Aligned_cols=130  Identities=13%  Similarity=0.101  Sum_probs=88.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH---------------hcChHHHHHHhhccC-----CCHHHHHHHHHHHH
Q psy14164        150 LEGSDPELRWRAAETVADIVQNNPFSQNFII---------------QTDFLNLLLTSIEHD-----SNTTVQVKSLYAVS  209 (361)
Q Consensus       150 L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~---------------~~g~l~~Ll~LL~~~-----~~~~v~~~Al~ALS  209 (361)
                      +..+....-..++.+|+|++.....+...+-               +...+..|+.++..+     ....---..++.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            3345555667788999999886655543221               223678888888652     11234457889999


Q ss_pred             HHhcCChhhHHHHHhhC--c--HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh---CCcHHHHHHhccCCC
Q psy14164        210 CLVRENEECLKEFIKRD--G--FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS---MGMVEQMCVLIDIED  281 (361)
Q Consensus       210 ~l~r~~~~~~~~f~~~g--g--i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~---~g~i~~Lv~lL~~~~  281 (361)
                      |+++ .+.+++-|++..  .  +..|+..+.+.+.--|.-++.+|.|+|...... ..+..   .++++.|+--|..++
T Consensus        84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGpE  160 (192)
T PF04063_consen   84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGPE  160 (192)
T ss_pred             HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCCC
Confidence            9998 677888887643  3  667777777887777777889999999875544 44443   467777777777653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.02  E-value=0.77  Score=39.34  Aligned_cols=73  Identities=22%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      ++..|.+=|.|.++.++..|+.+|..+++|.. .++..|...+.+..|++++....+..|+.+.+..|-.-...
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            46667777889999999999999999999966 47778888899999999998756789999999888876654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.99  E-value=0.58  Score=48.74  Aligned_cols=154  Identities=14%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~---q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      |.+|.|...|++.+..|.......+|+|+.+.|+.   ++++.   .---|+.+|.+ .+.++|+.|...+++|.+---+
T Consensus       688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGP  763 (975)
T COG5181         688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS-WNKEIRRNATETFGCISRAIGP  763 (975)
T ss_pred             hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCH
Confidence            56899999999999999999999999999998872   22221   12236667775 5789999999999999874322


Q ss_pred             h---------------HHHHH---------h-hCcHHHHHHhh---ccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCC
Q psy14164        218 C---------------LKEFI---------K-RDGFSVLLRCI---QSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMG  268 (361)
Q Consensus       218 ~---------------~~~f~---------~-~ggi~~Lv~lL---~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g  268 (361)
                      +               ++.+.         + +|-+..|=-+|   ..+...||.-..-+++.+..- +...++++.  -
T Consensus       764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~  841 (975)
T COG5181         764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--S  841 (975)
T ss_pred             HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--H
Confidence            1               11111         1 12122222222   234555665555444444321 222233332  1


Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      +.+.|-+.|...   |.-.|..+...+.+|+-+|+
T Consensus       842 itPlleDAltDr---D~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         842 ITPLLEDALTDR---DPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             hhHHHHhhhccc---chHHHHHHHHHHHHHhcCCC
Confidence            233344444444   67777777777777776665

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.98  E-value=2.1  Score=41.49  Aligned_cols=79  Identities=27%  Similarity=0.352  Sum_probs=63.3

Q ss_pred             HHHHHhhC--cHHHHHHhhccCCHH-HHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        219 LKEFIKRD--GFSVLLRCIQSKKEK-LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       219 ~~~f~~~g--gi~~Lv~lL~s~~~~-v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      .+.|.+.+  .+..|.+.|++.... .-.-||.=|..++...|+.+..+.+.|+=..+++|++++   |++++=.|+.|+
T Consensus       347 ~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~---d~~VkfeAl~a~  423 (432)
T COG5231         347 LDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHD---DDDVKFEALQAL  423 (432)
T ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCC---CchhhHHHHHHH
Confidence            34444333  456788888876433 445577888888888999999999999999999999999   999999999999


Q ss_pred             HHHHh
Q psy14164        296 ASLIK  300 (361)
Q Consensus       296 ~~L~~  300 (361)
                      ..+..
T Consensus       424 q~~i~  428 (432)
T COG5231         424 QTCIS  428 (432)
T ss_pred             HHHHh
Confidence            88764

>KOG1240|consensus

Probab=93.95  E-value=3  Score=46.73  Aligned_cols=209  Identities=15%  Similarity=0.194  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCc-----ccHHHHHHCCCHHHHHHhhcC-CCHHHHHHHHHHH
Q psy14164         94 VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSI-----DYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETV  165 (361)
Q Consensus        94 ~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~i-----dna~~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~L  165 (361)
                      .++-..+...+..+.--.  ...+++..|+..|.+++-.+     .+++-|.+- .+|.|-.++.. ...-||..-|.+|
T Consensus       454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnl  532 (1431)
T KOG1240|consen  454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNL  532 (1431)
T ss_pred             cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhH
Confidence            455555666665543221  22477888888887776433     356667664 57788888876 6778899989998


Q ss_pred             HHHhhcCHHHHHH----------------------------HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC--
Q psy14164        166 ADIVQNNPFSQNF----------------------------IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN--  215 (361)
Q Consensus       166 g~iaqnn~~~q~~----------------------------v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~--  215 (361)
                      +.+|..--..++.                            .+-.++=.....||. ++++.||+..+-.|.-||.-+  
T Consensus       533 a~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk  611 (1431)
T KOG1240|consen  533 AQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK  611 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh
Confidence            8876321111100                            001112233344555 456788888888888877311  


Q ss_pred             ----h---------------hhHHHHHh---------------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH
Q psy14164        216 ----E---------------ECLKEFIK---------------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  261 (361)
Q Consensus       216 ----~---------------~~~~~f~~---------------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~  261 (361)
                          .               .-+-+|++               .+.+|.|.+.|.+..+-|..+|..+++.|+..+--.+
T Consensus       612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K  691 (1431)
T KOG1240|consen  612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK  691 (1431)
T ss_pred             cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence                1               11333432               3456788888999999999999999999997653333


Q ss_pred             HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhh
Q psy14164        262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC  309 (361)
Q Consensus       262 ~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~  309 (361)
                      ..++  .+++-..-+|-.+   +.=+|..++..|..+...-..+-..|
T Consensus       692 ~~v~--~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~ls~advyc  734 (1431)
T KOG1240|consen  692 PAVK--DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQLSAADVYC  734 (1431)
T ss_pred             HHHH--HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhhhhhhheE
Confidence            3333  4566667778888   88999999999888886544333334

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.82  E-value=1.7  Score=43.31  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc-cC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HD--SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~-~~--~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      +.|-..|+.++.++..|.|.+-..+.+.|+.+.+++-+. .+  ++..+....-.+|+.||= |....+.|.+.+.++.+
T Consensus       123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~  201 (379)
T PF06025_consen  123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKL  201 (379)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHH
Confidence            678889999999999999999999999999999999888 33  455777777788888888 67789999999999999


Q ss_pred             HHhhccCCH-H------HHHHHHHHHHHHhcCCchHHHHHHhC--CcHHHHHHh
Q psy14164        232 LRCIQSKKE-K------LVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVL  276 (361)
Q Consensus       232 v~lL~s~~~-~------v~~kA~~ll~~L~~~~~~~~~~l~~~--g~i~~Lv~l  276 (361)
                      ++++.+++. +      +-...-..+-.|+++.|..|..+++.  .++..++.+
T Consensus       202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~  255 (379)
T PF06025_consen  202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVEL  255 (379)
T ss_pred             HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999987632 2      22222334445666777777666543  234444444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2137|consensus

Probab=93.71  E-value=1.5  Score=46.43  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             HHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164        137 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       137 ~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      .++...+|.|...++..+..++..++.++.+++.-=+   -.+++.-++|.|-.+.....+..++..++-|+..++    
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----  457 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----  457 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----
Confidence            3444578888889999999999999999999987544   235667789999998776678899999999999998    


Q ss_pred             hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164        217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..++.+.-..-+..+..+.+..++.+......+...+....+.- ..+.-..+++.++-+...+
T Consensus       458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence            23444444456778888888889999998888888877654433 3444567788777776655

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.61  E-value=0.36  Score=36.44  Aligned_cols=67  Identities=10%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164        201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  269 (361)
Q Consensus       201 ~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~  269 (361)
                      .+.|+||++++.. .+....-+.+.+.++.++++.... ...+|--| |..-.|.....+-.+.+.+.|.
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~-fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTC-FYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHH-HHHHHHHhCCHHHHHHHHHcCC
Confidence            5789999999987 566666666678999999998765 45555544 4444566667777777777764

>KOG4151|consensus

Probab=93.54  E-value=0.58  Score=49.83  Aligned_cols=203  Identities=14%  Similarity=0.121  Sum_probs=128.2

Q ss_pred             HHHCCCHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164        137 FLKMGGLPVLQPLLEGSDPELRWRAAETVA-DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       137 ~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg-~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      .++.||+..|+++.......-+..+..+|. .+.=  |  -+.  ...+++++.+.+..+..-.-.-.++-++-|++..+
T Consensus       500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~--~~~--~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s  573 (748)
T KOG4151|consen  500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--P--GER--SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS  573 (748)
T ss_pred             cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--C--CCc--hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence            678899999999877666666666666666 2211  1  111  13578888888887654455677899999998888


Q ss_pred             hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                      ....+.++..-+++.+-..+...+.-+|+-++.++.||..+..-..+.+.+. .-++....++..-   +..+...+..+
T Consensus       574 ~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~---~E~~~lA~a~a  650 (748)
T KOG4151|consen  574 ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA---DEKFELAGAGA  650 (748)
T ss_pred             hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---hhHHhhhcccc
Confidence            8888888888888888888888899999999999999998654444455552 3345455555544   56666666666


Q ss_pred             HHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcC------hh---hhHHHHHHHHHHHHHhcCCCC
Q psy14164        295 LASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAG------NE---VYHKELEYVNSVLTEVFEEDS  352 (361)
Q Consensus       295 L~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~------~~---e~~~e~~~~~~il~~~f~~~~  352 (361)
                      +..|+....    .||..-+.+.++.+-....++.      |.   .....++...+|.+++|..+.
T Consensus       651 ~a~I~sv~~----n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~  713 (748)
T KOG4151|consen  651 LAAITSVVE----NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEV  713 (748)
T ss_pred             ccchhhcch----hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence            665554432    2222123333444433333321      11   111245566666666666543

>KOG1020|consensus

Probab=93.41  E-value=3.4  Score=47.28  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14164         97 GAELEKIIKTLKENQ---------DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVAD  167 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~---------~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~  167 (361)
                      -..+|-.+..+...+         .+--+.-.|.....++...-...+.|-.  -+..++..|..+...+|..|.+||+.
T Consensus       765 ~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKclS~  842 (1692)
T KOG1020|consen  765 ENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCLSM  842 (1692)
T ss_pred             HHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            345666666665442         0011223344444444443333444332  36667788899999999999999999


Q ss_pred             HhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHH
Q psy14164        168 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC  247 (361)
Q Consensus       168 iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~  247 (361)
                      ++.-.|.+-.   ...+-..+..-+. ++...||..|+--+|.-+..++....+++     ..+.+-..++...||++|.
T Consensus       843 ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvI  913 (1692)
T KOG1020|consen  843 IVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVI  913 (1692)
T ss_pred             HHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHH
Confidence            9987665321   1112222222333 35679999999999998888887777765     3566667778899999999


Q ss_pred             HHHHHHhcCCchH
Q psy14164        248 FLIACLCTDNNQV  260 (361)
Q Consensus       248 ~ll~~L~~~~~~~  260 (361)
                      -.+..+|.+.|.+
T Consensus       914 KIlrdic~e~pdf  926 (1692)
T KOG1020|consen  914 KILRDICEETPDF  926 (1692)
T ss_pred             HHHHHHHHhCCCh
Confidence            9999999987754

>KOG3036|consensus

Probab=93.29  E-value=4.4  Score=37.86  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHhhcC-cccHHHH-HHCCCHHHHHHh-hc----------CCCHHHHHHHHHHHHHHhhcCHHHHHHHHh
Q psy14164        115 DICIGALDNLSDYICS-IDYANDF-LKMGGLPVLQPL-LE----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ  181 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~-idna~~~-~~~Gg~~~Lv~L-L~----------s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~  181 (361)
                      +-++.||.+|..--+. .|.|--+ +..|....|++- +.          ++...-|..-+-+|=.++..+|+.+..|++
T Consensus        39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~  118 (293)
T KOG3036|consen   39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR  118 (293)
T ss_pred             chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence            3455666666555443 2344322 233433333331 11          234455666666666777789999999999


Q ss_pred             cChHHHHHHhhc----cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        182 TDFLNLLLTSIE----HDSNTTVQVKSLYAVSCLVRENEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       182 ~g~l~~Ll~LL~----~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~-~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      +..=-.|-..|.    +.+.+..|-.++..|+.++...+.-...|+ ..+.+|..++.+..+++-.|.-|+|.+--+...
T Consensus       119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld  198 (293)
T KOG3036|consen  119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD  198 (293)
T ss_pred             ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence            864333334443    335678999999999999997666555554 578899999999999999999999999988775


Q ss_pred             CchH------HHHHHh-CCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        257 NNQV------KQVLLS-MGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       257 ~~~~------~~~l~~-~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +.-.      .+.|.. .-++..++.-| +.+   +..+..+++++...|..+.
T Consensus       199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCH
Confidence            4311      122211 12344444333 445   8889999999988887544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.28  E-value=0.96  Score=39.23  Aligned_cols=102  Identities=18%  Similarity=0.219  Sum_probs=78.9

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       148 ~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                      .++...+.+-...+..+++.+-+.-|..-..++ ..|.++.++.+.. ...+..++..++-+|+.-|-+  .....|+..
T Consensus        50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~  127 (157)
T PF11701_consen   50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISK  127 (157)
T ss_dssp             HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHH
T ss_pred             HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence            355555555777899999999999998776665 6688999999998 336779999999999988853  445678889


Q ss_pred             CcHHHHHHhhc-cCCHH-HHHHHHHHHH
Q psy14164        226 DGFSVLLRCIQ-SKKEK-LVIKSCFLIA  251 (361)
Q Consensus       226 ggi~~Lv~lL~-s~~~~-v~~kA~~ll~  251 (361)
                      +|++.|.+.++ +++.. +|..|+-.+.
T Consensus       128 ~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen  128 NYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            99999999995 55666 8888877664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.22  E-value=9.8  Score=37.91  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=110.4

Q ss_pred             HHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCC----------------------------------HHHHHHHHHH
Q psy14164        120 ALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSD----------------------------------PELRWRAAET  164 (361)
Q Consensus       120 Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~----------------------------------~~vr~~Aa~~  164 (361)
                      |+..|.-++....+ ...|..+||+..++..|..+-                                  ..+...-++.
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            44445555544423 456788888888877664210                                  1233344566


Q ss_pred             HHHHhh---cCHHHHHHHHh-cChHHHHHHhhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-c
Q psy14164        165 VADIVQ---NNPFSQNFIIQ-TDFLNLLLTSIEHDS--NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-S  237 (361)
Q Consensus       165 Lg~iaq---nn~~~q~~v~~-~g~l~~Ll~LL~~~~--~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s  237 (361)
                      |..+.+   ++...-..+++ ...+..|-..+.+..  ...+-..|+..++.++.+.|..+..+.++|.++.+++.+. .
T Consensus        84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~  163 (379)
T PF06025_consen   84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK  163 (379)
T ss_pred             HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence            666766   33333334555 334444555666532  2478889999999999988888888888999999998887 4


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164        238 ---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       238 ---~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                         ++.++-.-.-.++..||-+ ....+.+.+.+.++.+.+++.++
T Consensus       164 ~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  164 GILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             CCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence               3677878788888888874 56788889999999999998876

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1824|consensus

Probab=93.16  E-value=2.2  Score=46.65  Aligned_cols=154  Identities=10%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .+..|+++|...+.+|+-.|.+|||-++..-++-|-   +. .+..|..-+-++ .+..|--+.-+|=.++.+-+|....
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e~-~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~  122 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---ET-IVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSS  122 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---HH-HHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCcccc
Confidence            477889999999999999999999999954443332   21 233333322222 2233333333333444445555566


Q ss_pred             HHhhCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      |+....++.+..-|..      +...++-.++-.+..+.+..-...-. ...+.+..++.-|.++   ..-+|.++..+|
T Consensus       123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~---R~aVrKkai~~l  198 (1233)
T KOG1824|consen  123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSP---RLAVRKKAITAL  198 (1233)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccCh---HHHHHHHHHHHH
Confidence            6666666655555543      35569999999888887653322222 2235566677777777   788999999999


Q ss_pred             HHHHhcChH
Q psy14164        296 ASLIKDSPE  304 (361)
Q Consensus       296 ~~L~~~~~~  304 (361)
                      ..++..++.
T Consensus       199 ~~la~~~~~  207 (1233)
T KOG1824|consen  199 GHLASSCNR  207 (1233)
T ss_pred             HHHHHhcCH
Confidence            999987753

>KOG0212|consensus

Probab=92.95  E-value=2.8  Score=43.31  Aligned_cols=141  Identities=14%  Similarity=0.197  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhc--CHHHHHHHHhcC-hHHHHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP-ELRWRAAETVADIVQN--NPFSQNFIIQTD-FLNLLLT  190 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~-~vr~~Aa~~Lg~iaqn--n~~~q~~v~~~g-~l~~Ll~  190 (361)
                      +-+..|+-=+.++|.-....--..-.|.+..++.|+.+.++ .++..|..+-+.+..-  .+.-.+. ++.| .+..|.+
T Consensus       265 ~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~  343 (675)
T KOG0212|consen  265 EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTK  343 (675)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHH
Confidence            45666777777777554444444455667888888877666 5777776665443321  1111111 3333 5777888


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      .+.+ .....|..++.-|.-+-+..|.. -.+.....++.|...|++++..|..++.++++++|.+..
T Consensus       344 ~l~~-~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  344 YLSD-DREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             Hhhc-chHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            8886 46799999999999988766543 333346688999999999999999999999999998743

>KOG2274|consensus

Probab=92.84  E-value=16  Score=39.94  Aligned_cols=148  Identities=11%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHh-h-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        115 DICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPL-L-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~L-L-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +......+.|...| ..|.+.... +....|.++.+ + .+++|-|-..+-.++-.+.| +..|+.-.. .-.+|.|++.
T Consensus       545 evl~llmE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~-e~~iPslisi  621 (1005)
T KOG2274|consen  545 EVLVLLMEALSSVV-KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQ-ERLIPSLISV  621 (1005)
T ss_pred             HHHHHHHHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchH-HHHHHHHHHH
Confidence            33333344444443 445443332 23345666664 3 46788888888888888887 333443332 3479999999


Q ss_pred             hccCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164        192 IEHDS---NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL  265 (361)
Q Consensus       192 L~~~~---~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~  265 (361)
                      +....   ......-|+--|++++|+.|+-...-+-.-.+|++.++ |+++|..+-+.+.-+++++...+.++...-.
T Consensus       622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~  699 (1005)
T KOG2274|consen  622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWH  699 (1005)
T ss_pred             HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence            97532   24677889999999999977655444445678888887 6778999999999999999987665544443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.77  E-value=14  Score=38.58  Aligned_cols=191  Identities=10%  Similarity=0.145  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHH--HHH--CC-------CH-HHHHHhhcCCCHHHHHHHHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND--FLK--MG-------GL-PVLQPLLEGSDPELRWRAAET  164 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~--~~~--~G-------g~-~~Lv~LL~s~~~~vr~~Aa~~  164 (361)
                      .+-|.-..++|.+....++-+..|--.|..-+..-|....  +..  .|       -+ ...++-|.++.+..-..|+.+
T Consensus        38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql  117 (858)
T COG5215          38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL  117 (858)
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            3445555666776555566666665566554443333221  100  01       01 112456778888888888888


Q ss_pred             HHHHhhcCHHHHHHHHhc----ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC-c-HHHHHHhhcc-
Q psy14164        165 VADIVQNNPFSQNFIIQT----DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD-G-FSVLLRCIQS-  237 (361)
Q Consensus       165 Lg~iaqnn~~~q~~v~~~----g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g-g-i~~Lv~lL~s-  237 (361)
                      |+.|+.-.       +-.    |.+..++...-.+....++..++.+++++|-.-.| ...+...| . +......++. 
T Consensus       118 ~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~e  189 (858)
T COG5215         118 LAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNE  189 (858)
T ss_pred             HHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccC
Confidence            88887421       222    44555555555556679999999999999987555 22222223 2 3344455554 


Q ss_pred             CCHHHHHHHHHHHHH-HhcCCchHHHHHH---hCC-cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        238 KKEKLVIKSCFLIAC-LCTDNNQVKQVLL---SMG-MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       238 ~~~~v~~kA~~ll~~-L~~~~~~~~~~l~---~~g-~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ++..+|-.|..++.+ |..    .+..+-   +.+ +....|+.-..+   |.+++..+..+|..|..-.
T Consensus       190 t~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq~~---d~e~q~aafgCl~kim~Ly  252 (858)
T COG5215         190 TTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQGN---DEELQHAAFGCLNKIMMLY  252 (858)
T ss_pred             chHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhccCC---cHHHHHHHHHHHHHHHHHH
Confidence            478999999888887 321    111111   111 233455555556   7888888888887777544

>KOG1061|consensus

Probab=92.67  E-value=1.2  Score=47.23  Aligned_cols=163  Identities=10%  Similarity=0.088  Sum_probs=108.3

Q ss_pred             HHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHH
Q psy14164         79 EANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPE  156 (361)
Q Consensus        79 ~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~  156 (361)
                      ..++.-++++++.+.  .|-..+.-+.+.....  .+.+.|.-.-.-    +-+....+-....+.+..+++=..++++.
T Consensus        28 ~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T--~dlelKKlvyLY----l~nYa~~~P~~a~~avnt~~kD~~d~np~  101 (734)
T KOG1061|consen   28 EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQT--RDLELKKLVYLY----LMNYAKGKPDLAILAVNTFLKDCEDPNPL  101 (734)
T ss_pred             hhHHHHHHHHHhcCccCcchHhhhHHHHhhccc--CCchHHHHHHHH----HHHhhccCchHHHhhhhhhhccCCCCCHH
Confidence            556777778888777  3333333333333222  122333222111    22222233334456677777777789999


Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164        157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ  236 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~  236 (361)
                      +|..|.+..|.+--  +.....     ...+|.+.+++ .++-+|+.|+..+..+=..+   .+.+.+.|-+..|..++.
T Consensus       102 iR~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~  170 (734)
T KOG1061|consen  102 IRALALRTMGCLRV--DKITEY-----LCDPLLKCLKD-DDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLS  170 (734)
T ss_pred             HHHHHhhceeeEee--hHHHHH-----HHHHHHHhccC-CChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhc
Confidence            99999999887643  333333     56788999986 56789999998888885433   356777888899999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcCCc
Q psy14164        237 SKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       237 s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +.++.|...|+.+++.+...++
T Consensus       171 D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  171 DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             CCCchHHHHHHHHHHHHHHhCC
Confidence            8899999999999999987665

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.50  E-value=11  Score=36.82  Aligned_cols=148  Identities=12%  Similarity=0.186  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC---hHHHHHHhhcc
Q psy14164        118 IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEH  194 (361)
Q Consensus       118 ~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g---~l~~Ll~LL~~  194 (361)
                      ..+-..|.+++..-..+.-+.....+..+..+.+.++=+|-.-|..++-.+-+.++..-..++..+   .+...-+||.+
T Consensus       141 l~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s  220 (335)
T PF08569_consen  141 LNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES  220 (335)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-
T ss_pred             chHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            344444555554444455555556667777888889999999999999999999998877777664   56778888887


Q ss_pred             CCCHHHHHHHHHHHHHHhcC--ChhhHHHHHh-hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC---chHHHHHHh
Q psy14164        195 DSNTTVQVKSLYAVSCLVRE--NEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLS  266 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~--~~~~~~~f~~-~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~---~~~~~~l~~  266 (361)
                       ++-.+|+.++--|+-+.-+  |-.....++. ..-+..++.+|++++..+|.+|-.++--++.+.   +.....+..
T Consensus       221 -~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~  297 (335)
T PF08569_consen  221 -SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK  297 (335)
T ss_dssp             -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred             -CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence             5789999999999998854  3344455554 346889999999999999999999998887762   344444443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=92.41  E-value=1.5  Score=45.51  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      .-||..|+.|||-..-+-.   ..|........|.+||.+.|..||-+|.|++.++=
T Consensus       501 ~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         501 NIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3688899999987654321   12222334567899999999999999999999985

>KOG1820|consensus

Probab=92.32  E-value=3.3  Score=45.18  Aligned_cols=170  Identities=15%  Similarity=0.134  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCC---CHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMG---GLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~G---g~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .++..|++.+...+++--   --...|   -+-.++.. +...+..|...|+.+|.-++......-.. +..+++|.|+.
T Consensus       268 K~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld  343 (815)
T KOG1820|consen  268 KDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLD  343 (815)
T ss_pred             HHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHH
Confidence            678888888888776533   111122   23344443 34578899999999999999876654222 22468898988


Q ss_pred             hhccCCCHHHH---HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHh
Q psy14164        191 SIEHDSNTTVQ---VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLS  266 (361)
Q Consensus       191 LL~~~~~~~v~---~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~  266 (361)
                      -+.. ....++   ++++-++++.   ++.       ..-.+.+..++.+++++++.....++...+.. ++.....-.-
T Consensus       344 ~lke-kk~~l~d~l~~~~d~~~ns---~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~  412 (815)
T KOG1820|consen  344 RLKE-KKSELRDALLKALDAILNS---TPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV  412 (815)
T ss_pred             Hhhh-ccHHHHHHHHHHHHHHHhc---ccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence            8875 333333   4555555552   111       12345678889999999999976666666554 3333333333


Q ss_pred             CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .++++.++......   +.++|..++.++..+....
T Consensus       413 ~~l~p~~~~~~~D~---~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  413 KTLVPHLIKHINDT---DKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             HHHhHHHhhhccCC---cHHHHHHHHHHHHHHHHHh
Confidence            46788888877777   9999999999999888644

>KOG1832|consensus

Probab=92.31  E-value=0.33  Score=52.30  Aligned_cols=154  Identities=19%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHhhcCc--------ccHHHHHHCCCHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        115 DICIGALDNLSDYICSI--------DYANDFLKMGGLPVLQPLLE--------GSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~i--------dna~~~~~~Gg~~~Lv~LL~--------s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +.....++.++.+++-.        .-|++|.++||+..++.+..        ++..++...|+.+|. |+..-|..|..
T Consensus       567 ~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~-i~t~iP~iq~~  645 (1516)
T KOG1832|consen  567 EAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLH-IVTSIPDIQKA  645 (1516)
T ss_pred             hHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhhee-eeEecchHHHH
Confidence            44555566666555432        45799999999999999875        344677778888876 44567888877


Q ss_pred             HHhc--------ChHHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChhh-----------------------------
Q psy14164        179 IIQT--------DFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEEC-----------------------------  218 (361)
Q Consensus       179 v~~~--------g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~~-----------------------------  218 (361)
                      +...        .++..++..-..   ..+++++..|+..|-|++..-|..                             
T Consensus       646 La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le  725 (1516)
T KOG1832|consen  646 LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLE  725 (1516)
T ss_pred             HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHH
Confidence            7643        355555554321   136789999999988876543221                             


Q ss_pred             ------HHHHHhhCcHHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        219 ------LKEFIKRDGFSVLLRCIQSK-----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       219 ------~~~f~~~ggi~~Lv~lL~s~-----~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                            +.++...+||..|+.+|+-.     ...+|.-||.++.-|++ ++.+++.+.+.-++
T Consensus       726 ~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLpLv  787 (1516)
T KOG1832|consen  726 QVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR-DDTVRQILTKLPLV  787 (1516)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCccc
Confidence                  33455678999999999853     46889999999999887 56788877765544

>KOG4151|consensus

Probab=92.24  E-value=2.9  Score=44.67  Aligned_cols=213  Identities=15%  Similarity=0.215  Sum_probs=121.7

Q ss_pred             CCCCCCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy14164         42 QPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGAL  121 (361)
Q Consensus        42 ~~~~~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al  121 (361)
                      -+-++.+.+.||+.+.+.+..     +            .+.| -.||.....=+.++--+.+..+.+....+..-..-+
T Consensus       499 ~~Ik~~~~~aLlrl~~~q~e~-----a------------kl~~-~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~  560 (748)
T KOG4151|consen  499 KKIKPGGYEALLRLGQQQFEE-----A------------KLKW-YHALAGKIDFPGERSYEVVKPLDSALHNDEKGLENF  560 (748)
T ss_pred             ccccccHHHHHHHHHHHhchH-----H------------HHHH-HHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHH
Confidence            456788999999999988631     1            2344 244442110011122333444444333332222222


Q ss_pred             HHHHHhh--cCccc--HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC
Q psy14164        122 DNLSDYI--CSIDY--ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN  197 (361)
Q Consensus       122 ~~L~~lv--e~idn--a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~  197 (361)
                      +.|+.+-  .+++.  ...+++--+++-+-.++..+++.++..|+..+.|+.-..-..-..+.+...=.++|.+.....+
T Consensus       561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~  640 (748)
T KOG4151|consen  561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD  640 (748)
T ss_pred             HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence            2222222  11111  2335555566666667888999999999999999998766666666664433334444332244


Q ss_pred             HHHHHHHHHHHH---HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164        198 TTVQVKSLYAVS---CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  274 (361)
Q Consensus       198 ~~v~~~Al~ALS---~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv  274 (361)
                      +.....++.++.   .++.++-+....  ...+...++.++.+.+..+|......+.++.....+....+........+.
T Consensus       641 E~~~lA~a~a~a~I~sv~~n~c~~~~~--~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~  718 (748)
T KOG4151|consen  641 EKFELAGAGALAAITSVVENHCSRILE--LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS  718 (748)
T ss_pred             hHHhhhccccccchhhcchhhhhhHHH--hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence            455555555444   444443332222  347889999999999999999999999986655555555555444444333

>KOG2611|consensus

Probab=92.18  E-value=9.1  Score=39.12  Aligned_cols=136  Identities=16%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCcc--cH--HHHHHCCCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCHHHH--HH
Q psy14164        112 DQKDICIGALDNLSDYICSID--YA--NDFLKMGGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQ--NF  178 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~id--na--~~~~~~Gg~~~Lv~LL~s-------~~~~vr~~Aa~~Lg~iaqnn~~~q--~~  178 (361)
                      .+++++..||--.-.+|.+-|  .+  +.+...=|++.+=+||.+       ++...+.-+..+|+..|+. |+..  ..
T Consensus        23 k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~  101 (698)
T KOG2611|consen   23 KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEE  101 (698)
T ss_pred             cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHH
Confidence            445778888877777776554  22  335666689999999975       3456788888888888864 3321  22


Q ss_pred             HHhcChHHHHHHhhccCCCHH------HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc----CCHHHHHHHHH
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTT------VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS----KKEKLVIKSCF  248 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~------v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s----~~~~v~~kA~~  248 (361)
                      ++  ..||.|+..++...++.      +...+-.+|-.++. .+++....+..||++.+-+.-..    .+..+..+...
T Consensus       102 ~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll  178 (698)
T KOG2611|consen  102 MV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL  178 (698)
T ss_pred             HH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence            33  46899999987543332      44555555555554 58899999999999999865432    24555555544


Q ss_pred             HHH
Q psy14164        249 LIA  251 (361)
Q Consensus       249 ll~  251 (361)
                      +..
T Consensus       179 l~~  181 (698)
T KOG2611|consen  179 LLV  181 (698)
T ss_pred             HHH
Confidence            433

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.15  E-value=4.7  Score=35.99  Aligned_cols=139  Identities=15%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhhcCcccHH------HHHHCC------CHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164        116 ICIGALDNLSDYICSIDYAN------DFLKMG------GLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT  182 (361)
Q Consensus       116 ~~~~Al~~L~~lve~idna~------~~~~~G------g~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~  182 (361)
                      .+..|+.-|..++...|-..      .|..-+      .-+.|+. ++..+++.+|..|+.+|+.+-.+....=...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            35667777777776644321      122222      4455655 5678999999999999999987743221111111


Q ss_pred             -------------------ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH----HHHHhhccCC
Q psy14164        183 -------------------DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS----VLLRCIQSKK  239 (361)
Q Consensus       183 -------------------g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~----~Lv~lL~s~~  239 (361)
                                         ..-..|+..|..+.+..+....+-+++.++.+.|...-   ..|-++    .+...+.+.|
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence                               13455677777777778888999999999988776432   234444    4445566789


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q psy14164        240 EKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       240 ~~v~~kA~~ll~~L~~~~  257 (361)
                      ..++.-+..++..|++..
T Consensus       159 ~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            999999999999888754

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=92.15  E-value=3.1  Score=39.31  Aligned_cols=145  Identities=16%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             HHHCCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        137 FLKMGGLPVLQPLLEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       137 ~~~~Gg~~~Lv~LL~s~~----~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      |.-.+.+|.++.-+..+.    ...-..+|..|+.+|.++.        ...+..++..+....-.....-.--.++.+.
T Consensus       107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~  178 (262)
T PF14225_consen  107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR  178 (262)
T ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            334455677777666666    2344566788888874322        3345555555543322122222223333343


Q ss_pred             cCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHH
Q psy14164        213 REN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL  291 (361)
Q Consensus       213 r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~a  291 (361)
                      .++ |..     +...+..|+++|..+..-+|.++..+|..+...-+-.+.  ...+++.++.++|.++      +...|
T Consensus       179 ~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~------~~~eA  245 (262)
T PF14225_consen  179 EAFFPDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD------LWMEA  245 (262)
T ss_pred             HHhCchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc------cHHHH
Confidence            333 221     123456789999999999999999999999976322222  4556899999999875      66678


Q ss_pred             HHHHHHHHhcC
Q psy14164        292 LSALASLIKDS  302 (361)
Q Consensus       292 l~aL~~L~~~~  302 (361)
                      +..|..++..+
T Consensus       246 L~VLd~~v~~s  256 (262)
T PF14225_consen  246 LEVLDEIVTRS  256 (262)
T ss_pred             HHHHHHHHhhc
Confidence            88887777654

>KOG1243|consensus

Probab=92.09  E-value=2.6  Score=44.60  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164        139 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       139 ~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r  213 (361)
                      .-+.+|.|+++..+.+..||..   +|.++-+.-+..+..+++.-++|.+..-+.. +++.+|..++-++..++-
T Consensus       328 q~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~  398 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAP  398 (690)
T ss_pred             ccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHh
Confidence            3457899999999999999954   5555555555566777888999999998884 788999999999988864

>KOG1943|consensus

Probab=92.03  E-value=2  Score=47.34  Aligned_cols=152  Identities=11%  Similarity=0.119  Sum_probs=99.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      +.+..|+.-|++.+..||+.||+-+|.+++.-|.    .+...++...+.++....+...=--|+-||+-+++-.----.
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            3466677778889999999999999999999883    233346777777776533334444888899888764322222


Q ss_pred             HHHhhCcHHHHHHhhcc--------CCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHH
Q psy14164        221 EFIKRDGFSVLLRCIQS--------KKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL  291 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s--------~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~a  291 (361)
                      .+.  ..+|.++..|.-        ....||-.||+++..+++. .+...+-++..=.-..|+..+-..   ....|..|
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRAA  491 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRAA  491 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHHH
Confidence            222  456777777753        3567999999999999987 333222222211111222333334   67788888


Q ss_pred             HHHHHHHHhc
Q psy14164        292 LSALASLIKD  301 (361)
Q Consensus       292 l~aL~~L~~~  301 (361)
                      ..|+...+..
T Consensus       492 sAAlqE~VGR  501 (1133)
T KOG1943|consen  492 SAALQENVGR  501 (1133)
T ss_pred             HHHHHHHhcc
Confidence            8888877754

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.99  E-value=16  Score=38.29  Aligned_cols=140  Identities=10%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             HHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        143 LPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       143 ~~~Lv~LL~s~~--~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      +..++.+=+.+.  ..|...-...+....++.|+--+.|  .|.+.++++-+.+ ++..||..++.-|.-+.-. -.-+.
T Consensus        51 vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~-v~eID  126 (885)
T COG5218          51 VNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTES-KDKKVRKRSLQILALLSDV-VREID  126 (885)
T ss_pred             HHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccC-cchhHHHHHHHHHHHHHHh-cchHH
Confidence            444444433322  2344444555555667888764444  4678888888876 7889999999988877643 22345


Q ss_pred             HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      ..+-.|.+..|..-+-.....||..|+++++++-..  +++.+       .+..|+.++..+  .+.++|..|+.-+
T Consensus       127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnD--PS~EVRr~allni  194 (885)
T COG5218         127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQND--PSDEVRRLALLNI  194 (885)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcC--cHHHHHHHHHHHe
Confidence            555556666676666677899999999999988532  22221       233455666554  1567777655433

>KOG4653|consensus

Probab=91.93  E-value=8.9  Score=41.67  Aligned_cols=192  Identities=16%  Similarity=0.115  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH
Q psy14164         97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  176 (361)
Q Consensus        97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q  176 (361)
                      .+.+.+++..+.++  ...-|-.++..|..++++-+-+..+..-+.+...+..|.+.++-|--.|.+.+..+|.      
T Consensus       726 ~e~~qeai~sl~d~--qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------  797 (982)
T KOG4653|consen  726 IEPLQEAISSLHDD--QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------  797 (982)
T ss_pred             HHHHHHHHHHhcCC--cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence            45566666555553  2356788999999999987666666667889999999999999988888888888874      


Q ss_pred             HHHHhcChHHHHHH-hhccCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        177 NFIIQTDFLNLLLT-SIEHDSN--TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       177 ~~v~~~g~l~~Ll~-LL~~~~~--~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                        +....++|.|.. ..+....  +.-+-+.=-||.++++--.+-...+.+ -.+...+...++++...|..++..+..|
T Consensus       798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L  874 (982)
T KOG4653|consen  798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL  874 (982)
T ss_pred             --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence              456678998888 4432111  123334446666665532222222221 2344455566677888999999999998


Q ss_pred             hcCCch-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        254 CTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       254 ~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      |.-..- ..+.+.  .++..++.+...+  +...+|..|...|..++.+--
T Consensus       875 cq~~a~~vsd~~~--ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg  921 (982)
T KOG4653|consen  875 CQLLAFQVSDFFH--EVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTG  921 (982)
T ss_pred             HHHHhhhhhHHHH--HHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccc
Confidence            864221 112222  3556666776665  467889999999998887553

>KOG1967|consensus

Probab=91.77  E-value=0.9  Score=49.22  Aligned_cols=146  Identities=14%  Similarity=0.191  Sum_probs=105.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh--cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~--~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      .+|.|++........+|..-..+|+++..|-|..  .+..  ...+|.|++-|+- +|..+|..++..|.-+..-.+.-+
T Consensus       868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence            4788888887778889999999999999998872  2332  2578888998885 677899999999998877665544


Q ss_pred             HHHHhhCcHHHHHHhhccCC---HHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        220 KEFIKRDGFSVLLRCIQSKK---EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL~s~~---~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                      ..-+ .-.+|.+..+=.+.+   .-||.-|..++..|+.--|...-......++..|...|..+   .--+|+.|.++
T Consensus       945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDT 1018 (1030)
T ss_pred             hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHH
Confidence            4333 234566665544444   78999999999999885554433334456788888888766   55566666554

>KOG1058|consensus

Probab=91.66  E-value=3.7  Score=43.87  Aligned_cols=152  Identities=14%  Similarity=0.216  Sum_probs=81.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHH-------------HHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL-------------YAVS  209 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al-------------~ALS  209 (361)
                      +|.+..+|+|.++=||..|.-+|.+|-++...    ++ -++=..+-..|..+.++..+++|.             |..+
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~  210 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLS  210 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHh
Confidence            55666799999999999999999999887211    11 011112222333334444444433             4444


Q ss_pred             HHhcCC---hhhHH---HHHh----------hCcHHHHHHhhccCCHHHHHHH-----------------HHHHHHHhcC
Q psy14164        210 CLVREN---EECLK---EFIK----------RDGFSVLLRCIQSKKEKLVIKS-----------------CFLIACLCTD  256 (361)
Q Consensus       210 ~l~r~~---~~~~~---~f~~----------~ggi~~Lv~lL~s~~~~v~~kA-----------------~~ll~~L~~~  256 (361)
                      |+-.-.   +.-+.   +|+.          .--+..+..+|.+.+..|+-+|                 +..+..|+..
T Consensus       211 ~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~k  290 (948)
T KOG1058|consen  211 NIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVK  290 (948)
T ss_pred             hHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHh
Confidence            443211   11111   1111          1124556667776554444444                 4433333332


Q ss_pred             CchHH------HHHH---------hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        257 NNQVK------QVLL---------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       257 ~~~~~------~~l~---------~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .++..      ..+.         =.|++--++.+|+++   |-+++.+++....-|+...
T Consensus       291 esdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~---dldvr~Ktldi~ldLvssr  348 (948)
T KOG1058|consen  291 ESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSP---DLDVRSKTLDIALDLVSSR  348 (948)
T ss_pred             ccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcc---cccHHHHHHHHHHhhhhhc
Confidence            22111      1111         135566677888888   9999999999888887644

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=91.64  E-value=3.2  Score=45.19  Aligned_cols=132  Identities=18%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             HHHHHHCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc---cCCC----HHHH
Q psy14164        134 ANDFLKMGGLPVLQPLLEG-----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSN----TTVQ  201 (361)
Q Consensus       134 a~~~~~~Gg~~~Lv~LL~s-----~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~---~~~~----~~v~  201 (361)
                      ++.+.+.||+..++.+|.+     ....+-...+.++..++.- +.+++.+++.|+++.|+..|.   ....    ..+-
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            4556778999999999876     3346777788999988865 889999999999999999774   2212    3555


Q ss_pred             HHHHHHHHHHhcCC----hhhHHHHHhhCc--------HHHHHHhhccC----CHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164        202 VKSLYAVSCLVREN----EECLKEFIKRDG--------FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLL  265 (361)
Q Consensus       202 ~~Al~ALS~l~r~~----~~~~~~f~~~gg--------i~~Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~~~~l~  265 (361)
                      .+.+..+-.++..-    ......+....|        +..|++.+.++    +.++..-.+.+|-+|+.++++..+.++
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv  268 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV  268 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence            56665555554321    111122223333        66777777754    689999999999999998876665555


Q ss_pred             h
Q psy14164        266 S  266 (361)
Q Consensus       266 ~  266 (361)
                      +
T Consensus       269 ~  269 (802)
T PF13764_consen  269 E  269 (802)
T ss_pred             H
Confidence            3

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.39  E-value=4.7  Score=39.10  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=87.5

Q ss_pred             HHHHCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCHHHHH------------------------------HHHh-
Q psy14164        136 DFLKMGGLPVLQPLLE---GSDPELRWRAAETVADIVQNNPFSQN------------------------------FIIQ-  181 (361)
Q Consensus       136 ~~~~~Gg~~~Lv~LL~---s~~~~vr~~Aa~~Lg~iaqnn~~~q~------------------------------~v~~-  181 (361)
                      .+.-.|-+.+-++.|.   -++.+++..--++=..+.++.....-                              .+.+ 
T Consensus       274 ~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd  353 (432)
T COG5231         274 SPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD  353 (432)
T ss_pred             hhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh
Confidence            3444565666677654   37788888877777777776433211                              1111 


Q ss_pred             -cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        182 -TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       182 -~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                       ...+..|.++++...+.....-|+.-|..++|..|.....+...||-+.+++++++++++|+-+|..++..+.+
T Consensus       354 ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         354 NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence             13667788888754333355568999999999999998888889999999999999999999999998877654

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=91.30  E-value=3.4  Score=34.69  Aligned_cols=96  Identities=8%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+..|+.+++..+....     .++..|..-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~   92 (133)
T cd03561          18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS   92 (133)
T ss_pred             HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence            5567777888876543322     2456778888899999999999999999988 455888888888988899999752


Q ss_pred             CCCChhHHHHHHHHHHHHHhcC
Q psy14164        281 DALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ...+..++.+++..|.......
T Consensus        93 ~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          93 PKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            1237899999999998777544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1077|consensus

Probab=91.21  E-value=11  Score=40.33  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        107 LKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       107 L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      |.+++..+-.|..|.-.|..+...   .-|++..|+| .+++.||...+-.|-..|...|--++.+||+.+..
T Consensus       155 LvS~~~~~~vkqkaALclL~L~r~---spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~  224 (938)
T KOG1077|consen  155 LVSGSSMDYVKQKAALCLLRLFRK---SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT  224 (938)
T ss_pred             HhCCcchHHHHHHHHHHHHHHHhc---CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh
Confidence            444433344454444444444432   3456667776 77899999999999999999999999999986654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.21  E-value=3.9  Score=36.45  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      ++.++++..+++..+|..|..+|+.+.+.   ||.        -.+|.|+.|..+ +++.+|..|...+..+...++.-.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHH
Confidence            56788888899999999999999988764   442        368999999886 788999999999999987766544


Q ss_pred             HH
Q psy14164        220 KE  221 (361)
Q Consensus       220 ~~  221 (361)
                      ..
T Consensus        81 ~~   82 (187)
T PF12830_consen   81 ES   82 (187)
T ss_pred             HH
Confidence            33

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=91.11  E-value=22  Score=37.30  Aligned_cols=147  Identities=18%  Similarity=0.251  Sum_probs=75.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH--------HHHHHH---------------hcC---hHHHHHHhhc--
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--------SQNFII---------------QTD---FLNLLLTSIE--  193 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~--------~q~~v~---------------~~g---~l~~Ll~LL~--  193 (361)
                      .+..|-.+|+++....|..|.++|..+++..|.        .-..+-               +.|   -+..|++++.  
T Consensus       304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf  383 (898)
T COG5240         304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF  383 (898)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            355566688999999999999999999887552        222111               111   1111111111  


Q ss_pred             -cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        194 -HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       194 -~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                       ++-+...+.-++.||-+++-.+|..+...+     ..|... ++.+..+.++.+.-+|+.+....|+.++..     +.
T Consensus       384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l-----~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le  453 (898)
T COG5240         384 VHDMSDGFKIIAIDALRSLSLLFPSKKLSYL-----DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LE  453 (898)
T ss_pred             HHhhccCceEEeHHHHHHHHhhCcHHHHHHH-----HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HH
Confidence             111223333344444444444444433332     122222 233455666666666666666665555443     34


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      .||.+++     |-++.+.+++.|.-|-...|
T Consensus       454 ~LC~fIE-----Dcey~~I~vrIL~iLG~EgP  480 (898)
T COG5240         454 VLCTFIE-----DCEYHQITVRILGILGREGP  480 (898)
T ss_pred             HHHHHHh-----hcchhHHHHHHHHHhcccCC
Confidence            5555554     33555556666655555554

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.03  E-value=2.2  Score=36.41  Aligned_cols=93  Identities=12%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ....-.|+-+++..+.+.     ..++..|.+=|.++++.++..|..++-.++.+ +..+...+.+.+++..|+.++...
T Consensus        22 w~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~   96 (142)
T cd03569          22 LASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT   96 (142)
T ss_pred             HHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc
Confidence            445556677776554331     23566788888899999999999999999988 677888999999999999999742


Q ss_pred             CCCChhHHHHHHHHHHHHHhc
Q psy14164        281 DALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~~  301 (361)
                        .+..++++++..+..-...
T Consensus        97 --~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          97 --KNEEVRQKILELIQAWALA  115 (142)
T ss_pred             --CCHHHHHHHHHHHHHHHHH
Confidence              2789999999999877743

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.88  E-value=5.7  Score=41.47  Aligned_cols=127  Identities=13%  Similarity=0.174  Sum_probs=75.1

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164        106 TLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF  184 (361)
Q Consensus       106 ~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~  184 (361)
                      +|.....+...|.-|.+-+..+... .+.++.     ++..++.|...++..||..|.+.|..+|.+|+..-..     +
T Consensus        28 il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----v   97 (556)
T PF05918_consen   28 ILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----V   97 (556)
T ss_dssp             HHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----H
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----H
Confidence            3333334566777777777666543 233333     5777888888899999999999999999998765544     4


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc---cCCHHHHHHHHHHHH
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ---SKKEKLVIKSCFLIA  251 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~---s~~~~v~~kA~~ll~  251 (361)
                      .-.|++||.++ +......+=.+|..+.+..+...        +..|...+.   +.+..+|.++.-+|+
T Consensus        98 aDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~t--------L~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   98 ADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKGT--------LTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHHHHHHTT----HHHHHHHHHHHHHHHHH-HHHH--------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHHH--------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            56789999974 44555566667777776555432        222222222   457788888886664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2973|consensus

Probab=90.82  E-value=16  Score=35.27  Aligned_cols=240  Identities=16%  Similarity=0.111  Sum_probs=130.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF  174 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~  174 (361)
                      ++...||..++.+.....    -..|...|-++..+-.-++.+... -+..++..+..+...+-...|.++.|+++....
T Consensus        41 ~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~  115 (353)
T KOG2973|consen   41 YSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE  115 (353)
T ss_pred             chhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH
Confidence            455566666665555322    223344444445444445555554 456667777777778888899999999998877


Q ss_pred             HHHHHHhc-----ChHHHHH-HhhccCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhhCcHH--HHHHhhccCCHHHHHH
Q psy14164        175 SQNFIIQT-----DFLNLLL-TSIEHDSNT-TVQVKSLYAVSCLVRENEECLKEFIKRDGFS--VLLRCIQSKKEKLVIK  245 (361)
Q Consensus       175 ~q~~v~~~-----g~l~~Ll-~LL~~~~~~-~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~--~Lv~lL~s~~~~v~~k  245 (361)
                      +.......     .++..|+ ...+++.+. .---..+.-++||.+ .+.++.-|....-++  .|.. +.+.+..||+.
T Consensus       116 ~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~  193 (353)
T KOG2973|consen  116 VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRG  193 (353)
T ss_pred             HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhcc
Confidence            76655432     2344444 444443221 112345566677776 566666666544222  2222 33355666654


Q ss_pred             -HHHHHHHHhcCCchHHHHHHh--CCcHHHHH---------------------HhccCC--CCCChhHHHHHHHHHHHHH
Q psy14164        246 -SCFLIACLCTDNNQVKQVLLS--MGMVEQMC---------------------VLIDIE--DALDTEMNEHLLSALASLI  299 (361)
Q Consensus       246 -A~~ll~~L~~~~~~~~~~l~~--~g~i~~Lv---------------------~lL~~~--~~~d~~~~e~al~aL~~L~  299 (361)
                       .+..|.|.|...+.. ..++.  .++++.|+                     ++|..+  -+.|+++|...+.+|..|.
T Consensus       194 GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc  272 (353)
T KOG2973|consen  194 GVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC  272 (353)
T ss_pred             chHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH
Confidence             455666766543322 22221  12233222                     444422  1457889999999998887


Q ss_pred             hcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164        300 KDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFE  349 (361)
Q Consensus       300 ~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~  349 (361)
                      ...+. -+..+..+ . +    .+++.+...++..+..+.|.++++..-.
T Consensus       273 aT~~G-Re~lR~kg-v-Y----pilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  273 ATRAG-REVLRSKG-V-Y----PILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hhhHh-HHHHHhcC-c-h----HHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            54431 11122221 1 1    2344555555677788888887776655

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.81  E-value=2.2  Score=36.32  Aligned_cols=96  Identities=11%  Similarity=0.158  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+-.|+-+++..+..-     ..++..|..-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus        19 w~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k   93 (139)
T cd03567          19 WEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK   93 (139)
T ss_pred             HHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc
Confidence            345555665665444321     23566788888999999999999999999987 678889999999999999999631


Q ss_pred             ---CCCChhHHHHHHHHHHHHHhcC
Q psy14164        281 ---DALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ---~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         ...+..++++++..|..-....
T Consensus        94 ~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          94 YLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence               1227899999999887776433

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=90.74  E-value=17  Score=35.20  Aligned_cols=150  Identities=17%  Similarity=0.248  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc---ccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHh---h
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSI---DYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIV---Q  170 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i---dna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~ia---q  170 (361)
                      ++..++..++.+..  ++..-|+..+.-++=++   +.+..+.+. ..|+|.+.+..  ..+.+|..++.+||-++   .
T Consensus        87 L~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~  163 (309)
T PF05004_consen   87 LLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGG  163 (309)
T ss_pred             HHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc
Confidence            34444444444322  55666766666665453   456666553 57778787764  34677888887888764   3


Q ss_pred             cCHHHHHHHHhcChHHHHHHh--hccC---------CCHHHHHHHHHHHHHHhcCChhh-HHHHHhhCcHHHHHHhhccC
Q psy14164        171 NNPFSQNFIIQTDFLNLLLTS--IEHD---------SNTTVQVKSLYAVSCLVRENEEC-LKEFIKRDGFSVLLRCIQSK  238 (361)
Q Consensus       171 nn~~~q~~v~~~g~l~~Ll~L--L~~~---------~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~ggi~~Lv~lL~s~  238 (361)
                      +.+......+  ..+..++..  ++.+         ++..+...|+.+-+-|+..-+.. ...+. ...++.|+.+|.++
T Consensus       164 ~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~  240 (309)
T PF05004_consen  164 SDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD  240 (309)
T ss_pred             CChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC
Confidence            3333332111  234433332  2211         23578899999988888766552 23332 45689999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy14164        239 KEKLVIKSCFLIACLC  254 (361)
Q Consensus       239 ~~~v~~kA~~ll~~L~  254 (361)
                      +..||.-|.-+|+-|.
T Consensus       241 d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  241 DVDVRIAAGEAIALLY  256 (309)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999888664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=90.56  E-value=6  Score=35.57  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHh----------------hCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhcC
Q psy14164        199 TVQVKSLYAVSCLVRENEECLKEFIK----------------RDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       199 ~v~~~Al~ALS~l~r~~~~~~~~f~~----------------~ggi~~Lv~lL~s------~~~~v~~kA~~ll~~L~~~  256 (361)
                      ...-.++..|||++|.... ...+++                ...+..|++++..      ....-....+.+++|+++ 
T Consensus        10 ~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-   87 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-   87 (192)
T ss_pred             chHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-
Confidence            4566788889999985443 333332                2245677777654      234455667888888866 


Q ss_pred             CchHHHHHHhCC--c--HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164        257 NNQVKQVLLSMG--M--VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV  332 (361)
Q Consensus       257 ~~~~~~~l~~~g--~--i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e  332 (361)
                      .++.|+.+++..  .  +..|+.++.+.   +.--|.-++.+|.|++-+....-.......   .++|-..+-.+.+.++
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~---~~iLp~LLlPLaGpEe  161 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDE---VDILPYLLLPLAGPEE  161 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchh---hhhHHHHHhhccCCCc
Confidence            678999998653  3  66777777776   777888899999999866543322221111   4567777888888877


Q ss_pred             hHHH-HHHHHHHHHHhcCCCCCcccCC
Q psy14164        333 YHKE-LEYVNSVLTEVFEEDSPEEFDH  358 (361)
Q Consensus       333 ~~~e-~~~~~~il~~~f~~~~~~~~~~  358 (361)
                      +.++ .+..---|+ |-+.+..=|.|.
T Consensus       162 ~d~ee~~~lp~~LQ-~L~~dK~RE~d~  187 (192)
T PF04063_consen  162 LDEEEMEKLPPELQ-LLPPDKKREPDP  187 (192)
T ss_pred             CCHHHHHcCCHHHh-hcCCCCccCCCc
Confidence            7664 555554554 334333333443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=90.52  E-value=2.8  Score=40.15  Aligned_cols=111  Identities=17%  Similarity=0.251  Sum_probs=79.9

Q ss_pred             ChHHHHH-HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchH
Q psy14164        183 DFLNLLL-TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV  260 (361)
Q Consensus       183 g~l~~Ll-~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~  260 (361)
                      +.+..|+ .-+.+ .+..+|..|+-+|+-.+--+......     .++.+.+.++.++..++..|+.+|.+++.. +...
T Consensus        26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455544 45555 56799999999999766544433222     356788888888999999999999998865 3322


Q ss_pred             HHHHH-------hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        261 KQVLL-------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       261 ~~~l~-------~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .....       ...++..+.+.|.+.   +++++..+..++..|+-.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence            22222       346778888889888   8899999999999988544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.48  E-value=1.4  Score=34.77  Aligned_cols=72  Identities=14%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      +...+..|+++.+.||..++..|..+.....  ....--.+++..++..|.+ ++.-|=-.|+-+|+.++..+|.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence            4556778899999999999999999998877  1111224678888888886 5778999999999999987765

>KOG2956|consensus

Probab=89.95  E-value=17  Score=37.08  Aligned_cols=146  Identities=10%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCC--CHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHH
Q psy14164         98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMG--GLPVLQPLLEG-SDPELRWRAAETVADIVQNNPF  174 (361)
Q Consensus        98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~G--g~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~  174 (361)
                      +.+...+++|.+ +.+.-.|.-||..|..++.+..  ..|...-  ++..++..=.. .+..++.++--|+..+++..|.
T Consensus       329 ~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~  405 (516)
T KOG2956|consen  329 EILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL  405 (516)
T ss_pred             HHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence            344555566655 3445678889999999887542  2222110  23334443333 4445566666667777777775


Q ss_pred             HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        175 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       175 ~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      ..-.        .+..++-. .+...-..++-.+..++..-+.-.-.-+-....|.+++.-.+.+..||+.|+|++.++.
T Consensus       406 ~~I~--------~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  406 QCIV--------NISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHH--------HHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            4322        22223322 23344444555555555432211111112467789999999999999999999999887


Q ss_pred             c
Q psy14164        255 T  255 (361)
Q Consensus       255 ~  255 (361)
                      .
T Consensus       477 ~  477 (516)
T KOG2956|consen  477 N  477 (516)
T ss_pred             H
Confidence            5

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=1.3  Score=45.90  Aligned_cols=98  Identities=9%  Similarity=0.098  Sum_probs=67.9

Q ss_pred             HHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        143 LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       143 ~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      +..|+.. .+..+.+||.+|.-+||-+|-.+         ...++..+++|....+..||.-.+.||+-.|.|.-..   
T Consensus       553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~---  620 (926)
T COG5116         553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK---  620 (926)
T ss_pred             HhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---
Confidence            3444443 44567788888888888777433         4567778888887677888888888888777764332   


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                          -.+..|-.++..+..-||+.|+-+++-++..
T Consensus       621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence                1234555667777888888888888876654

>KOG0413|consensus

Probab=89.38  E-value=2.1  Score=46.90  Aligned_cols=128  Identities=10%  Similarity=0.160  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh
Q psy14164        155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC  234 (361)
Q Consensus       155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l  234 (361)
                      +.||..+.-.+|++|--+...     ....+|.|++-|.......+|-+.+-|++-+|-++..-..     .-+|.|...
T Consensus       945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHHH
Confidence            458999999999998654443     2347999999998766778999999999999886654333     247889999


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC--cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG--MVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g--~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      |.+++.-||+.+.-+|++|++.+     ++.=.|  ++..+..++..    +.+++.-+-..+..+++.
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D~----~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLDA----NEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHccc----CHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998642     111123  35556666654    678887777777777753

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.37  E-value=4.1  Score=34.27  Aligned_cols=93  Identities=11%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+-.|+-+++..+...+     .++..|..=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus        18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~   92 (133)
T smart00288       18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK   92 (133)
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence            4455666777776543322     2355677888899999999999999999988 677888899999999999999875


Q ss_pred             CCCChhHHHHHHHHHHHHHh
Q psy14164        281 DALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~  300 (361)
                      . ..+.++++++..+..-..
T Consensus        93 ~-~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       93 Y-PLPLVKKRILELIQEWAD  111 (133)
T ss_pred             C-CcHHHHHHHHHHHHHHHH
Confidence            1 122389999988877664

Unpublished observations. Domain of unknown function.

>KOG1077|consensus

Probab=89.35  E-value=19  Score=38.57  Aligned_cols=169  Identities=11%  Similarity=0.195  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC
Q psy14164        117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  196 (361)
Q Consensus       117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~  196 (361)
                      +-..|-+...++-..|....+.. ..+..|-++|.+.+..+|=.|+.-+..++.. ...++.+-.+  ...++..|+.+.
T Consensus       306 ~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkter  381 (938)
T KOG1077|consen  306 KNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTER  381 (938)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhcccc
Confidence            34444444555555554433321 2477777889999999999999999999876 4455555444  888899999778


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-------hH-------HH
Q psy14164        197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-------QV-------KQ  262 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-------~~-------~~  262 (361)
                      |.++|++|+.-|-.||--  .+.+.++     .-|.+-|.+.+..+|...+.=++-|+....       +.       ..
T Consensus       382 DvSirrravDLLY~mcD~--~Nak~IV-----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag  454 (938)
T KOG1077|consen  382 DVSIRRRAVDLLYAMCDV--SNAKQIV-----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG  454 (938)
T ss_pred             chHHHHHHHHHHHHHhch--hhHHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence            999999999999999852  2333443     344555566677777666555554443210       11       11


Q ss_pred             HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       263 ~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      ..++.++-..+++..-+    +.+++..|...+...++
T Consensus       455 d~vsdeVW~RvvQiVvN----nedlq~yaak~~fe~Lq  488 (938)
T KOG1077|consen  455 DYVSDEVWYRVVQIVVN----NEDLQGYAAKRLFEYLQ  488 (938)
T ss_pred             ccccHHHHHHhheeEec----chhhhHHHHHHHHHHHh
Confidence            23345566666666553    56777777777666654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=89.25  E-value=36  Score=36.80  Aligned_cols=165  Identities=11%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-C--
Q psy14164         76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-G--  152 (361)
Q Consensus        76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-s--  152 (361)
                      -+|+|+-+.+++       |+.+.+.+-+....+.... +  ++|+. +.-.+..-.-...|  .|.++.++..|. +  
T Consensus       356 c~see~eElfEn-------Dp~eyirry~df~d~g~sp-d--laal~-fl~~~~sKrke~Tf--qgiLsf~~sil~qsaa  422 (970)
T COG5656         356 CLSEEEEELFEN-------DPDEYIRRYYDFFDNGLSP-D--LAALF-FLIISKSKRKEETF--QGILSFLLSILGQSAA  422 (970)
T ss_pred             CCChhhHHHHhc-------CHHHHHHHhcchhcCCCCh-h--HHHHH-HHHHHhcccchhhh--hhHHHHHHHHHhcccC
Confidence            466777666655       7788888887777664433 2  12221 22222222222223  366788888773 2  


Q ss_pred             -----CCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        153 -----SDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       153 -----~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                           .++.-..-|++.++++..  .-+..-..+++.=++++++.-+++ +.--++..||..||.+-.+.+..   .+-.
T Consensus       423 ~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is~~eeDfkd~---~ill  498 (970)
T COG5656         423 TPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFISTIEEDFKDN---GILL  498 (970)
T ss_pred             CCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHHHHHHhcccc---hHHH
Confidence                 223445668888888764  222223334555566777777775 45589999999999985554432   2234


Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        226 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       226 ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      ..++....+|++.+-.|+..|+.++..+..+.
T Consensus       499 ~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~  530 (970)
T COG5656         499 EAYENTHNCLKNNHLPVMIEAALALQFFIFNE  530 (970)
T ss_pred             HHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence            56777888999999999999999999998864

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.21  E-value=7.4  Score=41.46  Aligned_cols=144  Identities=17%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             CCHHHHHH-hhcC----CCHHHHHHHHHHHHHHh-hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        141 GGLPVLQP-LLEG----SDPELRWRAAETVADIV-QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       141 Gg~~~Lv~-LL~s----~~~~vr~~Aa~~Lg~ia-qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      |-+.|+|. ...+    +++.++..|--+|..+. -.+..|-      .-+|.|+..+...+++.+|.+|+-+++-++--
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~vc  964 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC  964 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence            45666665 3333    68899988888887753 3344333      35899999999768899999999999987653


Q ss_pred             ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                          +..+++.+ -..|.+-|.+.+..||+-+...++.|.-.+     .+.-.|-++.++.+|..+   |..+.+.|-..
T Consensus       965 ----fN~~~de~-t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de---da~Isdmar~f 1031 (1128)
T COG5098         965 ----FNTTADEH-THYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE---DAEISDMARHF 1031 (1128)
T ss_pred             ----hhhhhHHH-HHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC---cchHHHHHHHH
Confidence                33344332 245666677788999999999999887543     122358888999999998   99999999888


Q ss_pred             HHHHHhcCh
Q psy14164        295 LASLIKDSP  303 (361)
Q Consensus       295 L~~L~~~~~  303 (361)
                      +..++....
T Consensus      1032 ft~~a~KdN 1040 (1128)
T COG5098        1032 FTQIAKKDN 1040 (1128)
T ss_pred             HHHHHhccc
Confidence            888887554

>KOG1060|consensus

Probab=89.19  E-value=2.7  Score=45.07  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      -|+.||++.+..|...|+.+|-.+.|++|..-.     .++..|.+++.+-.-+..|...+|-++-.|
T Consensus       433 gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldti~vp~ARA~IiWLige~~  495 (968)
T KOG1060|consen  433 GLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDTILVPAARAGIIWLIGEYC  495 (968)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhhhhhhhhhceeeeeehhhh
Confidence            344445555555555555555555555543211     123344444433222344444445554443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.15  E-value=6.4  Score=36.39  Aligned_cols=148  Identities=14%  Similarity=0.217  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLL  188 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-----s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~L  188 (361)
                      .....||.-|..++...+.+..|.....--.|..+|.     ++..-+|..++.+||.+++|.. .+-..+....++|.+
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            3456788888888888888888887654333445553     2446799999999999999865 455556678999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhhC-cHHHH-HHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENEEC------LKEFIKRD-GFSVL-LRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~------~~~f~~~g-gi~~L-v~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                      ++++..+ ++.-+.-|++.+.-+..+...-      .+.|...+ .+..+ .++.+.+..++-+.|..+--.|+. +|+.
T Consensus       195 LrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~a  272 (315)
T COG5209         195 LRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHA  272 (315)
T ss_pred             HHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhH
Confidence            9999874 4566666777777776543221      23333222 22233 334455678888887776666544 5655


Q ss_pred             HHHH
Q psy14164        261 KQVL  264 (361)
Q Consensus       261 ~~~l  264 (361)
                      |+.+
T Consensus       273 R~lL  276 (315)
T COG5209         273 RALL  276 (315)
T ss_pred             HHHH
Confidence            5544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.13  E-value=1.8  Score=37.02  Aligned_cols=93  Identities=13%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCC
Q psy14164        203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED  281 (361)
Q Consensus       203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~  281 (361)
                      ..+-.|+-+++..+..-     ...+..|..=|.++++.++..|..++-.++.+ +..+...+.+..++..|+.++... 
T Consensus        19 ~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-   92 (144)
T cd03568          19 GLILDVCDKVKSDENGA-----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-   92 (144)
T ss_pred             HHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-
Confidence            34444555555433221     23456777778889999999999999999987 667888999999999999999883 


Q ss_pred             CCChhHHHHHHHHHHHHHhcC
Q psy14164        282 ALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       282 ~~d~~~~e~al~aL~~L~~~~  302 (361)
                       .+..++++++..|...+..-
T Consensus        93 -~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          93 -VHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             -CCHHHHHHHHHHHHHHHHHh
Confidence             28999999999998776433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2062|consensus

Probab=88.99  E-value=1.9  Score=45.89  Aligned_cols=89  Identities=10%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      ..+.+||..|..+||-++-.+|.         .+|..+.+|+...++.||.-|+.||+=.|.|.-.. .      .+..|
T Consensus       566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-e------Ai~lL  629 (929)
T KOG2062|consen  566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-E------AINLL  629 (929)
T ss_pred             ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-H------HHHHH
Confidence            45667777777777777655553         46677788877677788888888888777764321 1      12233


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        232 LRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       232 v~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      -.+.+++..-||+-|+-+++-+...
T Consensus       630 epl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  630 EPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             hhhhcChHHHHHHHHHHHHHHHHHh
Confidence            3344455667777777776655543

>KOG1566|consensus

Probab=88.96  E-value=23  Score=34.28  Aligned_cols=146  Identities=13%  Similarity=0.161  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhhCc----HHHHHHhhccCCHHHHHHHHHHHHHHhcCCc---hHHHHHHhCCcHH
Q psy14164        199 TVQVKSLYAVSCLVRENEECLKEFIKRDG----FSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVKQVLLSMGMVE  271 (361)
Q Consensus       199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~gg----i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~---~~~~~l~~~g~i~  271 (361)
                      .+...|......+.+.+.....+|+..+-    .+.--.+|.+.+.-+++.+.-++..+..+.+   ....++.+..-+.
T Consensus       181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLK  260 (342)
T KOG1566|consen  181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLK  260 (342)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHH
Confidence            46667777777777777777788887664    3345668889999999999999999887533   3345666667789


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcC--hHHHHhhccC-cchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHh
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDS--PEAQSLCRLE-PLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~--~~~~~~~~~~-~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~  347 (361)
                      .++.+|+.+   ...+|-.|-...+..+...  |+-+..|-.. +-.|.+.+-...-.....+.+.+|-.|..+-+...
T Consensus       261 lmM~llrdk---skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l  336 (342)
T KOG1566|consen  261 LMMNLLRDK---SKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQL  336 (342)
T ss_pred             HHHHHhhCc---cccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhc
Confidence            999999988   8889989999888877644  3445444222 21333333333222223557777777766655543

>KOG4535|consensus

Probab=88.90  E-value=1.5  Score=44.57  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=64.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc----CChh---hHHHHH
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR----ENEE---CLKEFI  223 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r----~~~~---~~~~f~  223 (361)
                      .|.+.-++..|.+.++-.+=+...-++...-..+...++..|.+ +.-.+|.|++|++|||..    +.|.   +...|+
T Consensus       401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s  479 (728)
T KOG4535|consen  401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS  479 (728)
T ss_pred             chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence            45566688888888887775544444444444556666666653 457899999999999864    3333   233333


Q ss_pred             hhCcHHHHHHh-hc--cCCHHHHHHHHHHHHHHhc
Q psy14164        224 KRDGFSVLLRC-IQ--SKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       224 ~~ggi~~Lv~l-L~--s~~~~v~~kA~~ll~~L~~  255 (361)
                      .. -+..+... ..  -...||+.+|..++.++..
T Consensus       480 g~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  480 GL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            11 11222222 11  2368999999999999875

>KOG2933|consensus

Probab=88.53  E-value=4.6  Score=38.88  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc--cHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHH
Q psy14164         98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSID--YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPF  174 (361)
Q Consensus        98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id--na~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~  174 (361)
                      ..+++++..|.+.  +=+.++++|.-+..|.+-.-  ....|++  .+..+++-+++....|-..|+.+++.+.++ |..
T Consensus        88 ~al~~~l~~L~s~--dW~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~ln~~  163 (334)
T KOG2933|consen   88 AALKQALKKLSSD--DWEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS  163 (334)
T ss_pred             HHHHHHHHHhchH--HHHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777663  33778888888887765332  1233443  477778888999999999999999999986 333


Q ss_pred             HHHHHHhcChHHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHH
Q psy14164        175 SQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA  251 (361)
Q Consensus       175 ~q~~v~~~g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~  251 (361)
                      +++      .+..++..|.+   ..+.-|+..|--||=.|+.+-.++       -.++.|+.+++....+++.+++.+..
T Consensus       164 i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~  230 (334)
T KOG2933|consen  164 IDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFS  230 (334)
T ss_pred             HHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcccc
Confidence            333      33444443332   234578999999999999865544       23556777788889999999998777


Q ss_pred             HHhc
Q psy14164        252 CLCT  255 (361)
Q Consensus       252 ~L~~  255 (361)
                      +...
T Consensus       231 ~~v~  234 (334)
T KOG2933|consen  231 RCVI  234 (334)
T ss_pred             ccce
Confidence            6554

>KOG1020|consensus

Probab=88.44  E-value=24  Score=40.78  Aligned_cols=172  Identities=14%  Similarity=0.153  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164        157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ  236 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~  236 (361)
                      -...|.|+.-.++++.|..|..   -+.+..++..|.+ +...+|.+|+-+||.|+.-.|...   .....-..+..=+.
T Consensus       793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~  865 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLN  865 (1692)
T ss_pred             cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhc
Confidence            4566778888888888776653   3578888999985 677999999999999987544321   11111122233355


Q ss_pred             cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchH
Q psy14164        237 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNL  316 (361)
Q Consensus       237 s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l  316 (361)
                      +....||..|+-+++..+-..++......     ..+.+-+..+   ..-+|.+++..+.-+....|+...        +
T Consensus       866 DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt---gvsVRKRvIKIlrdic~e~pdf~~--------i  929 (1692)
T KOG1020|consen  866 DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT---GVSVRKRVIKILRDICEETPDFSK--------I  929 (1692)
T ss_pred             cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC---chhHHHHHHHHHHHHHHhCCChhh--------H
Confidence            67889999999999977776665554432     3455555556   789999999999999888775321        1


Q ss_pred             HHHHHHHHHhhcChhhhHHHHHHHH-HHHHHhcCCCCC
Q psy14164        317 KFKLNFIKEKHAGNEVYHKELEYVN-SVLTEVFEEDSP  353 (361)
Q Consensus       317 ~~~Le~~~~~l~~~~e~~~e~~~~~-~il~~~f~~~~~  353 (361)
                      .+.+-+.++.....|  ..+.+.+. .+.+.||....+
T Consensus       930 ~~~cakmlrRv~DEE--g~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  930 VDMCAKMLRRVNDEE--GNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             HHHHHHHHHHhccch--hHHHHHHHHHHHHHhccCCCc
Confidence            233334444443221  12445444 445567776554

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=87.99  E-value=1.9  Score=35.01  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWR  160 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~  160 (361)
                      |+-+.-..+..|..+....+.=-.|+++|+++.|+.||.|++.+|...
T Consensus        59 SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~  106 (108)
T PF08216_consen   59 SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID  106 (108)
T ss_pred             hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence            345566777778888877777788999999999999999999887643

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.70  E-value=7.5  Score=31.46  Aligned_cols=93  Identities=14%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+..|+-+++.++....     ..+..|..-|.+++.+++.+|..++-+++.+ ++.+...+.+..++..++.+...+
T Consensus        18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~   92 (115)
T cd00197          18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK   92 (115)
T ss_pred             HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence            4455566666665433322     2455677777888999999999999999987 567788888888887776642221


Q ss_pred             ---CCCChhHHHHHHHHHHHHH
Q psy14164        281 ---DALDTEMNEHLLSALASLI  299 (361)
Q Consensus       281 ---~~~d~~~~e~al~aL~~L~  299 (361)
                         ...+..+|++++..+...+
T Consensus        93 ~~~~~~~~~Vr~k~~~l~~~w~  114 (115)
T cd00197          93 LLGDDVSTNVREKAIELVQLWA  114 (115)
T ss_pred             cccCCCChHHHHHHHHHHHHHh
Confidence               1236789999988876543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG2032|consensus

Probab=87.56  E-value=9.6  Score=38.95  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=76.2

Q ss_pred             HHHHHCCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHH
Q psy14164        135 NDFLKMGGLPVLQPLL----EGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAV  208 (361)
Q Consensus       135 ~~~~~~Gg~~~Lv~LL----~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~AL  208 (361)
                      ..+-+.|.+.-++..|    .+|+..+|..|++.|||.+..-|.   .+..+  -.+..++.-|.++.+..|.-.++.+|
T Consensus       248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~L  324 (533)
T KOG2032|consen  248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCL  324 (533)
T ss_pred             ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            3344667666665544    358889999999999999998443   23322  24555666555556678887777777


Q ss_pred             HHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       209 S~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      ..+.-.-..-.-.++-.+..-.+..++.+.+.++|..|-+++..|+.
T Consensus       325 t~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  325 TMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence            77654211111112222333456677788899999999999888874

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=87.45  E-value=10  Score=36.63  Aligned_cols=134  Identities=13%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             HHHHHHhcChHHHHHHhhcc------CC----------------CHHHHHHHHHHHHHHhcCChhhH-------------
Q psy14164        175 SQNFIIQTDFLNLLLTSIEH------DS----------------NTTVQVKSLYAVSCLVRENEECL-------------  219 (361)
Q Consensus       175 ~q~~v~~~g~l~~Ll~LL~~------~~----------------~~~v~~~Al~ALS~l~r~~~~~~-------------  219 (361)
                      +|..+.+.|.+|.|-++++.      .+                +..+|..-+..|.++|.++....             
T Consensus         1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~   80 (303)
T PF12463_consen    1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES   80 (303)
T ss_pred             ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence            47788899999999888742      11                12478888888888887432211             


Q ss_pred             ------HHHH--hhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhccCCCCCChhH
Q psy14164        220 ------KEFI--KRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDALDTEM  287 (361)
Q Consensus       220 ------~~f~--~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~  287 (361)
                            ....  +.|-+..+++.+..  .+...|..-+.+|-+++++.+  ..+..+.+.|+++.++.-+-++...+..+
T Consensus        81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v  160 (303)
T PF12463_consen   81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV  160 (303)
T ss_pred             cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence                  0010  13445566666654  378889999999999999844  45668889999999998887652224568


Q ss_pred             HHHHHHHHHHHHhcChHHHHh
Q psy14164        288 NEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       288 ~e~al~aL~~L~~~~~~~~~~  308 (361)
                      .......|+.|.+.++.....
T Consensus       161 ~Q~~FDLLGELiK~n~~~f~~  181 (303)
T PF12463_consen  161 LQSNFDLLGELIKFNRDAFQR  181 (303)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            888999999999999876554

Proteins in this family are typically between 399 and 797 amino acids in length.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.30  E-value=4.2  Score=34.43  Aligned_cols=94  Identities=13%  Similarity=0.216  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+.-|+-+++..+.....     .+..|..=|.++++.++..|..++-.++.+ ++.+...+.+..++..|..++.+.
T Consensus        23 w~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~   97 (140)
T PF00790_consen   23 WSLILEICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK   97 (140)
T ss_dssp             HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence            45666778888776444332     356778888899999999999999999987 478888888889999999998865


Q ss_pred             CCCChh---HHHHHHHHHHHHHhcC
Q psy14164        281 DALDTE---MNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ~~~d~~---~~e~al~aL~~L~~~~  302 (361)
                      .  ...   ++++++..|.......
T Consensus        98 ~--~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   98 K--TDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             T--THHHSHHHHHHHHHHHHHHHHT
T ss_pred             C--CCchhHHHHHHHHHHHHHHHHH
Confidence            1  223   8999999887777544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.12  E-value=6.2  Score=41.09  Aligned_cols=131  Identities=12%  Similarity=0.150  Sum_probs=91.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                      +-.+|.+.++-+|-..+..++.+--+.       -..|++..|+..--++.+..||+.|+-||+-+|...+.        
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------  585 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------  585 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence            445778888888888887777543221       12467888888855567789999999999988765443        


Q ss_pred             CcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        226 DGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       226 ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                       .+...+++|. +.++-||--.++++.-.|.+.-...       .+..|-.|...+   ..-+|..|+-++..|+..|
T Consensus       586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~---~dfVRQ~AmIa~~mIl~Q~  652 (926)
T COG5116         586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT---NDFVRQSAMIAVGMILMQC  652 (926)
T ss_pred             -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc---HHHHHHHHHHHHHHHHhhc
Confidence             3444566665 4589999999999987776632211       234444555555   6778889999999888665

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=87.03  E-value=6.5  Score=34.18  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        143 LPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       143 ~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      ++.|+++|+. .+..+|..+.++||.+=.=+|...+.+....-     ..-..+.........     -+..+..+..++
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~-----l~~~~~~~~~ee   81 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDIS-----LPMMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhH-----HhhccCCCchHH
Confidence            4566677765 46899999999999998878865553322111     000000010111111     122233335567


Q ss_pred             HHhhCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~-~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      |+-...+..|++.|+++. ..-...+..+|.++... +.....++-  -+++.+++.+++.   +...+|..+.-|..|+
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~---~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTC---PDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence            777778888888888763 33333455566666533 222233332  3678888888866   5678887777766655

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=86.64  E-value=8.8  Score=40.14  Aligned_cols=108  Identities=12%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE--HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL  231 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~--~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L  231 (361)
                      +..-+..++++|||+-.  |.         .++.|...+.  ...+..+|..|+|||..++..++.....+        |
T Consensus       459 ~~~~~~~~LkaLGN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~--------l  519 (574)
T smart00638      459 DEEEIQLYLKALGNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV--------L  519 (574)
T ss_pred             CchheeeHHHhhhccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH--------H
Confidence            44445566666666542  21         3445555554  22456899999999999987666544433        3


Q ss_pred             HHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHH
Q psy14164        232 LRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL  292 (361)
Q Consensus       232 v~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al  292 (361)
                      ..++..  .+..+|..|..++-.   .+|.       ...+..++..+..+  .+.++.-.+.
T Consensus       520 ~~i~~n~~e~~EvRiaA~~~lm~---t~P~-------~~~l~~ia~~l~~E--~~~QV~sfv~  570 (574)
T smart00638      520 LPIYLNRAEPPEVRMAAVLVLME---TKPS-------VALLQRIAELLNKE--PNLQVASFVY  570 (574)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhc--CcHHHHHHhH
Confidence            555544  377888887766543   3343       23566777777664  2445544433

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.54  E-value=7.8  Score=33.79  Aligned_cols=115  Identities=11%  Similarity=0.205  Sum_probs=80.9

Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc--HHHHHHhhccC-CHHHHHHHHHHHHHHhc---CC
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG--FSVLLRCIQSK-KEKLVIKSCFLIACLCT---DN  257 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg--i~~Lv~lL~s~-~~~v~~kA~~ll~~L~~---~~  257 (361)
                      ....+.++|.+ ++..-|..++.-+..++..++  .+.|.++++  +..|+..|+++ +..++.-++.++..|..   +.
T Consensus        26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            55667888886 566888899999999888654  345655543  46778888875 57788888888887774   35


Q ss_pred             chHHHHHHhC---CcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        258 NQVKQVLLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       258 ~~~~~~l~~~---g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      |+..+.+.--   +++..++.+++.     ....+.++.+|..++..+|...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt~  149 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHPTTF  149 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCCccc
Confidence            6655554433   345556665552     4678899999999999888644

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=86.50  E-value=26  Score=34.82  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhc------CCCHHHHHHHHHHHHH
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLE------GSDPELRWRAAETVAD  167 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~------s~~~~vr~~Aa~~Lg~  167 (361)
                      |+.+.+++-+    +.++....+.+|.+-|..+++.-.  ..+..  .+ ..+-.+|+      +.+..-+..|+.+++.
T Consensus       210 dP~EYIrrd~----e~sd~~TrR~AA~dfl~~L~~~~~--~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  210 DPEEYIRRDL----EGSDSDTRRRAACDFLRSLCKKFE--KQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             SHHHHHHHHS----CSS---SHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHhhc----cccccCCcHHHHHHHHHHHHHHHh--HHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            5566666643    224445677888888888875322  11111  11 22333444      3556788899999999


Q ss_pred             HhhcCHHH------------HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh
Q psy14164        168 IVQNNPFS------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI  235 (361)
Q Consensus       168 iaqnn~~~------------q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL  235 (361)
                      ++......            =..+...-++|-|-  -.....+-+|..|++.++..-..-+..  .+  .+.++.++.+|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHh
Confidence            98654321            12334444556554  122345689999999999876544432  22  35899999999


Q ss_pred             ccCCHHHHHHHHHHH
Q psy14164        236 QSKKEKLVIKSCFLI  250 (361)
Q Consensus       236 ~s~~~~v~~kA~~ll  250 (361)
                      .+++.-|..-||.+|
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.46  E-value=3.9  Score=43.43  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh------cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-  215 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~------~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-  215 (361)
                      +..++.||.+++-.+|..-..+.||++..-..--+ +++      ...+..|..-|. +..+-+|.||+..+++|+--+ 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~s  378 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNS  378 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcc
Confidence            56778899999999999999999999864211111 111      123344444444 467899999999999998542 


Q ss_pred             --hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        216 --EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       216 --~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                        +.....|     +...++.|++.+.-||++|..+++-|+..+|
T Consensus       379 k~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         379 KTVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             cccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence              2233333     4577889999999999999999999987665

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.31  E-value=25  Score=36.95  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        135 NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       135 ~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      .+|+. |-+..+++-+.+++..||.+++.+|+-++.+--+. +..+-.|.+..|.+-+-. ..+.||..|+.+|+..-..
T Consensus        86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~  162 (885)
T COG5218          86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFD-REKAVRREAVKVLCYYQEM  162 (885)
T ss_pred             hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhc
Confidence            45553 56778888889999999999999999988553333 345556777777765543 3569999999999986432


Q ss_pred             ChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHH
Q psy14164        215 NEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFL  249 (361)
Q Consensus       215 ~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~l  249 (361)
                       ...-+-++    ...|+.+++.+ +..||+-|..-
T Consensus       163 -~~neen~~----~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         163 -ELNEENRI----VNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             -cCChHHHH----HHHHHHHHhcCcHHHHHHHHHHH
Confidence             11222232    23666677654 67777766543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=86.03  E-value=10  Score=35.42  Aligned_cols=178  Identities=21%  Similarity=0.203  Sum_probs=104.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC-h-HHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD-F-LNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g-~-l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ...++..+.+=..+-+-++..++.-++-+ |..-..+...+ . ...+..++..   ...+..+.-++..++|+..+ +.
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~  142 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP  142 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence            45556666665556688899999877764 44444443332 2 3344444432   24678889999999999885 44


Q ss_pred             hHHHHHhhCc--HHHHHHhhccC----CHHHHHHHHHHHHHHhcCCchHH-HHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164        218 CLKEFIKRDG--FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEH  290 (361)
Q Consensus       218 ~~~~f~~~gg--i~~Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~  290 (361)
                      ....+..+..  +-..+..+.+.    +..+|.-++.++.|++......+ ..=....++..+++.+... ..|.+..-.
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~Ea~~R  221 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDEEALYR  221 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCHHHHHH
Confidence            5566665433  33333333333    68899999999999874210000 0000012345555533221 238888889


Q ss_pred             HHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHH
Q psy14164        291 LLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE  325 (361)
Q Consensus       291 al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~  325 (361)
                      ++-||++++...+.....+..  +++..++.....
T Consensus       222 ~LvAlGtL~~~~~~~~~~~~~--l~~~~~~~~~~~  254 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQLAKS--LDVKSVLSKKAN  254 (268)
T ss_dssp             HHHHHHHHHCCSHHHHHHCCC--CTHHHHHHHHHH
T ss_pred             HHHHHHHHhccChhHHHHHHH--cChHHHHHHHHh
Confidence            999999999777776766644  344555554433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.75  E-value=31  Score=32.33  Aligned_cols=99  Identities=11%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCH-------HHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-------TVQVKSLYAVSCLVRENEECLKEFIKR  225 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~-------~v~~~Al~ALS~l~r~~~~~~~~f~~~  225 (361)
                      ++......|+.+|+..           -+.-++|+|+++++.+.+.       .+-...-..+.+++            .
T Consensus        54 ~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~  110 (249)
T PF06685_consen   54 EEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------D  110 (249)
T ss_pred             cchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------C
Confidence            3344455666666643           3456899999999864321       11122222233333            3


Q ss_pred             CcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHh
Q psy14164        226 DGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL  276 (361)
Q Consensus       226 ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~l  276 (361)
                      |-++.|.+++.++  +.-+|..|..++..++..++..|..+++  ++..+...
T Consensus       111 G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~  161 (249)
T PF06685_consen  111 GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY  161 (249)
T ss_pred             CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence            4456666666655  5677888999999999998888888763  44444443

The function of this family is unknown.

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=85.60  E-value=8.8  Score=31.38  Aligned_cols=68  Identities=24%  Similarity=0.370  Sum_probs=46.6

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164        143 LPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       143 ~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      +|.+...|. +..++.|..+..+++.++..-+-..+.+ + ..+..+++-...   ....+.++-+|..++.+.
T Consensus         8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~-~l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N-ALMESILKNWTQ---ETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H-HHHHHHHhcccc---chhHHHHHHHHHHHHHcc
Confidence            688888888 7889999999999999998766444322 1 133333333332   122578999999998754

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=85.15  E-value=23  Score=31.43  Aligned_cols=144  Identities=19%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  179 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v  179 (361)
                      ++.+++....  .+...+..|++-+.-.+.+ ...+   +.-.+|.|+.|..++++.+|..|...+..+.+..+..=..=
T Consensus        10 l~~Il~~~~~--~~~~vr~~Al~~l~~il~q-GLvn---P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen   10 LKNILELCLS--SDDSVRLAALQVLELILRQ-GLVN---PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHHHHhc-CCCC---hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3444443333  3457788888888777653 2222   23368999999999999999999999999998877643332


Q ss_pred             HhcChHHHHHH---hhccCCCHHH---HHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--------CHHHHHH
Q psy14164        180 IQTDFLNLLLT---SIEHDSNTTV---QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--------KEKLVIK  245 (361)
Q Consensus       180 ~~~g~l~~Ll~---LL~~~~~~~v---~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--------~~~v~~k  245 (361)
                      +-.| +..-..   -+..+.....   ...-+..+-.+++++......|+.     .|++.+...        ...-...
T Consensus        84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHH
Confidence            2223 322222   1222211111   455666666788888888888862     333333321        2333455


Q ss_pred             HHHHHHHHhc
Q psy14164        246 SCFLIACLCT  255 (361)
Q Consensus       246 A~~ll~~L~~  255 (361)
                      ..|+..+|+.
T Consensus       158 ~~Fla~nLA~  167 (187)
T PF12830_consen  158 LLFLAENLAT  167 (187)
T ss_pred             HHHHHHHHhc
Confidence            6666666664

>KOG2062|consensus

Probab=85.07  E-value=9.5  Score=40.87  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=93.1

Q ss_pred             HCCCHHHHHH-hhcCCCHHHHHHHHHHHHHH--hhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164        139 KMGGLPVLQP-LLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       139 ~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~i--aqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      ..+...+++. ++...++-+|......++-.  .++|         .+++..|+..--++.+..||+.|+-||+=++-..
T Consensus       516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d  586 (929)
T KOG2062|consen  516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD  586 (929)
T ss_pred             hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence            3445666666 77888999998877766643  3332         3577888888666788899999999999888766


Q ss_pred             hhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        216 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       216 ~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                      |..         .+..+.+|.. -++-||--|+.++.-.|.+. -.+..+   +++++|+   +.+   ..-+|.-|+-+
T Consensus       587 p~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~eAi---~lLepl~---~D~---~~fVRQgAlIa  647 (929)
T KOG2062|consen  587 PEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKEAI---NLLEPLT---SDP---VDFVRQGALIA  647 (929)
T ss_pred             hhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHHHH---HHHhhhh---cCh---HHHHHHHHHHH
Confidence            654         3344666654 48999999999999777652 222221   2333333   333   55688888888


Q ss_pred             HHHHHhcC
Q psy14164        295 LASLIKDS  302 (361)
Q Consensus       295 L~~L~~~~  302 (361)
                      +..|+..+
T Consensus       648 ~amIm~Q~  655 (929)
T KOG2062|consen  648 LAMIMIQQ  655 (929)
T ss_pred             HHHHHHhc
Confidence            88887544

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.77  E-value=16  Score=38.44  Aligned_cols=120  Identities=18%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             HHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC--CCHHHHHHHHHHHHHHhcCCh
Q psy14164        143 LPVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       143 ~~~Lv~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      ++.|...|.    ..+..-+..++++|||+-.  |         ..++.|..++...  .+..+|..|+||+..++..++
T Consensus       488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~  556 (618)
T PF01347_consen  488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP  556 (618)
T ss_dssp             THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence            444555444    3556777888888888742  2         3688888888753  357899999999999977776


Q ss_pred             hhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHH
Q psy14164        217 ECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  293 (361)
Q Consensus       217 ~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~  293 (361)
                      .....        .|..++...  +..+|..|..+|-   ..+|..       ..+..+...|...  .+.++.-.+..
T Consensus       557 ~~v~~--------~l~~I~~n~~e~~EvRiaA~~~lm---~~~P~~-------~~l~~i~~~l~~E--~~~QV~sfv~S  615 (618)
T PF01347_consen  557 EKVRE--------ILLPIFMNTTEDPEVRIAAYLILM---RCNPSP-------SVLQRIAQSLWNE--PSNQVASFVYS  615 (618)
T ss_dssp             HHHHH--------HHHHHHH-TTS-HHHHHHHHHHHH---HT---H-------HHHHHHHHHHTT---S-HHHHHHHHH
T ss_pred             HHHHH--------HHHHHhcCCCCChhHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhC--chHHHHHHHHH
Confidence            54433        346666543  6778887765544   333432       3566777777654  24555444433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=84.48  E-value=4.2  Score=36.69  Aligned_cols=116  Identities=13%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             HHHHHCCCHHHHHHhhcC---CC---------------HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC
Q psy14164        135 NDFLKMGGLPVLQPLLEG---SD---------------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  196 (361)
Q Consensus       135 ~~~~~~Gg~~~Lv~LL~s---~~---------------~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~  196 (361)
                      +-|..+|++..++.+|..   ..               ..+-..+.++|...+.+|+.+|..+.+.  ++.++..+... 
T Consensus        37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-  113 (207)
T PF01365_consen   37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-  113 (207)
T ss_dssp             HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-
Confidence            345666777777776653   11               4677899999999999999999998774  55444444321 


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      ....-..+..++..+.++|+.....+.+.. +..++.++....  -+.+-.-+++.|+..
T Consensus       114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~  170 (207)
T PF01365_consen  114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC  170 (207)
T ss_dssp             CH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred             hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence            112224578889999999999888887655 888888887632  223344456666553

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=83.88  E-value=19  Score=33.93  Aligned_cols=143  Identities=20%  Similarity=0.219  Sum_probs=84.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164        146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRENEECLKEFIK  224 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-~~~~v~~~Al~ALS~l~r~~~~~~~~f~~  224 (361)
                      |=..|.++++.+|..|..+|+.+...-|...   +...-+..|+..+.+. .|......++.++..+++........   
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~---   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES---   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence            3357899999999999999999998766321   3333345555544321 23344445577777776533211111   


Q ss_pred             hCcHHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCCchHHHHHHhC--CcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        225 RDGFSVLLRCIQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       225 ~ggi~~Lv~lL~-----s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                        +...+..+.+     +-....|..+-.++..|+....   ..+.+.  +++..++++....  .|+.-.-.+...+..
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~  150 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGE--KDPRNLLLSFKLLKV  150 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccC--CCHHHHHHHHHHHHH
Confidence              2222222222     2356777788888888876532   333333  5678888887754  477777777776666


Q ss_pred             HHhc
Q psy14164        298 LIKD  301 (361)
Q Consensus       298 L~~~  301 (361)
                      +++.
T Consensus       151 i~~~  154 (262)
T PF14500_consen  151 ILQE  154 (262)
T ss_pred             HHHh
Confidence            6554

>KOG0414|consensus

Probab=83.82  E-value=6.2  Score=44.13  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHh---cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~---~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      +..|+.+|.+.+-.+|..-..++||++-.   ++. ++...+   ...+..|..-+. +.+.-||.+++.-...|++.+.
T Consensus       314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e-~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s  391 (1251)
T KOG0414|consen  314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEE-LEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS  391 (1251)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence            55677888899999999999999998753   222 111111   124555555554 3677999999999999998654


Q ss_pred             hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      .....+  ...+...+.-|.+.+.-||++|..+++.+...+|
T Consensus       392 ~p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P  431 (1251)
T KOG0414|consen  392 IPLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP  431 (1251)
T ss_pred             CCccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence            332222  2345566778888999999999999999998876

>KOG0567|consensus

Probab=83.76  E-value=40  Score=31.94  Aligned_cols=59  Identities=31%  Similarity=0.423  Sum_probs=40.7

Q ss_pred             CHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        142 GLPVLQPLL--EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       142 g~~~Lv~LL--~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      .+++|+..|  .+..+-||..|+.++|.+-.           .+.++.|-++. +++...|+..+.-||-.+-
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle  128 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYI-KDPCKEVRETCELAIKRLE  128 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHh-cCCccccchHHHHHHHHHH
Confidence            588888865  46788999999999998762           23455555666 3455667666666665553

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=83.46  E-value=13  Score=29.80  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh
Q psy14164        156 ELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC  234 (361)
Q Consensus       156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l  234 (361)
                      +||.+|+.=|-+=-.++--+...+. ..+.+..|+.-+... +......++.-|+.+++ +|.+...+.+.|+...|-++
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKL   79 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHH
Confidence            5777777655544333333333343 456788888888864 44588889999999988 57777888889999987776


Q ss_pred             hccCCHHHHHHHHHH
Q psy14164        235 IQSKKEKLVIKSCFL  249 (361)
Q Consensus       235 L~s~~~~v~~kA~~l  249 (361)
                      -...++..+...-.+
T Consensus        80 r~~~~~~~~~~id~i   94 (98)
T PF14726_consen   80 RPNVEPNLQAEIDEI   94 (98)
T ss_pred             HhcCCHHHHHHHHHH
Confidence            655566666555443

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=83.17  E-value=9.2  Score=31.85  Aligned_cols=79  Identities=10%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH-HhhccCcchHHHHHHHHHH---hhcChhhhHHHHHHHHHHH
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ-SLCRLEPLNLKFKLNFIKE---KHAGNEVYHKELEYVNSVL  344 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~-~~~~~~~l~l~~~Le~~~~---~l~~~~e~~~e~~~~~~il  344 (361)
                      ++..|.+=|...   +.-++-++|..|.+|+...+... ..++. +......+.+...   .+.+...++.+++.|..++
T Consensus        39 i~d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~  114 (122)
T cd03572          39 LLEYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI  114 (122)
T ss_pred             HHHHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence            466777778877   78888999999999998775433 33322 2111112222222   2234557788899999999


Q ss_pred             HHhcCCC
Q psy14164        345 TEVFEED  351 (361)
Q Consensus       345 ~~~f~~~  351 (361)
                      +..|+.+
T Consensus       115 ~~if~~~  121 (122)
T cd03572         115 KAIFSYS  121 (122)
T ss_pred             HHHhccC
Confidence            9999865

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG3665|consensus

Probab=83.13  E-value=56  Score=35.35  Aligned_cols=95  Identities=26%  Similarity=0.326  Sum_probs=66.6

Q ss_pred             HHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhccCCCCC
Q psy14164        207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDAL  283 (361)
Q Consensus       207 ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~  283 (361)
                      +|.+++-.++..-..|++.||...+..++.. +...++.++...+.+++...+  +.........+ ..+..++...  .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w--~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKW--D  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhc--c
Confidence            5667888889999999999999999999986 478999999999999987532  12221111111 1233344444  0


Q ss_pred             ChhHHHHHHHHHHHHHhcChH
Q psy14164        284 DTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       284 d~~~~e~al~aL~~L~~~~~~  304 (361)
                      +.+.--.+...|..++.+++.
T Consensus       571 ~~ersY~~~siLa~ll~~~~~  591 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEK  591 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCc
Confidence            336677888888888887765

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.64  E-value=5.4  Score=31.45  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      ...+.-|.++..-+|..+...++.|+....  .....-.+++..+...|+.+   |+-+--.|..+|..|+...|.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence            345566788888899999999999998754  12222245677788889888   999999999999999988876

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=82.47  E-value=26  Score=33.28  Aligned_cols=72  Identities=14%  Similarity=0.326  Sum_probs=48.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH-HHHHhcChHHHHHH----hhc---c----CCCHHHHHHHHHHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLT----SIE---H----DSNTTVQVKSLYAVS  209 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q-~~v~~~g~l~~Ll~----LL~---~----~~~~~v~~~Al~ALS  209 (361)
                      .+|+++.++.+.++.+|..++.+|..+..+-+... ..+...|..+.+-.    +|.   .    +.+..+-..|.-||-
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            38899999999999999999999999998776544 33556665544333    332   1    123345566666666


Q ss_pred             HHhc
Q psy14164        210 CLVR  213 (361)
Q Consensus       210 ~l~r  213 (361)
                      .+++
T Consensus       200 ~L~~  203 (282)
T PF10521_consen  200 SLLK  203 (282)
T ss_pred             HHHH
Confidence            6643

>PLN03205 ATR interacting protein; Provisional

Probab=82.18  E-value=17  Score=36.33  Aligned_cols=164  Identities=10%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHhcChHH---HHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLN---LLLTSIEHDSNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~~g~l~---~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      +++|+.|..-++..+..+++++|-.+.|+   |..--++-.+.+.+.   .+.+.....+.+.||..|++..--|++...
T Consensus       325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn  404 (652)
T PLN03205        325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD  404 (652)
T ss_pred             HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence            56667777778999999999988877653   322222222333333   333333223456788888887766666533


Q ss_pred             h--hHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHH---------------------hC---Cc
Q psy14164        217 E--CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLL---------------------SM---GM  269 (361)
Q Consensus       217 ~--~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~---------------------~~---g~  269 (361)
                      +  ..+.|.....++.+-++|+.. ...||+.|..++.-|+. .|.....|-                     ..   .+
T Consensus       405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI  483 (652)
T PLN03205        405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI  483 (652)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence            2  355676667788888999865 78999999988876653 221111111                     01   23


Q ss_pred             HHHHHHhccCC--CCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        270 VEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       270 i~~Lv~lL~~~--~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      +..|.+++...  +..|.+++..+.-.|..++..+....+
T Consensus       484 legLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfE  523 (652)
T PLN03205        484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYE  523 (652)
T ss_pred             HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCce
Confidence            56677777665  345778888998888888887765443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=81.79  E-value=15  Score=34.02  Aligned_cols=183  Identities=15%  Similarity=0.213  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhhcCc-ccHHHHHHCCC-HHHHHH-------hhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164        116 ICIGALDNLSDYICSI-DYANDFLKMGG-LPVLQP-------LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT  182 (361)
Q Consensus       116 ~~~~Al~~L~~lve~i-dna~~~~~~Gg-~~~Lv~-------LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~  182 (361)
                      .|+.||++|..--++. |.|-.+-..-| ...|++       +|+    +....-|...+-.|-.+....|+.+..|+++
T Consensus        61 ~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~A  140 (315)
T COG5209          61 PKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDA  140 (315)
T ss_pred             HHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeec
Confidence            3455777776655543 44443333333 333333       122    1223344444444455566789999999887


Q ss_pred             Ch---HHHHHHhhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        183 DF---LNLLLTSIE-HDSNTTVQVKSLYAVSCLVRENEECLKEF-IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       183 g~---l~~Ll~LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f-~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      ..   +-+.+...+ +.+-+.+|..++..|++++.+..+-...| .....+|.+.+++..+++--|.-|+|.+.-+...+
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            53   222333333 33446799999999999999765544444 45678999999999999999999999998887755


Q ss_pred             chHH------HHHH-hCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        258 NQVK------QVLL-SMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       258 ~~~~------~~l~-~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      .-..      +.+. -..++..++..+ +.+   ...+..+++++-..+..+
T Consensus       221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeecCC
Confidence            3211      1111 122344444333 334   677888888887666543

>KOG1943|consensus

Probab=81.61  E-value=49  Score=37.04  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHH--hhC
Q psy14164        152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE---CLKEFI--KRD  226 (361)
Q Consensus       152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~---~~~~f~--~~g  226 (361)
                      |=+..+|+.|+++|..++.-.|+    .+..+.+|+|+....+ .+...|--+.-|.+.++.+...   ....+.  +..
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~  629 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA  629 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence            56899999999999999987775    3455788999887775 4667776666666666543221   111111  112


Q ss_pred             cHHHHH-----HhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        227 GFSVLL-----RCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       227 gi~~Lv-----~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      |++.++     .-++.+ ....+.-.+.+|..+..+.+.....++..++-..+.+.+..+   + .+|+.+.+++..+..
T Consensus       630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---N-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---H-HHHHHHHHHHHHHHH
Confidence            322222     222222 245566667777777777776777777777777777777554   4 888989998888875


Q ss_pred             c
Q psy14164        301 D  301 (361)
Q Consensus       301 ~  301 (361)
                      .
T Consensus       706 ~  706 (1133)
T KOG1943|consen  706 T  706 (1133)
T ss_pred             H
Confidence            3

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=81.05  E-value=25  Score=34.76  Aligned_cols=91  Identities=18%  Similarity=0.273  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHH-HHHHHHHhhcCHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRA-AETVADIVQNNPFSQNF  178 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~A-a~~Lg~iaqnn~~~q~~  178 (361)
                      .-++.-|. +..+...|-.++-.|..-+.+.+....|...|....+++.+ ..++..+-..+ +-++..+.+.. .....
T Consensus        24 ~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~l  101 (361)
T PF07814_consen   24 EYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMHL  101 (361)
T ss_pred             HHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchhh
Confidence            33444444 34455678788888888888888999999999999999988 44444344444 44444444443 33444


Q ss_pred             HHhcChHHHHHHhhc
Q psy14164        179 IIQTDFLNLLLTSIE  193 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~  193 (361)
                      +.+.+.+..+++|+.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            456677777788887

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=80.49  E-value=35  Score=28.98  Aligned_cols=72  Identities=18%  Similarity=0.182  Sum_probs=55.5

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHH-HHHhhccC--CCHHHHHHHHHHHHHHhcC
Q psy14164        143 LPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       143 ~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~-Ll~LL~~~--~~~~v~~~Al~ALS~l~r~  214 (361)
                      +..|-+=|. +.++.+...|+.+|-.+++|. +.++..+...+.+.. |++++...  .+..|+.+.+..|-.-...
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~  116 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA  116 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence            455555455 478999999999999999996 467888888899987 99999732  3458899888887776543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1xqs_A	280	Crystal Structure Of The Hspbp1 Core Domain Complex		8e-31
1xqr_A	296	Crystal Structure Of The Hspbp1 Core Domain Length		1e-27
1k9d_A	679	The 1.7 A Crystal Structure Of Alpha-D-Glucuronidas		5e-04

>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 280

Iteration: 1
 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 4/240 (1%)
Query: 119 GALDNLSDYICSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 177
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 43  GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 102
Query: 178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVRE E  L +F++ DGFSVL+R +Q 
Sbjct: 103 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 162
Query: 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 297
           + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E    +  +EH+L AL S
Sbjct: 163 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCS 219
Query: 298 LIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
           L+ D P+    CR   L L+  L    +    +E Y +ELE+   +L   F   + +  D
Sbjct: 220 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMD 279

>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Length = 296

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 7/244 (2%)
Query: 119 GALDNLSDYICSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 177
           GAL+ L+D   + D A DF ++ G  +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 59  GALELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 118
Query: 178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVRE E  L +F++ DGFSVL R  Q 
Sbjct: 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQ 178
Query: 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 297
           + +KL +KS FL+  L   + + K  L S G V+Q+  L+  E    +  +EH+L AL S
Sbjct: 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSXGXVQQLVALVRTE---HSPFHEHVLGALCS 235
Query: 298 LIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFD 357
           L+ D P+    CR   L L+  L    +    +E Y +ELE+   +L   F   SP + D
Sbjct: 236 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF--SSPAD-D 292
Query: 358 HQDR 361
             DR
Sbjct: 293 SXDR 296

>pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-Glucuronidase, A Family-67 Glycoside Hydrolase From Bacillus Stearothermophilus T-1 Length = 679

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 128 ICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD 183
             SI+YA+  +++GGLP   PL    DPE+RW   ET   I Q  P    F+++ D
Sbjct: 233 FLSINYASP-IEIGGLPTADPL----DPEVRWWWKETAKRIYQYIPDFGGFVVKAD 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	6e-05

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  166 bits (422), Expect = 3e-49
 Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 94  VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEG 152
           + V ++         E    +    GAL+ L+D   ++D A DF ++ G+  ++   LE 
Sbjct: 34  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93

Query: 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 212
               LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A+SCLV
Sbjct: 94  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153

Query: 213 RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272
           RE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332
           +  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +    +E 
Sbjct: 214 LVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 333 YHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
           Y +ELE+   +L   F        D  DR
Sbjct: 271 YQEELEFCEKLLQTCFSS---PADDSMDR 296

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 36/210 (17%), Positives = 89/210 (42%), Gaps = 7/210 (3%)

Query: 90  NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
           +    + G+EL ++++ L   +Q +    +  L  ++      +     +  G LP L  
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQ 61

Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
           LL   + ++   A   +++I          +I    L  L+  +    N  +  ++L+A+
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120

Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
           S +     E ++  I       L++ + S  E+++ ++ + ++ + +  N+ KQ +   G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 269 MVEQMCVLIDIEDALDTEMNEHLLSALASL 298
            +E++  L   E+    ++ +    AL  L
Sbjct: 181 ALEKLEQLQSHENE---KIQKEAQEALEKL 207

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 31/229 (13%), Positives = 84/229 (36%), Gaps = 9/229 (3%)

Query: 87  DALNSMMVNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYICSIDYANDFLKMGGLP 144
           +A    ++     +  I++T++   D        G L NLS      +      K GG+P
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH---HREGLLAIFKSGGIP 237

Query: 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 204
            L  +L      + + A  T+ +++ +   ++  +     L  ++  +   +N      +
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296

Query: 205 LYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 264
              +  L   N+E     +   G   L+  +++   + ++ +   +  + +  +  K  +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEP 313
           +  G ++    L          + ++ L  L +L   + + + +  L  
Sbjct: 357 VEAGGMQ---ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 402

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 12/205 (5%)

Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
            +Q     C+  L NLSD              G L  L  LL   D  +   AA  ++++
Sbjct: 372 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426

Query: 169 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVR---ENEECLKEFIK 224
             NN  ++  + Q   +  L+ ++    +   +   ++ A+  L     + E        
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 284
             G  V+++ +       +IK+   +             L   G +     L+ +     
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 543

Query: 285 TEMNEHLLSALASLIKDSPEAQSLC 309
            +                       
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEI 568

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 4/173 (2%)

Query: 138 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 197
           L    +P L  LL   D  +  +AA  V  + +        +     ++ ++ ++++ ++
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206

Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
                 +   +  L   + E L    K  G   L+  + S  + ++  +   +  L    
Sbjct: 207 VETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265

Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCR 310
              K  +   G ++    ++ + +  + +        L  L   + E++ +  
Sbjct: 266 EGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 32/227 (14%)

Query: 100 LEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
           L  ++K L    +       +G + NL+             + G +P L  LL  +  + 
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 158 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 197
           + R +                I++  T  L++L   I                   +   
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
             +Q  +   +  L + ++E  +        + L   + S+ E +   +  ++  +  D 
Sbjct: 607 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665

Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
            Q  +  LS+ +   +              NE     L    +  P 
Sbjct: 666 PQDYKKRLSVELTSSLF------RTEPMTWNETGDLGLDIGAQGEPL 706

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 32/215 (14%), Positives = 87/215 (40%), Gaps = 8/215 (3%)

Query: 92  MMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL 149
           ++   G  + + ++ LK  EN   +      L N++    +       ++ G +P+   L
Sbjct: 59  VISTPGV-VARFVEFLKRKENCTLQFESAWVLTNIAS--GNSLQTRIVIQAGAVPIFIEL 115

Query: 150 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 209
           L     +++ +A   + +I  ++   +++++  + L  LL      +  T+   +++A+S
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175

Query: 210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269
            L R      +        +VL   +      ++  +C+ ++ L    N   Q ++  G+
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235

Query: 270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
                 L+++    D ++    L A+ +++     
Sbjct: 236 CR---RLVELLMHNDYKVVSPALRAVGNIVTGDDI 267

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.0 bits (166), Expect = 9e-13
 Identities = 35/191 (18%), Positives = 82/191 (42%), Gaps = 8/191 (4%)

Query: 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 172
             D C  AL  LSD     D     +  G    L  LL  +D ++   A   V +IV  +
Sbjct: 209 LADAC-WALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265

Query: 173 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLL 232
                 I+    L  LL  +      +++ ++ + +S +   N   ++  I  + F  L+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324

Query: 233 RCIQSKKEKLVIKSCFLIACLCT-DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 291
             +Q+ + +   ++ + I    +  + +  + L+ +G ++ +C L+ +    D+++ +  
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM---DSKIVQVA 381

Query: 292 LSALASLIKDS 302
           L+ L ++++  
Sbjct: 382 LNGLENILRLG 392

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 22/176 (12%), Positives = 66/176 (37%), Gaps = 4/176 (2%)

Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQN--NPFSQNFIIQTDFLNLLLTSIEHDSNT 198
                +  ++    PE +  A +    ++    NP     I     +   +  ++   N 
Sbjct: 20  VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79

Query: 199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258
           T+Q +S + ++ +   N    +  I+     + +  + S+ E +  ++ + +  +  D+ 
Sbjct: 80  TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139

Query: 259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPL 314
             +  +L   ++  +  L   ++     M  + + AL++L +         ++ P 
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 41/256 (16%), Positives = 104/256 (40%), Gaps = 20/256 (7%)

Query: 90  NSMMVNVGAELEKIIKTLKENQD---QKDICIGALDNLSDYICSIDYANDFLKMGGLPVL 146
            +  ++   ++   +  L  + D     D C  A+  L+D     +     +K G +P L
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSC-WAISYLTDG--PNERIEMVVKKGVVPQL 279

Query: 147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 206
             LL  ++  +   A   + +IV         +I    L +  + + +   T +Q ++ +
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATW 338

Query: 207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLL 265
            +S +    ++ +++ +       L+  +     K   ++ + I    +    +    L+
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398

Query: 266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFK----LN 321
             G++E +  L+  +   DT++ + +L A++++ +    A+ L   E L++  +    L+
Sbjct: 399 HCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQA---AEKLGETEKLSIMIEECGGLD 452

Query: 322 FIKE--KHAGNEVYHK 335
            I+   +H    VY  
Sbjct: 453 KIEALQRHENESVYKA 468

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 44/297 (14%), Positives = 105/297 (35%), Gaps = 21/297 (7%)

Query: 18  RLEDSQAQPNLAI--EYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAA 75
                   P+L    +     DI + Q     +++D+++        S+ Q      +  
Sbjct: 26  FERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLL 85

Query: 76  SMNEANRGFLLDALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDY 133
           S  E             ++  G  + K +  L   +    +     AL N++    + + 
Sbjct: 86  S-REKQP------PIDNIIRAGL-IPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQ 135

Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
               +  G +P    LL      +  +A   + +I  +    ++ +I+   ++ LL  + 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195

Query: 194 HDSNTTVQVKSL----YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
               +T+    L    + +S L R                 L+R +     +++  SC+ 
Sbjct: 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255

Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
           I+ L    N+  ++++  G+V Q+  L+      +  +    L A+ +++  + E  
Sbjct: 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQT 309

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 30/219 (13%), Positives = 77/219 (35%), Gaps = 9/219 (4%)

Query: 92  MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
           M+V  G  + +++K L           + A+ N+     + +     +  G L V   LL
Sbjct: 269 MVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQTQKVIDAGALAVFPSLL 325

Query: 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210
                 ++  A  T+++I          ++    +  L+  +   ++   Q ++ +A++ 
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITN 384

Query: 211 LVRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269
                  E +   +       L+  + +K  K++      I+ +     ++ +      M
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444

Query: 270 VEQMCVLIDIEDAL---DTEMNEHLLSALASLIKDSPEA 305
           +E+   L  IE      +  + +  L+ +        E 
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 483

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 120 ALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179
           A+ NL +Y       +  L    +P L  LL   D  +  +AA  V  + +        +
Sbjct: 1   AVVNLINYQ-----DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKK 239
                ++ ++ ++++ ++      +   +  L   + E L    K  G   L++ + S  
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPV 114

Query: 240 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299
           + ++  +   +  L       K  +   G ++    ++ + +  + +        L  L 
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILA 171

Query: 300 KDSPEAQSLCR----LEPL 314
             + E++ +       + L
Sbjct: 172 YGNQESKLIILASGGPQAL 190

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 22/241 (9%)

Query: 75  ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDY 133
            S+  +N+  +++A        G  ++ +   L   +Q     C+  L NLSD       
Sbjct: 213 LSVCSSNKPAIVEA--------GG-MQALGLHLTDPSQRLVQNCLWTLRNLSD-----AA 258

Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
                  G L  L  LL   D  +   AA  ++++  NN  ++  + Q   +  L+ ++ 
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 194 HDSNT-TVQVKSLYAVSCLV---RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
              +   +   ++ A+  L    +E E          G  V+++ +       +IK+   
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309
           +             L   G +     L+ +      +                       
Sbjct: 379 LIRNLALCPANHAPLREQGAIP---RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435

Query: 310 R 310
            
Sbjct: 436 V 436

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 93  MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE 151
           +   G  +  ++K L           I  L NL   +            GGL  +  LL 
Sbjct: 97  IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 153

Query: 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
            ++ +      + +  +   N  S+  I+ +     L+  +   +   +   +   +  L
Sbjct: 154 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

Query: 212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
                      ++  G   L   +    ++LV    + +  L     + + +    G++ 
Sbjct: 214 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 269

Query: 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
               L+ +  + D  +       L++L  ++ + +
Sbjct: 270 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 65.8 bits (160), Expect = 5e-12
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 16/238 (6%)

Query: 75  ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYICSIDY 133
           A  +   R ++L           A +E I+                 L NL         
Sbjct: 201 AGDSTDYRDYVLQC--------NA-MEPILGLFNSNKPSLIRTATWTLSNLCRG--KKPQ 249

Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
            +  +    LP L  L+   D E    A   ++ +      +   +I       L+  + 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309

Query: 194 HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253
           H+S T VQ  +L AV  +V  N+   +  I       L   + S KE +  ++C+ I+ +
Sbjct: 310 HES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368

Query: 254 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRL 311
              N +  Q ++   ++  +  L+++    + +  +    A+++      +   + R 
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRY 423

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 86  LDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLP 144
           + A       +  EL ++ + L  ++  ++         +          +  ++ G +P
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVP 133

Query: 145 VLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 203
            L   + E     L+  AA  + +I          ++  D + L +  +    +  V+ +
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQ 192

Query: 204 SLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 263
           +++A+  +  ++ +     ++ +    +L    S K  L+  + + ++ LC         
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 264 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
            +    +  +  LI      DTE       A++ L     E
Sbjct: 253 SVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQE 290

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 23/197 (11%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 92  MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
            +++V    +++++ L  E+   +   + A+ N+     +       +  G LP L+ LL
Sbjct: 294 AVIDVRI-PKRLVELLSHESTLVQTPALRAVGNIV--TGNDLQTQVVINAGVLPALRLLL 350

Query: 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210
                 ++  A  T+++I   N      +I  + +  L+  +E       + ++ +A+S 
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAISN 409

Query: 211 LVR---ENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
                 +  + ++  + +     L   ++    +++  +   +  +       K+     
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARG 467

Query: 268 GMVEQMCVLIDIEDALD 284
             + +    I+    ++
Sbjct: 468 LNINENADFIEKAGGME 484

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 8/159 (5%)

Query: 161 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220
           A     D    +   Q +      L  +   +  D        ++     L RE+   + 
Sbjct: 65  ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124

Query: 221 EFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI 279
             I+      L+  ++  + E L +++ + +  + +  +   +V++    V     L+  
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184

Query: 280 EDALDTEMNEHLLSALASLIKDSPEAQSLCR----LEPL 314
                 E+ E  + AL ++  DS + +        +EP+
Sbjct: 185 GS---VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 32/220 (14%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 90  NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
           +    + G+EL ++ + L  ++  ++         +       +     +  G LP L  
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQ 61

Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
           LL   + ++   A   +++I          +I    L  L+  +    N  +  ++L+A+
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120

Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
           S +     E ++  I       L++ + S  E+++ ++ + ++ + +  N+  Q ++  G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180

Query: 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
            +  +  L+      + ++ +  L AL+++     E +  
Sbjct: 181 ALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQA 217

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 75  ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYICSIDY 133
           AS        ++DA        GA L  +++ L   N+      + AL N++      + 
Sbjct: 124 ASGGNEQIQAVIDA--------GA-LPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 172

Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
               +  G LP L  LL   + ++   A   +++I       +  + +   L  L     
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232

Query: 194 HDSNTTVQVKSLYAVSCLV 212
           H  N  +Q ++  A+  L 
Sbjct: 233 H-ENEKIQKEAQEALEKLQ 250

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 131 IDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189
           I+Y +D  L    +P L  LL   D  +  +AA  V  + +        +     ++ ++
Sbjct: 3   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
            ++++ ++      +   +  L   + E L    K  G   L++ + S  + ++  +   
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309
           +  L       K  +   G ++    ++ + +  + +        L  L   + E++ + 
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 310 R----LEPL 314
                 + L
Sbjct: 179 LASGGPQAL 187

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 12/206 (5%)

Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
            +Q     C+  L NLSD              G L  L  LL   D  +   AA  ++++
Sbjct: 236 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 169 VQNNPFSQNFIIQTDFL-NLLLTSIEHDSNTTVQVKSLYAVSCLV---RENEECLKEFIK 224
             NN  ++  + Q   +  L+ T +       +   ++ A+  L    +E E        
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 284
             G  V+++ +       +IK+   +             L   G +     L+ +     
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 407

Query: 285 TEMNEHLLSALASLIKDSPEAQSLCR 310
            +                        
Sbjct: 408 QDTQRRTSMGGTQQQFVEGVRMEEIV 433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 93  MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE 151
           +   G  +  ++K L           I  L NL   +            GGL  +  LL 
Sbjct: 94  IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 150

Query: 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
            ++ +      + +  +   N  S+  I+ +     L+  +   +   +   +   +  L
Sbjct: 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

Query: 212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
                      ++  G   L   +    ++LV    + +  L     + + +    G++ 
Sbjct: 211 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 266

Query: 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
               L+ +  + D  +       L++L  ++ + +
Sbjct: 267 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 29/219 (13%)

Query: 100 LEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
           L  ++K L    +       +G + NL+             + G +P L  LL  +  + 
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 410

Query: 158 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 197
           + R +                I++  T  L++L   +                   +   
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470

Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
             +Q  +   +  L + ++E  +        + L   + S+ E +   +  ++  +  D 
Sbjct: 471 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529

Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296
            Q  +  LS+ +      L   E     E  +  L   A
Sbjct: 530 PQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGA 565

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 8/199 (4%)

Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
           E+ + +++    L+ +       +     ++ GG+  L  +      + +  A + +A I
Sbjct: 507 ESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563

Query: 169 V--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226
               N   S +     D +  LL  ++ D       +SL A++ L   NE   +  IK  
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623

Query: 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE 286
           G S +   +      L   +   +  L    + +K    +   V+ + +L + ED    E
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE---E 680

Query: 287 MNEHLLSALASLIKDSPEA 305
                  ALA +   S + 
Sbjct: 681 TATACAGALAIITSVSVKC 699

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%)

Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 200
             +  L  L E  D E     A  +A I   +      I+       +L ++  + +  V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253
           Q + +  +  ++   EE  K+  + D   +L    Q   +           CL
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 7e-10
 Identities = 56/366 (15%), Positives = 103/366 (28%), Gaps = 114/366 (31%)

Query: 19  LEDSQAQP-NLAIEYAPNQDIP------ARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNI 71
           L   Q +     +E     +          + RQPS +  +         R R     N 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-----RDRLY---ND 122

Query: 72  NRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICI------G----AL 121
           N+           +    N   V+      K+ + L E +  K++ I      G    AL
Sbjct: 123 NQ-----------VFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 122 DNLSDYICSIDYANDF----LKMGG-------LPVLQPLLEGSDPELRWRAAETVADIVQ 170
           D    Y   +    DF    L +         L +LQ LL   DP    R+     D   
Sbjct: 169 DVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DHSS 221

Query: 171 NNPFSQN--------FIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC--LV--REN-- 215
           N     +         +    + N LL  +  +  N      + + +SC  L+  R    
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKA-WNA-FNLSCKILLTTRFKQV 277

Query: 216 --------------EECLKEFIKRDGFSVLLRCIQSKKEKL----------VIKSCFLIA 251
                         +         +  S+LL+ +  + + L           +    +IA
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIA 334

Query: 252 CLCTDN----NQVKQVLLS-MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP-EA 305
               D     +  K V    +  + +  +     + L+      +   L+     +    
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 306 QSLCRL 311
             L  +
Sbjct: 390 ILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 43/251 (17%), Positives = 88/251 (35%), Gaps = 63/251 (25%)

Query: 167 DIVQNN--PFSQNFIIQ--TDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECL 219
           DI+      F  NF  +   D    +L+  E D    +      +L     L+ + EE +
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 220 KEFIK---RDGFSVLLRCIQSK-KEKLVIKSCFLIAC---LCTDN--------------N 258
           ++F++   R  +  L+  I+++ ++  ++   + I     L  DN               
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 259 QVKQVLLSM---------GM--------VEQMCVLIDIEDALDTEM----------NEHL 291
           +++Q LL +         G+           +C+   ++  +D ++           E +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 292 LSALASLIKD-SPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS--VLTEVF 348
           L  L  L+    P   S       N+K +++ I+ +        K   Y N   VL  V 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQ 254

Query: 349 EEDSPEEFDHQ 359
              +   F+  
Sbjct: 255 NAKAWNAFNLS 265

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 28/237 (11%), Positives = 81/237 (34%), Gaps = 21/237 (8%)

Query: 97  GAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP 155
           G  + K ++ L  +++  + I    + +               ++GG+  L  LL   + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQ 58

Query: 156 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215
            ++  AA  + ++V  +  ++    + + +   ++ +    N  +Q +    +  L   +
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 216 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 259
           E  LKE +  D   VL   +                +    ++   +   +  L + +  
Sbjct: 119 E--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNL 316
            + +    G+++ +   +    A     ++ + + +  L   S    +        L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 23/177 (12%), Positives = 57/177 (32%), Gaps = 12/177 (6%)

Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT 199
           G +  L   L+    +L+   A  + ++  + +  S+  + +   +  L+         +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186

Query: 200 VQVKSLYAVSCLVRENEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 253
                L A+  L     E   +    DG        L    Q+    ++     ++  + 
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 254 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
                N   +Q+L     ++    L+    +    +  +    L +L   +P+ Q  
Sbjct: 247 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 27  NLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEA----PNINRAASMNEANR 82
           NL+     N+          + L   L Y  +  + +  +       N++   + NE +R
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256

Query: 83  GFLLDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMG 141
                    ++      L+ +++ LK  +        G L NLS    +         MG
Sbjct: 257 --------QILRENNC-LQTLLQHLKSHSLTIVSNACGTLWNLS--ARNPKDQEALWDMG 305

Query: 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP 173
            + +L+ L+      +   +A  + +++ N P
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT 199
           G +  L   L+    +L+   A  + ++    +  S+  + +   +  L+         +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 200 VQVKSLYAVSCLVRENEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 253
                L A+  L     E   +    DG        L    Q+    ++     ++  + 
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 254 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
                N   +Q+L     ++    L+    +    +  +    L +L   +P+ Q  
Sbjct: 363 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 25/228 (10%)

Query: 96  VGAE-LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND------------------ 136
           VG + +E +I  L+ ++   +I   ALD L + I + +                      
Sbjct: 57  VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116

Query: 137 FLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH 194
           F+K    + +L  LLE  D  +RW   + +  +++      Q  I+ +      L  +  
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176

Query: 195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF-LI 250
           DS   ++   +  +  L R N    K     + F  LL  I  +      +V++ C  L+
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 251 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298
             L  +NN  +        +++M    ++ D       + + +    L
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.9
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.89
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.89
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.89
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.87
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.85
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.85
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.85
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.84
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.83
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.83
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.82
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.82
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.81
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.79
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.78
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.76
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.75
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.74
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.71
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.66
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.64
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.55
3grl_A	651	General vesicular transport factor P115; vesicle t	99.44
3grl_A	651	General vesicular transport factor P115; vesicle t	99.23
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.99
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.97
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.97
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.94
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.92
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.87
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.66
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.66
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.64
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.58
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.58
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.57
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.57
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.57
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.54
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.47
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.42
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.41
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.34
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.33
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.31
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.3
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.29
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.28
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	98.25
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.24
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.16
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.12
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.11
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.01
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.93
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.81
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.8
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.76
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.58
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.28
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.24
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.23
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.23
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.23
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.91
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.86
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.81
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.75
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.73
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.65
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	96.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.55
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.46
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.2
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.04
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.78
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.68
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.64
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.49
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.47
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.32
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.23
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.09
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.02
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.99
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.94
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.86
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.37
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	94.27
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	94.24
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	93.7
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	93.61
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	93.55
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	93.48
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	93.4
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.35
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	93.11
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	92.83
3pst_A	425	Protein DOA1; protein degradation, CDC48, ubiquiti	92.7
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.68
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	92.43
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	92.38
3gae_A	253	Protein DOA1; UFD3, CDC48, armadillo repeat, nucle	92.19
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	92.0
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.98
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.88
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.58
3l3f_X	362	Protein DOA1, DOA1/UFD3; armadillo-like repeat str	91.2
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.15
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.1
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.4
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	87.65
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.6
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	86.02
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.59
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	84.8
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	84.06
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	83.94
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	83.35
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.26
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	82.92
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.54
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	81.14
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.1

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=1.3e-50  Score=386.16  Aligned_cols=273  Identities=33%  Similarity=0.493  Sum_probs=244.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hh
Q psy14164         82 RGFLLDALNSMMVNVGAELEKIIKTLKEN----------QDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LL  150 (361)
Q Consensus        82 ~~~L~eal~~~~~~~~~~mk~~l~~L~~~----------~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL  150 (361)
                      ..||.++|... +|++++||+++.+|.++          +.+.+.|+.|++.|.++++++||+++|++.||+++|+. +|
T Consensus        13 ~~~~~~~~~~~-~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL   91 (296)
T 1xqr_A           13 LVPRGSHMRGQ-RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL   91 (296)
T ss_dssp             -------CCSC-HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence            57899988753 78999999999999997          33457999999999999999999999999999999999 99


Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV  230 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~  230 (361)
                      .++++.||..|+|+||+++++||.+|+.+++.|++|+|+++|+++++..++++|+|||||++|++++..+.|++.||++.
T Consensus        92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~  171 (296)
T 1xqr_A           92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV  171 (296)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999997667899999999999999999999999999999999


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhc
Q psy14164        231 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCR  310 (361)
Q Consensus       231 Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~  310 (361)
                      |+.+|++++.++|++|+|+|++|+.++++.+..+++.|++++|+.+|.++   +.+++++++.+|.+|+..++..+..|+
T Consensus       172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~~~~~~~~~~~  248 (296)
T 1xqr_A          172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECR  248 (296)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence            99999999999999999999999998899999999999999999999999   999999999999999999998899998


Q ss_pred             cCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCCCcccCC
Q psy14164        311 LEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEEFDH  358 (361)
Q Consensus       311 ~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~~~~~~~  358 (361)
                      .+...|..+|+++++.++.|++|+++|+||.+|+++||+++++++|||
T Consensus       249 ~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~~~~~~~~  296 (296)
T 1xqr_A          249 EPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMDR  296 (296)
T ss_dssp             CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC---------
T ss_pred             ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence            876678899999999999888899999999999999999999999997

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=6.2e-27  Score=238.72  Aligned_cols=244  Identities=14%  Similarity=0.199  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q psy14164         97 GAELEKIIKTLKEN--QDQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP  173 (361)
Q Consensus        97 ~~~mk~~l~~L~~~--~~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~  173 (361)
                      ...+..++..|...  +.+.+.+..|++.|.+++...++ ...++..|+++.|+.+|.+++..++..|+++|++++.+++
T Consensus       246 ~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~  325 (529)
T 3tpo_A          246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  325 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence            44445555554321  24567889999999999976544 4557788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                      ..+..+++.|+++.|+.+|.+ ++..+++.|+|+|+||+.+++.....+++.|+++.|+.+|.+++.++|..|+|+|++|
T Consensus       326 ~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl  404 (529)
T 3tpo_A          326 EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY  404 (529)
T ss_dssp             HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999997 6789999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH---------HHHhhccCcchHHHHHHHH
Q psy14164        254 CTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE---------AQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       254 ~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~---------~~~~~~~~~l~l~~~Le~~  323 (361)
                      +.+ +++....+++.|+|++|+.+|.+.   |++++..++.+|.+|++..+.         .+++|    .++     +.
T Consensus       405 ~~~~~~~~~~~l~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~----ggl-----~~  472 (529)
T 3tpo_A          405 TSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC----GGL-----DK  472 (529)
T ss_dssp             HHHSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT----TCH-----HH
T ss_pred             HcCCCHHHHHHHHHCcCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHC----CcH-----HH
Confidence            875 677889999999999999999999   999999999999999864321         12233    123     56


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHHhcCCCCCc
Q psy14164        324 KEKHAGNEVYHKELEYVNSVLTEVFEEDSPE  354 (361)
Q Consensus       324 ~~~l~~~~e~~~e~~~~~~il~~~f~~~~~~  354 (361)
                      ++.|+.| ++.++|++|..|+++||++++++
T Consensus       473 ie~Lq~~-~n~~i~~~A~~iie~yf~~~~~~  502 (529)
T 3tpo_A          473 IEALQRH-ENESVYKASLNLIEKYFSVEEEE  502 (529)
T ss_dssp             HTGGGGC-SSHHHHHHHHHHHHHHC------
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHCCCcccc
Confidence            7788765 89999999999999999976654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=1.4e-26  Score=235.36  Aligned_cols=245  Identities=14%  Similarity=0.204  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q psy14164         97 GAELEKIIKTLKEN--QDQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP  173 (361)
Q Consensus        97 ~~~mk~~l~~L~~~--~~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~  173 (361)
                      ...++.++..|...  +.+.+.+..|+..|.++++..++ ...+...|+++.|+.+|.+++..++..|+++|++++.+++
T Consensus       227 ~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~  306 (510)
T 3ul1_B          227 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  306 (510)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence            44445555554322  34568889999999999976554 3557788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                      ..+..+++.|+++.|+.+|.+ ++..+++.|+|+|+||+.+++.....+++.|+++.|+.+|.+++.++|+.|+|+|++|
T Consensus       307 ~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl  385 (510)
T 3ul1_B          307 EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY  385 (510)
T ss_dssp             HHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999997 5789999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH---------HHHhhccCcchHHHHHHHH
Q psy14164        254 CTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE---------AQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       254 ~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~---------~~~~~~~~~l~l~~~Le~~  323 (361)
                      +.. +++.+..+++.|++++|+.+|.+.   |++++..++.+|.+|++..++         .+++|    .++     +.
T Consensus       386 ~~~~~~~~~~~L~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~----ggl-----~~  453 (510)
T 3ul1_B          386 TSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC----GGL-----DK  453 (510)
T ss_dssp             HHHCCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT----THH-----HH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHc----CcH-----HH
Confidence            975 677889999999999999999999   999999999999999874421         12222    122     46


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHHhcCCCCCcc
Q psy14164        324 KEKHAGNEVYHKELEYVNSVLTEVFEEDSPEE  355 (361)
Q Consensus       324 ~~~l~~~~e~~~e~~~~~~il~~~f~~~~~~~  355 (361)
                      ++.|+.| ++.++|+++..|+++||+++++++
T Consensus       454 ie~Lq~~-~n~~i~~~A~~iie~yf~~~~~~~  484 (510)
T 3ul1_B          454 IEALQRH-ENESVYKASLNLIEKYFSVEEEED  484 (510)
T ss_dssp             HHHGGGC-SSHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHCCCccccc
Confidence            7788765 789999999999999999776543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=9.5e-24  Score=213.87  Aligned_cols=241  Identities=16%  Similarity=0.216  Sum_probs=201.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+.+..|+..|.+++...+.. ..+...|+++.|+.+|.++++.++..|+++|++++.+++..++.+++.|++|.|+.
T Consensus       256 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  335 (528)
T 4b8j_A          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS  335 (528)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH
Confidence            34678899999999998765543 56788999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCc
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGM  269 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~  269 (361)
                      +|.+..+..+++.|+|+|++++.+++.....+++.|+++.|+.+|.+++.+++..|+|+|++|+.. +++....+++.|+
T Consensus       336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  415 (528)
T 4b8j_A          336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC  415 (528)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence            999743789999999999999999988888999999999999999999999999999999999987 6889999999999


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHHH
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSVL  344 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~il  344 (361)
                      ++.|+.+|..+   +.+++..++.+|.+|+...+.....+..+...+...++     +.+..++.| ++.++++++..|+
T Consensus       416 i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~v~~~a~~il  491 (528)
T 4b8j_A          416 IKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH-DNNEIYEKAVKIL  491 (528)
T ss_dssp             HHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC-CCHHHHHHHHHHH
Confidence            99999999998   99999999999999998765433222111112233333     345566644 7889999999999


Q ss_pred             HHhcCCCCCccc
Q psy14164        345 TEVFEEDSPEEF  356 (361)
Q Consensus       345 ~~~f~~~~~~~~  356 (361)
                      ++||+.++++++
T Consensus       492 ~~~~~~e~~~~~  503 (528)
T 4b8j_A          492 EAYWMDEEDDTM  503 (528)
T ss_dssp             HHHCC-------
T ss_pred             HHHCCCcccccc
Confidence            999997665543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=2.7e-23  Score=188.70  Aligned_cols=244  Identities=17%  Similarity=0.253  Sum_probs=206.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc-cHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id-na~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.+.  +.+.+..|+..|..++...+ +...+.+.|+++.|+.+|.+++..+|..|+++|++++.+++..+..
T Consensus         4 i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            4 VEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            45566666653  36889999999999987654 7888999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++.|+++.|+.+|.+ .+..++..|+++|++++.+++.....+.+.|+++.|+++|.+++..++..|+++|.+|+...+
T Consensus        82 ~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999996 678999999999999999899999999999999999999999999999999999999999888


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHH
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELE  338 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~  338 (361)
                      ..+..+.+.|+++.|+.+|.++   +..++..++.+|.+++..++.........+     .+....+-++.  ...+..+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-----~i~~L~~ll~~--~~~~v~~  230 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPTSAIKAIVDAG-----GVEVLQKLLTS--TDSEVQK  230 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHTT-----HHHHHHHGGGC--SCHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-----CHHHHHHHHCC--CcHHHHH
Confidence            8889999999999999999988   999999999999999987776544433322     22233333332  3346777


Q ss_pred             HHHHHHHHhcCCCCCccc
Q psy14164        339 YVNSVLTEVFEEDSPEEF  356 (361)
Q Consensus       339 ~~~~il~~~f~~~~~~~~  356 (361)
                      .+..+|.++.........
T Consensus       231 ~a~~~L~~l~~~~~~~~~  248 (252)
T 4hxt_A          231 EAQRALENIKSGGWLEHH  248 (252)
T ss_dssp             HHHHHHHHHHHTCBCCC-
T ss_pred             HHHHHHHHHHcCCCcccc
Confidence            888888877765554433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=1e-23  Score=187.77  Aligned_cols=185  Identities=18%  Similarity=0.285  Sum_probs=174.0

Q ss_pred             CCHHHHHHHHHHHHHhh-cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lv-e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+.+..|+..|..+. .+.++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..++.+++.|++|.|+.
T Consensus        24 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  103 (210)
T 4db6_A           24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ  103 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH
Confidence            45688899999999998 45667788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      +|.+ .+..++..|+|+|++++.+++.....+++.|+++.|+++|++++.+++..|+++|.+|+..++..+..+.+.|++
T Consensus       104 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i  182 (210)
T 4db6_A          104 LLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL  182 (210)
T ss_dssp             HTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence            9997 578999999999999999999888899999999999999999999999999999999999888999999999999


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      +.|+.+|.++   +..+++.|+.+|.+|+.
T Consensus       183 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          183 EKLEQLQSHE---NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHGGGCS---CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHhc
Confidence            9999999988   99999999999999874

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1.8e-22  Score=198.79  Aligned_cols=238  Identities=14%  Similarity=0.186  Sum_probs=197.9

Q ss_pred             CHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +.+.+..|++.|.+++... ++...+...|+++.|+.+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+.+
T Consensus       205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (450)
T 2jdq_A          205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL  284 (450)
T ss_dssp             CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence            4577888999999998754 456678889999999999999999999999999999999999988889999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMV  270 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i  270 (361)
                      |.+ ++..+|..|+|+|++++.+++...+.+++.|+++.|+.+|.+++.++|..|+|+|++|+.. .++....+++.|++
T Consensus       285 l~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i  363 (450)
T 2jdq_A          285 LSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI  363 (450)
T ss_dssp             TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence            997 5789999999999999999998888999999999999999999999999999999999976 67788888899999


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHHHH
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSVLT  345 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~il~  345 (361)
                      +.|+.+|..+   +.++++.++.+|.+++..++............+...+.     +.+..+..+ ++.++++.+..+++
T Consensus       364 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~  439 (450)
T 2jdq_A          364 KPLCDLLTVM---DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH-ENQEIYQKAFDLIE  439 (450)
T ss_dssp             HHHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            9999999988   99999999999999998665422110000012233332     335556655 56688999999999


Q ss_pred             HhcCCCCCcc
Q psy14164        346 EVFEEDSPEE  355 (361)
Q Consensus       346 ~~f~~~~~~~  355 (361)
                      +||+++++++
T Consensus       440 ~~~~~~~~~~  449 (450)
T 2jdq_A          440 HYFGTEDEDS  449 (450)
T ss_dssp             HHHCCC----
T ss_pred             HHCCcccccC
Confidence            9998776553

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=1.4e-22  Score=185.24  Aligned_cols=234  Identities=15%  Similarity=0.255  Sum_probs=192.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhh-cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164        102 KIIKTLKENQDQKDICIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  180 (361)
Q Consensus       102 ~~l~~L~~~~~~~~~~~~Al~~L~~lv-e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~  180 (361)
                      ..+..|.+  .+.+.+..|+..|..++ .+.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..++
T Consensus        16 ~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           16 QMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33444544  23467788888885543 3445667789999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        181 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                      +.|++|.|+.+|.+ ++..++..|+|+|++++.+.+.....+.+.|+++.|+.+|++++..++..|+|+|.+|+...+..
T Consensus        94 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           94 DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            99999999999997 57899999999999999988777688999999999999999999999999999999999988888


Q ss_pred             HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHH
Q psy14164        261 KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYV  340 (361)
Q Consensus       261 ~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~  340 (361)
                      +..+.+.|+++.|+.+|.++   +..+++.++.+|.+++..++.........+     .+....+-++ + ...+..+.+
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-----~i~~L~~ll~-~-~~~~v~~~A  242 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEAG-----ALEKLEQLQS-H-ENEKIQKEA  242 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-----HHHHHHTTTT-C-SSSHHHHTH
T ss_pred             HHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-----cHHHHHHHhC-C-CCHHHHHHH
Confidence            99999999999999999998   999999999999999987775544332221     2222233332 2 344667777


Q ss_pred             HHHHHHhc
Q psy14164        341 NSVLTEVF  348 (361)
Q Consensus       341 ~~il~~~f  348 (361)
                      ..+|.+++
T Consensus       243 ~~~L~~l~  250 (252)
T 4db8_A          243 QEALEKLQ  250 (252)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHh
Confidence            77777665

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=8.7e-22  Score=175.22  Aligned_cols=200  Identities=15%  Similarity=0.232  Sum_probs=170.5

Q ss_pred             HHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        138 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       138 ~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ..-|+.++|+.+|+++++.+|..|+++|++++.+++..+..+++.|++|.|+++|.+ .+..++..|+|+|++++.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence            345789999999999999999999999999999999999999999999999999997 5789999999999999999999


Q ss_pred             hHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        218 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       218 ~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                      ....+++.|+++.|+.+|++++..++..|+|+|.+|+..++..+..+++.|+++.|+.+|.++   +..+++.++++|.+
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~  164 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSN  164 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888889999999999999999998   99999999999999


Q ss_pred             HHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhc
Q psy14164        298 LIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF  348 (361)
Q Consensus       298 L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f  348 (361)
                      ++..++.........+     .++...+-+. + ...+..+.+..+|.++-
T Consensus       165 l~~~~~~~~~~~~~~g-----~i~~L~~ll~-~-~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          165 IASGGNEQKQAVKEAG-----ALEKLEQLQS-H-ENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHTSCHHHHHHHHHTT-----HHHHHHHGGG-C-SCHHHHHHHHHHHHHHC
T ss_pred             HHcCCcHHHHHHHHCC-----CHHHHHHHHh-C-CCHHHHHHHHHHHHHHh
Confidence            9998765544332222     1222222332 2 45567778888887664

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=1.1e-21  Score=178.09  Aligned_cols=198  Identities=19%  Similarity=0.296  Sum_probs=181.9

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.+  .+.+.+..|+..|..++.. .++...+.+.|+++.|+.+|.++++.+|..|+++|++++..++..+..
T Consensus        46 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  123 (252)
T 4hxt_A           46 VEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA  123 (252)
T ss_dssp             HHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4445555554  3468899999999999987 677888999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++.|+++.|++++.+ .+..++..|+++|++++.+++.....+++.|+++.|+.+|.+++..++..|+++|.+|+..++
T Consensus       124 ~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  202 (252)
T 4hxt_A          124 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT  202 (252)
T ss_dssp             HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred             HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999996 578999999999999999988888899999999999999999999999999999999999888


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      ..+..+.+.|+++.|+.++.++   +..+++.|+++|.+|....+
T Consensus       203 ~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          203 SAIKAIVDAGGVEVLQKLLTST---DSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC---cHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999988   99999999999999998664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=1.2e-21  Score=198.96  Aligned_cols=236  Identities=16%  Similarity=0.191  Sum_probs=198.0

Q ss_pred             CHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +.+.+..|+..|.+++... +....+...|+++.|+.+|.+++..+|..|+++|++++.+++...+.+++.|++|.|+.+
T Consensus       270 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  349 (530)
T 1wa5_B          270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL  349 (530)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH
Confidence            3567888999999998654 345677888999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-Cc--hHHHHHHhCC
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NN--QVKQVLLSMG  268 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~--~~~~~l~~~g  268 (361)
                      |.+ .+..++..|+|+|++++.+++.....+++.|+++.|+.+|.+++.++|..|+|+|.+|+.. .+  +....+++.|
T Consensus       350 L~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~  428 (530)
T 1wa5_B          350 LSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG  428 (530)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence            997 4789999999999999999988888899999999999999999999999999999999985 44  7888999999


Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh-hccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHH
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL-CRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNS  342 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~-~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~  342 (361)
                      +++.|+.+|...   +..+++.++.+|.+++..++..... +.... .+...+.     +.+..++.+ .+.++++++..
T Consensus       429 ~l~~L~~ll~~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~L~~L~~~-~~~~v~~~a~~  503 (530)
T 1wa5_B          429 CIKPLCDLLEIA---DNRIIEVTLDALENILKMGEADKEARGLNIN-ENADFIEKAGGMEKIFNCQQN-ENDKIYEKAYK  503 (530)
T ss_dssp             CHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-HHHHHHHHTTHHHHHHGGGGC-SCHHHHHHHHH
T ss_pred             CHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhhhhhhccccccc-HHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHH
Confidence            999999999988   9999999999999999876543211 10000 1122222     345566644 67889999999


Q ss_pred             HHHHhcCCCCCc
Q psy14164        343 VLTEVFEEDSPE  354 (361)
Q Consensus       343 il~~~f~~~~~~  354 (361)
                      ++++||..++++
T Consensus       504 il~~~~~~~~~~  515 (530)
T 1wa5_B          504 IIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHSSSCC--
T ss_pred             HHHHHCCccccc
Confidence            999999876654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.90  E-value=4.7e-22  Score=181.67  Aligned_cols=195  Identities=19%  Similarity=0.298  Sum_probs=177.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.+.  +.+.+..|+..|..++. +.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+.+..+..
T Consensus        56 i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  133 (252)
T 4db8_A           56 LPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA  133 (252)
T ss_dssp             HHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence            34455555553  36889999999999987 5678888999999999999999999999999999999999998887688


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++.|++|.|+++|.+ .+..++..|+|+|++++.+++.....+++.|+++.|+++|.+++..++..|+++|.+|+..++
T Consensus       134 ~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  212 (252)
T 4db8_A          134 VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  212 (252)
T ss_dssp             HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence            9999999999999987 578999999999999999998888899999999999999999999999999999999998888


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      ..+..+++.|+++.|+.+|.++   +.++++.|+++|.+|+.
T Consensus       213 ~~~~~~~~~g~i~~L~~ll~~~---~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          213 EQKQAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHHTTHHHHHHTTTTCS---SSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHCCcHHHHHHHhCCC---CHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998   99999999999998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.89  E-value=7e-22  Score=192.36  Aligned_cols=193  Identities=16%  Similarity=0.169  Sum_probs=173.6

Q ss_pred             CCHHHHHHHHHHHHHhhcC--cccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHH
Q psy14164        112 DQKDICIGALDNLSDYICS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNL  187 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~--idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~  187 (361)
                      .+.+.+..|...|..+...  .+++..+.+.||+|+|+++ +++++..++..|+++|.|++..++..+..+. ..|++|.
T Consensus       139 ~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~  218 (354)
T 3nmw_A          139 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF  218 (354)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHH
Confidence            4568889999999999863  4577889999999999997 5778999999999999999987877777777 7899999


Q ss_pred             HHHhhccCCCH---HHHHHHHHHHHHHhc---CChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH
Q psy14164        188 LLTSIEHDSNT---TVQVKSLYAVSCLVR---ENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  261 (361)
Q Consensus       188 Ll~LL~~~~~~---~v~~~Al~ALS~l~r---~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~  261 (361)
                      |+++|.+..+.   .+++.|+|+|+|++.   +++...+.+++.|+++.|+.+|++++..+++.|+|+|++|+..+++.+
T Consensus       219 Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  298 (354)
T 3nmw_A          219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ  298 (354)
T ss_dssp             HHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH
Confidence            99999865432   599999999999997   788899999999999999999999999999999999999998889999


Q ss_pred             HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       262 ~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      ..+++.|+|++|+.+|.++   +..+++.|+.+|.+|+...|..++
T Consensus       299 ~~i~~~G~i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          299 EALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHTTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999999999999999998   999999999999999998876553

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.89  E-value=2.9e-21  Score=188.01  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhhcCcc-cHHHHHHCCC-HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHH
Q psy14164        114 KDICIGALDNLSDYICSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~id-na~~~~~~Gg-~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+..|...|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.++..+++.|++|+|++
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4678899999999986654 5555666777 99999999999999999999999999986 7889999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhCcHHHHHHhhccCCH----HHHHHHHHHHHHHhc---CCchHHH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQ  262 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~-~~ggi~~Lv~lL~s~~~----~v~~kA~~ll~~L~~---~~~~~~~  262 (361)
                      +|.+..+..+++.|+++|.||+.+++.....+. ..|+++.|+++|.+++.    .++..|+|+|++|+.   .+++.++
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            865445779999999999999997777777777 78999999999987644    699999999999997   6788999


Q ss_pred             HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHH
Q psy14164        263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS  342 (361)
Q Consensus       263 ~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~  342 (361)
                      .+++.|+++.|+.+|.++   +..+++.|+++|.+|+..+++......+.+ .    +.-..+-++.  ......+.+..
T Consensus       258 ~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G-~----i~~Lv~LL~s--~~~~i~~~A~~  327 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDMG-A----VSMLKNLIHS--KHKMIAMGSAA  327 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHHTT-H----HHHHHTTTTC--SSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCC---ChHHHHHHHHHHHHHhCCCHHHHHHHHHCC-C----HHHHHHHHhC--CCHHHHHHHHH
Confidence            999999999999999998   999999999999999977765443332222 1    2222223322  23455666666


Q ss_pred             HHHHhcCC
Q psy14164        343 VLTEVFEE  350 (361)
Q Consensus       343 il~~~f~~  350 (361)
                      .|.++...
T Consensus       328 aL~nL~~~  335 (354)
T 3nmw_A          328 ALRNLMAN  335 (354)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            66666654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=197.05  Aligned_cols=192  Identities=16%  Similarity=0.170  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHHhhcC--cccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHH
Q psy14164        112 DQKDICIGALDNLSDYICS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNL  187 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~--idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~  187 (361)
                      .+.+.+..|+..|.++...  .++...+.+.||+++|+.+ +.+++..++..|+.+|+|++..++..+..+. ..|++|.
T Consensus       255 ~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~  334 (458)
T 3nmz_A          255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF  334 (458)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHH
Confidence            4567888999999998763  4577888999999999997 5678899999999999999997777777777 7999999


Q ss_pred             HHHhhccCCCH---HHHHHHHHHHHHHhc---CChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH
Q psy14164        188 LLTSIEHDSNT---TVQVKSLYAVSCLVR---ENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  261 (361)
Q Consensus       188 Ll~LL~~~~~~---~v~~~Al~ALS~l~r---~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~  261 (361)
                      |+++|.+..+.   .+++.|+|+|+||+.   +++...+.+++.|+++.|+.+|.+++..+++.|+|+|++|+..+++.+
T Consensus       335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~  414 (458)
T 3nmz_A          335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ  414 (458)
T ss_dssp             HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHH
Confidence            99999875432   599999999999997   788899999999999999999999999999999999999998889999


Q ss_pred             HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       262 ~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      ..+++.|+|++|+.+|.+.   +..+++.|+.+|.+|+..+|..+
T Consensus       415 ~~i~~~G~I~~Lv~LL~s~---~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          415 EALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHHTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHhhh
Confidence            9999999999999999998   99999999999999999887544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.87  E-value=3.3e-20  Score=186.18  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHhhcCcc-cHHHHHHCCC-HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHH
Q psy14164        114 KDICIGALDNLSDYICSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~id-na~~~~~~Gg-~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~  190 (361)
                      ...+..|...|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.++..+++.|++|+|++
T Consensus       214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~  293 (458)
T 3nmz_A          214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  293 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence            3568889999999987655 4445656777 99999999999999999999999999986 7889999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhCcHHHHHHhhccCCH----HHHHHHHHHHHHHhc---CCchHHH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQ  262 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~-~~ggi~~Lv~lL~s~~~----~v~~kA~~ll~~L~~---~~~~~~~  262 (361)
                      +|.+..+..+++.|+.+|.||+.+++.....+. ..||++.|+++|.+++.    .++..|+|+|++|+.   .+++.++
T Consensus       294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  373 (458)
T 3nmz_A          294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  373 (458)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            865445789999999999999987767777777 79999999999987643    599999999999997   6889999


Q ss_pred             HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHH
Q psy14164        263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS  342 (361)
Q Consensus       263 ~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~  342 (361)
                      .+++.|+++.|+.+|.++   +..+++.|+++|.+|+..+++......+.+ .    +.-...-+..  ......+.+..
T Consensus       374 ~i~~~G~i~~Lv~LL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G-~----I~~Lv~LL~s--~~~~v~~~Aa~  443 (458)
T 3nmz_A          374 ILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDMG-A----VSMLKNLIHS--KHKMIAMGSAA  443 (458)
T ss_dssp             HHHHTTHHHHHHHHSSCS---CHHHHHHHHHHHHHHHSSCHHHHHHHHHHT-H----HHHHHTTTTC--SSHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHcCC---ChHHHHHHHHHHHHHHcCCHHHHHHHHHCC-C----HHHHHHHHhC--CCHHHHHHHHH
Confidence            999999999999999998   999999999999999977765443322211 1    2222223322  23455666766


Q ss_pred             HHHHhcCC
Q psy14164        343 VLTEVFEE  350 (361)
Q Consensus       343 il~~~f~~  350 (361)
                      .|.++...
T Consensus       444 AL~nL~~~  451 (458)
T 3nmz_A          444 ALRNLMAN  451 (458)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHcC
Confidence            67666543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.86  E-value=4e-20  Score=185.45  Aligned_cols=241  Identities=12%  Similarity=0.172  Sum_probs=181.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh--------cCC--------CHHHHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL--------EGS--------DPELRWRAAET  164 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL--------~s~--------~~~vr~~Aa~~  164 (361)
                      ...+..|.. +.+.+.+..|.+.|..+....++...+.. |++|+|+.+|        .++        +..++..|+|+
T Consensus        89 ~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~a  166 (457)
T 1xm9_A           89 REAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC  166 (457)
T ss_dssp             HHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHH
T ss_pred             HHHHHHHhh-CCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHH
Confidence            344455542 34568888999999999888677777889 9999999999        333        46677799999


Q ss_pred             HHHHhhcCHHHHHHHHhc-ChHHHHHHhhccC------------------------------------------------
Q psy14164        165 VADIVQNNPFSQNFIIQT-DFLNLLLTSIEHD------------------------------------------------  195 (361)
Q Consensus       165 Lg~iaqnn~~~q~~v~~~-g~l~~Ll~LL~~~------------------------------------------------  195 (361)
                      |+|++.+ +.+++.+.+. |++|+|+.+|.+.                                                
T Consensus       167 L~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (457)
T 1xm9_A          167 LRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS  245 (457)
T ss_dssp             HHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------
T ss_pred             HHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccccc
Confidence            9999987 8899999998 9999999888630                                                


Q ss_pred             --------------------------------------------------CCHHHHHHHHHHHHHHhcCChhh---H-HH
Q psy14164        196 --------------------------------------------------SNTTVQVKSLYAVSCLVRENEEC---L-KE  221 (361)
Q Consensus       196 --------------------------------------------------~~~~v~~~Al~ALS~l~r~~~~~---~-~~  221 (361)
                                                                        .++.++..|+|||+|+++++...   . +.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~  325 (457)
T 1xm9_A          246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL  325 (457)
T ss_dssp             --------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHH
T ss_pred             ccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHH
Confidence                                                              12456777899999999986432   2 33


Q ss_pred             HH-hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCC---CChhHHHHHHHHHHH
Q psy14164        222 FI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA---LDTEMNEHLLSALAS  297 (361)
Q Consensus       222 f~-~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~---~d~~~~e~al~aL~~  297 (361)
                      ++ +.||++.|+++|.+++.+++++|+|+|++|+.+ +..+ .++..|++++|+++|..++.   .+.++...++.+|.+
T Consensus       326 ~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~n  403 (457)
T 1xm9_A          326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN  403 (457)
T ss_dssp             HHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHH-HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHH
Confidence            44 689999999999999999999999999999874 4444 45556899999999998610   123688899999999


Q ss_pred             HHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164        298 LIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDS  352 (361)
Q Consensus       298 L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~  352 (361)
                      ++..+++......+. .++     ..+..+..++.+.++|+.+..+|.+||...+
T Consensus       404 i~~~~~~~~~~i~~~-g~l-----~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          404 LMASQPQLAKQYFSS-SML-----NNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHTTCTHHHHHHCCH-HHH-----HHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHhcCHHHHHHHHHc-CCH-----HHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            998877644433222 133     2333444342267899999999999997654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=1.9e-20  Score=171.88  Aligned_cols=198  Identities=10%  Similarity=0.097  Sum_probs=165.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhh-cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  179 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lv-e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v  179 (361)
                      ...+..|.+.+...+.+..|...|..++ .+.++...++..||+|+|+++|.++++++|..|+|+|.|++.+++.++..+
T Consensus        11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4455556654444467778888888887 456678889999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc----------------cCCHHHH
Q psy14164        180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ----------------SKKEKLV  243 (361)
Q Consensus       180 ~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~----------------s~~~~v~  243 (361)
                      .+.|++|+|+++|.+..+..+++.|+.+|.+|+. ++.....+.+ +|++.|++++.                +.+..++
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence            9999999999999854578999999999999976 4555566664 68999988663                1367999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC---CCCChhHHHHHHHHHHHHHh
Q psy14164        244 IKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       244 ~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~~  300 (361)
                      ..|+.+|.||+..+++.|+.+.+. |+|+.|+.+|+..   ...+.+.+|+++.+|.+|.-
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            999999999999888999999986 6789999999863   22367899999999999874

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.85  E-value=1.7e-19  Score=183.79  Aligned_cols=200  Identities=16%  Similarity=0.250  Sum_probs=174.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164        102 KIIKTLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  180 (361)
Q Consensus       102 ~~l~~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~  180 (361)
                      ..+..|.. +++.+.+..|++.|..++.. .++...++..|++|+|+.+|.+++..++..|+|+|+|++.+++.++..++
T Consensus       123 ~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~  201 (529)
T 3tpo_A          123 KFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVI  201 (529)
T ss_dssp             HHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34444433 34567888899999998754 45667899999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHhhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        181 QTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~----~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      +.|++++|+.+|....    ...+.+.++|+|++++++..+........++++.|+.+|.+++..++..|+|+|++|+..
T Consensus       202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~  281 (529)
T 3tpo_A          202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  281 (529)
T ss_dssp             HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence            9999999999998532    246788999999999998766555555578999999999999999999999999999998


Q ss_pred             CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        257 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       257 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      .+.....+++.|+++.|+.+|.++   +..++..++.+|.+|+..++..
T Consensus       282 ~~~~~~~v~~~g~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          282 PNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hhhhHHHHHhccchHHHHHHhcCC---ChhHHHHHHHHHHHHHccchHH
Confidence            888888999999999999999998   9999999999999999887653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.85  E-value=1.5e-19  Score=183.44  Aligned_cols=192  Identities=15%  Similarity=0.250  Sum_probs=170.7

Q ss_pred             CCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        111 QDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       111 ~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      ++..+.+..|++.|..+.. +.++...+++.|++|.|+.+|.+++..+|..|+|+|+|++.+++.+++.+++.|++++|+
T Consensus       112 ~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll  191 (510)
T 3ul1_B          112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL  191 (510)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence            3456778899999999864 556778899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164        190 TSIEHDS----NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL  265 (361)
Q Consensus       190 ~LL~~~~----~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~  265 (361)
                      .+|....    ...+++.++|+|++++++..+........++++.|+++|.+++..++..|+|+|++|+...++....++
T Consensus       192 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~  271 (510)
T 3ul1_B          192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV  271 (510)
T ss_dssp             HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence            9998532    246788999999999998765544445568899999999999999999999999999998888888899


Q ss_pred             hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       266 ~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      +.|+++.|+.+|.++   +..++..++++|.+|+..++..
T Consensus       272 ~~g~i~~Lv~lL~~~---~~~v~~~al~aL~nl~~~~~~~  308 (510)
T 3ul1_B          272 KKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQ  308 (510)
T ss_dssp             TTTCHHHHHHHHTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hcccchhhhhhhcCC---ChhhhhHHHHHHHHhhcCCHHH
Confidence            999999999999998   9999999999999999887643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.85  E-value=3.8e-20  Score=185.61  Aligned_cols=195  Identities=13%  Similarity=0.176  Sum_probs=166.6

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.++  +.+.+..|+..|..++..-++ ...+.+.||+|+|+.+|+++++.++..|+|+|.|++.+|+.++..
T Consensus         4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34556667664  457889999999999865555 458999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh--------cc--------CCHHH
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI--------QS--------KKEKL  242 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL--------~s--------~~~~v  242 (361)
                      +++.|++|+|+++|....+..++..|+|+|+||+.+ +.....+++ ||++.|+++|        .+        .+..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999998446789999999999999997 667777888 9999999999        33        24677


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC---CCCChhHHHHHHHHHHHHH
Q psy14164        243 VIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI  299 (361)
Q Consensus       243 ~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~  299 (361)
                      ++.|+|+|++|+.. ++.+..+++. |+++.|+.+|.+.   ...+..++++++.+|.++.
T Consensus       160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            77999999999986 8899999998 9999999999861   0016678999999999886

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.84  E-value=8.8e-19  Score=177.34  Aligned_cols=203  Identities=15%  Similarity=0.278  Sum_probs=177.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.+. ++.+.+..|+..|..+... .++...++..|++++|+.+|.++++.+|..|+|+|++++.+++.++..
T Consensus       119 v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  197 (528)
T 4b8j_A          119 VPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL  197 (528)
T ss_dssp             HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            34444555442 3367889999999999875 567778899999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      +++.|++++|+.+|..+.+..++..|+|+|++++++.+... .....++++.|+.+|.+++..++..|+|+|++|+...+
T Consensus       198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (528)
T 4b8j_A          198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN  276 (528)
T ss_dssp             HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999655788999999999999999864433 33458999999999999999999999999999998877


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      ...+.+++.|+++.|+.+|.++   +..+++.|+++|.+|+..++....
T Consensus       277 ~~~~~~~~~g~v~~Lv~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~  322 (528)
T 4b8j_A          277 DKIQAVIEAGVCPRLVELLLHP---SPSVLIPALRTVGNIVTGDDAQTQ  322 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHHcCC---ChhHHHHHHHHHHHHHcCCHHHHH
Confidence            7788999999999999999998   899999999999999998775443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.83  E-value=1.3e-19  Score=192.26  Aligned_cols=188  Identities=13%  Similarity=0.145  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh-cChHHHHHH
Q psy14164        113 QKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLT  190 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g~l~~Ll~  190 (361)
                      +...+..|+..|.++.... ++...+++.||++.|+.||.|+++.||..|+++|+|++.+. ..+..+++ .|+++.|+.
T Consensus       594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~  672 (810)
T 3now_A          594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLAL  672 (810)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHH
Confidence            3445668999999998764 56778999999999999999999999999999999999865 46666765 799999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  269 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~-~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~  269 (361)
                      |+.+ .+..+|+.|+||||+|+.+++...+.+++ .||++.|+++|.+++.++|..|+|+|+||+.++++....+++.|+
T Consensus       673 LL~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~  751 (810)
T 3now_A          673 LCED-EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDI  751 (810)
T ss_dssp             GGGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTH
T ss_pred             HhcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            9997 57899999999999999988888899998 899999999999999999999999999999988889999999999


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +++|+.+|+.....+.++.+.|+.+|.+++...
T Consensus       752 i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          752 MELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            999999997642236899999999999998643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.83  E-value=3.5e-19  Score=189.00  Aligned_cols=226  Identities=12%  Similarity=0.071  Sum_probs=181.4

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHH---HCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFL---KMGGLPVLQPLLEGS-DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~---~~Gg~~~Lv~LL~s~-~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L  188 (361)
                      +...+..|...|..++...+....|.   ..|++|+|+.||.++ +...+..|+|+|+|++.+++..++.+++.|++|.|
T Consensus       549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L  628 (810)
T 3now_A          549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI  628 (810)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence            45678889999999876555444332   257999999999876 44556789999999999999999999999999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh-
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS-  266 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~-~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~-  266 (361)
                      +.+|.+ .++.+++.|+++|+||+.+ +..+..|++ .|+++.|+.++.+++..+|+.|+|+|++|+.+++...+.+++ 
T Consensus       629 v~LL~s-~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~  706 (810)
T 3now_A          629 EYYLME-DHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI  706 (810)
T ss_dssp             HHHHHS-CCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred             HHHHcC-CCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999997 4678999999999999985 557778885 789999999999999999999999999999877888889998 


Q ss_pred             CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhh-cCh-hhhHHHHHHHHHHH
Q psy14164        267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH-AGN-EVYHKELEYVNSVL  344 (361)
Q Consensus       267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l-~~~-~e~~~e~~~~~~il  344 (361)
                      .|++++|+.+|.++   +.+++..|+++|.+++..+++........+ .+     ..+..+ +.+ ....++++.+...|
T Consensus       707 ~g~I~~Lv~LL~s~---d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G-~i-----~~L~~LL~~~d~~~~~i~e~Al~aL  777 (810)
T 3now_A          707 ASWLDILHTLIANP---SPAVQHRGIVIILNMINAGEEIAKKLFETD-IM-----ELLSGLGQLPDDTRAKAREVATQCL  777 (810)
T ss_dssp             TTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHTST-HH-----HHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CH-----HHHHHHHhCcccCcHHHHHHHHHHH
Confidence            89999999999998   999999999999999987765444333322 22     222233 222 14567777777777


Q ss_pred             HHhcC
Q psy14164        345 TEVFE  349 (361)
Q Consensus       345 ~~~f~  349 (361)
                      +....
T Consensus       778 ~~ll~  782 (810)
T 3now_A          778 AAAER  782 (810)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.82  E-value=3.4e-18  Score=168.05  Aligned_cols=203  Identities=14%  Similarity=0.250  Sum_probs=175.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      +...+..|.+ .++.+.+..|+..|..++.. .++...++..|+++.|+.+|+++++.+|..|+++|++++.+++.++..
T Consensus        66 i~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~  144 (450)
T 2jdq_A           66 VARFVEFLKR-KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY  144 (450)
T ss_dssp             HHHHHHHHTC-TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            4444555554 23567889999999998863 456677888999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      +++.|+++.|++++.++.+..++..|+|+|++++++. +.....++ .++++.|+.+|.+++..++..|+|++.+|+...
T Consensus       145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~  223 (450)
T 2jdq_A          145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGP  223 (450)
T ss_dssp             HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence            9999999999999996567899999999999999876 33322333 789999999999999999999999999999887


Q ss_pred             chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      +..+..+.+.|+++.|+.+|.++   +..+++.++++|.+++..++...+
T Consensus       224 ~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~  270 (450)
T 2jdq_A          224 NDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRAVGNIVTGDDIQTQ  270 (450)
T ss_dssp             HHHHHHHHHTTTHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHCCC---chhHHHHHHHHHHHHhhCChHHHH
Confidence            78888899999999999999988   999999999999999988765433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.82  E-value=3.8e-18  Score=173.05  Aligned_cols=191  Identities=13%  Similarity=0.224  Sum_probs=171.3

Q ss_pred             CHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +.+.+..|+..|..++... ++...++..|+++.|+.+|.++++.+|..|+|+|++++.+++.++..++..|+++.|+.+
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  223 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  223 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence            4578889999999988643 466778889999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      |.+ .+..++..|+|+|++++++..+....+...++++.|+.+|.+++..++..|+|+|.+|+...+.....+++.|+++
T Consensus       224 l~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  302 (530)
T 1wa5_B          224 FNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  302 (530)
T ss_dssp             GGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             hcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence            997 6789999999999999998633334556689999999999999999999999999999988888888999999999


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      .|+.+|.++   +..+++.|+++|.+++..++....
T Consensus       303 ~Lv~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~  335 (530)
T 1wa5_B          303 RLVELLSHE---STLVQTPALRAVGNIVTGNDLQTQ  335 (530)
T ss_dssp             HHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHCCC---ChhhHHHHHHHHHHHHcCCHHHHH
Confidence            999999988   999999999999999988765443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=1.9e-18  Score=158.57  Aligned_cols=202  Identities=17%  Similarity=0.125  Sum_probs=158.3

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        142 GLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       142 g~~~Lv~LL~s~~~--~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      .+|+|+++|+++++  .++..|+++|.+++.+++..+..+.+.|++|+|+++|.+ .++.++..|+|||.||+.+++.+.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999988  999999999999999999999999999999999999997 578999999999999999899999


Q ss_pred             HHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC-------------CCCCh
Q psy14164        220 KEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE-------------DALDT  285 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~-------------~~~d~  285 (361)
                      ..+.++||++.|+++|. +++..++..|+.+|.+|.. .+..+..+++ +.+++|+.+|..+             ...+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 5799999999999999976 4567777776 5699999887411             01267


Q ss_pred             hHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHHh
Q psy14164        286 EMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH-AGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       286 ~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l-~~~~e~~~e~~~~~~il~~~  347 (361)
                      +++++|..+|.+|+..+++.-+.-+.-. ++.+.|-..++.- ...+-.....|-|..+|.++
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~-Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL  227 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCD-GLIDSLVHYVRGTIADYQPDDKATENCVCILHNL  227 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTST-THHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCC-CcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence            8999999999999987754433222211 2333333333322 11111223566777777653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.81  E-value=2.2e-18  Score=177.27  Aligned_cols=198  Identities=16%  Similarity=0.197  Sum_probs=168.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQN  177 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~  177 (361)
                      +...+..|.+  .+.+.+..|...|..++. +.++...++..||+|+||.+|.+++..++..|+|+|+|++.+ |+.++.
T Consensus        50 i~~LV~~L~s--~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           50 LPEVIAMLGF--RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             HHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            3555666654  456788889999999884 677888999999999999999999999999999999999986 799999


Q ss_pred             HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc------------------cCC
Q psy14164        178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ------------------SKK  239 (361)
Q Consensus       178 ~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~------------------s~~  239 (361)
                      .+++.|++|+|+++|.+..+..++..|+++|.+|+. ++.....++ .+|++.|+++|.                  +.+
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hccHHHHHHHHhccccccccccccccccccccc
Confidence            999999999999999975677899999999999998 566666777 578999999872                  236


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC---CCCChhHHHHHHHHHHHHHhc
Q psy14164        240 EKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       240 ~~v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ..++..|+++|.||+..+++.+..+++. |+++.|+.+|.+.   ...+...+++|+.+|.+|...
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence            8999999999999999888889999985 6678999999751   112678999999999999865

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.79  E-value=3.7e-18  Score=162.21  Aligned_cols=152  Identities=14%  Similarity=0.146  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCcc-cHHHHHHCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSID-YANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~id-na~~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      .+.+.+..|++.|..++.+-+ +...+++.||+++|+.+|++ ++..+|..|+|+|++++.+++..++.|++.|++|.|+
T Consensus        94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~  173 (296)
T 1xqr_A           94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM  173 (296)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence            456889999999999987544 55678899999999999985 5899999999999999999999999999999999999


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHH
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL  264 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l  264 (361)
                      .+|.+ .+..++++|+|+|++++.+++.....|++.|+++.|+.+|.+++.+++..|+++|.+|+...+.....+
T Consensus       174 ~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~  247 (296)
T 1xqr_A          174 RAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC  247 (296)
T ss_dssp             HHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence            99997 578999999999999999999999999999999999999999999999999999999999865544443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.78  E-value=1.3e-17  Score=167.60  Aligned_cols=223  Identities=11%  Similarity=0.075  Sum_probs=173.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHH---HHHHHHhcChH
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPF---SQNFIIQTDFL  185 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~---~q~~v~~~g~l  185 (361)
                      .+.+.+..|+..|.+++... ++...+.+.||++.|+.+|.+  +++.++..|+++|++++.+++.   .+..+++.|++
T Consensus       278 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i  357 (529)
T 1jdh_A          278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL  357 (529)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCCh
Confidence            45678899999999998753 578889999999999999975  4489999999999999987655   57789999999


Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHH-------------
Q psy14164        186 NLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC-------------  252 (361)
Q Consensus       186 ~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~-------------  252 (361)
                      |.|+++|.++.+..+++.++|+|+|++.+. ..+..+++.|+++.|+.+|.+++..+|+.|+|++++             
T Consensus       358 ~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~  436 (529)
T 1jdh_A          358 PVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  436 (529)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHH
T ss_pred             hHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHH
Confidence            999999997655699999999999999864 456889999999999999999889999988887776             


Q ss_pred             ---------HhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHH
Q psy14164        253 ---------LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       253 ---------L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~  323 (361)
                               |+. .++.+..+.+.|+++.|+.+|.++   +..++..+..+|.++..+.+. .......+ ++     +.
T Consensus       437 ~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~---~~~v~~~a~~~l~~l~~~~~~-~~~i~~~~-~~-----~~  505 (529)
T 1jdh_A          437 EGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKEA-AEAIEAEG-AT-----AP  505 (529)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSHHH-HHHHHHTT-CH-----HH
T ss_pred             HHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCC---chHHHHHHHHHHHHHhcCHHH-HHHHHHcC-Ch-----HH
Confidence                     433 456677899999999999999998   999999999999999865322 11111111 22     33


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHHh
Q psy14164        324 KEKHAGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       324 ~~~l~~~~e~~~e~~~~~~il~~~  347 (361)
                      +..+..+ ++.++++++..+|.++
T Consensus       506 L~~l~~~-~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          506 LTELLHS-RNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHGGGC-SSHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCHHHHHHHHHHHHhc
Confidence            4455433 6788999999998765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.76  E-value=6.5e-17  Score=166.31  Aligned_cols=162  Identities=12%  Similarity=0.113  Sum_probs=144.6

Q ss_pred             CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC-Chhh
Q psy14164        140 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE-NEEC  218 (361)
Q Consensus       140 ~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~-~~~~  218 (361)
                      .+++++||.+|.++++.++..|+++|.+++.+++..+..+++.|+||+|+++|.+ .+..++..|+|||.||+.+ ++.+
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHH
Confidence            5789999999999999999999999999999999999999999999999999997 5789999999999999986 6889


Q ss_pred             HHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC---------------CC
Q psy14164        219 LKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE---------------DA  282 (361)
Q Consensus       219 ~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~---------------~~  282 (361)
                      ...++++||++.|+++|.+ .+..++..|+++|.+|+. .++.+..+++ ++++.|+++|..+               ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 588999999999999987 5678888885 5799999987210               01


Q ss_pred             CChhHHHHHHHHHHHHHhcChH
Q psy14164        283 LDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       283 ~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      .+.++++.|..+|.+|+..++.
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~  225 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSE  225 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCHH
Confidence            1579999999999999988754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.5e-16  Score=163.74  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=155.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCH---HHHHHHHhcChH
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNP---FSQNFIIQTDFL  185 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~--~~~vr~~Aa~~Lg~iaqnn~---~~q~~v~~~g~l  185 (361)
                      .+.+.+..|+..|.+++... ++...+.+.||++.|+.+|.+.  ...++..|+++|++++.+++   ..|..+++.|++
T Consensus       275 ~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l  354 (644)
T 2z6h_A          275 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL  354 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccCh
Confidence            35678899999999998753 5677889999999999999763  37999999999999998765   567778999999


Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHH---------------------
Q psy14164        186 NLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVI---------------------  244 (361)
Q Consensus       186 ~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~---------------------  244 (361)
                      |.|+++|.+..+..+++.|+|+|+|++.+.. .+..+++.|+++.|+++|.+.+..+|+                     
T Consensus       355 ~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~  433 (644)
T 2z6h_A          355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  433 (644)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHH
T ss_pred             HHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHH
Confidence            9999999976557999999999999999644 558899999999999999876555544                     


Q ss_pred             -HHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        245 -KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       245 -kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                       .|+.+|.+|+. ++..+..+.+.|+++.|+.+|.+.   +..++..++.+|.+++..
T Consensus       434 ~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          434 EGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence             55555555654 346677888999999999999988   899999999999999865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.74  E-value=6e-16  Score=155.34  Aligned_cols=197  Identities=14%  Similarity=0.190  Sum_probs=170.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      .+...+..|.+ ..+.+.+..|+..|..+....++...+.+.|+++.|+.+|+++++.++..|+++|++++.+++..+..
T Consensus        60 ~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  138 (529)
T 1jdh_A           60 MVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence            34445555554 23567889999999999988888889999999999999999999999999999999999998888999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCC
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~  257 (361)
                      +.+.|++|.|+++|.+ .+..++..++.+|++++.+++.....+.+.||++.|+.+|++. +..++..++.++.+|+. .
T Consensus       139 i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~  216 (529)
T 1jdh_A          139 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C  216 (529)
T ss_dssp             HHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S
T ss_pred             HHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-C
Confidence            9999999999999997 5778999999999999999999999999999999999999876 56777778889999986 5


Q ss_pred             chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      +..+..+++.|+++.|+.+|.++   +..+++.++++|.+++..
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~  257 (529)
T 1jdh_A          217 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHCCCHHHHHHHHhCC---ChHHHHHHHHHHHHHhcC
Confidence            67889999999999999999877   777777777777777654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.71  E-value=1.5e-15  Score=157.90  Aligned_cols=197  Identities=14%  Similarity=0.190  Sum_probs=172.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      .+...+..|.+ ..+.+.+..|+..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus        57 ~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~  135 (644)
T 2z6h_A           57 MVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  135 (644)
T ss_dssp             HHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence            35555666664 34567889999999999988888889999999999999999999999999999999999998888889


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCC
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~  257 (361)
                      +.+.|++|.|+++|.+ .+..++..++.+|++++.+++.....+.+.||++.|+++|++. ..+++..++.++.+|+. .
T Consensus       136 v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~  213 (644)
T 2z6h_A          136 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C  213 (644)
T ss_dssp             HHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-C
T ss_pred             HHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-C
Confidence            9999999999999997 4668888888999999998899999999999999999999876 47888999999999986 5


Q ss_pred             chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      +..+..+++.|+++.|+.+|..+   +..+++.++++|.+|+..
T Consensus       214 ~~~~~~l~~~g~l~~L~~ll~~~---~~~~~~~a~~~L~nL~~~  254 (644)
T 2z6h_A          214 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDA  254 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTCS---CHHHHHHHHHHHHHHGGG
T ss_pred             cccHHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhhc
Confidence            77899999999999999999877   777888888887777654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.69  E-value=1.7e-15  Score=161.33  Aligned_cols=185  Identities=12%  Similarity=0.109  Sum_probs=155.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcC-C-CHHHHHHHHHHHHHHhhcCHH---HHHHHHhcChH
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEG-S-DPELRWRAAETVADIVQNNPF---SQNFIIQTDFL  185 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s-~-~~~vr~~Aa~~Lg~iaqnn~~---~q~~v~~~g~l  185 (361)
                      .+.+.+..|+..|..+.... ++...+.+.||++.|+.+|.+ + ...+|..|+++|++++.+++.   .|..+.+.|++
T Consensus       411 ~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l  490 (780)
T 2z6g_A          411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL  490 (780)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCH
Confidence            45678899999999998754 567788899999999999976 3 349999999999999987665   46788999999


Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHH----------------------HH
Q psy14164        186 NLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEK----------------------LV  243 (361)
Q Consensus       186 ~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~----------------------v~  243 (361)
                      |.|+++|.++....+++.|+|+|+||+++ +..+..+.+.|+++.|+++|.+++..                      ++
T Consensus       491 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~  569 (780)
T 2z6g_A          491 PVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  569 (780)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence            99999999865569999999999999985 45568888999999999999875544                      45


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        244 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       244 ~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ..++.+|.+|+. ++..+..+.+.|+++.|+.+|.+.   +..++..++.+|.+++..
T Consensus       570 ~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          570 EACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC
Confidence            566667777765 567778888999999999999998   999999999999999854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.66  E-value=8.8e-15  Score=155.86  Aligned_cols=185  Identities=14%  Similarity=0.171  Sum_probs=163.8

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+.+..|+..|..+....++...+...|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+|
T Consensus       206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL  285 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL  285 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHH
Confidence            56788899999999988878888899999999999999999999999999999999999989999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  271 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~  271 (361)
                      .+ .+..++..++.+|.+++.+++.....+++.||++.|+.+|++. ...++..++.++.+|+. .+..+..+++.|+++
T Consensus       286 ~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~  363 (780)
T 2z6g_A          286 NK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  363 (780)
T ss_dssp             GC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHH
T ss_pred             hc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHH
Confidence            97 5778999999999999999999999999999999999999976 46677788899999986 567888899999999


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .|+.+|.+.   +..+++.++++|.+|+...
T Consensus       364 ~Ll~lL~~~---~~~~~~~a~~~L~~L~~~~  391 (780)
T 2z6g_A          364 ALGLHLTDP---SQRLVQNCLWTLRNLSDAA  391 (780)
T ss_dssp             HHGGGTTCS---CHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCC---chHHHHHHHHHHHHHhccc
Confidence            999988876   7777777777777776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.3e-15  Score=156.60  Aligned_cols=277  Identities=10%  Similarity=0.098  Sum_probs=175.8

Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccccCCCC-HH-hHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy14164         48 NLQDLLRYAVEAGSRSRAQEAPNINRAASMN-EA-NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLS  125 (361)
Q Consensus        48 ~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s-~e-~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~  125 (361)
                      .+..|.+|+-.+ .|+..+.+     . +++ .+ -.+|-+.++     -+...+.-.+..+.+  .+...+..|...|.
T Consensus       417 ~l~~Lk~~A~~~-~p~~~~~d-----~-~~~~~~~v~~~~~~~l-----~eaGvIp~Lv~Ll~S--~s~~~re~A~~aL~  482 (778)
T 3opb_A          417 XXXXXXXXXXXX-XPAADKVG-----A-EKAAKEDILLFNEKYI-----LRTELISFLKREMHN--LSPNCKQQVVRIIY  482 (778)
T ss_dssp             -------------------CC-----T-HHHHHHHHHHHHHHHT-----TTTTHHHHHHHHGGG--SCHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccc-CcccCccc-----c-cccchHHHHHHHHHHH-----HHCcCHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            899999999776 35444332     1 111 11 011111111     112233333444433  46688999999999


Q ss_pred             HhhcCcccHHHHHHCCCHHHHHHhhcCCCHH---HHHHHHHHHHHHh-hcCHHHHHHHHh---cChHHHHHHhhccCCCH
Q psy14164        126 DYICSIDYANDFLKMGGLPVLQPLLEGSDPE---LRWRAAETVADIV-QNNPFSQNFIIQ---TDFLNLLLTSIEHDSNT  198 (361)
Q Consensus       126 ~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~---vr~~Aa~~Lg~ia-qnn~~~q~~v~~---~g~l~~Ll~LL~~~~~~  198 (361)
                      .++.+.++...+++.||+++|+.+|.+....   +|..|+++|+++. ..||..  .|-.   .|++|+|+.||..++..
T Consensus       483 nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~  560 (778)
T 3opb_A          483 NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPV  560 (778)
T ss_dssp             HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSC
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCc
Confidence            9999999999999999999999999887554   8999999999998 556654  2211   39999999999832111


Q ss_pred             -------------HHHHHHHHHHHHHhcCC----hhhHHHHHhh-CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        199 -------------TVQVKSLYAVSCLVREN----EECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       199 -------------~v~~~Al~ALS~l~r~~----~~~~~~f~~~-ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                                   -.+..|+.||.||+...    +.....++.. |+++.|..+|.+++..+|+.|+++|+||+.+ ++.
T Consensus       561 ~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~  639 (778)
T 3opb_A          561 DDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLT  639 (778)
T ss_dssp             SSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGG
T ss_pred             ccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHH
Confidence                         23779999999999975    2345677874 9999999999999999999999999999974 444


Q ss_pred             H-HHHHhC------CcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH-hhccCcchHHHHHHHHHHhhcChhh
Q psy14164        261 K-QVLLSM------GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS-LCRLEPLNLKFKLNFIKEKHAGNEV  332 (361)
Q Consensus       261 ~-~~l~~~------g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~-~~~~~~l~l~~~Le~~~~~l~~~~e  332 (361)
                      + +.+...      +.++.|+.++.++   |.++|..|.++|.+++..++...+ .+...+  +.+.|-+.++..   .+
T Consensus       640 i~~k~~~~~~~~~~~rL~lLV~Ll~s~---D~~~r~AAagALAnLts~~~~ia~~ll~~~~--gi~~Ll~lL~~~---~~  711 (778)
T 3opb_A          640 IAAKFFNLENPQSLRNFNILVKLLQLS---DVESQRAVAAIFANIATTIPLIAKELLTKKE--LIENAIQVFADQ---ID  711 (778)
T ss_dssp             TGGGTSCCSSHHHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHH--HHHHHHHHHHHT---TT
T ss_pred             HHHHHHhhcCchhhccHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCChHHHHHHHHccc--cHHHHHHHHhcc---CC
Confidence            3 233322      2388999999998   999999999999999877765433 232221  112222222222   24


Q ss_pred             hHHHHHHHHHHHHHhcC
Q psy14164        333 YHKELEYVNSVLTEVFE  349 (361)
Q Consensus       333 ~~~e~~~~~~il~~~f~  349 (361)
                      ..+....+..++.+.+.
T Consensus       712 ~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          712 DIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            45566677777777665

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.5e-14  Score=148.88  Aligned_cols=219  Identities=16%  Similarity=0.208  Sum_probs=169.5

Q ss_pred             CHHhHHHHHHHHHhhcCCH--------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCcccHHHHHH---CCCHHH
Q psy14164         78 NEANRGFLLDALNSMMVNV--------GAELEKIIKTLKENQDQ-KDICIGALDNLSDYICSIDYANDFLK---MGGLPV  145 (361)
Q Consensus        78 s~e~~~~L~eal~~~~~~~--------~~~mk~~l~~L~~~~~~-~~~~~~Al~~L~~lve~idna~~~~~---~Gg~~~  145 (361)
                      ++.-|+-.-.+|.++..+.        ...++-.+..|.+.... ...|..|+..|..+.-..+....|..   .|++++
T Consensus       470 s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~p  549 (778)
T 3opb_A          470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPF  549 (778)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHH
Confidence            4444555556666665222        11345556666654322 23789999999999877777766532   489999


Q ss_pred             HHHhhcC-CCH-------------HHHHHHHHHHHHHhhcC----HHHHHHHHhc-ChHHHHHHhhccCCCHHHHHHHHH
Q psy14164        146 LQPLLEG-SDP-------------ELRWRAAETVADIVQNN----PFSQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLY  206 (361)
Q Consensus       146 Lv~LL~s-~~~-------------~vr~~Aa~~Lg~iaqnn----~~~q~~v~~~-g~l~~Ll~LL~~~~~~~v~~~Al~  206 (361)
                      |+.||.. +..             --+..|+.+|+|++..+    +..+..+++. |++|.|..+|.+ .+..+|+.|++
T Consensus       550 Lv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~e  628 (778)
T 3opb_A          550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLE  628 (778)
T ss_dssp             HHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHH
T ss_pred             HHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHH
Confidence            9999983 221             12779999999999976    4567778885 999999999997 47799999999


Q ss_pred             HHHHHhcCChhhH-HHHHhh------CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhcc
Q psy14164        207 AVSCLVRENEECL-KEFIKR------DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLID  278 (361)
Q Consensus       207 ALS~l~r~~~~~~-~~f~~~------ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~  278 (361)
                      +|+||+. ++..+ +.|...      +++++|+.++++++.++|+.|+|+|+++++.++...+.+++. ++++.++.+|.
T Consensus       629 lI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~  707 (778)
T 3opb_A          629 LISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA  707 (778)
T ss_dssp             HHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHh
Confidence            9999997 55553 456432      358899999999999999999999999988788888888887 79999999999


Q ss_pred             C--CCCCChhHHHHHHHHHHHHHhc
Q psy14164        279 I--EDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       279 ~--~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      .  +   +.+++..++-++.+|+..
T Consensus       708 ~~~~---~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          708 DQID---DIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HTTT---CHHHHHHHHHHHHHHHTT
T ss_pred             ccCC---CHHHHHHHHHHHHHHHHh
Confidence            8  7   999999999999999973

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.44  E-value=1.3e-11  Score=126.60  Aligned_cols=221  Identities=19%  Similarity=0.275  Sum_probs=174.7

Q ss_pred             HHhHHHHHHHHHhhc---CCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc------------------cHH
Q psy14164         79 EANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQDQKDICIGALDNLSDYICSID------------------YAN  135 (361)
Q Consensus        79 ~e~~~~L~eal~~~~---~~~--~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id------------------na~  135 (361)
                      ++||.-+ .+|+++.   +.+  ...|+-.+.+|.+..++.+-...+|+.|..+....+                  ++.
T Consensus        37 eDRR~Av-~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d  115 (651)
T 3grl_A           37 DDRRNAV-RALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE  115 (651)
T ss_dssp             HHHHHHH-HHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHH
T ss_pred             hHHHHHH-HHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHH
Confidence            4444443 4466665   333  234888888888876777777778888877654332                  223


Q ss_pred             HHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhc-ChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        136 DFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       136 ~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~-g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      .|. +-++++.|+.+|++.+-.+|..++.+|..++.++|. .|+.++.. ++++.|+.+|++ ..+.+|-.|+..|++++
T Consensus       116 ~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt  194 (651)
T 3grl_A          116 IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALT  194 (651)
T ss_dssp             HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHh
Confidence            343 457899999999999999999999999999999999 99999966 999999999996 57899999999999999


Q ss_pred             cCChhhHHHHHhhCcHHHHHHhhccC----CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCC---Ch
Q psy14164        213 RENEECLKEFIKRDGFSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDAL---DT  285 (361)
Q Consensus       213 r~~~~~~~~f~~~ggi~~Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~---d~  285 (361)
                      ++++..++.+.-.|+++.|+.++...    ...+...++.++.+|+..+++.+..|.+.|+++.|+.+|..+++.   ..
T Consensus       195 ~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~  274 (651)
T 3grl_A          195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSA  274 (651)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCH
T ss_pred             cCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHH
Confidence            99999888888889999999999864    458999999999999999999999999999999999999865100   11


Q ss_pred             hHHHH---HHHHHHHHHhc
Q psy14164        286 EMNEH---LLSALASLIKD  301 (361)
Q Consensus       286 ~~~e~---al~aL~~L~~~  301 (361)
                      +....   ++.++..++..
T Consensus       275 Qk~~N~~~~L~iIrlLv~~  293 (651)
T 3grl_A          275 QKVTNLHLMLQLVRVLVSP  293 (651)
T ss_dssp             HHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            12222   56666666654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.23  E-value=6.9e-10  Score=113.98  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=166.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcC
Q psy14164         95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNN  172 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn  172 (361)
                      +..+-+.+.+.-+.+ +.-.++|..|+..|..+..  ++... +..+|++.|+..|+.  .+.++-..++.+|.++...+
T Consensus        18 s~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk--~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           18 TEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSK--KYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTT--TTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             ChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHH--HhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence            345556666666665 3446899999999999975  44333 335689999999976  57888889999998887665


Q ss_pred             HH-----------------HHHHHH-hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhh-CcHHHHH
Q psy14164        173 PF-----------------SQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE-CLKEFIKR-DGFSVLL  232 (361)
Q Consensus       173 ~~-----------------~q~~v~-~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~-ggi~~Lv  232 (361)
                      +.                 ..+.++ +.+.++.|+.+|++ .+..+|..++..|+.++.+.+. .++.++.. +|++.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            43                 223343 45889999999986 6889999999999999999888 67777755 8999999


Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC-CCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        233 RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       233 ~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      .+|+++...+|.+|..+|.+|+.++++.++.+.-.|+++.|.+++.... .....+.+-++..|.+|++.++.-..
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~  248 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN  248 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999999999999999999999998751 01236788899999999999974433

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.21  E-value=9.7e-11  Score=122.98  Aligned_cols=165  Identities=15%  Similarity=0.230  Sum_probs=136.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH-hhccCCCHHHHHHHHHHHHHHhcC-ChhhH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRE-NEECL  219 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~-LL~~~~~~~v~~~Al~ALS~l~r~-~~~~~  219 (361)
                      .+.|+++.|+|+++..|..||++|+++++ ++..+..++..|++++++. +|. +++..||..|++||.||+.+ .+...
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            57788899999999999999999999997 7889999999999988765 555 57889999999999999975 45667


Q ss_pred             HHHHhhCcHHHHHHhhccCC---------------------HHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhcc
Q psy14164        220 KEFIKRDGFSVLLRCIQSKK---------------------EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID  278 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL~s~~---------------------~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~  278 (361)
                      ..++..|++++|..+|.+..                     ..+...++.++.+|+....+....+...+.++.|+.+|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            77888999999999886421                     123345778899999888888888999999999999986


Q ss_pred             CCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164        279 IEDALDTEMNEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       279 ~~~~~d~~~~e~al~aL~~L~~~~~~~~~~  308 (361)
                      +......+++..|+.+|..+..+++..++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~  222 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQA  222 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHH
Confidence            541224679999999999999999876554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.05  E-value=3.2e-09  Score=111.41  Aligned_cols=191  Identities=13%  Similarity=0.077  Sum_probs=150.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHH
Q psy14164        103 IIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQN-NPFSQNFII  180 (361)
Q Consensus       103 ~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~  180 (361)
                      .++.|.+  .+.++|..|+..|..++++..+...+.+.|++.+++. +|.+++.+||..|+++|+|++.. .+.+...++
T Consensus        39 ll~~L~S--~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~  116 (684)
T 4gmo_A           39 VLKDLKS--PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY  116 (684)
T ss_dssp             HHHHHSS--SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHcCC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence            3444554  3457899999999999988777888999999988755 88999999999999999999975 588888999


Q ss_pred             hcChHHHHHHhhccCC-------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc---
Q psy14164        181 QTDFLNLLLTSIEHDS-------------N-------TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS---  237 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~-------------~-------~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s---  237 (361)
                      ..|++++|+.+|.+..             .       ..+...++++|.+++.++..+...+...++++.|+.+|.+   
T Consensus       117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~  196 (684)
T 4gmo_A          117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI  196 (684)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred             HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            9999999999985310             0       1234467889999999899999999999999999998854   


Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH---HHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE---QMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~---~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      ....++..|+.+|+.|+..++...+.+.+.+...   .+..+.+ .   +...+..+...|.++.
T Consensus       197 ~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~---~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          197 APQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G---TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S---SCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C---CcHHHHHHHHHHHhHh
Confidence            2579999999999999999999999998877533   3333223 3   3445566777777764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.99  E-value=3.5e-08  Score=86.50  Aligned_cols=151  Identities=17%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      .....+..|.+  .+...+..|+..|..+-.          -+.++.|+.+|.++++.+|..|+++|+.+..        
T Consensus        15 ~~~~~i~~L~~--~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           15 KVEMYIKNLQD--DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHTTC--SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             chHHHHHHhcC--CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            34555556655  345778888888876542          2468999999999999999999999998742        


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                         .++++.|+.+|.+ +++.+|..|+++|+.+..           ...++.|+.+|.+++..||..|++++..+..   
T Consensus        75 ---~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ---GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence               2578999999986 688999999999998732           2467888999999999999999999998843   


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                              ...++.|+.+|.++   +..+|..|+.+|..+
T Consensus       137 --------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDE---DGWVRQSAADALGEI  165 (201)
T ss_dssp             --------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHh
Confidence                    25788899999888   899999999999888

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.97  E-value=4.2e-08  Score=86.67  Aligned_cols=184  Identities=15%  Similarity=0.114  Sum_probs=136.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  179 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v  179 (361)
                      +...+..|.+  .+...+..|+..|..+-.          -.+++.|+.+|.++++.+|..|+++|+.+..         
T Consensus        21 ~~~L~~~L~~--~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------   79 (211)
T 3ltm_A           21 VEMYIKNLQD--DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   79 (211)
T ss_dssp             HHHHHHHTTC--SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            4555555553  456788888888877643          2579999999999999999999999998752         


Q ss_pred             HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCch
Q psy14164        180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ  259 (361)
Q Consensus       180 ~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~  259 (361)
                        .+.++.|+.+|.+ ++..+|..|+++|+.+..           ...++.|+.+|.+++..||..|++++..+..    
T Consensus        80 --~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 --ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             --GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence              3578999999986 678999999999998842           2467889999999999999999999999842    


Q ss_pred             HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHH
Q psy14164        260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEY  339 (361)
Q Consensus       260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~  339 (361)
                             ...++.|..+|.++   +..+|..++.+|..+..  +..           ...|.+.+.     ++.......
T Consensus       142 -------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~--~~~-----------~~~L~~~l~-----d~~~~vr~~  193 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDE---DGWVRQSAADALGEIGG--ERV-----------RAAMEKLAE-----TGTGFARKV  193 (211)
T ss_dssp             -------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCS--HHH-----------HHHHHHHHH-----HCCHHHHHH
T ss_pred             -------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc--hhH-----------HHHHHHHHh-----CCCHHHHHH
Confidence                   24688899999888   89999999999988842  222           222332221     134456667


Q ss_pred             HHHHHHHhcCC
Q psy14164        340 VNSVLTEVFEE  350 (361)
Q Consensus       340 ~~~il~~~f~~  350 (361)
                      +...|..+.+.
T Consensus       194 A~~aL~~~~~~  204 (211)
T 3ltm_A          194 AVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHhcCCC
Confidence            77777665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.97  E-value=2.3e-08  Score=88.33  Aligned_cols=154  Identities=14%  Similarity=0.121  Sum_probs=120.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  180 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~  180 (361)
                      ...+..|.+  .+...+..|+..|..+-.          .+.++.|+.+|.++++.||..|+++|+.+..          
T Consensus        53 ~~L~~~l~~--~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------  110 (211)
T 3ltm_A           53 EPLIKALKD--EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------  110 (211)
T ss_dssp             HHHHHHTTC--SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence            344444444  356778888888777642          2468999999999999999999999998853          


Q ss_pred             hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        181 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                       .+.++.|+.+|.+ ++..||..|+++|+.+.  .         ...++.|..+|++++..||..|++++..+-.     
T Consensus       111 -~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  172 (211)
T 3ltm_A          111 -ERAVEPLIKALKD-EDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----  172 (211)
T ss_dssp             -GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----
T ss_pred             -HHHHHHHHHHHhC-CCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----
Confidence             3578999999975 68899999999999983  2         2467889999999999999999999999842     


Q ss_pred             HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        261 KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       261 ~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                            ...++.|..+|..+   +..+|..|..+|..+...+.
T Consensus       173 ------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ------ERVRAAMEKLAETG---TGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             ------HHHHHHHHHHHHHC---CHHHHHHHHHHHHC------
T ss_pred             ------hhHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCCC
Confidence                  24577888899888   99999999999988876553

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.94  E-value=3.2e-08  Score=86.80  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  180 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~  180 (361)
                      ...+..|.+  .+...+..|+..|..+-.          -.+++.|+.+|.++++.||..|+++|+.+..          
T Consensus        48 ~~L~~~l~~--~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------  105 (201)
T 3ltj_A           48 EPLIKALKD--EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------  105 (201)
T ss_dssp             HHHHHHTTC--SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence            444444433  345677888877776532          2468999999999999999999999998742          


Q ss_pred             hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164        181 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  260 (361)
Q Consensus       181 ~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~  260 (361)
                       ..+++.|+.+|.+ ++..||..|+++|+.+..           ...++.|+.+|.+++..||..|++++..+-  .+  
T Consensus       106 -~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~--  168 (201)
T 3ltj_A          106 -ERAVEPLIKALKD-EDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE--  168 (201)
T ss_dssp             -GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH--
T ss_pred             -HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch--
Confidence             2478999999975 688999999999999842           346788999999999999999999999983  22  


Q ss_pred             HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        261 KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       261 ~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                             ..++.|..+|..+   +..+|..|..+|..+-
T Consensus       169 -------~~~~~L~~~l~d~---~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          169 -------RVRAAMEKLAETG---TGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------HHHHHHHHHHHHC---CHHHHHHHHHHHHHCC
T ss_pred             -------hHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence                   3677888889888   9999999999987654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.92  E-value=3.8e-08  Score=90.83  Aligned_cols=121  Identities=15%  Similarity=0.194  Sum_probs=76.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH
Q psy14164        150 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS  229 (361)
Q Consensus       150 L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~  229 (361)
                      ++++++.||..|+++||.+...++....     .+++.|+.++.+ ++..||..|+++|+.+..           ...++
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d-~~~~vR~~a~~aL~~~~~-----------~~~~~  162 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD-KSTNVRRATAFAISVIND-----------KATIP  162 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC-SCHHHHHHHHHHHHTC--------------CCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC-CCHHHHHHHHHHHHhcCC-----------HHHHH
Confidence            3456666666666666666544443221     346666666664 456666666666665532           23677


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      .|+.+|.+++..||..|++++..+....+         .+++.|+.+|.++   +..+|..++.+|..+.
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~---~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK---NEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC---CHHHHHHHHHHHHHhC
Confidence            77777777777788888887777643222         3567777888776   7788888888887765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.87  E-value=3e-07  Score=84.75  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=98.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .++.|+.+|+++++.||..|+++||.+..           .+++|.|+.++.+ ++..||..|+++|+.+..+.+     
T Consensus       129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~-----  191 (280)
T 1oyz_A          129 IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS-----  191 (280)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH-----
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH-----
Confidence            47888889999999999999999998642           2589999999986 678999999999999853332     


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                          ..++.|+.+|.+++..+|..|++++..+..           ...++.|+.+|..+   +  ++..+..+|..+.
T Consensus       192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~---~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKN---T--VYDDIIEAAGELG  249 (280)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSS---S--CCHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCc---c--HHHHHHHHHHhcC
Confidence                346788999999999999999999998752           35788999999865   4  8888888888774

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.66  E-value=4.3e-08  Score=104.58  Aligned_cols=174  Identities=12%  Similarity=0.092  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC
Q psy14164        117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  196 (361)
Q Consensus       117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~  196 (361)
                      +..|...|..++....  ..+.. ..++.+..+|.+++..+|..|+++||+++.+.+..-.. .-.+++|.|+.++.+ +
T Consensus       338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d-~  412 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSD-K  412 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCC-C
Confidence            5566666666654332  11111 24677777889999999999999999999887653322 224688999999985 6


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHH
Q psy14164        197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCV  275 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~  275 (361)
                      +..||..|+|+|++++...+......+-.+.++.|+..|.+++.++|..|++++.+++.. ++....++  .++++.|+.
T Consensus       413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~  490 (852)
T 4fdd_A          413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVF  490 (852)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHH
Confidence            789999999999999874322111111235678889999889999999999999999865 23333333  367888888


Q ss_pred             hccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        276 LIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       276 lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      ++...   +......++.++..++.
T Consensus       491 ~l~~~---~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          491 AFSKY---QHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHHC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---ChHHHHHHHHHHHHHHH
Confidence            88876   66666777888888764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.66  E-value=3.3e-07  Score=94.31  Aligned_cols=213  Identities=15%  Similarity=0.140  Sum_probs=145.2

Q ss_pred             HHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHH
Q psy14164         79 EANRGFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPE  156 (361)
Q Consensus        79 ~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~  156 (361)
                      .+-|+..--++..+.....+.+.-++..+...-  .+...+..|+..|..+. ..+....+     ++.+.++|.++++.
T Consensus        63 ~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~  136 (591)
T 2vgl_B           63 LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPY  136 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHH
T ss_pred             HHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChH
Confidence            344554444555554222333333344443222  23466777777776654 33333333     57789999999999


Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh---------HHHHHh---
Q psy14164        157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC---------LKEFIK---  224 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~---------~~~f~~---  224 (361)
                      ||..|+++++.+...+|..-   -+.++++.|..+|. ++++.|+..|+++|+.++.+++..         ...++.   
T Consensus       137 VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~  212 (591)
T 2vgl_B          137 VRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN  212 (591)
T ss_dssp             HHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence            99999999999999887632   33578999999998 478899999999999999876521         222221   


Q ss_pred             -------------------------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCCcHHHHHHh
Q psy14164        225 -------------------------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVL  276 (361)
Q Consensus       225 -------------------------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g~i~~Lv~l  276 (361)
                                               ...++.+..+|++.+..|+..|++++.++...   +++..+.+. ..+.+.|+.+
T Consensus       213 ~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L  291 (591)
T 2vgl_B          213 ECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTL  291 (591)
T ss_dssp             HCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHH
Confidence                                     12355666667788999999999999998742   334433332 3456778877


Q ss_pred             ccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        277 IDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       277 L~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      +. +   ++.+|-.++.+|..++...|+.+
T Consensus       292 ~~-~---d~~vr~~aL~~l~~i~~~~p~~~  317 (591)
T 2vgl_B          292 LS-G---EPEVQYVALRNINLIVQKRPEIL  317 (591)
T ss_dssp             TT-S---CHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             hc-C---CccHHHHHHHHHHHHHHhChHHH
Confidence            65 6   89999999999999998766543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.64  E-value=1.4e-07  Score=100.54  Aligned_cols=181  Identities=14%  Similarity=0.159  Sum_probs=130.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHC--CCHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKM--GGLPVLQPLL-----------EG-----------SDPELRWRAAETVAD  167 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~--Gg~~~Lv~LL-----------~s-----------~~~~vr~~Aa~~Lg~  167 (361)
                      .+++.+..|++-+..+++.....+.+...  ..+|.++..+           ..           ++..+|..|+.+|+.
T Consensus       268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~  347 (852)
T 4fdd_A          268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV  347 (852)
T ss_dssp             SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence            34678899998888888654322222110  2255556655           22           233589999999999


Q ss_pred             HhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHH
Q psy14164        168 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC  247 (361)
Q Consensus       168 iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~  247 (361)
                      ++...+.   .++. .++|.+..++.+ ++..+|..|+++|++++.+.......++ ...++.|+.+|++++..||..|+
T Consensus       348 la~~~~~---~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          348 LANVYRD---ELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             HHHHHGG---GGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHhccH---HHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHH
Confidence            9976542   2222 467888888876 5789999999999999998776544333 56789999999999999999999


Q ss_pred             HHHHHHhcCCch--HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        248 FLIACLCTDNNQ--VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       248 ~ll~~L~~~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      |++..++...+.  ...++  .++++.|+..|..+   +..+++.|+.+|.+++..+.
T Consensus       422 ~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~---~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDS---NKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhh
Confidence            999998863111  11111  25788889999877   89999999999999987554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=3.2e-09  Score=87.59  Aligned_cols=120  Identities=9%  Similarity=0.099  Sum_probs=90.8

Q ss_pred             CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        140 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       140 ~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      -..++.|+.+|+++++.+|..|+++|+.+..            ..++.|+.+|.+ ++..||..|+++|+.+..  +   
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSN-EDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcC-CCHHHHHHHHHHHHhcCC--H---
Confidence            3567889999999999999999999997632            126889999985 788999999999998742  1   


Q ss_pred             HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        220 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       220 ~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                            ..++.|+.+|.+++..||..|++++..+..           ...++.|+.+|+++   +..++..|..+|..
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~---~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETG---TGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSC---CTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Confidence                  247888999999999999999999998742           13578899999877   88999999988754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.58  E-value=1.3e-06  Score=89.75  Aligned_cols=167  Identities=13%  Similarity=0.167  Sum_probs=129.8

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+.|..++..+.++.-.....     ..+++.+++++.+++..+|..+...+..++..+|+...     -+++.|.+-|
T Consensus        26 ~~~~k~~~~~kli~~~~~G~d~-----~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL   95 (591)
T 2vgl_B           26 KKEKRKEAVKKVIAAMTVGKDV-----SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDC   95 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCC-----GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGS
T ss_pred             CHHHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHc
Confidence            4567777777777654322211     13678889999999999999999999999887665432     2467777888


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  272 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~  272 (361)
                      .+ +++.+|..|+.+|+++.  .+.....     .++.+..+|.++++.||++|++++..+...+|+...   +.++++.
T Consensus        96 ~~-~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~  164 (591)
T 2vgl_B           96 ED-PNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDS  164 (591)
T ss_dssp             SS-SSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHH
T ss_pred             CC-CCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHH
Confidence            86 68899999999999984  3443333     357788999999999999999999999987765432   3478899


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      +..+|.++   ++.++..|+.+|..+....+
T Consensus       165 l~~lL~d~---d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          165 LRDLIADS---NPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHHTTSCS---CHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHhCCC---ChhHHHHHHHHHHHHHhhCC
Confidence            99999987   99999999999999998765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.58  E-value=9.7e-07  Score=88.83  Aligned_cols=175  Identities=14%  Similarity=0.184  Sum_probs=120.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      .+...+..|+..|..+++......  .....+|.+..++++++..+|..|+.+|+.++...+..   .....++|.+..+
T Consensus       176 ~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~  250 (588)
T 1b3u_A          176 DTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQA  250 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence            456788888888888887654322  12345788888999999999999999999998765431   1223478888888


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-chHHHHHHhCCcH
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMV  270 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~~~~~~l~~~g~i  270 (361)
                      +.+ ++..+|..|+.+|+.++....+   .......++.+..++++++..+|..|++++..++..- +..+....-..++
T Consensus       251 ~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  326 (588)
T 1b3u_A          251 AED-KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL  326 (588)
T ss_dssp             HTC-SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHH
T ss_pred             ccC-CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence            875 6789999999999999874322   1233456889999999999999999999999998752 2211111112344


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                      +.+..++.++   +..+|..++.+|..+
T Consensus       327 p~l~~~l~d~---~~~vR~~a~~~l~~l  351 (588)
T 1b3u_A          327 PCIKELVSDA---NQHVKSALASVIMGL  351 (588)
T ss_dssp             HHHHHHHTCS---CHHHHHHHHTTGGGG
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHH
Confidence            5555555544   555555554444433

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.57  E-value=2.6e-06  Score=88.14  Aligned_cols=177  Identities=15%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc
Q psy14164        114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  193 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~  193 (361)
                      +-.+..|+..|..+.. .+.+.     ..++.+.++|.++++.||..|+.+++++...+|..-     .+.++.+..+|.
T Consensus       121 ~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~  189 (618)
T 1w63_A          121 QFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN  189 (618)
T ss_dssp             SHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT
T ss_pred             HhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC
Confidence            3455666666666542 22221     236788889999999999999999999999888532     267888888887


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc---------------CCHHHHHHHHHHHHHHhcCCc
Q psy14164        194 HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS---------------KKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       194 ~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s---------------~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      + .++.|+..|+++|+.++..++.....|.  .-++.|+..|..               .++-+|.++..++..++..++
T Consensus       190 D-~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~  266 (618)
T 1w63_A          190 E-KNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD  266 (618)
T ss_dssp             C-CCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred             C-CCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence            4 7889999999999999887655333343  445666655542               367777777777777766543


Q ss_pred             hHHH-------HHH----------------------h--------CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        259 QVKQ-------VLL----------------------S--------MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       259 ~~~~-------~l~----------------------~--------~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ....       .+.                      .        ..++..|..+|.+.   ++.+|..++.+|..++..
T Consensus       267 ~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~---d~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          267 DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN---DKNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS---STTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHhh
Confidence            3111       000                      0        13567888888887   899999999999999988


Q ss_pred             ChHHHH
Q psy14164        302 SPEAQS  307 (361)
Q Consensus       302 ~~~~~~  307 (361)
                      .|..+.
T Consensus       344 ~p~~~~  349 (618)
T 1w63_A          344 DHNAVQ  349 (618)
T ss_dssp             HHHHHG
T ss_pred             CHHHHH
Confidence            776543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.57  E-value=7.3e-06  Score=84.74  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=117.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .+..|.+-|+++++.+|..|+++||++.  ++..-     ..+++.+.++|.+ +++.||++|+.|+..+.+.+|.... 
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-----~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~-  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-----RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME-  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH-----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH-
Confidence            4677888899999999999999999997  34322     2468889999986 6889999999999999998886543 


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC------------CCCChhHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE------------DALDTEMNE  289 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~------------~~~d~~~~e  289 (361)
                          +.++.+..+|.+.+..|+..|++++..++..+++....+.  .+++.++.+|..-            ...++-.+.
T Consensus       179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~  252 (618)
T 1w63_A          179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV  252 (618)
T ss_dssp             ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred             ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence                4567788889999999999999999999887665444443  5788888877530            011677888


Q ss_pred             HHHHHHHHHHhcChHH
Q psy14164        290 HLLSALASLIKDSPEA  305 (361)
Q Consensus       290 ~al~aL~~L~~~~~~~  305 (361)
                      .++.+|..+....|..
T Consensus       253 ~il~~L~~l~~~~~~~  268 (618)
T 1w63_A          253 RILRLLRILGRNDDDS  268 (618)
T ss_dssp             HHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHhCCCCHHH
Confidence            9999999998877653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.57  E-value=8e-06  Score=77.69  Aligned_cols=193  Identities=15%  Similarity=0.179  Sum_probs=147.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q psy14164         94 VNVGAELEKIIKTLKENQDQKDICIGALDNLSD-YICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN  172 (361)
Q Consensus        94 ~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~-lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn  172 (361)
                      ..+..+..++++.|.+  .+.+++..+|-.|.. +.++.+.+..|+..+|+..|+....+.+...+..++++++++.-..
T Consensus       114 tsps~ra~~iiekL~~--~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v  191 (339)
T 3dad_A          114 TQLSVRVNAILEKLYS--SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV  191 (339)
T ss_dssp             ECHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH
T ss_pred             cCcHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence            4667777888888886  456789999999999 5578999999999999999999999999999999999999998653


Q ss_pred             HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-------Cc---HHHHHHhhc---cCC
Q psy14164        173 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR-------DG---FSVLLRCIQ---SKK  239 (361)
Q Consensus       173 ~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-------gg---i~~Lv~lL~---s~~  239 (361)
                      ......+-....+..|..++.+ .+..|.+.|+..|-++|-..+.....+.+.       .|   ++.|+.+|+   +.+
T Consensus       192 ~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D  270 (339)
T 3dad_A          192 DGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGAD  270 (339)
T ss_dssp             HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCC
T ss_pred             ccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCC
Confidence            3333333345678889999986 678999999999999988766554444432       23   889999998   779


Q ss_pred             HHHHHHHHHHHHHHhcCCch------HHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164        240 EKLVIKSCFLIACLCTDNNQ------VKQVLLSMGMVEQMCVLIDIEDALDTEMNEH  290 (361)
Q Consensus       240 ~~v~~kA~~ll~~L~~~~~~------~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~  290 (361)
                      ..++.+|..+|..++..-++      ....+-+.|+=..+..+|++. ..+.+++++
T Consensus       271 ~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~-~~~~~l~~Q  326 (339)
T 3dad_A          271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA-GTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT-TSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc-CCCHHHHHH
Confidence            99999999999999887442      334455666655666666553 114455444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.54  E-value=1.4e-06  Score=78.89  Aligned_cols=174  Identities=14%  Similarity=0.168  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHHHHhhcC-ccc-HHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHH
Q psy14164        112 DQKDICIGALDNLSDYICS-IDY-ANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNL  187 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~-idn-a~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~  187 (361)
                      .+-..|..|+..|..+++. .+. ..++.+  .++.|..+|. .++..||..|+.+|+.++..-. .....+  ..++|.
T Consensus        27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~  102 (242)
T 2qk2_A           27 KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS  102 (242)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence            4557888999999888864 111 112222  2667788884 8999999999999999996421 222222  238999


Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-Cch--HHHHH
Q psy14164        188 LLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQ--VKQVL  264 (361)
Q Consensus       188 Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~--~~~~l  264 (361)
                      |+..+.+ ++..||..|..||.+++...+  ...     .++.|...|++.+.++|..++.+|..++.. ++.  ....+
T Consensus       103 ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l  174 (242)
T 2qk2_A          103 LLEKFKE-KKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL  174 (242)
T ss_dssp             HHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence            9999985 678999999999999987543  222     457788889999999999999999997655 343  23333


Q ss_pred             HhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       265 ~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      -  .+++.|+.+|...   +..+|..|..++..+...-
T Consensus       175 ~--~l~p~l~~~l~D~---~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          175 K--LLTTSLVKTLNEP---DPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             H--HHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHc
Confidence            2  6899999999888   9999999999999988543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.47  E-value=1.4e-06  Score=80.01  Aligned_cols=181  Identities=13%  Similarity=0.137  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHHHH-hhcC-ccc---HHHHHHCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcC--HHHH-HHHHhc
Q psy14164        112 DQKDICIGALDNLSD-YICS-IDY---ANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVADIVQNN--PFSQ-NFIIQT  182 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~-lve~-idn---a~~~~~~Gg~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn--~~~q-~~v~~~  182 (361)
                      ..-.+|..|++.|.. +++. .+.   ..++..  .+..|.+.| +.++..||..|+.+|+.++.+-  +..+ .+..  
T Consensus        28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--  103 (249)
T 2qk1_A           28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--  103 (249)
T ss_dssp             SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence            445788899999998 8753 111   112222  266777788 7889999999999999999642  2333 3332  


Q ss_pred             ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc---h
Q psy14164        183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---Q  259 (361)
Q Consensus       183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~---~  259 (361)
                      -++|.++..+.+ ....|+..+..|+-+++...++....-.-...++.|...|++++..+|..++.+|..++...+   .
T Consensus       104 ~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~  182 (249)
T 2qk1_A          104 LVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS  182 (249)
T ss_dssp             HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence            279999999985 667999999999999988553211000001246778889999999999999999999887644   2


Q ss_pred             HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      .....+...+++.|+.+|..+   +..+|+.|..++..+..
T Consensus       183 ~l~~~l~~~iip~l~~~l~D~---~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          183 TLQRYLKDEVVPIVIQIVNDT---QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence            222233357899999999888   99999999999998874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.42  E-value=1.4e-05  Score=80.36  Aligned_cols=186  Identities=11%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             HHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQ-DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~-~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      .++.+..|.... ++.+.+..+...|..+++.++....  ....++.|..++.+++..||..|+.+|++++...+..+  
T Consensus        47 ~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~--~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~--  122 (588)
T 1b3u_A           47 RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--  122 (588)
T ss_dssp             HHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGG--GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH--
Confidence            344455554322 3456777777777776654322211  12245666677788899999999999999988765421  


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                       +..-.+|.+..+..+ .+..+|..|+..|+.++.+.+...    ....++.+..++++++..||..|+.++..++...+
T Consensus       123 -~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  196 (588)
T 1b3u_A          123 -LEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE  196 (588)
T ss_dssp             -HHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence             222345555555543 355666666666666665443221    12335555566666666677666666666665422


Q ss_pred             hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ..   .....+++.+..++..+   +..+|..|+.+|..++..
T Consensus       197 ~~---~~~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~  233 (588)
T 1b3u_A          197 LD---NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQL  233 (588)
T ss_dssp             HH---HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHH
T ss_pred             HH---hHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHh
Confidence            10   11224455555555555   556666666666555543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.41  E-value=7.6e-06  Score=86.27  Aligned_cols=180  Identities=12%  Similarity=0.180  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHHHHhhc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIE  193 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~Ll~LL~  193 (361)
                      ..+..|...|..++....  ..+.. ..++.+...|++++..+|..|++++|.++.+.. ..-...+. .++|.|+..+.
T Consensus       346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~  421 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN  421 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence            456667777766664332  11111 135556667788999999999999999997642 32222232 47888999987


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-C----chHHHHHHh
Q psy14164        194 HDSNTTVQVKSLYAVSCLVRENEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-N----NQVKQVLLS  266 (361)
Q Consensus       194 ~~~~~~v~~~Al~ALS~l~r~~~~~~--~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~----~~~~~~l~~  266 (361)
                      + +++.+|..++|+|+.++....+..  ..++ ...++.|+..|+++ .+++..|++++.+++.. .    .....++  
T Consensus       422 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--  496 (861)
T 2bpt_A          422 D-QSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--  496 (861)
T ss_dssp             C-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--
T ss_pred             C-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--
Confidence            5 678999999999999987532210  1111 24577888888776 99999999999999864 1    2222232  


Q ss_pred             CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      ..+++.|+.++... ..+..+|..++.+|..++...+.
T Consensus       497 ~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          497 PALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcch
Confidence            24578888888754 11378999999999999987653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.34  E-value=2.4e-05  Score=76.06  Aligned_cols=156  Identities=8%  Similarity=0.079  Sum_probs=109.9

Q ss_pred             CHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHHHHHHHHhcCChh
Q psy14164        142 GLPVLQPLLEGS--DPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       142 g~~~Lv~LL~s~--~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      .++.|+.++.++  ++.+|..|+.+++.++... +..-.... ..+++.++.+|.+.. +..||..|+.++++++.....
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888  8999999999999999754 32211111 247888999998743 689999999999997653322


Q ss_pred             hHHHH-HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        218 CLKEF-IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       218 ~~~~f-~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      ..... ...-.++.|...+.+++..+|..++.++..++...+......+..++++.++..+...   +..++..++..+.
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l~  284 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWS  284 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Confidence            21100 0111356667778888999999999999999876543322222226777888888877   8999999999988


Q ss_pred             HHHhc
Q psy14164        297 SLIKD  301 (361)
Q Consensus       297 ~L~~~  301 (361)
                      .++..
T Consensus       285 ~~~~~  289 (462)
T 1ibr_B          285 NVCDE  289 (462)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.33  E-value=1.9e-05  Score=71.42  Aligned_cols=173  Identities=12%  Similarity=0.156  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+...+..+|..|++++...|-.-... --..++.++.++.+.+..|--.|.+||+++..+.|-.-+.+.+  ++..|..
T Consensus        45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~d  122 (265)
T 3b2a_A           45 DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVS  122 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHH
Confidence            556889999999999998754433322 2246999999999999999999999999999999887777755  6788888


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHHHhCC
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMG  268 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~~g  268 (361)
                      ++.+ ++.-++..|+-.++.+ +-....      ...+..|.+++.|++.++|.-+..++.+++..  +++..     .+
T Consensus       123 lik~-~~~il~~eaae~Lgkl-kv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~-----~~  189 (265)
T 3b2a_A          123 LLES-PDDMMRIETIDVLSKL-QPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL-----TL  189 (265)
T ss_dssp             HTTS-CCHHHHHHHHHHHHHC-CBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG-----GG
T ss_pred             HhcC-CCchHHHHHHHHhCcC-Ccccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH-----HH
Confidence            8885 7889999999999998 211111      23456778899999999999999999999874  33333     24


Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ++.-+-.+|++.   |+.+++.|+.+|..+++..
T Consensus       190 I~~eI~elL~~e---D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          190 ILDEIPSLLQND---NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             TTTTHHHHHTCS---CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCc
Confidence            566677889998   9999999999999999764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.31  E-value=6.5e-07  Score=73.54  Aligned_cols=88  Identities=10%  Similarity=0.037  Sum_probs=74.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .++.|+.+|+++++.||..|+++||++..  +         .+++.|+.+|.+ ++..||..|+++|+.+.  .      
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~--~------  102 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLED-DSGFVRSGAARSLEQIG--G------  102 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--S------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--c------
Confidence            37899999999999999999999998752  2         358999999985 67799999999999984  1      


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  252 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~  252 (361)
                         ...++.|+.+|++++..||..|+++|..
T Consensus       103 ---~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 ---ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               2357888999999999999999988764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.30  E-value=8.9e-06  Score=79.19  Aligned_cols=182  Identities=8%  Similarity=0.121  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH--------------
Q psy14164        113 QKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--------------  177 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~--------------  177 (361)
                      +.+.+..+++.|..+++..... ..+...+.++.++.++.+.+..+|..|++.+++++........              
T Consensus       230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (462)
T 1ibr_B          230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  309 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence            4566777888887776532210 0111114567778888899999999999999999865311100              


Q ss_pred             ---HHHh---cChHHHHHHhhccC------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHH
Q psy14164        178 ---FIIQ---TDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIK  245 (361)
Q Consensus       178 ---~v~~---~g~l~~Ll~LL~~~------~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~k  245 (361)
                         .+++   ..++|.|++.+...      .+..+|..|+.+|+.++...+.   .++ ...++.+...|.+++.++|..
T Consensus       310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~a  385 (462)
T 1ibr_B          310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDA  385 (462)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHH
T ss_pred             hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHH
Confidence               0111   23677787777531      2237999999999999886553   222 346788888999999999999


Q ss_pred             HHHHHHHHhcCCc-h-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        246 SCFLIACLCTDNN-Q-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       246 A~~ll~~L~~~~~-~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      |++++..++.+.. + ....+  ..+++.++.+|.++   +..+|..|+++|..++...+
T Consensus       386 al~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~---~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          386 AVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP---SVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcc
Confidence            9999999997632 2 12222  46899999999988   99999999999999997553

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.29  E-value=6.7e-06  Score=74.33  Aligned_cols=147  Identities=14%  Similarity=0.143  Sum_probs=114.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      +.+...+.+.+...|..|+..|+.++.+++.....-+ ..+++.|..++..+++..|+..|+.+|+.++.+-.+.+..+.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3477888999999999999999999987554211101 246778888885347889999999999999976444333333


Q ss_pred             hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                       ...++.|+..+.++...+|..|+.++..++...+ .      ..+++.+...|.+.   +..+++.++..|..++...
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~---~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNK---NPSVKSETALFIARALTRT  164 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHc
Confidence             3468999999999999999999999999987532 1      13578888999988   9999999999999977654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.28  E-value=2.6e-06  Score=90.00  Aligned_cols=180  Identities=13%  Similarity=0.200  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHHHHhhc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIE  193 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~Ll~LL~  193 (361)
                      ..+..|...|..+++...  ..+.. ..++.+...|.+++..+|..|++++|.++.+.+ ..-...+ ..++|.|+..|.
T Consensus       343 ~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~  418 (876)
T 1qgr_A          343 NPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK  418 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence            456666666666654322  11111 235666677888999999999999999998754 3222222 358999999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-------------
Q psy14164        194 HDSNTTVQVKSLYAVSCLVRENEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-------------  258 (361)
Q Consensus       194 ~~~~~~v~~~Al~ALS~l~r~~~~~~--~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-------------  258 (361)
                      + ++..||..|+|+|++++...+...  ..++ ...++.|+..|.++ .+++..|++++.+++....             
T Consensus       419 d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~  495 (876)
T 1qgr_A          419 D-PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPA  495 (876)
T ss_dssp             C-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred             C-CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            5 678999999999999998755421  1121 34567888888775 9999999999999986411             


Q ss_pred             --hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        259 --QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       259 --~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                        ....++  ..+++.|..++......+..++..++.+|..++...+
T Consensus       496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~  540 (876)
T 1qgr_A          496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA  540 (876)
T ss_dssp             CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred             chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence              122222  2467888888876411235788889999999887653

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=98.25  E-value=2.9e-05  Score=72.68  Aligned_cols=241  Identities=13%  Similarity=0.140  Sum_probs=144.9

Q ss_pred             HHHHHHHhcC-C--C-CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH--hhcCCCHHHHHHHHHHHHHHhhcCHH
Q psy14164        101 EKIIKTLKEN-Q--D-QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP--LLEGSDPELRWRAAETVADIVQNNPF  174 (361)
Q Consensus       101 k~~l~~L~~~-~--~-~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~--LL~s~~~~vr~~Aa~~Lg~iaqnn~~  174 (361)
                      .++...+.+. .  . +.+....||+.|.++.+++...-.+.... +..|-.  |..+.++.+|+.|+++||.+.+|||.
T Consensus        25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~  103 (315)
T 3qml_C           25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPP  103 (315)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHH
Confidence            4455555553 2  2 23578899999999999998877766532 444444  44567789999999999999999999


Q ss_pred             HHHHHHhc--ChHHHHHHhhcc------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHH
Q psy14164        175 SQNFIIQT--DFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVI  244 (361)
Q Consensus       175 ~q~~v~~~--g~l~~Ll~LL~~------~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~  244 (361)
                      +-+.|.+.  ..+..+..-|..      .....+++.-+++|..|+...    ..| ...|+..|.+++...  +..+|.
T Consensus       104 Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~  178 (315)
T 3qml_C          104 VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQI  178 (315)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHH
Confidence            99988775  333333332221      134578888999999999864    234 366889998888877  999999


Q ss_pred             HHHHHHHHHhcC---Cc------hHHHHHH-----hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhc
Q psy14164        245 KSCFLIACLCTD---NN------QVKQVLL-----SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCR  310 (361)
Q Consensus       245 kA~~ll~~L~~~---~~------~~~~~l~-----~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~  310 (361)
                      |++.+|..+...   ..      ..++.+-     .+++...+-.++.+. ..|..-....-..|.+|=+..+..+    
T Consensus       179 Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k-~~dE~~~r~fF~~L~~ik~~~~~~l----  253 (315)
T 3qml_C          179 KVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNK-SIDELHTRTFFDTLYNLKKIFKSDI----  253 (315)
T ss_dssp             HHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHHGGGS----
T ss_pred             HHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHhccccc----
Confidence            999999988741   10      1111111     112444555655543 2233334455666777665442222    


Q ss_pred             cCcchHHHHHHHHH----HhhcCh--hhhHHHHHHHHHHHH---HhcCCCC
Q psy14164        311 LEPLNLKFKLNFIK----EKHAGN--EVYHKELEYVNSVLT---EVFEEDS  352 (361)
Q Consensus       311 ~~~l~l~~~Le~~~----~~l~~~--~e~~~e~~~~~~il~---~~f~~~~  352 (361)
                      .+...|.+||-+-.    +++.+.  +-..++-++=..+++   ..||.|-
T Consensus       254 K~~~~FLnWLa~E~e~Rk~~~~~~~~~rd~eq~~FD~~li~sRH~VFGNPm  304 (315)
T 3qml_C          254 TINKGFLNWLAQQCKARQSNLDNGLQERDTEQDSFDKKLIDSRHLIFGNPM  304 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHHHHHHHTTTC----
T ss_pred             CCCHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHHHcCCch
Confidence            33347888887543    232211  112333444444544   5677653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.24  E-value=6.4e-05  Score=77.82  Aligned_cols=170  Identities=10%  Similarity=-0.007  Sum_probs=133.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      .+...|..++..+.++.-.....     .-|+..+++++.+++..+|..+--.+..++..+++.--.     ++..+.+=
T Consensus        50 ~~~~~k~~~l~Kli~l~~~G~d~-----s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kD  119 (621)
T 2vgl_A           50 LDGYSKKKYVCKLLFIFLLGHDI-----DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKND  119 (621)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCC-----CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCC-----chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHh
Confidence            45677888888887764322111     247899999999999999999999999999888754322     35556666


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  269 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL--~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~  269 (361)
                      |.+ +++.+|.-|+.+||++.  .+.-.     ...++.+.++|  .+.++.||++|+.++..+...+|+....   .++
T Consensus       120 l~~-~n~~ir~lALr~L~~i~--~~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~---~~~  188 (621)
T 2vgl_A          120 LAS-RNPTFMGLALHCIANVG--SREMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM---GDW  188 (621)
T ss_dssp             HHS-CCHHHHHHHHHHHHHHC--CHHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC---CSC
T ss_pred             cCC-CCHHHHHHHHHHhhccC--CHHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc---hhH
Confidence            664 68899999999999994  33322     24567888999  8889999999999999999877765432   589


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                      ++.+..+|...   |+.++..|+.+|..+....|..
T Consensus       189 ~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          189 TSRVVHLLNDQ---HLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             HHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHhCCC---CccHHHHHHHHHHHHHHhChHH
Confidence            99999999877   9999999999999999888753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.16  E-value=0.00029  Score=74.32  Aligned_cols=200  Identities=10%  Similarity=0.123  Sum_probs=129.9

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN  177 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~  177 (361)
                      +...+..+.+.+.+.+.+..|+..|..++......  ........++.+..++.+++..+|..|+++|+.++...+..-.
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33344444443335677888999988877543211  0000011366677788889999999999999999987765422


Q ss_pred             HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh---------------------hh----HHHHH---------
Q psy14164        178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE---------------------EC----LKEFI---------  223 (361)
Q Consensus       178 ~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~---------------------~~----~~~f~---------  223 (361)
                      ..+...+++.++..+.+ .++.++..|+..++.+++...                     ..    ...++         
T Consensus       254 ~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  332 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence            33334677777776654 456777777777776664210                     00    00000         


Q ss_pred             ------------------------h-------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-hHHHHHHhCCcHH
Q psy14164        224 ------------------------K-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVE  271 (361)
Q Consensus       224 ------------------------~-------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-~~~~~l~~~g~i~  271 (361)
                                              .       ...++.+...|.+++.++|..|++++..++.+.. +...... ..+++
T Consensus       333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~  411 (876)
T 1qgr_A          333 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMP  411 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence                                    0       0123445566677889999999999999987643 3332222 34788


Q ss_pred             HHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      .++..|..+   +..+|..|+++|..++...+.
T Consensus       412 ~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          412 TLIELMKDP---SVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHTCS---SHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHHHHhCch
Confidence            999999887   899999999999999987643

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.12  E-value=0.00017  Score=65.24  Aligned_cols=187  Identities=17%  Similarity=0.198  Sum_probs=138.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .+..|+.+|...++.++.+|+.+|+.+...-|.......=..+++.++.++.+ .++.+..+|+-+|-.+..+.|..-..
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            36778889999999999999999999998754444444445699999999986 78899999999999999998887777


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      |.  -....|..++.+++.-++..|+-.+..+---.+ .      .+++..+..++++.   |.+++..++.+|.+++..
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~------~~V~~~l~sLl~Sk---d~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-S------KLVRTYINELVVSP---DLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-C------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHGGG
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-h------HHHHHHHHHHHhCC---ChhHHHHHHHHHHHhhcc
Confidence            76  356788888889999999999999998822121 1      14577788888888   999999999999999976


Q ss_pred             ChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCC
Q psy14164        302 SPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEED  351 (361)
Q Consensus       302 ~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~  351 (361)
                      +.+       ++ .+.+++.+...-++ + +.....+++-.+++..++-+
T Consensus       181 S~D-------~~-i~~~I~~eI~elL~-~-eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 SAD-------SG-HLTLILDEIPSLLQ-N-DNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CSS-------CC-CGGGTTTTHHHHHT-C-SCHHHHHHHHHHHHHHTTSC
T ss_pred             cCC-------HH-HHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHHcCc
Confidence            521       11 11222223333333 3 24556677777777766643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.11  E-value=5.2e-05  Score=83.92  Aligned_cols=185  Identities=10%  Similarity=0.130  Sum_probs=132.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      ++.|+..+.+.+..+|..++.+||.++...|        ...+|.|.+.+.+ .+..+|..++.++..++.+.+......
T Consensus       933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~-~~~~~R~~~~~~l~~~~~~~~~~~~~~ 1003 (1230)
T 1u6g_C          933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1003 (1230)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccCchhhHHH
Confidence            3444555556778899999999999998876        4588989888886 567899999999998887766554433


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC---------------CCChhH
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED---------------ALDTEM  287 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~---------------~~d~~~  287 (361)
                      +. .-++.++..|++++..||+.|+.++..++...+......+. .+++.|...+...+               ....++
T Consensus      1004 l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~-~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~ 1081 (1230)
T 1u6g_C         1004 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1081 (1230)
T ss_dssp             HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred             HH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHH-HHHHHHHHHhcccHHhheeeccCCcccccCCcHHH
Confidence            32 23466677889999999999999999998877665433332 36777777664330               012389


Q ss_pred             HHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164        288 NEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFE  349 (361)
Q Consensus       288 ~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~  349 (361)
                      |+.|..++..|+..+...        ..+.+++.+-+..+..+   .|+.-+|..++.++..
T Consensus      1082 rk~a~~~~~~ll~~~~~~--------i~~~~~~~~~~~gl~d~---~di~~~~~~~l~~l~~ 1132 (1230)
T 1u6g_C         1082 RKAAFECMYTLLDSCLDR--------LDIFEFLNHVEDGLKDH---YDIKMLTFLMLVRLST 1132 (1230)
T ss_dssp             HHHHHHHHHHHHHSSCSS--------SCHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHcccCch---HHHHHHHHHHHHHHHh
Confidence            999999999999876432        24566777766666643   4666677777776654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.05  E-value=1.7e-05  Score=83.65  Aligned_cols=198  Identities=13%  Similarity=0.185  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcC---------------CCHHHHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEG---------------SDPELRWRAA  162 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s---------------~~~~vr~~Aa  162 (361)
                      .|...+..+...+.+...+..++..|..++...... ..+.. ..++.++..|..               ....+|..++
T Consensus       499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  577 (861)
T 2bpt_A          499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL  577 (861)
T ss_dssp             HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence            344444555543332456777788877777644322 11111 246667776652               2457899999


Q ss_pred             HHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHH
Q psy14164        163 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEK  241 (361)
Q Consensus       163 ~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~-~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~  241 (361)
                      .+|++++..-+..-..++ ...++.++.++... +. .++..+++++++++.........++ ...++.|...|.+++..
T Consensus       578 ~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~  654 (861)
T 2bpt_A          578 TVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSP  654 (861)
T ss_dssp             HHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHH
Confidence            999999987654111111 24778888888763 34 7899999999999876544444444 24678889999888889


Q ss_pred             HHHHHHHHHHHHhcCC-chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        242 LVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       242 v~~kA~~ll~~L~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      ++..|+.++..++..- .....++  ..+++.++..|.++ +.+.++++.++.++..++...+
T Consensus       655 vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          655 VSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhh
Confidence            9999999999998753 2333333  35677888888765 1137899999999999887543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.01  E-value=0.001  Score=58.14  Aligned_cols=166  Identities=12%  Similarity=0.158  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      .+..|+..+..+.+.......    -.+.-|+.+| .|+.-.+-..-++++|.++.-+|+.-.     +++|.|..-..-
T Consensus        48 V~kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyri  118 (253)
T 2db0_A           48 VVKNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRI  118 (253)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCC
T ss_pred             HHHhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhc
Confidence            566777777776665442211    0133344444 466667777889999999999997443     468888887776


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  274 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv  274 (361)
                       .++.+|..-.|+|.-|.|.||.....+     +.-+..+|.+++..=|.-|..+|..+-.+++   +++  .-+++.|.
T Consensus       119 -gd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen~~---~yv--~PfLprL~  187 (253)
T 2db0_A          119 -GDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSF---KYV--NPFLPRII  187 (253)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH---HHH--GGGHHHHH
T ss_pred             -CCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhccCc---ccc--CcchHHHH
Confidence             488999999999999999998765433     4567778889998778888888887755544   333  25799999


Q ss_pred             HhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164        275 VLIDIEDALDTEMNEHLLSALASLIKDSPE  304 (361)
Q Consensus       275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~~~  304 (361)
                      .||...   |.-+|..+..+|.+++..+|.
T Consensus       188 aLL~D~---deiVRaSaVEtL~~lA~~npk  214 (253)
T 2db0_A          188 NLLHDG---DEIVRASAVEALVHLATLNDK  214 (253)
T ss_dssp             GGGGCS---SHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHcCc---chhhhHHHHHHHHHHHHcCHH
Confidence            999998   999999999999999999975

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.93  E-value=0.0008  Score=63.97  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=122.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-
Q psy14164        146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK-  224 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~-  224 (361)
                      ++.-|.+++...+..|+.-|..+.+.....-..|++.+|+..|+++..+ .+-+.+..++.|+.++.- +..+...++. 
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence            4454556777888899999999888777788889999999999999986 477999999999999876 6777777774 


Q ss_pred             hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHH--------hCC--cHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164        225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL--------SMG--MVEQMCVLIDIEDALDTEMNEHLLSA  294 (361)
Q Consensus       225 ~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~--------~~g--~i~~Lv~lL~~~~~~d~~~~e~al~a  294 (361)
                      ...+..|..++.+.+..|.+.|..++-.++...+.....+.        +.|  .+..|+.+|...+..|.+++.+++..
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL  280 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            34788889999988999999999999998876543332222        122  36789999972222399999999999


Q ss_pred             HHHHHhcCh
Q psy14164        295 LASLIKDSP  303 (361)
Q Consensus       295 L~~L~~~~~  303 (361)
                      |-.++...|
T Consensus       281 IN~lL~~ap  289 (339)
T 3dad_A          281 INKTLAALP  289 (339)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHhcCC
Confidence            988888766

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.93  E-value=0.00016  Score=79.95  Aligned_cols=189  Identities=11%  Similarity=0.116  Sum_probs=130.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCccc---HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDY---ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN  177 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idn---a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~  177 (361)
                      ...+..+.+  .+.+.+..|+..|...+..-..   ...+  -..++.|++.|.++++.+|..|+.+|+.++...+..  
T Consensus         9 ~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            9 SNLLEKMTS--SDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHhcCC--CCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--
Confidence            344444443  3456788888887776532100   0011  124778899999999999999999999999865541  


Q ss_pred             HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHH
Q psy14164        178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-----LKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIA  251 (361)
Q Consensus       178 ~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-----~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~  251 (361)
                      . + ..+++.|+..+.+ ++..+|..|+.+|+.++....+.     .....-...++.|+..+. +++.+++..|+.++.
T Consensus        83 ~-~-~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 Q-V-ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             H-H-HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             H-H-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            1 1 2367888888875 45589999999999998765432     011122456889999998 578999999999999


Q ss_pred             HHhcCC-chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        252 CLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       252 ~L~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      .++... .....++  ..+++.+...|.++   +..+|+.|+.+|..++...+
T Consensus       160 ~~~~~~~~~l~~~~--~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFH--PSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHTCSSCTTTH--HHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHhHhHHHHHH--HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcC
Confidence            998532 1111111  24677888888887   88999999999999887553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.81  E-value=0.00098  Score=64.27  Aligned_cols=139  Identities=14%  Similarity=0.121  Sum_probs=84.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      +..+++++.+++..+|...--.+-+++...+   +.++   +...|.+=+.+ +++-+|..|+.++++|.-  +.-.+  
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~--~~m~~--  138 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTG-KEDSYRGPAVRALCQITD--STMLQ--  138 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCC--TTTHH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCC--HHHHH--
Confidence            4555667777777777777766666665422   1111   34455555554 456777777777777743  22222  


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         ...+.+.++|.+.++-||++|+.++.+|....|+..+     +++..+-+++.+.   ++-++-+|+.+|..+...+
T Consensus       139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~---n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSD---NIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCS---SHHHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhhc
Confidence               2234566677777777777777777777666655432     4666677777666   6666667777776666555


Q ss_pred             h
Q psy14164        303 P  303 (361)
Q Consensus       303 ~  303 (361)
                      +
T Consensus       208 ~  208 (355)
T 3tjz_B          208 R  208 (355)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.80  E-value=7e-05  Score=68.58  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=112.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHH-HhhcCHHHHHHHHh-cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh-hhHH-H
Q psy14164        146 LQPLLEGSDPELRWRAAETVAD-IVQNNPFSQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE-ECLK-E  221 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~-iaqnn~~~q~~v~~-~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~-~~~~-~  221 (361)
                      +...+.|++..-|..|+..|+. ++.+++.......+ ...+..|.+.+..+++..++..|+.+|+.|+.+-. +.+. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3456789999999999999999 98776543210011 13577788888556788999999999999997654 3443 3


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-chHHH-HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~~~~~-~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      +. .-.++.|+..+.+....|+..+..++..++..- +.... ++  ..+++.|...|.+.   +..+++.++.+|..++
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k---~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHK---TPQIRMECTQLFNASM  174 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCS---SHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHH
Confidence            43 236889999999989999999999998888642 21100 01  12577888999988   8999999999999999


Q ss_pred             hcCh
Q psy14164        300 KDSP  303 (361)
Q Consensus       300 ~~~~  303 (361)
                      ...+
T Consensus       175 ~~~~  178 (249)
T 2qk1_A          175 KEEK  178 (249)
T ss_dssp             HHCC
T ss_pred             HHcC
Confidence            7665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.76  E-value=0.00068  Score=70.08  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=91.0

Q ss_pred             CHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh--cCC
Q psy14164         78 NEANRGFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL--EGS  153 (361)
Q Consensus        78 s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL--~s~  153 (361)
                      +.+.|+..-=++..+...+.+.+.-++..+...-  .+.-.+-.||..|..+.. .+.+..     .++.+.++|  .++
T Consensus        87 ~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~-----l~~~v~~~l~~~d~  160 (621)
T 2vgl_A           87 RYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-REMAEA-----FAGEIPKILVAGDT  160 (621)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHH-----HTTHHHHHHHCSSS
T ss_pred             CHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHH-----HHHHHHHHHhCCCC
Confidence            3445555555566666444555555444443211  234556777777777642 233332     368888999  889


Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE  217 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~  217 (361)
                      ++-||..|+-++..+...+|..-   -..+.++.|.++|. +.++.|+..|+.+|..++..++.
T Consensus       161 ~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          161 MDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChH
Confidence            99999999999999999887532   22488999999997 47889999999999999987765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.58  E-value=0.016  Score=53.57  Aligned_cols=190  Identities=13%  Similarity=0.094  Sum_probs=121.8

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh----hcCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHhcCh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL----LEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDF  184 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L----L~s~~~~vr~~Aa~~Lg~iaqn----n~~~q~~v~~~g~  184 (361)
                      +-..+..|++.|...+++  +...+..  -+..+++.    +.+++..|...++.+|..+..-    +....+.-. .-.
T Consensus        59 d~k~~~~ale~L~~~l~~--~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~  133 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADT--SPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF  133 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHH--CHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred             CHHHHHHHHHHHHHHhhh--ChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence            457788888888887753  2222221  23334442    2367999999999999887532    111111100 236


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHH
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQV  263 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~  263 (361)
                      +|.|+.-+-+ +.+.+|..+-..+-.++.-+++.       ..++.+...+.+.+.|+|..++..+.++... +..    
T Consensus       134 lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----  201 (266)
T 2of3_A          134 VPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----  201 (266)
T ss_dssp             HHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred             HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence            8999888864 56688887776665544322222       2456778899999999999999999999865 322    


Q ss_pred             HHhCCcH---HHHHHhccCCCCCChhHHHHHHHHHHHHHhcC-hHHHHhhccCcchHHHHHHHHH
Q psy14164        264 LLSMGMV---EQMCVLIDIEDALDTEMNEHLLSALASLIKDS-PEAQSLCRLEPLNLKFKLNFIK  324 (361)
Q Consensus       264 l~~~g~i---~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~-~~~~~~~~~~~l~l~~~Le~~~  324 (361)
                        ....+   +.++.+|...   |..+|..|+.++..+-... ...+...++-.-.-++.|++++
T Consensus       202 --~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~  261 (266)
T 2of3_A          202 --PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERI  261 (266)
T ss_dssp             --GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --ccccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHH
Confidence              13467   9999999998   9999999999998776533 2333333322223344444443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0043  Score=57.00  Aligned_cols=177  Identities=12%  Similarity=0.147  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHhhcCccc---H-HHHHHCCCHHHH-HHhhcCCCHHHHHHHHHHHHHHhhcCHH-----HHHHHHhcC
Q psy14164        114 KDICIGALDNLSDYICSIDY---A-NDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPF-----SQNFIIQTD  183 (361)
Q Consensus       114 ~~~~~~Al~~L~~lve~idn---a-~~~~~~Gg~~~L-v~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-----~q~~v~~~g  183 (361)
                      =..|..|+++|..++.....   . ..+...+.+..+ -..+...+..|...|+.+|..++..-..     ......-..
T Consensus        23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~  102 (278)
T 4ffb_C           23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIST  102 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Confidence            36788888888887764321   1 122234444444 4588899999999999999998864221     111112234


Q ss_pred             hHHHHHH-hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchH-
Q psy14164        184 FLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV-  260 (361)
Q Consensus       184 ~l~~Ll~-LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~-  260 (361)
                      ++|.|+. .|.+ ....++..|+.++..++....+.. .     .++.+...+.+.+++++..++.+|..++.. +... 
T Consensus       103 ~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~~-~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~  175 (278)
T 4ffb_C          103 WTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSIT-Q-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV  175 (278)
T ss_dssp             HHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSSH-H-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcHH-H-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence            6787775 4654 567899999998888775432221 1     135667788999999999999999988754 2111 


Q ss_pred             -HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        261 -KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       261 -~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                       ....+ ..+++.+..+|.+.   |..+|+.|..++..+...
T Consensus       176 ~~k~~l-~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          176 NVQTFL-PELLKHVPQLAGHG---DRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             CHHHHH-HHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHTC
T ss_pred             CchhHH-HHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHH
Confidence             11111 13455677888888   999999999999888753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.24  E-value=0.016  Score=62.29  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=100.3

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        142 GLPVLQPLLE-GSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       142 g~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                      .++.+++.|. +.++-+|..|+.++|-...  +|+.         ++..|+..+.++.+..||..|+.+|+-+..+.+..
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence            5777777664 6788888888888775443  3432         46667776666677889999999999988776532


Q ss_pred             HHHHHhhCcHHHHHH-hhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164        219 LKEFIKRDGFSVLLR-CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  297 (361)
Q Consensus       219 ~~~f~~~ggi~~Lv~-lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~  297 (361)
                               ++.++. ++++.+..+|..|++++.-++.+.+.       ..++..|..+++..   +..++..|+.+|..
T Consensus       613 ---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~---d~~Vrq~Ai~ALG~  673 (963)
T 4ady_A          613 ---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDP---VDFVRQAAMIALSM  673 (963)
T ss_dssp             ---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCC---CHHHHHHHHHHHHH
Confidence                     334444 45677999999999999999877653       13466777777777   99999999999999


Q ss_pred             HHhcChH
Q psy14164        298 LIKDSPE  304 (361)
Q Consensus       298 L~~~~~~  304 (361)
                      +.....+
T Consensus       674 Ig~gtnn  680 (963)
T 4ady_A          674 ILIQQTE  680 (963)
T ss_dssp             HSTTCCT
T ss_pred             HhcCCcc
Confidence            9977644

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.23  E-value=0.0011  Score=63.85  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=90.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      .+++.++|.+.++-||..|+.+...+...+|+.-     .+++..+-.++.+ .+..|...|+.+|..+.++...+...+
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kL  214 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKM  214 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHH
Confidence            4556668889999999999999999998888743     2678888888875 677888899998888887555332222


Q ss_pred             Hh---hCc-----------------------------HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        223 IK---RDG-----------------------------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       223 ~~---~gg-----------------------------i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      +.   .+|                             ++.|..+|++.+.-|.-.|+.+|.+|........     .-++
T Consensus       215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~-----~~a~  289 (355)
T 3tjz_B          215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKEL-----APAV  289 (355)
T ss_dssp             HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CC
T ss_pred             HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHH-----HHHH
Confidence            21   111                             1233444555667778888888777644222111     2234


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhcc
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRL  311 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~  311 (361)
                      ..|..+|.++   ++.+|=.|++.|..++...|..+..|+.
T Consensus       290 ~~L~~fLss~---d~niryvaLr~L~~l~~~~P~~v~~~n~  327 (355)
T 3tjz_B          290 SVLQLFCSSP---KAALRYAAVRTLNKVAMKHPSAVTACNL  327 (355)
T ss_dssp             CTHHHHHHSS---SSSSHHHHHHCC----------------
T ss_pred             HHHHHHHcCC---CchHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence            5666778777   8899999999999999999998888743

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.23  E-value=0.016  Score=62.37  Aligned_cols=100  Identities=9%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             HHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        143 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       143 ~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      +..|+. +.++.+..||..|+..||.+.-+++         ..++.++.+|.+..++.+|..|++||+-++.+++..   
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---  646 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---  646 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH---
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH---
Confidence            444555 3457888999999999999987775         357888887776678999999999999999887641   


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                          ..+..|..++++.+..|++.|++++.-+..+..
T Consensus       647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence                234577888888999999999999999887644

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.056  Score=47.32  Aligned_cols=200  Identities=13%  Similarity=0.183  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhh---cCccc----HHHHHHC---------CCH
Q psy14164         81 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ-KDICIGALDNLSDYI---CSIDY----ANDFLKM---------GGL  143 (361)
Q Consensus        81 ~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~-~~~~~~Al~~L~~lv---e~idn----a~~~~~~---------Gg~  143 (361)
                      +++||++.+..+--|-...-|.++.++.....+ .+....++..|..++   |.|+-    |..|..+         +.+
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV  109 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI  109 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence            678888888777433356778888887765544 344555556655553   33333    2222111         234


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      |.|..=..-.++.+|..-..+|+.++..||..--.     ++.-+..++.+ ++..=|..|+.-|+.+--+++.-.    
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~yv----  179 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKYV----  179 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHHHH----
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcC-CChHHHHHHHHHHHHHhccCcccc----
Confidence            44555556689999999999999999999986543     56678889985 777888889999998866544332    


Q ss_pred             hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                       ..-+|.|+.+|.+.+.-||..|+-.+.+|+.-+|..|..+.      ..+.-+...   +..++..+-.+|..|+-
T Consensus       180 -~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~---S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          180 -NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT---SSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             -GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS---CHHHHHHHHHHHHHHHH
T ss_pred             -CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc---HHHHHHHHHHHHHHHHH
Confidence             35578999999999999999999999999999888775542      334445665   77888888888887763

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.91  E-value=0.069  Score=51.81  Aligned_cols=158  Identities=17%  Similarity=0.280  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhh--cCcccHHHHHHCCCHHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhcCHHHHHHHHh-cC
Q psy14164        118 IGALDNLSDYI--CSIDYANDFLKMGGLPVLQPLLE-----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ-TD  183 (361)
Q Consensus       118 ~~Al~~L~~lv--e~idna~~~~~~Gg~~~Lv~LL~-----------s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g  183 (361)
                      ...|..|...+  ..+++-..|+ .+|+..|+..|.           ..+..+...+++||..+. |+...-+.+++ ..
T Consensus        85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~  162 (383)
T 3eg5_B           85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE  162 (383)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence            34556666544  3467888998 789999999875           234578889999999887 55555555555 47


Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hhCcHHHHHHhhcc-CCHHHHHHHHHHH
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE-EC-LKEFI----------KRDGFSVLLRCIQS-KKEKLVIKSCFLI  250 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~-~~-~~~f~----------~~ggi~~Lv~lL~s-~~~~v~~kA~~ll  250 (361)
                      ++..|...|.+ +...+++.|+--|+.+|.-.. .+ ...++          +..-+..++..|.+ .+...+..+..+|
T Consensus       163 ~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lI  241 (383)
T 3eg5_B          163 GILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI  241 (383)
T ss_dssp             HHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHH
Confidence            89999999986 677899999999998886442 22 22222          22347889999987 5889999999999


Q ss_pred             HHHhcCCc------hHHHHHHhCCcHHHHHHhccC
Q psy14164        251 ACLCTDNN------QVKQVLLSMGMVEQMCVLIDI  279 (361)
Q Consensus       251 ~~L~~~~~------~~~~~l~~~g~i~~Lv~lL~~  279 (361)
                      ..++.+.+      ..+..+...|+.+.+-. |+.
T Consensus       242 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          242 NALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence            99998754      35677888898877766 444

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.86  E-value=0.26  Score=46.78  Aligned_cols=172  Identities=12%  Similarity=0.138  Sum_probs=117.3

Q ss_pred             CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC---cHHHHHHhhccCCHHHHHHHHH
Q psy14164        172 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD---GFSVLLRCIQSKKEKLVIKSCF  248 (361)
Q Consensus       172 n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g---gi~~Lv~lL~s~~~~v~~kA~~  248 (361)
                      ++.+...++..+.+..+.+.+.. ++-.|...|...+-.+...+......|+..+   -+.....+|.+++.-+|+.+.-
T Consensus       153 ~e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          153 HEPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             SHHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            34445555666666666666665 5678888888888887777777777888766   3556678899999999999999


Q ss_pred             HHHHHhcC--CchH-HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC---hHHHHhhccCcchHHHHHHH
Q psy14164        249 LIACLCTD--NNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS---PEAQSLCRLEPLNLKFKLNF  322 (361)
Q Consensus       249 ll~~L~~~--~~~~-~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~---~~~~~~~~~~~l~l~~~Le~  322 (361)
                      +++.|+..  +..+ .+++-+..-+..++.+|++.   ...++-.|...+.-.+...   +.....-...+-.|...|.+
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~---sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~  308 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK  308 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc---hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            99999975  2233 34444556689999999998   8999999999988887643   22232222222233333333


Q ss_pred             HHHhhcChhhhHHHHHHHHHHHHHh
Q psy14164        323 IKEKHAGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       323 ~~~~l~~~~e~~~e~~~~~~il~~~  347 (361)
                      -...-...+.+.+|..|.-+.++..
T Consensus       309 f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          309 FQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             TTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHhC
Confidence            2221122457888888888887765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.81  E-value=0.023  Score=54.28  Aligned_cols=184  Identities=14%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      +....+++-|--+.++.+--..|++..|+..+...++.++.++-...+..|-.++..-.-|...+  ...+|-++..+.-
T Consensus       258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~  335 (619)
T 3c2g_A          258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhcc
Confidence            45677888888888887777889999999999999999999999999999887764332222111  3578999998876


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-------CCHHHHHHHHHHHHHHhcC-----------
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-------KKEKLVIKSCFLIACLCTD-----------  256 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-------~~~~v~~kA~~ll~~L~~~-----------  256 (361)
                      .++..|......-|||.+.|..+..+.-+..|+++.|-..+..       .+..-+..||..++|-+..           
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm  415 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT  415 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence            5677999999999999999999888888899999988776542       2556677788877765531           


Q ss_pred             --------C---chHHHHHHhCCcHHHHHHhccCCCCCC---hhHHHHHHHHHHHHHh
Q psy14164        257 --------N---NQVKQVLLSMGMVEQMCVLIDIEDALD---TEMNEHLLSALASLIK  300 (361)
Q Consensus       257 --------~---~~~~~~l~~~g~i~~Lv~lL~~~~~~d---~~~~e~al~aL~~L~~  300 (361)
                              +   ..+...+++..+++.|+.+|+.+.-+-   -++|-..++...-++.
T Consensus       416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence                    1   134456777789999999998762112   2566677776665554

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.75  E-value=0.52  Score=46.79  Aligned_cols=195  Identities=16%  Similarity=0.137  Sum_probs=120.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc----ccHHHHHHCCCHH-HHHH-hhcCCCHHHHHHHHHHHHHHhhcCHH
Q psy14164        101 EKIIKTLKENQDQKDICIGALDNLSDYICSI----DYANDFLKMGGLP-VLQP-LLEGSDPELRWRAAETVADIVQNNPF  174 (361)
Q Consensus       101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~i----dna~~~~~~Gg~~-~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~  174 (361)
                      +-.+..|.. ...++...-.|--+.+++...    ..+..|.+..... .+.. ++..++.-....|+.+++.+++.++.
T Consensus        80 ~~~l~lL~~-~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~  158 (480)
T 1ho8_A           80 IPLIHLLST-SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH  158 (480)
T ss_dssp             HHHHHHHHS-CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred             HHHHHHHhh-cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence            444455554 334455555566666766542    2234555554332 2333 44556666778888888888766655


Q ss_pred             HHHHHHhcChHH--HHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc--HHHHHHhhc----c---------
Q psy14164        175 SQNFIIQTDFLN--LLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG--FSVLLRCIQ----S---------  237 (361)
Q Consensus       175 ~q~~v~~~g~l~--~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg--i~~Lv~lL~----s---------  237 (361)
                      ..+.+  ...+.  -++..|.+..+...+--++.+++.|.| .+..+..|...+|  ++.++.++.    +         
T Consensus       159 ~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          159 NVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             CHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            33222  11222  345555542233456678999999999 4566777877665  455544332    1         


Q ss_pred             ---C-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH--HHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        238 ---K-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV--EQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       238 ---~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i--~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         + ...++=.+++++.-|.. .++..+.+.+.+++  ..|+..++..  .-.++...++.+|.+++...
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s--~KEKvvRv~la~l~Nll~~~  303 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTR  303 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSS
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhccc
Confidence               1 36778888998887766 45677788877754  5677777654  15788888999999999876

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.75  E-value=0.057  Score=53.59  Aligned_cols=125  Identities=12%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLL  232 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv  232 (361)
                      ++...+..|+..|......-|..++..     +..++.|... .+..||+.|+-.|..+|++  .....+     ..+|+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcED-ed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~  106 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCED-EDVSIRRQAIKELPQFATG--ENLPRV-----ADILT  106 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTC-SSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHH
Confidence            468999999999999999999998874     6678999985 6889999999999999997  333333     45889


Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        233 RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       233 ~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ++|++.+..-..-+-..+..|...++.        +.+..|...+.++   +..+||+++..|..-+..
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~---~e~~Rer~lkFi~~kl~~  164 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG---EDIVRERAIKFLSTKLKT  164 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS---CHHHHHHHHHHHHHHGGG
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc---chHHHHHHHHHHHHHHhh
Confidence            999998877777777777777776653        4566666666667   889999999988766654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.73  E-value=0.026  Score=50.89  Aligned_cols=145  Identities=18%  Similarity=0.292  Sum_probs=101.6

Q ss_pred             cCcccHHHHHHCCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhhcCHHHHHHHHh-cChHHHHHHhhccCC
Q psy14164        129 CSIDYANDFLKMGGLPVLQPLLEG----S-------DPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTSIEHDS  196 (361)
Q Consensus       129 e~idna~~~~~~Gg~~~Lv~LL~s----~-------~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g~l~~Ll~LL~~~~  196 (361)
                      ..+++-..| ..||+..|+.+|..    +       +..+...++.||..+. |+...-+.+++ .+++..|...|.+ +
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s-~  108 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-A  108 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCT-T
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCC-C
Confidence            356777888 57889888887752    1       4577888999999887 55555555554 4689999999986 6


Q ss_pred             CHHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCc-----
Q psy14164        197 NTTVQVKSLYAVSCLVRENE-EC-LKEFI----------KRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNN-----  258 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~-~~-~~~f~----------~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~-----  258 (361)
                      ...+|+.++--|+.+|.-.. .+ ...++          +..-+..+++.|.+ .+...+..+..+|..|+.+.+     
T Consensus       109 ~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R  188 (233)
T 2f31_A          109 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR  188 (233)
T ss_dssp             SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            77999999888887776432 12 22222          12246678888874 578889989999999988744     


Q ss_pred             -hHHHHHHhCCcHHHHHHh
Q psy14164        259 -QVKQVLLSMGMVEQMCVL  276 (361)
Q Consensus       259 -~~~~~l~~~g~i~~Lv~l  276 (361)
                       ..|..+...|+.+.+-.+
T Consensus       189 ~~lR~ef~~~Gl~~il~~l  207 (233)
T 2f31_A          189 VHIRSELMRLGLHQVLQEL  207 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHCChHHHHHHH
Confidence             346677777876655544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.65  E-value=0.006  Score=66.67  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF  228 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~----~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi  228 (361)
                      .+-..++.++|++|.++.+-..-+..-.=..++|.|+.++.+.    ....++..++|.||..++--. .-..++ ...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L-~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFL-RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHH-HHHH
Confidence            5789999999999999976433222211134788899988641    223455678899998765211 111222 3445


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh------CCcHHHHHH----hccCCCCCChhHHHHHHHHHHHH
Q psy14164        229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCV----LIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~------~g~i~~Lv~----lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                      ..|++.|..++++++..||+++.+|+..   .+..++.      ..+++.++.    .+..-   +..-+..+..++..+
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l---~~~~~~~lyeai~~v  616 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKACGII  616 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence            6677888778899999999999999974   2333331      123444443    33333   566778889999999


Q ss_pred             HhcCh
Q psy14164        299 IKDSP  303 (361)
Q Consensus       299 ~~~~~  303 (361)
                      ++..|
T Consensus       617 i~~~~  621 (1023)
T 4hat_C          617 ISEER  621 (1023)
T ss_dssp             HTTCC
T ss_pred             HHhCC
Confidence            88765

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=96.63  E-value=0.24  Score=48.01  Aligned_cols=149  Identities=18%  Similarity=0.286  Sum_probs=105.4

Q ss_pred             cCcccHHHHHHCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcCHHHHHHHHh-cChHHHHHHhhccCC
Q psy14164        129 CSIDYANDFLKMGGLPVLQPLLEG-----------SDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTSIEHDS  196 (361)
Q Consensus       129 e~idna~~~~~~Gg~~~Lv~LL~s-----------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g~l~~Ll~LL~~~~  196 (361)
                      ..+++-..|. .+|+..|+.+|..           .+..+...++.||..+. |+...-+.++. .+++..|...|.+ +
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s-~  112 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-A  112 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCT-T
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCC-C
Confidence            3567778886 6888888887742           14577888999999887 45544445554 4789999999986 5


Q ss_pred             CHHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCc-----
Q psy14164        197 NTTVQVKSLYAVSCLVRENE-EC-LKEFI----------KRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNN-----  258 (361)
Q Consensus       197 ~~~v~~~Al~ALS~l~r~~~-~~-~~~f~----------~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~-----  258 (361)
                      ...+++.++--|+.+|--.. .+ ...++          +..-+..|++.|. +.+...+..+..+|..|+.+.+     
T Consensus       113 ~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R  192 (386)
T 2bnx_A          113 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR  192 (386)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            67888888888887776432 12 22222          2234667888887 4578999999999999998755     


Q ss_pred             -hHHHHHHhCCcHHHHHHhccCC
Q psy14164        259 -QVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       259 -~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                       ..|..|...|+.+.+-.+=...
T Consensus       193 ~~LR~Ef~~~GL~~il~~Lr~~~  215 (386)
T 2bnx_A          193 VHIRSELMRLGLHQVLQELREIE  215 (386)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCChHHHHHHHhccC
Confidence             4577888889887766553333

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.55  E-value=0.038  Score=59.59  Aligned_cols=144  Identities=8%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc-----ChHHH----HHHhhccC--CCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        152 GSDPELRWRAAETVADIVQNNPFSQNFIIQT-----DFLNL----LLTSIEHD--SNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-----g~l~~----Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      +++...|..|..++|.++.+...+.. ....     ...+.    ++..|.+.  ..+-+|..|+|+|+.++...++   
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---  491 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---  491 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---
Confidence            56778999999999999864211100 0000     12222    23334432  2689999999999998875432   


Q ss_pred             HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-C------chH-HHHHHh--CCcHHHHHHhccCCCC--CChhHH
Q psy14164        221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-N------NQV-KQVLLS--MGMVEQMCVLIDIEDA--LDTEMN  288 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~------~~~-~~~l~~--~g~i~~Lv~lL~~~~~--~d~~~~  288 (361)
                      .+. ...++.++..|.+++.+|+..||+++.+|+.. +      +.. +..+..  ..++..|..++....+  ......
T Consensus       492 ~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~  570 (960)
T 1wa5_C          492 AQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN  570 (960)
T ss_dssp             HHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred             HHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence            222 34678888999888999999999999999874 1      111 111110  1345566666665300  001123


Q ss_pred             HHHHHHHHHHHh
Q psy14164        289 EHLLSALASLIK  300 (361)
Q Consensus       289 e~al~aL~~L~~  300 (361)
                      +.++.+|..++.
T Consensus       571 e~l~~al~~vv~  582 (960)
T 1wa5_C          571 EFLMRSIFRVLQ  582 (960)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            566666666654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.46  E-value=0.31  Score=45.63  Aligned_cols=229  Identities=14%  Similarity=0.149  Sum_probs=138.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhc-----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy14164         46 PSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM-----VNVGAELEKIIKTLKENQDQKDICIGA  120 (361)
Q Consensus        46 ~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~-----~~~~~~mk~~l~~L~~~~~~~~~~~~A  120 (361)
                      ..|++++++=-.|-....  ++     . ..+++++..-|.+.+..+.     ......+.-..+++   ....+.+..+
T Consensus        54 ~an~~~i~~KL~EfN~~~--~~-----~-~~Ls~~el~~L~~l~~~l~~~s~~~~~~~~l~~l~kil---~WP~~~~fPv  122 (304)
T 3ebb_A           54 QANPTQILGKLKELNGTA--PE-----E-KKLTEDDLILLEKILSLICNSSSEKPTVQQLQILWKAI---NCPEDIVFPA  122 (304)
T ss_dssp             CCCHHHHHHHHHHHHTTS--CG-----G-GCCCHHHHHHHHHHHHHHHTTCSSCCCHHHHHHHHHHH---TSCTTTCHHH
T ss_pred             ccCHHHHHHHHHHHHHcc--cc-----c-cCcCHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHH---cCCHHhHHHH
Confidence            456776666655543221  11     1 2599999999998887654     11122233333333   3556788899


Q ss_pred             HHHHHHhhcCcccHHHHHHCCCHHHHH----Hhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc--ChHHHHHHhhc
Q psy14164        121 LDNLSDYICSIDYANDFLKMGGLPVLQ----PLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIE  193 (361)
Q Consensus       121 l~~L~~lve~idna~~~~~~Gg~~~Lv----~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~--g~l~~Ll~LL~  193 (361)
                      +|-|.-++-+.+-+..|+..+.-..++    ..+. ...+..+..++++++|+..+. ..++.++..  .+++.+...+.
T Consensus       123 LDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~  201 (304)
T 3ebb_A          123 LDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKS  201 (304)
T ss_dssp             HHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGS
T ss_pred             HHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhc
Confidence            999988887666555565443333343    3332 245667999999999999754 455555542  24444555544


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        194 HDSNTTVQVKSLYAVSCLVRENEE--CLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       194 ~~~~~~v~~~Al~ALS~l~r~~~~--~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      . .+..+|..++..+-|++.....  ....-.  -.+..+..++.. .+....-+++-++.+|+..+.+.++.....|+-
T Consensus       202 ~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~  278 (304)
T 3ebb_A          202 G-SNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVD  278 (304)
T ss_dssp             S-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             C-CChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHH
Confidence            3 5778998888888777642110  001100  123344444543 488999999999999998877777777777777


Q ss_pred             HHHHHhccCCCCCChhHHHHH
Q psy14164        271 EQMCVLIDIEDALDTEMNEHL  291 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~a  291 (361)
                      ..+-......+  ..++.+.+
T Consensus       279 ~~v~~~~~~~~--~~kv~~~~  297 (304)
T 3ebb_A          279 SQIKKYSSVSE--PAKVSECC  297 (304)
T ss_dssp             HHGGGGGGCCS--SHHHHHHH
T ss_pred             HHHHHHHhCCC--chhHHHHH
Confidence            66666665531  44555543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.20  E-value=0.042  Score=58.81  Aligned_cols=141  Identities=13%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF  228 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~--~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi  228 (361)
                      .+++...+..|++++|.++.+-...     ....++.++..+..  +.++.+|..++|+|+..+...... ..++ ...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH-PVMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHH-HHHH
Confidence            5667889999999999999764321     12334444443321  135789999999999987632221 1343 4678


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCCchH-HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      +.|+..|++  .+|+..|++++.+|+...... ..++  ..++..|..++... ..+...++.++.++..++...+
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCC
Confidence            888888864  799999999999999643221 1111  13444555666643 1256789999999999987553

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.15  E-value=0.045  Score=58.79  Aligned_cols=138  Identities=9%  Similarity=0.075  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh---c-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI---E-HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF  228 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL---~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi  228 (361)
                      ++...++.|+.++|.++.+-+...     ...++.++.++   . ++.++.||..++|+|+.++....... .++ ...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence            566789999999999987654322     13344444433   2 23467999999999999875311111 122 2345


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +.|+..|.   .+|+..|++++.+|+........... ..++..+..++..+ ..+.+.++.++.++..++...
T Consensus       549 ~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          549 NLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHhC
Confidence            67777773   78999999999999965332221111 24566666777763 125788999999999998754

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.04  E-value=0.16  Score=46.32  Aligned_cols=195  Identities=14%  Similarity=0.180  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCccc-HHHH-HHCCCHHHHHHh-------hcCCC----HHHH-HHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDY-ANDF-LKMGGLPVLQPL-------LEGSD----PELR-WRAAET  164 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idn-a~~~-~~~Gg~~~Lv~L-------L~s~~----~~vr-~~Aa~~  164 (361)
                      .+.+.+..|.++    +.++.|+-+|..--|+... |--+ +.-|.+..|++=       |..+.    ..-| ..|+.+
T Consensus         4 ~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL   79 (268)
T 2fv2_A            4 KIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL   79 (268)
T ss_dssp             HHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence            344445555554    4688888888887766543 3333 344556666542       22111    1223 223333


Q ss_pred             HHHHhhcCHHHHHHHHhcChHHHHHHhhccC----CCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhccCC
Q psy14164        165 VADIVQNNPFSQNFIIQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQSKK  239 (361)
Q Consensus       165 Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~----~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s~~  239 (361)
                      +-.+| .+|+.+..|++++..-.|...|+..    +-+.+|-.++..|++++....+ ...-++....+|...+.|..++
T Consensus        80 lQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs  158 (268)
T 2fv2_A           80 LQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS  158 (268)
T ss_dssp             HHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            33344 6899999999998766666666542    2257999999999999986544 4444456788999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHH-------H-HhCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        240 EKLVIKSCFLIACLCTDNNQVKQV-------L-LSMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       240 ~~v~~kA~~ll~~L~~~~~~~~~~-------l-~~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      +-.|.-|.|.+..+...+. ...+       + .=..++..++.-| ..+   +..+..++.++-..|..+.
T Consensus       159 elSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~p---s~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDT-GLAYICQTYERFSHVAMILGKMVLQLSKEP---SARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHhccch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCH
Confidence            9999999999999987542 1111       1 1112444444433 344   7888899999988887654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.78  E-value=0.12  Score=51.48  Aligned_cols=140  Identities=11%  Similarity=0.108  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhcCc-cc----HHHHHHCCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhhc----------------
Q psy14164        116 ICIGALDNLSDYICSI-DY----ANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQN----------------  171 (361)
Q Consensus       116 ~~~~Al~~L~~lve~i-dn----a~~~~~~Gg~~~Lv~LL~s---~~~~vr~~Aa~~Lg~iaqn----------------  171 (361)
                      ..--++..|..+++.. ++    ...++-.|..++++..|..   +++++...--.+...+-++                
T Consensus       288 vvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s  367 (480)
T 1ho8_A          288 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS  367 (480)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            3344566777777643 11    1223322444667776654   6777776544443333222                


Q ss_pred             -----CHHHHH-HHH----------hcChHHHHHHhhcc---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        172 -----NPFSQN-FII----------QTDFLNLLLTSIEH---------DSNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       172 -----n~~~q~-~v~----------~~g~l~~Ll~LL~~---------~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                           .|..+. .|-          +..++..|+++|.+         +.++.+..-||+=|+..+|++|.+...+-+.|
T Consensus       368 G~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg  447 (480)
T 1ho8_A          368 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG  447 (480)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred             CCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC
Confidence                 222221 111          12378899999974         24678889999999999999999988888899


Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        227 GFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      |=..++++|.++|..||..|..++.-+..
T Consensus       448 ~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          448 GKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.68  E-value=0.76  Score=49.75  Aligned_cols=170  Identities=17%  Similarity=0.205  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHH-HC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFL-KM-GGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLL  188 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~-~~-Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~L  188 (361)
                      .=..|+.||..|..+++..  ...+. .+ ..+|.+..++-...++|+.+|..++..+|+  .|...      ...+|.|
T Consensus       147 kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~  218 (986)
T 2iw3_A          147 KWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSL  218 (986)
T ss_dssp             CHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHH
T ss_pred             chHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHH
Confidence            3589999999999999754  22221 11 236777777888999999999999999886  34332      2479999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHH
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVREN--EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVL  264 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~--~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l  264 (361)
                      ++.+.+ ++ . ..+++..||+.+--.  ....-+++    +|.|.+.|......++++++-.+-|+|.-  +|.....|
T Consensus       219 ~~~~~~-p~-~-~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f  291 (986)
T 2iw3_A          219 IQCIAD-PT-E-VPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF  291 (986)
T ss_dssp             HHHHHC-TT-H-HHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHhcC-hh-h-hHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh
Confidence            999986 33 3 567889998754321  12223333    68888899888999999999999999974  66555555


Q ss_pred             HhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       265 ~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      + -.++|.+-.....-  .++++|+.+-+|+..|..
T Consensus       292 ~-~~l~p~~~~~~~~~--~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          292 L-GKLLPGLKSNFATI--ADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             H-TTTHHHHHHHTTTC--CSHHHHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence            4 34566666555443  389999999999888854

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.64  E-value=0.99  Score=49.36  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=94.7

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHHhhc----CHHHHHHHHhcChHHHHHHh----hccCCCHHHHHHHHHHHHH
Q psy14164        143 LPVLQPLLEG----SDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTS----IEHDSNTTVQVKSLYAVSC  210 (361)
Q Consensus       143 ~~~Lv~LL~s----~~~~vr~~Aa~~Lg~iaqn----n~~~q~~v~~~g~l~~Ll~L----L~~~~~~~v~~~Al~ALS~  210 (361)
                      +..+..++.+    .++.+|..|.-++|+++..    ++.|..     ..++.+..+    +.. .+..-+..++.||+|
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDR-AKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhc-CChHHHHHHHHHhhc
Confidence            4445556665    4678899899999888742    222221     234555444    444 456778899999999


Q ss_pred             HhcCChhhHHHHHhhCcHHHHHHhhc-------cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCC
Q psy14164        211 LVRENEECLKEFIKRDGFSVLLRCIQ-------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDAL  283 (361)
Q Consensus       211 l~r~~~~~~~~f~~~ggi~~Lv~lL~-------s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~  283 (361)
                      +-  ++.         .++.|..++.       +...++|..|++++..+....|...+        +.+..++.+. ..
T Consensus       467 ~g--~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~-~e  526 (1056)
T 1lsh_A          467 AG--QPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNV-AI  526 (1056)
T ss_dssp             HT--CGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCT-TS
T ss_pred             cC--Chh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCC-CC
Confidence            83  453         3455555553       23679999999999999876654332        2344555322 12


Q ss_pred             ChhHHHHHHHHHHHHHhcChHH--H-----HhhccCcchHHHHHHHHHHhhcC
Q psy14164        284 DTEMNEHLLSALASLIKDSPEA--Q-----SLCRLEPLNLKFKLNFIKEKHAG  329 (361)
Q Consensus       284 d~~~~e~al~aL~~L~~~~~~~--~-----~~~~~~~l~l~~~Le~~~~~l~~  329 (361)
                      +.++|..|+..|   ...+|..  +     ..-..+.......+..+++.+.+
T Consensus       527 ~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          527 KSELRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             CHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence            788888877766   3333421  1     11233444555666666766654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.49  E-value=0.069  Score=58.13  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164        153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF  228 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~----~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi  228 (361)
                      .+...++.|++++|.++.........-+-..+++.|+.+...    ++.+.++..++|+++..++-.... ..++ ...+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l-~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL-RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH-HHHH
Confidence            567889999999999986543321111111245555554332    123345557899999776421111 1233 2456


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh----------CCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS----------MGMVEQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~----------~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                      +.|+..|.+++.+|+..||+++.+|+...   +..+..          ..++..+..++..-   +.+-...+..++..+
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~---~~~~~~~~~eai~~i  616 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKACGII  616 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence            77888888889999999999999999742   222220          12333344444444   455567778888888


Q ss_pred             HhcCh
Q psy14164        299 IKDSP  303 (361)
Q Consensus       299 ~~~~~  303 (361)
                      +...+
T Consensus       617 i~~~~  621 (1049)
T 3m1i_C          617 ISEER  621 (1049)
T ss_dssp             HHTCC
T ss_pred             HHcCC
Confidence            76544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.47  E-value=0.17  Score=54.24  Aligned_cols=131  Identities=14%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh---hc--CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL---LE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L---L~--s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      ..+..|+-.|..+.+.......    ..++.++.+   |.  .+++.||..|+|+||..+.--....+.+  ..+++.|+
T Consensus       479 ~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~  552 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLV  552 (971)
T ss_dssp             HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHH
Confidence            5677777777776665432211    223444433   23  2489999999999999874211111111  13667777


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcC
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~  256 (361)
                      ..|.    +.|+..|++|+.++++........++ ...+..|..++.++  +.+.+..+..+|..++..
T Consensus       553 ~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          553 RGLN----SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH----SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhC----hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            7773    36899999999999987765554444 34566777777773  688999999999988875

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.32  E-value=0.45  Score=50.78  Aligned_cols=177  Identities=15%  Similarity=0.121  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL---EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL---~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      +-..+..++-.|..+.+......    ..-++.++..|   .++++.||..++|+||..+.--....+ ++ ..+++.|+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~  535 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVL  535 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHH
Confidence            34567777777777665543210    01133444432   346889999999999998753221122 23 36888899


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCc-hHHHHHHh
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNN-QVKQVLLS  266 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~-~~~~~l~~  266 (361)
                      ..|.+   +.|+..|++||.++++........++ ...+..|..++.+.  +.+.+..+..++..++..-+ +.....+ 
T Consensus       536 ~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-  610 (963)
T 2x19_B          536 HALGN---PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-  610 (963)
T ss_dssp             HHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred             HHhCC---chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence            88864   57999999999999986554322222 23344555666652  67888888899999887543 3332222 


Q ss_pred             CCcHHHHHHhccC--CCCCChhHHH---HHHHHHHHHHh
Q psy14164        267 MGMVEQMCVLIDI--EDALDTEMNE---HLLSALASLIK  300 (361)
Q Consensus       267 ~g~i~~Lv~lL~~--~~~~d~~~~e---~al~aL~~L~~  300 (361)
                      ..+++++...+..  ....+.+.+.   .++.+|..+..
T Consensus       611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~  649 (963)
T 2x19_B          611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT  649 (963)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2345555544431  0001333433   45555555554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.23  E-value=1.2  Score=40.30  Aligned_cols=146  Identities=16%  Similarity=0.102  Sum_probs=97.7

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH--H-HHhcCh-HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh---
Q psy14164        146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQN--F-IIQTDF-LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC---  218 (361)
Q Consensus       146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~--~-v~~~g~-l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~---  218 (361)
                      |-.-|.|.+-..|..|..-|..+.++++....  . +...+- .+.+-+.+. |.+..+..+++.+|..++......   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55778999999999999999998887654321  1 112233 344445665 678899999999999998753321   


Q ss_pred             --HHHHHhhCcHHHHHH-hhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        219 --LKEFIKRDGFSVLLR-CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       219 --~~~f~~~ggi~~Lv~-lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                        .....-...++.|+. +|.+...+++..|..++..++...... .     .+++.++..+.+.   ++.++..++..|
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K---npkv~~~~l~~l  163 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK---LPKLIAAAANCV  163 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS---CHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc---CHHHHHHHHHHH
Confidence              111112344666664 688888999999988888776542111 1     1356677778887   999999999999


Q ss_pred             HHHHhc
Q psy14164        296 ASLIKD  301 (361)
Q Consensus       296 ~~L~~~  301 (361)
                      ..++..
T Consensus       164 ~~~l~~  169 (278)
T 4ffb_C          164 YELMAA  169 (278)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888754

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.15  E-value=0.71  Score=42.13  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCC-----HHHHHHHHHH
Q psy14164         96 VGAELEKIIKTLKENQ---DQK---DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSD-----PELRWRAAET  164 (361)
Q Consensus        96 ~~~~mk~~l~~L~~~~---~~~---~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~-----~~vr~~Aa~~  164 (361)
                      -+-++++++.+...-+   -+.   ...-.||.-|..+..+.+....|.+....-.|..+|+..+     .-+|-.++.+
T Consensus        46 ia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGV  125 (268)
T 2fv2_A           46 IAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGV  125 (268)
T ss_dssp             HHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHH
Confidence            3567788877764332   222   3346777777888888999999999987777788886533     5799999999


Q ss_pred             HHHHhh-cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH-------HHHhh-CcHHHHHH-h
Q psy14164        165 VADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK-------EFIKR-DGFSVLLR-C  234 (361)
Q Consensus       165 Lg~iaq-nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~-------~f~~~-ggi~~Lv~-l  234 (361)
                      ||.+++ +++++-..+++.+.+|..++.+..+ ++--|.-|.+-+..|.-+ ..+..       .|... ..+..++. +
T Consensus       126 IgaLvK~dd~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l  203 (268)
T 2fv2_A          126 IGALVKTDEQEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQL  203 (268)
T ss_dssp             HHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHH
Confidence            999997 4677888889999999999999984 668888899998888753 22322       22221 12333333 3


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164        235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL  265 (361)
Q Consensus       235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~  265 (361)
                      ...++.++-+.+..+-..|+. ++..++.+.
T Consensus       204 ~~~ps~RLLKhiircYlRLsd-n~rar~aL~  233 (268)
T 2fv2_A          204 SKEPSARLLKHVVRCYLRLSD-NPRAREALR  233 (268)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             hcCCChHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            345678888888877777654 455555544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.09  E-value=4.7  Score=43.66  Aligned_cols=133  Identities=15%  Similarity=0.124  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC
Q psy14164        118 IGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD  195 (361)
Q Consensus       118 ~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~  195 (361)
                      +.|+..+..+++....+  -.-.-.+.++.++..+......||..|..++..++..-+...  +  ..++|.|+..|.+.
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~  145 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVET  145 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccc
Confidence            77788888777544321  111223568888888888889999999999888887643322  1  34799999999865


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      ..=..+..|+..|..++...+.+ -...-...+|.+.+++.+.-..|+..|.-++..+|.
T Consensus       146 ~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          146 NKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred             cchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence            45588999999999999766543 333335689999999999999999998888888875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.02  E-value=0.83  Score=49.81  Aligned_cols=168  Identities=10%  Similarity=-0.014  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhc-CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcC---
Q psy14164         83 GFLLDALNSMM-VNVGAELEKIIKTLK----ENQDQKDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEG---  152 (361)
Q Consensus        83 ~~L~eal~~~~-~~~~~~mk~~l~~L~----~~~~~~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s---  152 (361)
                      +-+++.|-.+. ....+.++..+..|.    +.+.+=..++.++..+..+.+.++..  +.+.. ..++.|+.++.+   
T Consensus       431 ~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          431 KSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhcccc
Confidence            33456555544 232344444444442    22344578888888888888776532  33332 357888888864   


Q ss_pred             --CCHHHHHHHHHHHHHHhh---cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH------
Q psy14164        153 --SDPELRWRAAETVADIVQ---NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE------  221 (361)
Q Consensus       153 --~~~~vr~~Aa~~Lg~iaq---nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~------  221 (361)
                        +...||..++|+||..+.   .+|..    + ..++..|+.-+. ++.+.++..|++|+.++|..+......      
T Consensus       510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~----L-~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          510 KDNKAVVASDIMYVVGQYPRFLKAHWNF----L-RTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCHHH----H-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHH----H-HHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              345577788999998654   23321    1 123444555454 345789999999999999854432210      


Q ss_pred             --HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164        222 --FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       222 --f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                        |+ ...+..+..++..-+.+-+..+.-+++.++...+
T Consensus       584 ~p~~-~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence              21 1223334444444577888888999999998744

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.99  E-value=0.97  Score=48.51  Aligned_cols=191  Identities=12%  Similarity=0.159  Sum_probs=117.1

Q ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-------HH
Q psy14164        103 IIKTLKENQ-DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-------PF  174 (361)
Q Consensus       103 ~l~~L~~~~-~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-------~~  174 (361)
                      .+..|.++. ...-.|..|++.|..+.+.+. ...+..  .++.++..|.+++..||..|+++|.+++...       +.
T Consensus       460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~  536 (960)
T 1wa5_C          460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI  536 (960)
T ss_dssp             THHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred             hHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence            444555532 145678899999999988663 333333  4788888888889999999999999998741       11


Q ss_pred             -HHHHHHh--cChHHHHHHhhccCC--CHH--HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh----cc-CCHHH
Q psy14164        175 -SQNFIIQ--TDFLNLLLTSIEHDS--NTT--VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI----QS-KKEKL  242 (361)
Q Consensus       175 -~q~~v~~--~g~l~~Ll~LL~~~~--~~~--v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL----~s-~~~~v  242 (361)
                       .+..+..  ...++.|+.++....  ...  ....++.||+.++.........++. ..++.|+..+    ++ .+..+
T Consensus       537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~  615 (960)
T 1wa5_C          537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRF  615 (960)
T ss_dssp             SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHH
T ss_pred             ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHH
Confidence             1222211  235666777777531  011  2345667776665432222222221 1234444433    23 36677


Q ss_pred             HHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        243 VIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       243 ~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      +..++-+|+.++.. +++....+ ...+++.+...|...   ..++.+.++..+..++..
T Consensus       616 ~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~---~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          616 THYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSED---IQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTT---CTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhh---hHhhHHHHHHHHHHHHHh
Confidence            77888899988876 44443333 345678888888876   667888888888777754

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.94  E-value=1.4  Score=40.24  Aligned_cols=130  Identities=10%  Similarity=0.086  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      ++++|+..|....+++-+.|.. -+-+  -++.++.+-..++.+||...+..|+.++...++..     ..+++.|..|+
T Consensus        28 ~~~~kl~~L~qa~el~~~~dp~-ll~~--~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll   99 (257)
T 3gs3_A           28 SPSTKCELLAKVQETVLGSCAE-LAEE--FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLL   99 (257)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTGG-GHHH--HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHccCHh-HHHH--HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            4479999999999977654432 2222  36777787777899999999999999997665433     34678888899


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc--------H-------HHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG--------F-------SVLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg--------i-------~~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      .. .++.|.++++-+.+++-   +..++.+...++        |       ..++..+.+.+..+|..+.-++..++
T Consensus       100 ~d-~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          100 RD-NSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TC-SCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            84 68899999999999983   445555554433        1       24556677788999999887777655

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.86  E-value=0.93  Score=49.15  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcC
Q psy14164         96 VGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS---DPELRWRAAETVADIVQNN  172 (361)
Q Consensus        96 ~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~---~~~vr~~Aa~~Lg~iaqnn  172 (361)
                      +++.+.+++....++..+.+.|..|.+-|..+=++.         ++|.....+|.++   +..+|..|+.+|-+..+.-
T Consensus         4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l   74 (980)
T 3ibv_A            4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREW   74 (980)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            466778899877787777888999988888776543         3788888988664   7899999999999988743


Q ss_pred             HHH----HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164        173 PFS----QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       173 ~~~----q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~  214 (361)
                      |..    +...++.-++..+.+.-....+..+|.|.+.+|+.++..
T Consensus        75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~  120 (980)
T 3ibv_A           75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ  120 (980)
T ss_dssp             CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            444    555556666666665211123468999999999999864

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.37  E-value=1.8  Score=40.35  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=101.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh----HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF----LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC  218 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~----l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~  218 (361)
                      +..+.+++ +=..+.+-+++.++.-++- +|.+...+.+.+.    +..++..+.....+..+--++..++|+..+ +..
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g  181 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG  181 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence            45666665 4445677788888877765 5666655544322    333445555444567789999999999885 445


Q ss_pred             HHHHHhh--CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC---chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHH
Q psy14164        219 LKEFIKR--DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  293 (361)
Q Consensus       219 ~~~f~~~--ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~---~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~  293 (361)
                      .+.+...  -.++.+..++.+.+..+|.-++.++.|++...   ... +..  ..++..+..++...  .|.+..-.++-
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~--~~ll~~l~~il~~~--~d~EalyR~Lv  256 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGK--AQCLSLISTILEVV--QDLEATFRLLV  256 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHH--HHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHH--HHHHHHHHHHHhcc--CCHHHHHHHHH
Confidence            4444432  24455566666678999999999999998631   111 111  11444555555532  37888888999


Q ss_pred             HHHHHHhcChHHHHhhc
Q psy14164        294 ALASLIKDSPEAQSLCR  310 (361)
Q Consensus       294 aL~~L~~~~~~~~~~~~  310 (361)
                      ||.+++...++..+.|+
T Consensus       257 ALGtL~~~~~~~~~lak  273 (304)
T 3ebb_A          257 ALGTLISDDSNAVQLAK  273 (304)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCChhHHHHHH
Confidence            99999987766555553

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=94.27  E-value=0.17  Score=43.46  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhc
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r  213 (361)
                      +..|.+-|+|.++.++..|+.+|-.+++|. +.++..|.+...+..|++++..     ..+..|+.+++..|-.-..
T Consensus        52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            566777889999999999999999999995 6678888888999999999963     2457899999888876544

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=94.24  E-value=0.27  Score=41.74  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      +..|.+-|.+.++.++..|+.+|-.+++| .+..+..|.....+..|++++....++.|+.+++..|-.-.
T Consensus        54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            55666778899999999999999999999 57788888888899999999985567789999888776543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=93.70  E-value=0.52  Score=39.34  Aligned_cols=72  Identities=10%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhc
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r  213 (361)
                      ++..|.+-|+|.++.++..|+.+|-.+++| .+.++..|.+...+..|++++..     ..+..|+.+++..|-.-..
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            356677778899999999999999999999 57788888889999999999974     2467999998877776543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=93.61  E-value=2.3  Score=38.23  Aligned_cols=146  Identities=8%  Similarity=0.004  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhh-cCHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQ-NNPFSQ  176 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaq-nn~~~q  176 (361)
                      .+......|.+ ++..+.+.-|...|..+ .  ....      .++.+.. +-..++=.||..++.+++.++. .+|.  
T Consensus        71 ~~~~la~~L~~-~~~deVR~~Av~lLg~~-~--~~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           71 YIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-S--KDKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHHT-CSSHHHHHHHHHHHHHT-T--TSHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHHh-CcchHHHHHHHHHHHhc-c--CcHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            33444444444 24457888888766665 2  1111      2555555 4456778999999999999885 4443  


Q ss_pred             HHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        177 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       177 ~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                            ..++.+.....+ .+..||+.|+-.+---+.. + ..+. .-.-.++.|..+..+++.-||+-.+|.|..+...
T Consensus       139 ------~~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~-~~k~-dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 ------KALPIIDEWLKS-SNLHTRRAATEGLRIWTNR-P-YFKE-NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             ------TTHHHHHHHHHC-SSHHHHHHHHHHTCSGGGS-T-TTTT-CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHhcC-CCHHHHHHHHHhhHHHhcc-c-hhhc-CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence                  156777777775 6789998887665321211 1 0000 0011456666677778999999999999999999


Q ss_pred             CchHHHHHHh
Q psy14164        257 NNQVKQVLLS  266 (361)
Q Consensus       257 ~~~~~~~l~~  266 (361)
                      +|+....+++
T Consensus       209 ~Pd~V~~~~~  218 (240)
T 3l9t_A          209 FPDLVKIELK  218 (240)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9987666654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=93.55  E-value=0.83  Score=41.18  Aligned_cols=141  Identities=11%  Similarity=0.053  Sum_probs=95.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc-CChhhHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR-ENEECLKEF  222 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r-~~~~~~~~f  222 (361)
                      +....|.+++..++|..|+.+||.. ...         ...++.+...+..+..=.||.-++.+++.++. -.+..    
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----  139 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----  139 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence            3444577889999999999999977 211         22567777756666677899999999998884 23321    


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                          .++.+...+.+++.-||+-|.-.+.--+.. +..+...  .-+++.|-.+...+   +--+|..+.++|.-+++.+
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp--~~ll~iL~~L~~D~---s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP--NEAIRRIADLKEDV---SEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH--HHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH--HHHHHHHHHhcCCh---HHHHHHHHHHHHHHHhhhC
Confidence                456678888999999999888765432221 1111000  01244444444444   6788999999999999999


Q ss_pred             hHHHHh
Q psy14164        303 PEAQSL  308 (361)
Q Consensus       303 ~~~~~~  308 (361)
                      |+.+..
T Consensus       210 Pd~V~~  215 (240)
T 3l9t_A          210 PDLVKI  215 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=93.48  E-value=0.62  Score=50.60  Aligned_cols=170  Identities=11%  Similarity=0.004  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhc-CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcC--
Q psy14164         82 RGFLLDALNSMM-VNVGAELEKIIKTLK----ENQDQKDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEG--  152 (361)
Q Consensus        82 ~~~L~eal~~~~-~~~~~~mk~~l~~L~----~~~~~~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s--  152 (361)
                      |+-.++.|..+. ....+.+.-.+..+.    +...+-..+..|+-.+..+.+.....  +.+. -..++.|+.+...  
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~  508 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKR  508 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhc
Confidence            444556665554 222223333333332    22234467888888888776654322  2211 1124444443332  


Q ss_pred             ---CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH--------H
Q psy14164        153 ---SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK--------E  221 (361)
Q Consensus       153 ---~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~--------~  221 (361)
                         +.+-++..++|++|..+.--....+. + ..+++.|+..+.+ +++.|+..|++|+.+++..+.....        .
T Consensus       509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l-~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p  585 (1049)
T 3m1i_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Confidence               34566667999999765321111122 2 2367778887775 5789999999999999986443221        1


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~  256 (361)
                      ++ ...+..+..++..-+.+-.....-++..++..
T Consensus       586 ~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~  619 (1049)
T 3m1i_C          586 FI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1049)
T ss_dssp             HH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence            11 12233334445544555555666666666654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=93.40  E-value=0.49  Score=42.32  Aligned_cols=71  Identities=14%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      ++..|.+-|.+.++.++..|+.+|..+++| .+..+..|.....+..|.+++....+..|+.+++..|-.-.
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  117 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA  117 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            356677778899999999999999999998 44477778888888889999877677899999988887654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.35  E-value=0.42  Score=43.94  Aligned_cols=107  Identities=9%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      +|.|+.=|.++...||..+-.++..+..--|.       ..+++.++.-+.+ .+.-+|..++..|++++..+...    
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~----  201 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS----  201 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC----
Confidence            68888888889999999999999887643221       2367778887776 67899999999999998644332    


Q ss_pred             HhhCcH---HHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHH
Q psy14164        223 IKRDGF---SVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQ  262 (361)
Q Consensus       223 ~~~ggi---~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~  262 (361)
                       ...++   +.+..++.+.|..||..|..++..+... ++.+..
T Consensus       202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k  244 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK  244 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence             24578   9999999999999999999998876654 444443

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=93.11  E-value=0.56  Score=41.62  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      +..|.+-|.+.++.++..|+.+|..++.|. +..+..|.+...+..|++++.+..+..|+.+++..|-.-.
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            556667788999999999999999999996 5577788888899999999886667889988887666544

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=92.83  E-value=7.2  Score=37.59  Aligned_cols=178  Identities=15%  Similarity=0.150  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      ++|+..|..+.+++-+.|. .-+  -.-++.++.+-..++.+||...+..|+.++....+..     ..+++.|..||..
T Consensus        40 ~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d  111 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRD  111 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcC
Confidence            5788888888887544332 111  2358889998888999999999999999987554432     2367788888874


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc--------H-------HHHHHhhccCCHHHHHHHHHHHHHHhc--C-
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG--------F-------SVLLRCIQSKKEKLVIKSCFLIACLCT--D-  256 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg--------i-------~~Lv~lL~s~~~~v~~kA~~ll~~L~~--~-  256 (361)
                       .++.|.++++.+.+++   ++.+++.++..++        |       ..++..+.+.+.-+|..+.-++-.++.  . 
T Consensus       112 -~d~~V~K~~I~~~tsl---Ypl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~  187 (386)
T 3o2t_A          112 -ENVNVVKKAILTMTQL---YKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP  187 (386)
T ss_dssp             -SSHHHHHHHHHHHHHH---HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred             -CCHHHHHHHHHHHHHH---HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence             6889999999999998   3455555554433        2       245566778899999999987776651  1 


Q ss_pred             ---Cch---------------------HHHHHH--hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        257 ---NNQ---------------------VKQVLL--SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       257 ---~~~---------------------~~~~l~--~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                         ++.                     ....+.  -.+.+..|+..|..+ ..+......++.+|..|+..-|..
T Consensus       188 ~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~-~iss~~l~a~lnsLa~Iak~RP~~  261 (386)
T 3o2t_A          188 RMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHP-AISSINLTTALGSLANIARQRPMF  261 (386)
T ss_dssp             CCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             CCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccc-ccccHHHHHHHHHHHHHHHhcHHH
Confidence               100                     012222  235688888888864 113445566788888888877753

>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A

Probab=92.70  E-value=2.5  Score=41.23  Aligned_cols=148  Identities=10%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      .+..++|-|..++-....+..      +..++. .+.+..+..+..++++++|+-++...-++.+........++.++..
T Consensus       242 ~~FPaLDLLRl~v~~p~~~~~------l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~  315 (425)
T 3pst_A          242 IKTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT  315 (425)
T ss_dssp             CCHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred             cccHHHHHHHHHHcCCchHHH------HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence            367788888888876665433      222332 3446688999999999999998766455555443345666665532


Q ss_pred             C-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc---------cCCHHHHHHHHHHHHHHhcCCc
Q psy14164        195 D-------SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNN  258 (361)
Q Consensus       195 ~-------~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~---------s~~~~v~~kA~~ll~~L~~~~~  258 (361)
                      .       .+..++..++..+=|++.-....   -.+......+.+++.         ..+....-+++-++.+|+...+
T Consensus       316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~  392 (425)
T 3pst_A          316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP  392 (425)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---CSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred             HhhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence            1       12356665555555554311100   001223445666665         2477888889999999987666


Q ss_pred             hHHHHHHhCCcHHH
Q psy14164        259 QVKQVLLSMGMVEQ  272 (361)
Q Consensus       259 ~~~~~l~~~g~i~~  272 (361)
                      ..++....-..+..
T Consensus       393 ~~~~~a~~~~~~~~  406 (425)
T 3pst_A          393 TLRQFANSVTWLAN  406 (425)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHhcCHHHHHH
Confidence            55554443333333

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.68  E-value=1.7  Score=47.45  Aligned_cols=122  Identities=18%  Similarity=0.279  Sum_probs=84.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc------CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164        150 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRENEECLKEFI  223 (361)
Q Consensus       150 L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~------~~~~~v~~~Al~ALS~l~r~~~~~~~~f~  223 (361)
                      +...+.+-+..++++|||+-.  |         ..++.|.+++..      +....+|..|+|||..+....|.....+ 
T Consensus       449 ~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i-  516 (1056)
T 1lsh_A          449 SDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI-  516 (1056)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH-
T ss_pred             HhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH-
Confidence            345667777888888888853  3         367788888752      1245788999999999988766554444 


Q ss_pred             hhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        224 KRDGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       224 ~~ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                             +..++.  ..+..+|..|+.++-   ...|.       ...+..+...|..+  .+.++.--+...|.+++..
T Consensus       517 -------l~~i~~n~~e~~EvRiaA~~~Lm---~t~P~-------~~~l~~ia~~l~~E--~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          517 -------VLPIFLNVAIKSELRIRSCIVFF---ESKPS-------VALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             -------HHHHHHCTTSCHHHHHHHHHHHH---HTCCC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHhcCCCCChHHHHHHHHHHH---HHCcC-------HHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHhc
Confidence                   366663  348899988887764   22332       13466677777763  2778888888888888876


Q ss_pred             C
Q psy14164        302 S  302 (361)
Q Consensus       302 ~  302 (361)
                      .
T Consensus       578 ~  578 (1056)
T 1lsh_A          578 S  578 (1056)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=92.43  E-value=0.14  Score=51.89  Aligned_cols=159  Identities=11%  Similarity=0.110  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  194 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~  194 (361)
                      ..++.+.+.|.-+ -..+..     ...+..++..+..+.-++|..++-.|..+   .+...+   =.++++.++.-|..
T Consensus       243 PVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~GL~D  310 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSLLSS  310 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHHTTC
T ss_pred             ehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhhcCC
Confidence            7788888888777 454443     34566666666888999999999999887   121111   13567888888885


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164        195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  272 (361)
Q Consensus       195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~  272 (361)
                       .++.||.-|+.+|..++  .+.....++     ..+-.+|..  +-.........+++.|++..+..   -.....|+.
T Consensus       311 -~DDDVRAVAAetLiPIA--~p~~l~~LL-----~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPR  379 (800)
T 3oc3_A          311 -PDEDIKLLSAELLCHFP--ITDSLDLVL-----EKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKD  379 (800)
T ss_dssp             -SSHHHHHHHHHHHTTSC--CSSTHHHHH-----HHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGG
T ss_pred             -cccHHHHHHHHHhhhhc--chhhHHHHH-----HHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHH
Confidence             67899999999999998  333333332     333344332  21233344566777777644211   112378999


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      |-.+|+++   -+.+|..++.+|..++
T Consensus       380 L~PFLRHt---ITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          380 IFPCFTSP---VPEVRTSILNMVKNLS  403 (800)
T ss_dssp             TGGGGTCS---SHHHHHHHHHHTTTCC
T ss_pred             HHhhhcCC---cHHHHHHHHHHHHHHH
Confidence            99999999   9999999999998877

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=92.38  E-value=1.2  Score=37.10  Aligned_cols=71  Identities=13%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhc
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r  213 (361)
                      +..|.+-|.|.++.++..|+.+|-.+++|. +.++..|.....+..|++++..     ..+..|+.+.+..|-.-..
T Consensus        50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            556667788999999999999999999985 4567778888899999999963     2567899999888877654

>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}

Probab=92.19  E-value=0.76  Score=41.81  Aligned_cols=172  Identities=9%  Similarity=0.071  Sum_probs=101.8

Q ss_pred             CCCHHhHHHHHHHHHhhcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCC
Q psy14164         76 SMNEANRGFLLDALNSMMVNVGAE-LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGS  153 (361)
Q Consensus        76 ~~s~e~~~~L~eal~~~~~~~~~~-mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~  153 (361)
                      .+++|+..-+..++..+. +..+. ..-+++++..  ..  .+..++|-+.-++-+...+..+.      .++. .+.+.
T Consensus        34 ~ls~~el~~l~~~l~~l~-~~~~~~~~~~~ki~~~--WP--~~fP~lDllRl~~~~~~~~~~l~------~~l~~~~~~~  102 (253)
T 3gae_A           34 TFDDEILAQIGGALHDID-ESWELLLSFANTIRSN--WE--IKTPAYDIVRLIVKKLPYSSDIK------DYIEEGLGNK  102 (253)
T ss_dssp             CSCHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHH--CS--CCHHHHHHHHHHGGGCSCGGGGH------HHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHh--CC--ccchHHHHHHHHHcCCchHHHHH------HHHHHhcCCC
Confidence            688998888887775443 11222 2223344433  22  57889999998887766554332      2332 34466


Q ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164        154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-------SNTTVQVKSLYAVSCLVRENEECLKEFIKRD  226 (361)
Q Consensus       154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-------~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g  226 (361)
                      ++..+..++++++|+-.+....++.+........++..+...       .+..+|..++..+-|++........   +..
T Consensus       103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e  179 (253)
T 3gae_A          103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE  179 (253)
T ss_dssp             SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTT
T ss_pred             chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHH
Confidence            789999999999999987664566665543445555544221       2446777777666666542110000   122


Q ss_pred             cHHHHHHhhcc---------CCHHHHHHHHHHHHHHhcCCchHH
Q psy14164        227 GFSVLLRCIQS---------KKEKLVIKSCFLIACLCTDNNQVK  261 (361)
Q Consensus       227 gi~~Lv~lL~s---------~~~~v~~kA~~ll~~L~~~~~~~~  261 (361)
                      ....+++++..         .+....-+++-++.+|+..++..+
T Consensus       180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~  223 (253)
T 3gae_A          180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR  223 (253)
T ss_dssp             HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred             HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence            34455555542         366777888888888886555444

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=92.00  E-value=1.1  Score=37.67  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHH-HHHhhcc--CCCHHHHHHHHHHHHHHh
Q psy14164        143 LPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNL-LLTSIEH--DSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       143 ~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~-Ll~LL~~--~~~~~v~~~Al~ALS~l~  212 (361)
                      +..|.+-|+ +.++.++..|+.+|-.+++|. +..+..+.+...+.. |++++..  .++..|+.+++..|-.-.
T Consensus        55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~  129 (157)
T 1elk_A           55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA  129 (157)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            556667776 489999999999999999996 888888888889998 8898852  245689999887776643

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.98  E-value=2.4  Score=39.60  Aligned_cols=99  Identities=12%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhhC--cHHH----HHHhhcc---CCHHHHHHHHHHHHHHhcCCchHHHHHHh
Q psy14164        196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRD--GFSV----LLRCIQS---KKEKLVIKSCFLIACLCTDNNQVKQVLLS  266 (361)
Q Consensus       196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g--gi~~----Lv~lL~s---~~~~v~~kA~~ll~~L~~~~~~~~~~l~~  266 (361)
                      .+..++..|...|++..|+||++...+...-  -+..    |..++..   ....++++-+.+|..|+.....+.    .
T Consensus        82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~----~  157 (315)
T 3qml_C           82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP----I  157 (315)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC------
T ss_pred             CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh----h
Confidence            5678999999999999999999988776532  1222    2222222   345777777888888887643231    2


Q ss_pred             CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                       ..+..|.+++... ..+.+++.+++..+..+..
T Consensus       158 -~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          158 -YSTVVLQNVYERN-NKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             -CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence             3445566665533 2378999999998888774

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.88  E-value=0.92  Score=37.36  Aligned_cols=70  Identities=14%  Similarity=0.099  Sum_probs=57.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~  212 (361)
                      ++..|.+-|.+.++.++..|+.+|-.+++|. +..+..+.....+..|++++.. .++.|+.+.+..|-.-.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence            3566667788999999999999999999985 6677777777888888898875 57799999888777654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.58  E-value=0.11  Score=47.28  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=14.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAET  164 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~  164 (361)
                      +.|..+++.++..||..++.-
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            456667777777777777763

>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=91.20  E-value=2.9  Score=39.97  Aligned_cols=139  Identities=9%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc--
Q psy14164        117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE--  193 (361)
Q Consensus       117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~--  193 (361)
                      +..++|-|..++-....+..      +..++. .+.+..+..+..++++++|+-++...-++.+........+++.+.  
T Consensus       180 ~FP~LDLLRl~v~~~~~~~~------l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~  253 (362)
T 3l3f_X          180 KTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE  253 (362)
T ss_dssp             CHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred             cchHHHHHHHHhcCCChHHH------HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence            67788888888876664432      222332 344667899999999999999876544554433222344455442  


Q ss_pred             --cC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc---------cCCHHHHHHHHHHHHHHhcCCch
Q psy14164        194 --HD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNNQ  259 (361)
Q Consensus       194 --~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~---------s~~~~v~~kA~~ll~~L~~~~~~  259 (361)
                        ..   .+..++..++..+=|++......   -.+....+.+.+++.         ..+....-+++-++.+|+..++.
T Consensus       254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~---~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~  330 (362)
T 3l3f_X          254 FSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT  330 (362)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHHHT---CSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence              11   13456666665555554321100   001223445666665         24778888899999999875555


Q ss_pred             HHHHH
Q psy14164        260 VKQVL  264 (361)
Q Consensus       260 ~~~~l  264 (361)
                      .++..
T Consensus       331 ~~~~a  335 (362)
T 3l3f_X          331 LRQFA  335 (362)
T ss_dssp             HHHTG
T ss_pred             HHHHh
Confidence            44433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.15  E-value=1.3  Score=42.72  Aligned_cols=96  Identities=11%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCCh-hhHHHHHhhCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        203 KSLYAVSCLVRENE-ECLKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       203 ~Al~ALS~l~r~~~-~~~~~f~~~ggi~~Lv~lL~s-----------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      +.+..|.--.|.++ ...+.|+ ++|+..|+.+|..           .+...+..+..++..|.....-....+-...+|
T Consensus        86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence            45666665556554 4568887 8999999999852           256888889999999987544344444456789


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..|+..|.+.   ...++..++..|..++...
T Consensus       165 ~~l~~~L~s~---~~~~~~~aleLL~~lc~~~  193 (383)
T 3eg5_B          165 LLLVRAMDPA---VPNMMIDAAKLLSALCILP  193 (383)
T ss_dssp             HHHHHTCCTT---SHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCC---chHHHHHHHHHHHHHHhCc
Confidence            9999999988   8999999999887777543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.10  E-value=0.12  Score=46.99  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=17.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETV  165 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~L  165 (361)
                      ...|..+++++++.||..|+..+
T Consensus        76 ~~~l~~L~~D~~~~VR~~aA~~L   98 (244)
T 1lrv_A           76 VEALTPLIRDSDEVVRRAVAYRL   98 (244)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HHHHHHHccCcCHHHHHHHHHHC
Confidence            44566788888999998888653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.40  E-value=1.3  Score=39.42  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhcc----C-------CHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164        202 VKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQS----K-------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  269 (361)
Q Consensus       202 ~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s----~-------~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~  269 (361)
                      .+.+..|.-..|.+ ....+.| ..+|+..|+..|..    +       +...+..+..++..|.....-....+...++
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~   97 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSH
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHH
Confidence            34556666555544 4567888 68999999888863    1       4677888999999998755444444555678


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      +..|+..|.++   +..++..++..|..++..
T Consensus        98 i~~l~~~L~s~---~~~~r~~~leLL~~lc~~  126 (233)
T 2f31_A           98 ILLLVRAMDPA---VPNMMIDAAKLLSALCIL  126 (233)
T ss_dssp             HHHHHTTCCTT---SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCC---CchHHHHHHHHHHHHHhC
Confidence            99999999988   899999998888776653

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=87.65  E-value=2.1  Score=35.14  Aligned_cols=91  Identities=10%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+--|+-+++..+.+.+     ..+..|..-|.+.++.++..|..++-.++.+ ++.+...+.+..++..|+.+++..
T Consensus        23 w~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~   97 (140)
T 3ldz_A           23 WGLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG   97 (140)
T ss_dssp             HHHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence            3456667777776654322     2355677778889999999999999888876 566777777788888899998777


Q ss_pred             CCCChhHHHHHHHHHHHHHh
Q psy14164        281 DALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~  300 (361)
                         +..++++++..+..-..
T Consensus        98 ---~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           98 ---HPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             ---CHHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHH
Confidence               89999999999877664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.60  E-value=22  Score=33.57  Aligned_cols=174  Identities=13%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             HHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC---hHHHHHHhhccCCCHHH
Q psy14164        124 LSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEHDSNTTV  200 (361)
Q Consensus       124 L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g---~l~~Ll~LL~~~~~~~v  200 (361)
                      |.+++..-..+.-+...+.+..+..+.+.++=+|-.-|...+-.+-+.+...-..++..+   .+...-+||.+ ++-.+
T Consensus       147 LRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVT  225 (341)
T 1upk_A          147 LRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVT  225 (341)
T ss_dssp             HHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHH
T ss_pred             HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-Ccchh
Confidence            333333333344444555666777888889999999999999999988887766777654   56777788887 57899


Q ss_pred             HHHHHHHHHHHhcC--ChhhHHHHHhh-CcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhC--CcHHH
Q psy14164        201 QVKSLYAVSCLVRE--NEECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSM--GMVEQ  272 (361)
Q Consensus       201 ~~~Al~ALS~l~r~--~~~~~~~f~~~-ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~--g~i~~  272 (361)
                      |+.++--|+-+.-+  |......++.. .-+..++.+|++.+..+|.+|-.++.-++.+   .+.....++..  .++..
T Consensus       226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~f  305 (341)
T 1upk_A          226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  305 (341)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHH
Confidence            99999999998864  66666666653 3688999999999999999999998887775   23455555543  23444


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLI  299 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~  299 (361)
                      |-++.... ..|.++.+-=...+..|.
T Consensus       306 l~~f~~d~-~eDeqF~dEK~~lI~~I~  331 (341)
T 1upk_A          306 LSKFQNDR-TEDEQFNDEKTYLVKQIR  331 (341)
T ss_dssp             HHHTTTTC--CCSHHHHHHHHHHHHHH
T ss_pred             HHhCCCCC-cchhhHHHHHHHHHHHHH
Confidence            44443321 124444443333344333

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=86.02  E-value=1.7  Score=47.56  Aligned_cols=102  Identities=10%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHHhhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhhCc
Q psy14164        153 SDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVRENEECLKEFIKRDG  227 (361)
Q Consensus       153 ~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~LL~~~~----~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg  227 (361)
                      .+...+..++|++|.++..-.. .-+.++ -.+++.|+.|..+..    ...++...+|.+|...|=-. .-..|+ ...
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~-~h~~~L-~~v  567 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR-AHWKFL-KTV  567 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH-HCHHHH-HHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH-hCHHHH-HHH
Confidence            4578899999999999864332 121222 136777777776532    12355556688887554211 112233 234


Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164        228 FSVLLRCIQSKKEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~  257 (361)
                      +..|++.+..++..|+..||.++..++...
T Consensus       568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C  597 (1073)
T 3gjx_A          568 VNKLFEFMHETHDGVQDMACDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            567778888889999999999999998753

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.59  E-value=21  Score=35.35  Aligned_cols=128  Identities=10%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164        106 TLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF  184 (361)
Q Consensus       106 ~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~  184 (361)
                      +|.....+...|.-|.+-+..+... .+.++.     ++..++.|...++..||..|.+-|..+|.+ ..    +  ..+
T Consensus        34 Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~----i--~ki  101 (507)
T 3u0r_A           34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN----L--PRV  101 (507)
T ss_dssp             HHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC----H--HHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh----h--hhH
Confidence            3444445677777777777776643 233333     578888999999999999999999999987 22    2  235


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  254 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~  254 (361)
                      .-.|++||..+ +.......-.+|-.+.+-++.+        -+..|...+.+++..+|.++.-+|+.=+
T Consensus       102 aDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          102 ADILTQLLQTD-DSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhcc-chHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            66789999974 4455555666677776655543        2233333444457899999888886444

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=84.80  E-value=8  Score=42.30  Aligned_cols=113  Identities=9%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             hHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhccC---CHH--HHHHHHHHHHHHhc-
Q psy14164        184 FLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQSK---KEK--LVIKSCFLIACLCT-  255 (361)
Q Consensus       184 ~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s~---~~~--v~~kA~~ll~~L~~-  255 (361)
                      .++.|-+.++. ..+-.....++||+++|+..-.+ ..+.|+ ...++.|+.+...+   +.+  ++...+|+++.... 
T Consensus       478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w  556 (1073)
T 3gjx_A          478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF  556 (1073)
T ss_dssp             HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence            44555555553 23467889999999999854332 233454 45677777776543   334  55555677765432 


Q ss_pred             --CCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164        256 --DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA  305 (361)
Q Consensus       256 --~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~  305 (361)
                        .+++...     -++..|++.+..+   +..+++.|..|+..+.+.|+..
T Consensus       557 l~~h~~~L~-----~vl~~L~~~m~~~---~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          557 LRAHWKFLK-----TVVNKLFEFMHET---HDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHCHHHHH-----HHHHHHHHHTTCC---STTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHhCHHHHH-----HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHH
Confidence              2333222     3466777777777   8999999999999999999754

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=84.06  E-value=4.1  Score=33.85  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ...+--|+-+++..+..-+     ..+..|..-|.+.++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        29 w~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k  103 (149)
T 3g2s_A           29 WASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPK  103 (149)
T ss_dssp             HHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHccc
Confidence            4466677777776553322     2455777778899999999999999988876 667788888889999999999631


Q ss_pred             ---CCCChhHHHHHHHHHHHHHhcC
Q psy14164        281 ---DALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ---~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         +..+..++++++..|..-...-
T Consensus       104 ~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A          104 YLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHh
Confidence               0127899999999998877543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=83.94  E-value=3  Score=35.46  Aligned_cols=94  Identities=10%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC-
Q psy14164        203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-  280 (361)
Q Consensus       203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~-  280 (361)
                      ..+-.|+-+++..+...+     .++..|.+-|++.+..++..|+.++-.++.+ ++.+...+.+..++..|+.++... 
T Consensus        32 ~~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~  106 (171)
T 1juq_A           32 EYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY  106 (171)
T ss_dssp             HHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence            445567777765543322     2345778888899999999999999999887 567888888889999999998631 


Q ss_pred             --CCCChhHHHHHHHHHHHHHhc
Q psy14164        281 --DALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       281 --~~~d~~~~e~al~aL~~L~~~  301 (361)
                        ...+..++++++..|..-...
T Consensus       107 ~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A          107 LGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Confidence              123689999999998777654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=83.35  E-value=6.5  Score=37.80  Aligned_cols=95  Identities=13%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        203 KSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       203 ~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s-----------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      +.+..|.-..|.+ ....+.|. .+|+..|+..|..           .+...+..+..+|..|+....-....+...+++
T Consensus        24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred             HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence            3455555555544 45677885 7999999888752           156888899999999987655455555566789


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      ..|+..|.+.   .+.++..++..|..++..
T Consensus       103 ~~l~~sL~s~---~~~~r~~vleLL~alc~~  130 (386)
T 2bnx_A          103 LLLVRAMDPA---VPNMMIDAAKLLSALCIL  130 (386)
T ss_dssp             HHHHHTCCTT---SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCC---CchHHHHHHHHHHHHHcC
Confidence            9999999888   888888888877776653

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.26  E-value=2.5  Score=35.09  Aligned_cols=94  Identities=10%  Similarity=0.074  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC-
Q psy14164        203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-  280 (361)
Q Consensus       203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~-  280 (361)
                      ...-.|+-+++..+..-     ..++..|..=|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++... 
T Consensus        20 ~~~leicD~I~~~~~~~-----k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~   94 (148)
T 1mhq_A           20 SAIQNFCEQVNTDPNGP-----THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKY   94 (148)
T ss_dssp             HHHHHHHHHHHHSSHHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCST
T ss_pred             HHHHHHHHHHHcCCccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence            34446666666544322     22356777778899999999999999999887 677888888899999999998741 


Q ss_pred             --CCCChhHHHHHHHHHHHHHhc
Q psy14164        281 --DALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       281 --~~~d~~~~e~al~aL~~L~~~  301 (361)
                        ...+..++++++..+..-...
T Consensus        95 ~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           95 LGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Confidence              112789999999988776643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=82.92  E-value=8.7  Score=41.52  Aligned_cols=144  Identities=11%  Similarity=0.092  Sum_probs=88.3

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHhh
Q psy14164        148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE--ECLKEFIKR  225 (361)
Q Consensus       148 ~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~--~~~~~f~~~  225 (361)
                      .++.+.++.++..++.+|+....--|  ...+++.+.++.+.++|..   +.++..|+-+|..++....  .....++..
T Consensus       200 ~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~  274 (980)
T 3ibv_A          200 AYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNI  274 (980)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence            34445788999999999999987544  3456777899999999974   5899999999999887643  222233332


Q ss_pred             CcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcC------Cc-----hHHHHH--HhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164        226 DGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTD------NN-----QVKQVL--LSMGMVEQMCVLIDIEDALDTEMNEH  290 (361)
Q Consensus       226 ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~------~~-----~~~~~l--~~~g~i~~Lv~lL~~~~~~d~~~~e~  290 (361)
                      =.+..++..+.  ..|..+.++.+.++..+...      .+     +.+...  .=.++++.++.++..+   +.++-..
T Consensus       275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~---~deVs~~  351 (980)
T 3ibv_A          275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD---YDETSTA  351 (980)
T ss_dssp             HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS---SHHHHHT
T ss_pred             HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC---chhHHHH
Confidence            12222233333  45777777777776655321      11     111100  0125677777777766   6666666


Q ss_pred             HHHHHHHHH
Q psy14164        291 LLSALASLI  299 (361)
Q Consensus       291 al~aL~~L~  299 (361)
                      ++..+..++
T Consensus       352 t~~Fw~~~l  360 (980)
T 3ibv_A          352 VFPFLSDLL  360 (980)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655554444

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.54  E-value=2.6  Score=35.54  Aligned_cols=90  Identities=11%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCC
Q psy14164        204 SLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDA  282 (361)
Q Consensus       204 Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~  282 (361)
                      ..-.|+-+++..+...+     ..+..|..-|.+.++.++..|+.++-.++.+ ++.+...+.+..++..|+.++...  
T Consensus        35 ~~leicD~I~~~~~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~--  107 (163)
T 1x5b_A           35 LIMDICDKVGSTPNGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK--  107 (163)
T ss_dssp             HHHHHHHHHHHSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC--
Confidence            34456666665443322     2345677778889999999999999988887 677888888888999999988752  


Q ss_pred             CChhHHHHHHHHHHHHHh
Q psy14164        283 LDTEMNEHLLSALASLIK  300 (361)
Q Consensus       283 ~d~~~~e~al~aL~~L~~  300 (361)
                      .+..++++++..|..-..
T Consensus       108 ~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A          108 AHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            278999999998876664

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=81.14  E-value=20  Score=39.51  Aligned_cols=107  Identities=8%  Similarity=0.065  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcC----
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL--EGSDPELRWRAAETVADIVQNN----  172 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL--~s~~~~vr~~Aa~~Lg~iaqnn----  172 (361)
                      .+.+++..+.++..+.+.+..|-+.|..+-.+.         .+|..+...|  .+.+..+|..|+.+|-+.++.+    
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l   82 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM   82 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence            456777777676556667888877777764332         2566665544  4668899999999999988651    


Q ss_pred             HHHHHHHHhcChHHHHHHhhccC--CCHHHHHHHHHHHHHHhcC
Q psy14164        173 PFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRE  214 (361)
Q Consensus       173 ~~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~  214 (361)
                      +..+...++..++..+.+.....  .+..+|.+.+.+|+.|++.
T Consensus        83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~  126 (1204)
T 3a6p_A           83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR  126 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence            33344445555666655542211  3578999999999998874

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.10  E-value=4.2  Score=36.13  Aligned_cols=112  Identities=10%  Similarity=0.178  Sum_probs=77.2

Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHH
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQ  262 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~  262 (361)
                      -+..+|.-..++...+.-...+--|+-+++..+..-+     .++..|..=|++.++.++..|+.++-.++.+ ++.+..
T Consensus         8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~   82 (226)
T 3zyq_A            8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD   82 (226)
T ss_dssp             HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence            3444454444332111223455667777765443322     2355677778899999999999999999887 667788


Q ss_pred             HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       263 ~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .+.+..++..|+.++...  .+..++++++..|......-
T Consensus        83 eias~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           83 EVANKQTMEELKDLLKRQ--VEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             HHSSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHh
Confidence            888888888888888653  27899999999998777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-23
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-05
d1gnla_	543	e.26.1.1 (A:) Hybrid cluster protein (prismane pro	0.003

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (238), Expect = 1e-23
 Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 14/261 (5%)

Query: 99  ELEKIIKTLK----------ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVL-Q 147
           +++  ++ L           E    +    GAL+ L+D   ++D A DF ++ G+ +L  
Sbjct: 6   QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVG 65

Query: 148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 207
             LE     LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A
Sbjct: 66  RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFA 125

Query: 208 VSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
           +SCLVRE E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SM
Sbjct: 126 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185

Query: 268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKH 327
           GMV+Q+  L+  E +     +EH+L AL SL+ D P+    CR   L L+  L    +  
Sbjct: 186 GMVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 328 AGNEVYHKELEYVNSVLTEVF 348
             +E Y +ELE+   +L   F
Sbjct: 243 QQHEEYQEELEFCEKLLQTCF 263

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 6/199 (3%)

Query: 120 ALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179
           A+ NL +Y    + A        +P L  LL   D  +  +AA  V  + +        +
Sbjct: 1   AVVNLINYQDDAELAT-----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKK 239
                ++ ++ ++++ ++      +   +  L   + E L    K  G   L++ + S  
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPV 114

Query: 240 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299
           + ++  +   +  L       K  +   G +++M  L++  +     +    L  LA   
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174

Query: 300 KDSPEAQSLCRLEPLNLKF 318
           ++S             +  
Sbjct: 175 QESKLIILASGGPQALVNI 193

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 5e-05
 Identities = 31/250 (12%), Positives = 84/250 (33%), Gaps = 6/250 (2%)

Query: 87  DALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLP 144
           +A    ++     +  I++T++   + +      G L NLS      +      K GG+P
Sbjct: 48  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS---HHREGLLAIFKSGGIP 104

Query: 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 204
            L  +L      + + A  T+ +++ +   ++  +     L  ++  +    N      +
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 163

Query: 205 LYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 264
              +  L   N+E     +   G   L+  +++   + ++ +   +  + +  +  K  +
Sbjct: 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223

Query: 265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIK 324
           +  G ++ + + +        +     L  L+         + L       L      + 
Sbjct: 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Query: 325 EKHAGNEVYH 334
              AG     
Sbjct: 284 TCAAGILSNL 293

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 26/223 (11%), Positives = 78/223 (34%), Gaps = 21/223 (9%)

Query: 97  GAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP 155
           G  + K ++ L  +++  + I    + +               ++GG+  L  LL   + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPNQ 58

Query: 156 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215
            ++  AA  + ++V  +  ++    + + +   ++ +    N  +Q +    +  L   +
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 216 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 259
              LKE +  D   VL   +                +    ++   +   +  L + +  
Sbjct: 119 --ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302
            + +    G+++ +   +    A     ++ + + +  L   S
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219

>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio desulfuricans [TaxId: 876]} Length = 543

class: Multi-domain proteins (alpha and beta)
fold: Prismane protein-like
superfamily: Prismane protein-like
family: Hybrid cluster protein (prismane protein)
domain: Hybrid cluster protein (prismane protein)
species: Desulfovibrio desulfuricans [TaxId: 876]

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 47  SNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKT 106
           + LQD L Y    G    A       +A   +  +R  +   L + + N   + + + + 
Sbjct: 31  AALQDALIYVT-KGLGQIATRLRAEGKAVD-HRIDR-LVTGNLFATITNANFDDDILAER 87

Query: 107 LKENQDQKDICIGALDNLSDY-ICSIDYANDFLKMGGLPVLQPLLEGSDPELRW 159
           ++     K     +L + S     ++  A++   M        ++  +D ++R 
Sbjct: 88  VRMTCAAKKELAASLTDKSGLSDAALWEASEKSAMLAKAGTVGVMATTDDDVRS 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.78
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.7
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.45
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.39
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.38
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.23
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.23
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.21
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.14
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.1
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.1
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.09
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.05
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.02
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.58
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.18
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	97.16
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.1
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.45
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.42
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.17
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	94.87
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.83
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.41
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.24
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	94.23
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	94.04
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.32
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	92.32
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.76
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.62
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	91.11
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.24
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.07
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.57
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	83.91
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	82.98
d1elka_	153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	80.46

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-38  Score=289.04  Aligned_cols=252  Identities=35%  Similarity=0.541  Sum_probs=239.1

Q ss_pred             CHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHH
Q psy14164         95 NVGAELEKIIKTLKENQ----------DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAE  163 (361)
Q Consensus        95 ~~~~~mk~~l~~L~~~~----------~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~  163 (361)
                      +|++.||+++.++.++.          .+.+.+..|++.|.+++++.||++.|+++||+++++. +|+++++++|..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~   81 (264)
T d1xqra1           2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ   81 (264)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            47899999999999874          3357899999999999999999999999999999986 789999999999999


Q ss_pred             HHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHH
Q psy14164        164 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLV  243 (361)
Q Consensus       164 ~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~  243 (361)
                      +|++++++||.+|..+++.|++|+|+++|.++.++.++.+|++||++++++++.....|+..||++.|+++|++++.+++
T Consensus        82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~  161 (264)
T d1xqra1          82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK  161 (264)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHH
Confidence            99999999999999999999999999999877788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHH
Q psy14164        244 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       244 ~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~  323 (361)
                      .+++++|.+|+.++++.+..+.+.|+++.|+.+|+++   +.+++++++.+|.+|+..++.....+....+.+...|+.+
T Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~  238 (264)
T d1xqra1         162 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  238 (264)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC---CHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999998999999999999999999999998   9999999999999999999999999988888888999999


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164        324 KEKHAGNEVYHKELEYVNSVLTEVFE  349 (361)
Q Consensus       324 ~~~l~~~~e~~~e~~~~~~il~~~f~  349 (361)
                      .+.+...+++.++.+++.+|+++||+
T Consensus       239 ~~~~~~~~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         239 CQLLQQHEEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHhccchHHHHHHHHHHHHHHHHhcC
Confidence            88888888999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.1e-22  Score=196.55  Aligned_cols=236  Identities=17%  Similarity=0.200  Sum_probs=196.8

Q ss_pred             CHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164        113 QKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  191 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L  191 (361)
                      +.+.+..++..|.++++..+. ...+.+.|+++.++.++.+++..++..|+++|++++.+++.....+++.|+++.|..+
T Consensus       259 d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~l  338 (503)
T d1wa5b_         259 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL  338 (503)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence            356778889999998875543 3568899999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCC
Q psy14164        192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMG  268 (361)
Q Consensus       192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g  268 (361)
                      +.+ ++..+++.++|+|+|++.+++.....+++.|+++.++..|.+.+.+++..|+|+|++++..   .++....+++.|
T Consensus       339 l~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~  417 (503)
T d1wa5b_         339 LSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG  417 (503)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred             hcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCC
Confidence            987 5789999999999999999999999999999999999999999999999999999999864   356778899999


Q ss_pred             cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHH
Q psy14164        269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSV  343 (361)
Q Consensus       269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~i  343 (361)
                      +++.|+.+|...   |.++...++.+|.+|+.........-......+...++     +.++.++.| ++.++|++|..|
T Consensus       418 ~l~~l~~~L~~~---d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~-~~~~i~~~A~~i  493 (503)
T d1wa5b_         418 CIKPLCDLLEIA---DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN-ENDKIYEKAYKI  493 (503)
T ss_dssp             CHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC-SCHHHHHHHHHH
T ss_pred             cHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHH
Confidence            999999999988   99999999999999986443211100000011222232     346677755 678899999999


Q ss_pred             HHHhcCCCCC
Q psy14164        344 LTEVFEEDSP  353 (361)
Q Consensus       344 l~~~f~~~~~  353 (361)
                      +++||++++|
T Consensus       494 l~~~f~~~~~  503 (503)
T d1wa5b_         494 IETYFGEEED  503 (503)
T ss_dssp             HHHHSSSCC-
T ss_pred             HHHHcCCcCC
Confidence            9999987764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.9e-21  Score=182.32  Aligned_cols=228  Identities=13%  Similarity=0.187  Sum_probs=193.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+.+..++..|..++...+.. ..+...|+++.|+.++.+++..++..|+++|++++.+++.....+++.|+++.|+.
T Consensus       200 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~  279 (434)
T d1q1sc_         200 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS  279 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH
T ss_pred             cccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHH
Confidence            45677888999999998765433 45678899999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCc
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGM  269 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~  269 (361)
                      ++++ ++..++..|+|+|++++++++.....+.+.|+++.++.++.+++.+++..|+|++.+++.. +++....+.+.|+
T Consensus       280 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~  358 (434)
T d1q1sc_         280 LLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  358 (434)
T ss_dssp             HTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             hhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence            9997 6779999999999999999988888999999999999999999999999999999999876 5677788999999


Q ss_pred             HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHHH
Q psy14164        270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSVL  344 (361)
Q Consensus       270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~il  344 (361)
                      ++.|+.+|.+.   +++++..++.+|.+++......    .... .+...++     +.++.++.+ ++.++++.|..|+
T Consensus       359 i~~L~~ll~~~---d~~~~~~~l~~l~~ll~~~~~~----~~~~-~~~~~~~~~~~~~~i~~L~~~-~n~~i~~~a~~il  429 (434)
T d1q1sc_         359 IEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKL----GETE-KLSIMIEECGGLDKIEALQRH-ENESVYKASLNLI  429 (434)
T ss_dssp             HHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHTT----TCHH-HHHHHHHHTTSHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhc----CCcH-HHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHH
Confidence            99999999998   9999999999999998633210    0000 1111222     345667655 7899999999999


Q ss_pred             HHhcC
Q psy14164        345 TEVFE  349 (361)
Q Consensus       345 ~~~f~  349 (361)
                      ++||.
T Consensus       430 ~~~f~  434 (434)
T d1q1sc_         430 EKYFS  434 (434)
T ss_dssp             HHHCC
T ss_pred             HHHhC
Confidence            99995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.1e-17  Score=161.69  Aligned_cols=193  Identities=12%  Similarity=0.226  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+.+..|++.|..++... +....+...|+++.++.+|.+++.+++..|+|+|+|++..++.+++.+++.|++++|+.
T Consensus       132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~  211 (503)
T d1wa5b_         132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG  211 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchh
Confidence            34567888999999988643 45567889999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      ++.+ .+..++..++|+|++++++..+........++++.|+.++.+.+..++..++|++++|+...++....+++.|++
T Consensus       212 ll~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  290 (503)
T d1wa5b_         212 LFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP  290 (503)
T ss_dssp             GGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred             hccc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhh
Confidence            9987 567899999999999999866554555567899999999999999999999999999999888888999999999


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~  308 (361)
                      +.++.+|.++   +..++..++.+|.+++...+.....
T Consensus       291 ~~l~~ll~~~---~~~v~~~al~~l~nl~~~~~~~~~~  325 (503)
T d1wa5b_         291 KRLVELLSHE---STLVQTPALRAVGNIVTGNDLQTQV  325 (503)
T ss_dssp             HHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hhhhhcccCC---chhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999998   9999999999999999887755443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.6e-17  Score=161.25  Aligned_cols=198  Identities=14%  Similarity=0.190  Sum_probs=175.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164         99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus        99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      .+...+..|.. ..+.+.+..|+..|..++.+.++...+++.||+++|+.+|.+++++++..|+++|++++.+++..+..
T Consensus        60 ~v~~l~~~L~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          60 MVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            45555555655 34567888999999999999899999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCC
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDN  257 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~  257 (361)
                      +.+.|++|+|+.+|.+ .+..++..++++|.+++.+++.....+...||++.|+.+|... ...++..+++++.+++. +
T Consensus       139 ~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~  216 (529)
T d1jdha_         139 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C  216 (529)
T ss_dssp             HHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S
T ss_pred             HHhcCCchHHHHHHHc-cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-c
Confidence            9999999999999987 5789999999999999998888888999999999999999754 68899999999999876 5


Q ss_pred             chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ++.+..+++.|+++.|+.+|.++   +..++..++.++.++....
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~l~~ls~~~  258 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhhhhhhhhhHHHHhccc---chhhhhhhhhHHHhccccc
Confidence            67888899999999999999888   8888888888888876543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.3e-16  Score=152.85  Aligned_cols=203  Identities=11%  Similarity=0.216  Sum_probs=171.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCccc--HHHHHHCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDY--ANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQ  176 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idn--a~~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q  176 (361)
                      +++.+..+.+  ++.+.+..|+..|..++..-.+  ...+.+.|++|+|+++|++ +++++|..|+++|++++..++...
T Consensus        15 i~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          15 VEDIVKGINS--NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             HHHHHHHHTS--SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            3555666665  3668888899999887654444  3678999999999999965 568899999999999999999999


Q ss_pred             HHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-----CHHHHHHHHHHHH
Q psy14164        177 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-----KEKLVIKSCFLIA  251 (361)
Q Consensus       177 ~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-----~~~v~~kA~~ll~  251 (361)
                      ..+++.|++|.|+.+|.+ ++..++..|+++|++++.+++.....+...|+++.|+.++...     .......++|+++
T Consensus        93 ~~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999987 5789999999999999998888888899999999999999764     3466788999999


Q ss_pred             HHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164        252 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL  308 (361)
Q Consensus       252 ~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~  308 (361)
                      +++.............++++.++.++.++   +.+++..++++|.+++..++.....
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~  225 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEM  225 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhcc---ccchhhhHHhhhcccchhhhhhHHH
Confidence            99887655555555668899999999998   9999999999999999887655443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-15  Score=138.13  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  189 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll  189 (361)
                      .+.+.+..|+..|..++.+. .....+...||++.|+.+|. .+++.+|..|+++|++++.+++..+..+.+.|+++.|+
T Consensus        71 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~  150 (264)
T d1xqra1          71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM  150 (264)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHH
Confidence            45688999999999999743 45567889999999999996 57889999999999999999999999999999999999


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164        190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM  267 (361)
Q Consensus       190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~  267 (361)
                      +++.+ .+..++.+++++|++++.+++.....+.+.|+++.|+.+|++++..+|..|+++|.+|+...+.....+...
T Consensus       151 ~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         151 RAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHhc-CchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99997 578999999999999999999999999999999999999999999999999999999998887776666543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-15  Score=149.52  Aligned_cols=188  Identities=12%  Similarity=0.123  Sum_probs=163.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164        112 DQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  190 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~  190 (361)
                      .+.+.+..|+..|..++.+.+. ...|...||+++|+.+|+++++.++..|+++|++++.+++..+..+.+.|+++.|+.
T Consensus       113 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  192 (529)
T d1jdha_         113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN  192 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHH
Confidence            3457888899999888765554 456789999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      ++.+.....++..+++++++++. ++.....|++.||++.|+.++.+++.+++..+++++.++......   .....|++
T Consensus       193 ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i  268 (529)
T d1jdha_         193 IMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLL  268 (529)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhhhhcc
Confidence            99876777899999999999987 566788899999999999999999999999999999999765322   11224789


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      +.|+.+|.++   +..+++.++.+|.+++..++...
T Consensus       269 ~~Lv~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~  301 (529)
T d1jdha_         269 GTLVQLLGSD---DINVVTCAAGILSNLTCNNYKNK  301 (529)
T ss_dssp             HHHHHHTTCS---CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             hhhhhhcccc---cHHHHHHHHHHHHhhccchhHHH
Confidence            9999999998   99999999999999998776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-15  Score=141.45  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=133.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .+|.||++|+++++++|..|+++|++++.+|+..+..+.+.|++|+|+++|.+ +++.+|..|+++|.+++.+++..+..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            48999999999999999999999999999999999999999999999999997 57899999999999999999999999


Q ss_pred             HHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC------------CCCCChhHH
Q psy14164        222 FIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI------------EDALDTEMN  288 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~------------~~~~d~~~~  288 (361)
                      +.+.||++.|+.++.+ .+..++..|++++.+|+.... ....+...|+...+..++..            ....+..++
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            9999999999998865 588999999999999988643 34444444443333332210            012277899


Q ss_pred             HHHHHHHHHHHhcCh
Q psy14164        289 EHLLSALASLIKDSP  303 (361)
Q Consensus       289 e~al~aL~~L~~~~~  303 (361)
                      +.++.+|..+.....
T Consensus       161 ~~a~~~l~~~~~~~~  175 (457)
T d1xm9a1         161 FNATGCLRNLSSADA  175 (457)
T ss_dssp             HHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHhcCch
Confidence            999999998886654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-14  Score=136.64  Aligned_cols=176  Identities=11%  Similarity=0.137  Sum_probs=144.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164        100 LEKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  178 (361)
Q Consensus       100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~  178 (361)
                      |...++.|.+  .+.+.+..|+..|..++. +-++...+.+.||+|+|+++|+++++++|..|+++|++++.+++.++..
T Consensus         4 ip~lv~~L~~--~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           4 IPKAVQYLSS--QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHS--SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHhCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4556677765  456889999999999985 5668999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh----------------ccCCHHH
Q psy14164        179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI----------------QSKKEKL  242 (361)
Q Consensus       179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL----------------~s~~~~v  242 (361)
                      +.+.|+++.|++++.+..+..++..|+++|.+++.+... ...+... |++.++..+                ...+..+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999998777889999999999999986544 4445544 444444333                3457899


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164        243 VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI  279 (361)
Q Consensus       243 ~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~  279 (361)
                      +..+++++.+++.........+...|+++.++.++.+
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence            9999999999987654444455567889999998864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.3e-06  Score=81.88  Aligned_cols=210  Identities=12%  Similarity=0.051  Sum_probs=144.7

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +.+.+..++..+..+...++...-..  ..++.+..++.+++..+|..++.+++.+++.-   ...++.....+.+..++
T Consensus       376 ~~~v~~~~~~~l~~~~~~~~~~~~~~--~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l  450 (588)
T d1b3ua_         376 CPEVRLNIISNLDCVNEVIGIRQLSQ--SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL---GVEFFDEKLNSLCMAWL  450 (588)
T ss_dssp             CHHHHHHHHTTCHHHHHHSCHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---CGGGCCHHHHHHHHHGG
T ss_pred             hhhhhhHHHHHHHHHHhhcchhhhhh--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc---ChHhHHHHHHHHHHhhc
Confidence            44566666665555544332221111  23667778889999999999999999998631   11122234677788888


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  272 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~  272 (361)
                      .. +...||..|+.+|+.++.....   .+.....++.+..++.+++..+|..+++++..+....   -.......+++.
T Consensus       451 ~D-~~~~VR~~A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~~~~~~~ilp~  523 (588)
T d1b3ua_         451 VD-HVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC---GQDITTKHMLPT  523 (588)
T ss_dssp             GC-SSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHH
T ss_pred             cC-CchhHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc---ChHHHHHHHHHH
Confidence            75 6779999999999999875332   2233456788999999999999999999999886531   122334468999


Q ss_pred             HHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHh
Q psy14164        273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~  347 (361)
                      +..++..+   .+.+|..++.+|..+....+..         .+...+...++.+.+ ++..++..+|..-++..
T Consensus       524 ll~~~~D~---v~nVR~~a~~~l~~i~~~~~~~---------~~~~~i~~~l~~L~~-D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         524 VLRMAGDP---VANVRFNVAKSLQKIGPILDNS---------TLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHGGGCS---CHHHHHHHHHHHHHHGGGSCHH---------HHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred             HHHHcCCC---CHHHHHHHHHHHHHHHHHcCcH---------hHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            99999988   8999999999999997654321         112334445555653 46778888888877653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=2.1e-08  Score=78.28  Aligned_cols=109  Identities=8%  Similarity=0.114  Sum_probs=88.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH
Q psy14164        150 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS  229 (361)
Q Consensus       150 L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~  229 (361)
                      |+++++.||..|+++||.+-            ...++.|+.+|.+ ++..+|..|+++|+.+.  .+         ..++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~--~~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSN-EDWRIRGAAAWIIGNFQ--DE---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGC-SCHHHHHHHHHHHGGGC--SH---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcc--hh---------hhHH
Confidence            56788899999999998642            2367889999986 67899999999998763  12         2467


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164        230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  296 (361)
Q Consensus       230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~  296 (361)
                      .|+.+|++++..||..|+++|..+-.  +         +.++.|..++..+   +..+|..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~--~---------~~~~~L~~ll~d~---~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETG---TGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSC---CTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc--c---------chHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            88999999999999999999998732  2         4578888999988   9999999998874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.4e-06  Score=85.72  Aligned_cols=149  Identities=12%  Similarity=0.142  Sum_probs=108.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh-hHHHH
Q psy14164        144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE-CLKEF  222 (361)
Q Consensus       144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~-~~~~f  222 (361)
                      +.+...+.+++..+|..|+.++|.++.+....-...+ ..++|.|+..+++ +++.||..|+|+|+.++..... ....+
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~  475 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTY  475 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3344567789999999999999999977554322222 2367888888885 6789999999999998753222 12233


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      . ...++.++..+.+++.+|+..|++++.+++.. .+....++-  .+++.++..+...   +...+..++.++..++.
T Consensus       476 ~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~~~---~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         476 L-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKY---QHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             T-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Confidence            2 46788889999999999999999999999864 333333322  3567788888877   77777777888877775

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=7.8e-07  Score=68.94  Aligned_cols=88  Identities=11%  Similarity=0.054  Sum_probs=72.9

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      .++++|+.+|.++++.||..|+++||++.  .         .+.+|.|+.+|.+ +++.||..|+++|+.+-  .+    
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~---------~~~~~~L~~~l~d-~~~~VR~~a~~aL~~i~--~~----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--D---------ERAVEPLIKLLED-DSGFVRSGAARSLEQIG--GE----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--S---------HHHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--SH----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--h---------hhhHHHHHhhhcc-chhHHHHHHHHHHHHhC--cc----
Confidence            36899999999999999999999999764  2         2368899999986 57899999999999872  22    


Q ss_pred             HHHhhCcHHHHHHhhccCCHHHHHHHHHHHH
Q psy14164        221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA  251 (361)
Q Consensus       221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~  251 (361)
                           ..++.|..++++++..||..|+.+|.
T Consensus        84 -----~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 -----RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 34677888999999999999887763

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.3e-05  Score=72.78  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=126.0

Q ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164        101 EKIIKTLKENQ-DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  179 (361)
Q Consensus       101 k~~l~~L~~~~-~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v  179 (361)
                      ++.+..|.+.. ++++.+..+.+.|..++..+...+...  ..++++..++.++++.||..|+.+++.+++.-+..   .
T Consensus        48 ~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~~~~--~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~  122 (588)
T d1b3ua_          48 SELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---D  122 (588)
T ss_dssp             HTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGG--GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---H
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---H
Confidence            44555554432 345667777777776655433222211  23677778889999999999999999998764432   2


Q ss_pred             HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCch
Q psy14164        180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ  259 (361)
Q Consensus       180 ~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~  259 (361)
                      ++.-.+|.+..+..+ .....|..|+..++.+.........    ...++.+..++++.++.||+.|+..+..++..-..
T Consensus       123 ~~~~l~p~i~~L~~~-~~~~~r~~a~~ll~~~~~~~~~~~~----~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~  197 (588)
T d1b3ua_         123 LEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAVK----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL  197 (588)
T ss_dssp             HHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHHH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH
Confidence            334456666666665 4567888888888888765433222    22367788888999999999999999999875221


Q ss_pred             HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         ......+++.+..++..+   +..+|..++.++..++...
T Consensus       198 ---~~~~~~l~~~l~~l~~d~---~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         198 ---DNVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             ---HHHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHhhccC
Confidence               122235567777777777   8888888888888887644

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.2e-05  Score=67.38  Aligned_cols=97  Identities=12%  Similarity=0.012  Sum_probs=52.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164        141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK  220 (361)
Q Consensus       141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~  220 (361)
                      .-.+.|+++|+++++.||..|+.+|+.+.  ++         .++|.|++++++ ++..+|..|+++|+.+....... .
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccccc-c
Confidence            34556666666777777777777666553  11         245666666664 45666666666666654321111 1


Q ss_pred             HHHhhCcHHH-HHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164        221 EFIKRDGFSV-LLRCIQSKKEKLVIKSCFLIACLCT  255 (361)
Q Consensus       221 ~f~~~ggi~~-Lv~lL~s~~~~v~~kA~~ll~~L~~  255 (361)
                      .     .++. +..++++++..++..|+.++..+..
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence            1     1112 2223445566666666666665554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=0.00014  Score=72.61  Aligned_cols=211  Identities=12%  Similarity=0.102  Sum_probs=139.7

Q ss_pred             HHHHHHhhc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHH-------HHHC------CCHHHHHHhh
Q psy14164         85 LLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND-------FLKM------GGLPVLQPLL  150 (361)
Q Consensus        85 L~eal~~~~-~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~-------~~~~------Gg~~~Lv~LL  150 (361)
                      =++.|.++. .+..+.+...+.++.+...+.+.|..|.-.|...+........       +..+      .....++..|
T Consensus        25 Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l  104 (861)
T d2bpta1          25 SETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL  104 (861)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHH
Confidence            344444444 3456777888888888777778888888777777754332211       0001      1134567788


Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh---cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--h
Q psy14164        151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK--R  225 (361)
Q Consensus       151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~---~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~--~  225 (361)
                      .++++.||..++.+++.++...      +-+   -..++.|+..+.++.+..++..|+.+|+.++.........+..  .
T Consensus       105 ~~~~~~vr~~~a~~i~~i~~~~------~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~  178 (861)
T d2bpta1         105 VSIEPRIANAAAQLIAAIADIE------LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN  178 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHH------GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHh------CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8999999999999999998531      111   1367888888887666788889999999998765443222221  1


Q ss_pred             CcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchH-HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        226 DGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       226 ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      ..+..++..+.+  .+..++..|..++.+++..-+.. ........+++.+...+..+   +.+++..++.++..++...
T Consensus       179 ~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~i~~~~  255 (861)
T d2bpta1         179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKY  255 (861)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC---CHHHHHHHHHHHHHHHHHH
Confidence            123334444433  46899999999999887653321 11112233567788888888   9999999999999998766


Q ss_pred             hH
Q psy14164        303 PE  304 (361)
Q Consensus       303 ~~  304 (361)
                      +.
T Consensus       256 ~~  257 (861)
T d2bpta1         256 YT  257 (861)
T ss_dssp             GG
T ss_pred             HH
Confidence            53

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.5e-05  Score=81.31  Aligned_cols=184  Identities=10%  Similarity=0.122  Sum_probs=133.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      |+.|+..+.+++..+|..++.+||.++.-+|.        ..+|.|..++.+ ++..+|..++.++..++.+.+.....+
T Consensus       930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~-~~~~~r~~ai~~l~~~~~~~~~~~~~~ 1000 (1207)
T d1u6gc_         930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1000 (1207)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            44455556678889999999999999877763        468999999986 678999999999999998877666665


Q ss_pred             HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC---------------CCChhH
Q psy14164        223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED---------------ALDTEM  287 (361)
Q Consensus       223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~---------------~~d~~~  287 (361)
                      + ..-++.++..|++++..||+.|..++..++.+.|+.....+. .+++.|........               .+..++
T Consensus      1001 l-~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~-~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~ 1078 (1207)
T d1u6gc_        1001 L-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1078 (1207)
T ss_dssp             H-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred             H-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHhccchhheeeeecCCceeecCCcHHH
Confidence            5 345667778899999999999999999999887766444332 36666665543321               013579


Q ss_pred             HHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhc
Q psy14164        288 NEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF  348 (361)
Q Consensus       288 ~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f  348 (361)
                      |..|..++..++..+..        ...+.+++.....-+..+   .|+.-.|..++.++.
T Consensus      1079 rk~a~e~~~~~l~~~~~--------~~~~~~~~~~~~~gl~d~---~di~~~~~~~l~~l~ 1128 (1207)
T d1u6gc_        1079 RKAAFECMYTLLDSCLD--------RLDIFEFLNHVEDGLKDH---YDIKMLTFLMLVRLS 1128 (1207)
T ss_dssp             HHHHHHHHHHHHHSSCS--------SSCHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh--------hcCHHHHHHHHHhcccch---HHHHHHHHHHHHHHH
Confidence            99999999999976632        234556666666566543   256556666665544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=7.5e-05  Score=64.93  Aligned_cols=127  Identities=11%  Similarity=0.027  Sum_probs=89.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC
Q psy14164        104 IKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD  183 (361)
Q Consensus       104 l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g  183 (361)
                      +..|.+  .+...+..|+..|..+-.          -.+++.|+.+|+++++.||..|+++|+.+........      .
T Consensus        25 ~~~L~d--~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~------~   86 (276)
T d1oyza_          25 FRLLDD--HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------N   86 (276)
T ss_dssp             HHHTTC--SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------H
T ss_pred             HHHhcC--CCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc------c
Confidence            344443  456888999888876531          1248999999999999999999999998865433211      1


Q ss_pred             hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                      .++.|+..+-++++..+|..|+++|+.++.+.+....     ..++.+...+.+++..++..|++++..+
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            3455666555567889999999999999876543322     2355677777777888888777766654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.8e-05  Score=77.73  Aligned_cols=186  Identities=17%  Similarity=0.204  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHhhcCcccH-HHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164        115 DICIGALDNLSDYICSIDYA-NDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  192 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna-~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL  192 (361)
                      +....+++.+..+++..... ..++ ...-++.++.++++.++.||..|..++|.++...+..-...++ ..++.|++-|
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L  715 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNL  715 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHh
Confidence            44556666666666543321 2333 2344677788999999999999999999998765432111111 3678888888


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164        193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  270 (361)
Q Consensus       193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i  270 (361)
                      .+ ....++..|+|+++-|+.........++ ...++.|+..|+.+  +..++..++.+|+.|+...|+.....+ ..++
T Consensus       716 ~~-~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l-~~~~  792 (888)
T d1qbkb_         716 NP-EFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML-QQFI  792 (888)
T ss_dssp             CG-GGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG-GGTH
T ss_pred             Cc-CCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH-HHHH
Confidence            76 4678999999999999987666555444 35778899999865  567999999999999887775443323 2467


Q ss_pred             HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164        271 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ  306 (361)
Q Consensus       271 ~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~  306 (361)
                      +.++..|...  .|..-++.+...+..+...+|+.+
T Consensus       793 ~~~~~~l~~~--~d~~ek~~~~~g~~~~i~~~p~~~  826 (888)
T d1qbkb_         793 RPWCTSLRNI--RDNEEKDSAFRGICTMISVNPSGV  826 (888)
T ss_dssp             HHHHHHHTTS--CCSHHHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHhccC--CCcHHHHHHHHHHHHHHHHCcHHH
Confidence            8888888663  166678899999999999888654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.3e-05  Score=84.66  Aligned_cols=181  Identities=14%  Similarity=0.101  Sum_probs=123.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH---------------H
Q psy14164        112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---------------Q  176 (361)
Q Consensus       112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~---------------q  176 (361)
                      .....+..|+..|.++....+....   ......++..+.+++.+||..|+.++|+++..|+..               +
T Consensus       827 ~~~~~~~~al~~Lge~~~~~~~~~~---~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~  903 (1207)
T d1u6gc_         827 STDSIRLLALLSLGEVGHHIDLSGQ---LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQ  903 (1207)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCCSC---THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGH
T ss_pred             chHHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHH
Confidence            3345666666666555433221100   012456778899999999999999999998776532               1


Q ss_pred             HHH-------Hhc-C------hHHHHHHhhc---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCC
Q psy14164        177 NFI-------IQT-D------FLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKK  239 (361)
Q Consensus       177 ~~v-------~~~-g------~l~~Ll~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~  239 (361)
                      ..+       +.. +      ..+.++..|-   .+.+..+|..++.+|+.++..++..        .++.|...|.+++
T Consensus       904 ~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~--------~lp~L~~~l~~~~  975 (1207)
T d1u6gc_         904 YLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGS  975 (1207)
T ss_dssp             HHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG--------THHHHTTTSSSSC
T ss_pred             HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhCCCC
Confidence            111       111 1      2344444432   1245578888888888887765542        4788888999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164        240 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS  307 (361)
Q Consensus       240 ~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~  307 (361)
                      ..+|.-|+.++.+++...+......+ ..+++.++..|..+   +..+|..|+.+|.+++...|..+.
T Consensus       976 ~~~r~~ai~~l~~~~~~~~~~~~~~l-~~li~~ll~~l~d~---~~~vR~~al~~l~~~~~~~p~li~ 1039 (1207)
T d1u6gc_         976 SYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDP---DLNVRRVALVTFNSAAHNKPSLIR 1039 (1207)
T ss_dssp             HHHHHHHHHHTGGGCCSSCCTHHHHH-HHHSTTTHHHHSSS---STHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhChHHHH
Confidence            99999999999998887443333322 23567778889888   999999999999999998886554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.4e-05  Score=70.02  Aligned_cols=197  Identities=9%  Similarity=0.099  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHH--HHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14164         98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAN--DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS  175 (361)
Q Consensus        98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~--~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~  175 (361)
                      ..+...+..+.+...+.+.+..|+..+..++.......  .......++.+..++.+++++++..++++++.+++..+..
T Consensus       171 ~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  250 (458)
T d1ibrb_         171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  250 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            35566666666655667889999999888876543211  1111224566777889999999999999999999876543


Q ss_pred             HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh-------------------------------------------
Q psy14164        176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV-------------------------------------------  212 (361)
Q Consensus       176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~-------------------------------------------  212 (361)
                      -...+.....+.+...+.+ .++.++..|+..++.++                                           
T Consensus       251 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  329 (458)
T d1ibrb_         251 METYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  329 (458)
T ss_dssp             CTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence            2111222223333333332 34555555555555543                                           


Q ss_pred             --------------------------cCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-chHHHHHH
Q psy14164        213 --------------------------RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLL  265 (361)
Q Consensus       213 --------------------------r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~~~~~~l~  265 (361)
                                                ...+..   ++ ...++.+...+++++.++|..|+.+++.++.+. +.....++
T Consensus       330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l  405 (458)
T d1ibrb_         330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  405 (458)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred             hcchhhhccccccHHHHHHHHHHHHHHhccHh---hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH
Confidence                                      211110   00 112355667778889999999999999998642 22211111


Q ss_pred             hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       266 ~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                       ..+++.++.+|.++   +..+|..|+++|..++...+
T Consensus       406 -~~i~~~l~~~l~d~---~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         406 -IQAMPTLIELMKDP---SVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             -TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHGG
T ss_pred             -HHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence             35789999999988   99999999999999986554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.0028  Score=57.91  Aligned_cols=157  Identities=10%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164        143 LPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECL  219 (361)
Q Consensus       143 ~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~  219 (361)
                      ++.++..+.+  .+..++..++.+++.++...+.....-.-...++.++..+.+ +.+..+|..|+.++..++.......
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  208 (458)
T d1ibrb_         129 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  208 (458)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence            3445555544  456778888888888876543322211223467788888865 3467899999999999987654432


Q ss_pred             H-HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164        220 K-EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  298 (361)
Q Consensus       220 ~-~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L  298 (361)
                      . .......++.+..++.+++.+++..++.++..++...+......+...+...+...+.+.   +..++..++..+..+
T Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         209 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNV  285 (458)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHH
Confidence            2 122234567788888899999999999999999876554332222333444555666776   888888899888887


Q ss_pred             HhcC
Q psy14164        299 IKDS  302 (361)
Q Consensus       299 ~~~~  302 (361)
                      ....
T Consensus       286 ~~~~  289 (458)
T d1ibrb_         286 CDEE  289 (458)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.028  Score=50.73  Aligned_cols=171  Identities=12%  Similarity=0.135  Sum_probs=114.6

Q ss_pred             HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC---cHHHHHHhhccCCHHHHHHHHHH
Q psy14164        173 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD---GFSVLLRCIQSKKEKLVIKSCFL  249 (361)
Q Consensus       173 ~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g---gi~~Lv~lL~s~~~~v~~kA~~l  249 (361)
                      +.....++....+..+.+.+.. ++-.+...|...+-.+...++.....|+..+   -+.....+|.+++.-+|+.+.-+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3344455555556666666664 4667888888888887777787778888766   34566788999999999999999


Q ss_pred             HHHHhcCCc--hHH-HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC---hHHHHhhccCcchHHHHHHHH
Q psy14164        250 IACLCTDNN--QVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS---PEAQSLCRLEPLNLKFKLNFI  323 (361)
Q Consensus       250 l~~L~~~~~--~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~---~~~~~~~~~~~l~l~~~Le~~  323 (361)
                      ++.|+....  ... +++-+..-+..++.+|++.   +..++-.|...+.-.+...   +.....-...+-.|...|.+-
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~---sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc---hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            999997522  222 3444456689999999998   8999999999888887644   233332222222333444433


Q ss_pred             HHhhcChhhhHHHHHHHHHHHHHh
Q psy14164        324 KEKHAGNEVYHKELEYVNSVLTEV  347 (361)
Q Consensus       324 ~~~l~~~~e~~~e~~~~~~il~~~  347 (361)
                      ...-...+.+.+|..|.-+.++..
T Consensus       301 ~~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         301 QNDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             TTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCchhhHHHHHHHHHHHHHhC
Confidence            211122457888888777777654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0021  Score=63.99  Aligned_cols=212  Identities=11%  Similarity=0.086  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHH--H----------HHHCCCHHHHHH
Q psy14164         82 RGFLLDALNSMMV-NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAN--D----------FLKMGGLPVLQP  148 (361)
Q Consensus        82 ~~~L~eal~~~~~-~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~--~----------~~~~Gg~~~Lv~  148 (361)
                      |+-=+..|.++.. +...-+...+.++.+.+.+.+.|..|+-.|...+...+...  .          =.+...-..++.
T Consensus        18 r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~   97 (876)
T d1qgra_          18 LEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLH   97 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHH
Confidence            3333444444442 33566777888888877777888888888877764332110  0          001112356777


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH-h--cChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChh-hHHHHH
Q psy14164        149 LLEGSDPELRWRAAETVADIVQNNPFSQNFII-Q--TDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEE-CLKEFI  223 (361)
Q Consensus       149 LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~--~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~-~~~~f~  223 (361)
                      +|.+++. ++..++.+|+.++...      +- +  -+.+|.|++.+.+ +....++..++.+|+.++....+ ......
T Consensus        98 ~l~~~~~-~~~~~a~~i~~i~~~~------~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~  170 (876)
T d1qgra_          98 TLGTETY-RPSSASQCVAGIACAE------IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS  170 (876)
T ss_dssp             HTTTCCS-SSCHHHHHHHHHHHHH------GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred             HhcCCcH-HHHHHHHHHHHHHHHH------CCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            8877664 5667899999988531      11 1  2689999998865 34467888899999999864332 222221


Q ss_pred             hhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHH-HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        224 KRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       224 ~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                       ...++.++..+.+.  +..++..|..++.++........ ......-+++.+...+.++   +.+++..++.+|..+..
T Consensus       171 -~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         171 -NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             -HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence             34577888888654  57899999888888765422111 1111122467777888888   89999999999999998


Q ss_pred             cChH
Q psy14164        301 DSPE  304 (361)
Q Consensus       301 ~~~~  304 (361)
                      ..+.
T Consensus       247 ~~~~  250 (876)
T d1qgra_         247 LYYQ  250 (876)
T ss_dssp             HSGG
T ss_pred             HhHH
Confidence            7654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.027  Score=51.57  Aligned_cols=149  Identities=17%  Similarity=0.245  Sum_probs=108.5

Q ss_pred             cCcccHHHHHHCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC
Q psy14164        129 CSIDYANDFLKMGGLPVLQPLLEG-----------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN  197 (361)
Q Consensus       129 e~idna~~~~~~Gg~~~Lv~LL~s-----------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~  197 (361)
                      +.+++-..| ..+|+..|+.+|..           .+..+...+.+||..+..+.+.....+-..+++..|...|.+ +.
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~  111 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AV  111 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TS
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCC-Cc
Confidence            466777788 46788888887741           125678889999998886655555555666899999999986 67


Q ss_pred             HHHHHHHHHHHHHHhcC------ChhhHHHHH------hhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCc------
Q psy14164        198 TTVQVKSLYAVSCLVRE------NEECLKEFI------KRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN------  258 (361)
Q Consensus       198 ~~v~~~Al~ALS~l~r~------~~~~~~~f~------~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~------  258 (361)
                      ..+|+-|+-.|+.+|--      +.....+|-      +.+-+..++..|++. +...+..+..+|..|+.+.+      
T Consensus       112 ~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~  191 (343)
T d2bnxa1         112 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  191 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHH
Confidence            89999999999988842      233333331      234568889888765 68999999999999998755      


Q ss_pred             hHHHHHHhCCcHHHHHHhccCC
Q psy14164        259 QVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       259 ~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..|..+...|+.+.+-.+ +..
T Consensus       192 ~lR~E~~~~Gl~~il~~l-~~~  212 (343)
T d2bnxa1         192 HIRSELMRLGLHQVLQEL-REI  212 (343)
T ss_dssp             HHHHHHHHTTHHHHHHHH-TTC
T ss_pred             HHHHHHHHCChHHHHHHH-Hcc
Confidence            357788889887655554 443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.021  Score=56.15  Aligned_cols=190  Identities=11%  Similarity=0.112  Sum_probs=117.3

Q ss_pred             CHHHHHHHHHHHHHhhcCcccHHHHHHCC---CHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHHHHH-HHhcChHH
Q psy14164        113 QKDICIGALDNLSDYICSIDYANDFLKMG---GLPVLQPLL--EGSDPELRWRAAETVADIVQNNPFSQNF-IIQTDFLN  186 (361)
Q Consensus       113 ~~~~~~~Al~~L~~lve~idna~~~~~~G---g~~~Lv~LL--~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~-v~~~g~l~  186 (361)
                      +...+..|+..|..+++..+......-..   .+..++..+  ...+..+|..|..+++++...-+..... ......++
T Consensus       148 ~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  227 (861)
T d2bpta1         148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ  227 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHH
Confidence            35667788888988887765432211111   123334433  3466899999999999998765543221 11223566


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHH-
Q psy14164        187 LLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL-  265 (361)
Q Consensus       187 ~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~-  265 (361)
                      .|...+.+ .++.++..++.++..++..++.....++..-....+.....+.+..++..+..++..++........... 
T Consensus       228 ~l~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  306 (861)
T d2bpta1         228 VVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ  306 (861)
T ss_dssp             HHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777775 6789999999999999987666555554443445556667788999999999888887643211111110 


Q ss_pred             ---------------hCCcHHHHHHhccCC----CCCChhHHHHHHHHHHHHHhcCh
Q psy14164        266 ---------------SMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       266 ---------------~~g~i~~Lv~lL~~~----~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                                     -..+++.+...+...    .+.+...+..+..++..+....+
T Consensus       307 ~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  363 (861)
T d2bpta1         307 FPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG  363 (861)
T ss_dssp             CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc
Confidence                           012455566666543    12234566667777766665443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.013  Score=57.96  Aligned_cols=157  Identities=8%  Similarity=0.142  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHC-CCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHH
Q psy14164         98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKM-GGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPF  174 (361)
Q Consensus        98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~-Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~  174 (361)
                      +.+...+..+.+++.+...+..++..|..+++..+........ ..++.++..+.+  ++..+|..|..++.+.....+.
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4566666666666666677888999999888765533211111 236778887765  4578999999999998876544


Q ss_pred             HHHHHH-hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164        175 SQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  253 (361)
Q Consensus       175 ~q~~v~-~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L  253 (361)
                      ...... ..-.++.+...+.+ ++..++..++.++..++..++.....++.....+.+...+.+....++..+..++..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            322111 11245556666664 6789999999999999988877766666666677788888888999999988888777


Q ss_pred             hc
Q psy14164        254 CT  255 (361)
Q Consensus       254 ~~  255 (361)
                      +.
T Consensus       287 ~~  288 (876)
T d1qgra_         287 CD  288 (876)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.45  E-value=0.29  Score=44.12  Aligned_cols=180  Identities=15%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC----CCHH
Q psy14164         81 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG----SDPE  156 (361)
Q Consensus        81 ~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s----~~~~  156 (361)
                      -|+|+.+|+......+.  ++-..+.+.+...+..+....+..|..... . +..      .+..+..++.+    .++.
T Consensus        73 ~r~~~lDal~~~GT~~a--~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~-P-t~~------~l~~~~~l~~~~~~~~~~~  142 (336)
T d1lsha1          73 YRRWILDAVPAMATSEA--LLFLKRTLASEQLTSAEATQIVASTLSNQQ-A-TRE------SLSYARELLNTSFIRNRPI  142 (336)
T ss_dssp             HHHHHHHHHHHHCSHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHTCC-C-CHH------HHHHHHHHHTCHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCHHH--HHHHHHHHHcCCCCHHHHHHHHHHHhccCC-C-CHH------HHHHHHHHHcCcccccchh
Confidence            46677777666643332  222333344444454555555555544332 1 111      24455566665    5788


Q ss_pred             HHHHHHHHHHHHhhc----CHHHHHHHHhcChHHHHHHhhc---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH
Q psy14164        157 LRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS  229 (361)
Q Consensus       157 vr~~Aa~~Lg~iaqn----n~~~q~~v~~~g~l~~Ll~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~  229 (361)
                      ++..+.-.+|+++..    ++.|.+     ..++.+...+.   +..+..-+..++-||+|+  |++..         ++
T Consensus       143 l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~---------i~  206 (336)
T d1lsha1         143 LRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--GQPNS---------IK  206 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGG---------HH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc--CCHhH---------HH
Confidence            999999999988753    222222     23444444442   124556677889999998  45544         44


Q ss_pred             HHHHhhcc-------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        230 VLLRCIQS-------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       230 ~Lv~lL~s-------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                      .|..++.+       .+..+|..|.+++..+....|....        +.+..++... ..+.++|..|...|
T Consensus       207 ~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~-~e~~EvRiaA~~~l  270 (336)
T d1lsha1         207 KIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNV-AIKSELRIRSCIVF  270 (336)
T ss_dssp             HHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCC-CCChHHHHHHHHHH
Confidence            45555532       2689999999999999887664322        2233333332 22788888877766

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.12  Score=48.84  Aligned_cols=156  Identities=14%  Similarity=0.077  Sum_probs=106.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF  222 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f  222 (361)
                      ++++..+|.+++.-+...++.+++.+++..+......-..--+..++..+....+.....-++.+++.+.|. ++-...|
T Consensus       124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~f  202 (477)
T d1ho8a_         124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVI  202 (477)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHH
Confidence            466777888888888899999999998875543332211111122333343445677888888999999984 5566666


Q ss_pred             Hh--hCcHHHHHHhhcc-----------------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCC--cHHHHHHhccCCC
Q psy14164        223 IK--RDGFSVLLRCIQS-----------------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMG--MVEQMCVLIDIED  281 (361)
Q Consensus       223 ~~--~ggi~~Lv~lL~s-----------------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g--~i~~Lv~lL~~~~  281 (361)
                      ..  ...++.|+.+|..                 ....++=.+++++.-|.. ++.....+.+.+  .|+.++++++.. 
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s-  280 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKIT-  280 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHC-
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhh-
Confidence            53  2345555555542                 135778889988887766 566777777764  488999998654 


Q ss_pred             CCChhHHHHHHHHHHHHHhcC
Q psy14164        282 ALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       282 ~~d~~~~e~al~aL~~L~~~~  302 (361)
                       .-.++...++.+|.+++...
T Consensus       281 -~KEKvvRv~l~~l~Nll~~~  300 (477)
T d1ho8a_         281 -IKEKVSRLCISIILQCCSTR  300 (477)
T ss_dssp             -CSHHHHHHHHHHHHHTTSSS
T ss_pred             -hHHHHHHHHHHHHHHHhhhh
Confidence             16788888999999998653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.17  E-value=0.001  Score=58.20  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHH-----Hh-hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHH-----HH
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVAD-----IV-QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS-----CL  211 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~-----ia-qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS-----~l  211 (361)
                      +..|+.|++.+++.||..|+..|+.     +. -.++.++..+...=..+.|..++.. ++..||..++.+++     -+
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D-~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAAD-RDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTC-SSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcC-CCHHHHHHHHhccchhHHHHH
Confidence            5556666666666666666654431     11 1133333333332223445555553 56667666655422     12


Q ss_pred             hcC-ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHH
Q psy14164        212 VRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL  249 (361)
Q Consensus       212 ~r~-~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~l  249 (361)
                      +.+ ++.....+...-+.+.|..++++.+..|+..++..
T Consensus       147 ~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            222 22223333344455666666777777777776653

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.87  E-value=0.094  Score=41.67  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  213 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r  213 (361)
                      ++..|.+-|+|+++.++..|+.+|-.++.|. +..+..+...+.+..|.+++.+.++..|+.+++..|-.-..
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3556677789999999999999999999995 66788888889999999999876778899999888877654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.097  Score=49.64  Aligned_cols=165  Identities=12%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             ccHHHHHHC--CCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCH-----HHHHHHHhcChHHHHHHhhccC--CCHHHH
Q psy14164        132 DYANDFLKM--GGLPVLQPLLE-GSDPELRWRAAETVADIVQNNP-----FSQNFIIQTDFLNLLLTSIEHD--SNTTVQ  201 (361)
Q Consensus       132 dna~~~~~~--Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~-----~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~  201 (361)
                      +.+..+.+.  +-++.|+.+++ ++-..|-.-++.++-|++....     .+...++..++++. +..|...  .|+.+.
T Consensus       257 ~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~  335 (477)
T d1ho8a_         257 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELR  335 (477)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHH
Confidence            344455443  23777888774 6778888888999999986422     23344566677665 4555432  344432


Q ss_pred             HHHHHHHHHH----------------------hcCChhhH-HHHHh--------hC--cHHHHHHhhc----------cC
Q psy14164        202 VKSLYAVSCL----------------------VRENEECL-KEFIK--------RD--GFSVLLRCIQ----------SK  238 (361)
Q Consensus       202 ~~Al~ALS~l----------------------~r~~~~~~-~~f~~--------~g--gi~~Lv~lL~----------s~  238 (361)
                       ..+-.|..+                      .+=+|.-. ..|=.        .+  .+..|+++|.          +.
T Consensus       336 -edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~  414 (477)
T d1ho8a_         336 -QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ  414 (477)
T ss_dssp             -HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred             -HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCC
Confidence             223333322                      22233322 22322        22  3568888886          34


Q ss_pred             CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164        239 KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  301 (361)
Q Consensus       239 ~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~  301 (361)
                      |+.+..-||+=|..++...|.-+..+.+.|+=..+++++.++   |++++..||.|+..++..
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS---DSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS---SHHHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHHh
Confidence            788899999999999999999999999999999999999998   999999999999988754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.41  E-value=0.0091  Score=51.88  Aligned_cols=126  Identities=13%  Similarity=0.036  Sum_probs=67.3

Q ss_pred             HhhcCCCHHHHHHHHHH------HHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164        148 PLLEGSDPELRWRAAET------VADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE  221 (361)
Q Consensus       148 ~LL~s~~~~vr~~Aa~~------Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~  221 (361)
                      .+|.|+..++|..|++-      +.-+.-.++.++..+...=+.+.|..++. +++..||..++..+             
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~-D~d~~VR~~aa~~l-------------  114 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMF-DEDREVRITVADRL-------------  114 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTT-CSCHHHHHHHHHHS-------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhc-CCChhHHHHHHhcc-------------
Confidence            48899999999888762      22222234445544443211223333433 24455555544433             


Q ss_pred             HHhhCcHHHHHHhhccCCHHHHHHHHHH-----HHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164        222 FIKRDGFSVLLRCIQSKKEKLVIKSCFL-----IACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  295 (361)
Q Consensus       222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~l-----l~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL  295 (361)
                           ..+.|..++.+++..||..++..     +.-|+.. ++.++..+...-..+.|..+++.+   +..++..++..|
T Consensus       115 -----~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~---d~~VR~~aa~~L  186 (233)
T d1lrva_         115 -----PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDP---EPEVRRIVASRL  186 (233)
T ss_dssp             -----CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCS---SHHHHHHHHHHC
T ss_pred             -----CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCC---CHHHHHHHHHhc
Confidence                 23455566666677777666543     1112221 344555554433455666777766   778887777653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.24  E-value=0.52  Score=42.33  Aligned_cols=173  Identities=15%  Similarity=0.198  Sum_probs=107.3

Q ss_pred             CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhc----Cc-ccHHHHHHCCCHHHHHH----hhcCCCHHHHHHHH
Q psy14164         94 VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYIC----SI-DYANDFLKMGGLPVLQP----LLEGSDPELRWRAA  162 (361)
Q Consensus        94 ~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve----~i-dna~~~~~~Gg~~~Lv~----LL~s~~~~vr~~Aa  162 (361)
                      ....+.|+.....+.+..  .....+..++-.+..++.    +. +..+.     .++.+..    .++..+.+-+..++
T Consensus       119 ~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~L  193 (336)
T d1lsha1         119 QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLAL  193 (336)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHH
Confidence            444667777777665532  223333444444443332    11 11121     2333333    45567778888899


Q ss_pred             HHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164        163 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ  236 (361)
Q Consensus       163 ~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~------~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~  236 (361)
                      ++|||+-  .|         +.++.|..++..      ..+..+|..|+||+..+....|.....+        +..++.
T Consensus       194 kaLGN~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~--------l~~i~~  254 (336)
T d1lsha1         194 KALGNAG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI--------VLPIFL  254 (336)
T ss_dssp             HHHHHHT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH--------HHHHHH
T ss_pred             HHHhccC--CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHH--------HHHHHc
Confidence            9999985  34         356777777753      2356899999999999988766543333        244443


Q ss_pred             c--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164        237 S--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       237 s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~  302 (361)
                      .  .+..+|..|..++-.   ..|.       ...+..+...|..+  .+.++.-.+...|.+++...
T Consensus       255 n~~e~~EvRiaA~~~lm~---t~P~-------~~~l~~i~~~l~~E--~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         255 NVAIKSELRIRSCIVFFE---SKPS-------VALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             CTTSCHHHHHHHHHHHHH---TCCC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCChHHHHHHHHHHHh---cCCC-------HHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCC
Confidence            3  378898888877643   2342       13567777877654  37889999999999998744

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.21  Score=39.57  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhcCCh
Q psy14164        143 LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRENE  216 (361)
Q Consensus       143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r~~~  216 (361)
                      +..|.+=|.|.++.+...|+.+|-.++.| .+.++..+.+.+.+..|++++..     ..+..|+.+++..|-.-..+++
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            45566667899999999999999999999 59999999999999999999963     2466899999988877665543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.21  Score=39.53  Aligned_cols=74  Identities=9%  Similarity=-0.012  Sum_probs=61.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhcCC
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      ++..|.+=|.|+++.++..|+.+|-.++.|. +.++..+.....+..|++++..     ..+..|+.+++..|-+....+
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3455666678999999999999999999995 8999999999999999999973     246789999998887776544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=2.5  Score=37.46  Aligned_cols=152  Identities=14%  Similarity=0.223  Sum_probs=112.0

Q ss_pred             HHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC---hHHHHHHhhccCCCHHH
Q psy14164        124 LSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEHDSNTTV  200 (361)
Q Consensus       124 L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g---~l~~Ll~LL~~~~~~~v  200 (361)
                      |.+++..-.-+.-+.....+..+..+.+.++=+|-.-|...+-.+-+.++..-..++..+   .+..+-+||.+ .+-.+
T Consensus       138 LREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s-~NYVt  216 (330)
T d1upka_         138 LRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVT  216 (330)
T ss_dssp             HHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHH
T ss_pred             HHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcC-CchHH
Confidence            333333333344455556677788888899999999999999999999988777777654   56777788886 57899


Q ss_pred             HHHHHHHHHHHh--cCChhhHHHHHhh-CcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCC--cHHH
Q psy14164        201 QVKSLYAVSCLV--RENEECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMG--MVEQ  272 (361)
Q Consensus       201 ~~~Al~ALS~l~--r~~~~~~~~f~~~-ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g--~i~~  272 (361)
                      |+.++--|+.+.  |.|-.....++.. .-+..++.+|++.+..+|.+|-..+.-++.+   .+.....++...  ++..
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~f  296 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  296 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHH
Confidence            999999999998  5555556666643 3688999999999999999999999888876   234555555442  3444


Q ss_pred             HHHh
Q psy14164        273 MCVL  276 (361)
Q Consensus       273 Lv~l  276 (361)
                      |-++
T Consensus       297 l~~f  300 (330)
T d1upka_         297 LSKF  300 (330)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            4444

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.56  Score=37.22  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=61.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhcCC
Q psy14164        142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVREN  215 (361)
Q Consensus       142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r~~  215 (361)
                      ++..|-+=|.+.++.++..|+.+|-.++.|. +.++..+.....+..|++++..     ..+..|+.+.+..|-.-...+
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            3555666678999999999999999999995 7788888888999999999964     235689999998888876654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.48  Score=37.36  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=82.5

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHH
Q psy14164        185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQV  263 (361)
Q Consensus       185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~  263 (361)
                      +..++.-..++...+.-..++-.|+-+++..+....     .++..|..=|+++++.++..|..++-.++.+ ++.+...
T Consensus         9 ~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~e   83 (145)
T d1ujka_           9 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE   83 (145)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344444444332222335677888888887654322     2455677778899999999999999999988 6899999


Q ss_pred             HHhCCcHHHHHHhccCC---CCCChhHHHHHHHHHHHHHhcCh
Q psy14164        264 LLSMGMVEQMCVLIDIE---DALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       264 l~~~g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      +.+.+++..|+.++...   +..+..++++++..|..-....|
T Consensus        84 vas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          84 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            99999999999998631   11267899999999987765544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.62  E-value=0.77  Score=45.58  Aligned_cols=137  Identities=13%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-CCHHHHHHHHHHHHHHhcCC-----
Q psy14164        143 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVREN-----  215 (361)
Q Consensus       143 ~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-~~~~v~~~Al~ALS~l~r~~-----  215 (361)
                      ++.|..+| .+.+++.|..|-.-|-.+- ++|         |.+..|++++.+. .+..+|..|+-.+-|.++.+     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            45677766 4678888999888887764 444         6777788887654 35689999999998887631     


Q ss_pred             -----hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHH
Q psy14164        216 -----EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE  289 (361)
Q Consensus       216 -----~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e  289 (361)
                           ++..+..++.    .|+.+|.+++..+|...+.+|+.++.. .|..-     -++++.|++++.++   +...+.
T Consensus        74 ~~~~i~~e~k~~Ik~----~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~---~~~~~~  141 (959)
T d1wa5c_          74 GNHLLPANNVELIKK----EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSND---DMVTNK  141 (959)
T ss_dssp             SCBSSCHHHHHHHHH----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSS---CTTHHH
T ss_pred             ccCCCCHHHHHHHHH----HHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCC---CHHHHH
Confidence                 2233444433    445555667889999999999998864 23211     25788899999988   888999


Q ss_pred             HHHHHHHHHHhc
Q psy14164        290 HLLSALASLIKD  301 (361)
Q Consensus       290 ~al~aL~~L~~~  301 (361)
                      .++.+|..+++.
T Consensus       142 ~~L~~l~~i~k~  153 (959)
T d1wa5c_         142 GVLTVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHH
Confidence            999999988864

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.33  Score=38.27  Aligned_cols=97  Identities=10%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..++-.|+-+++..+..-.     ..+..|..=|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        19 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k   93 (143)
T d1mhqa_          19 WSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK   93 (143)
T ss_dssp             HHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence            4566777777765544322     2445677778899999999999999999887 688999999999999999998742


Q ss_pred             ---CCCChhHHHHHHHHHHHHHhcCh
Q psy14164        281 ---DALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       281 ---~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                         ...+..++++++..|...+...+
T Consensus        94 ~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          94 YLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence               12377899999999987776443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.24  E-value=0.43  Score=47.51  Aligned_cols=179  Identities=11%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH------------HHHHHhc
Q psy14164        115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS------------QNFIIQT  182 (361)
Q Consensus       115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~------------q~~v~~~  182 (361)
                      ..+..++..+..+++... ...+.  ..++.++.+|.+++..||..|++++..++......            +..+  .
T Consensus       473 ~lr~~~~~~i~~~~~~~~-~~~~~--~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l--~  547 (959)
T d1wa5c_         473 ILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST--E  547 (959)
T ss_dssp             HHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH--H
T ss_pred             HHHHHHHHHHHHHHhhcc-HHHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH--H
Confidence            345556666666654332 22332  24888899999999999999999999998542211            1011  1


Q ss_pred             ChHHHHHHhhccCCCHH----HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh----cc-CCHHHHHHHHHHHHHH
Q psy14164        183 DFLNLLLTSIEHDSNTT----VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI----QS-KKEKLVIKSCFLIACL  253 (361)
Q Consensus       183 g~l~~Ll~LL~~~~~~~----v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL----~s-~~~~v~~kA~~ll~~L  253 (361)
                      ..+..|+..+.......    +...++.+|+.++.........+. ...++.|..++    +. .+......+.-+|+.+
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l  626 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            23445555554322111    123466677766543222211121 11233333333    22 2577777777788887


Q ss_pred             hcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164        254 CTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP  303 (361)
Q Consensus       254 ~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~  303 (361)
                      +.. +++....+ ...+++.+...+..+   ..++.+.++..+..+...++
T Consensus       627 ~~~~~~~~~~~l-~~~l~p~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         627 LNYTQRQNLPLL-VDSMMPTFLTVFSED---IQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHTSCGGGHHHH-HHHHHHHHHHHHHTT---CTTTHHHHHHHHHHHHHHCS
T ss_pred             HHhcCchhHHHH-HHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHhCC
Confidence            764 44444333 345677777888776   77788888888887776553

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.07  E-value=1.6  Score=39.06  Aligned_cols=108  Identities=11%  Similarity=0.126  Sum_probs=77.3

Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhhCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcC
Q psy14164        189 LTSIEHDSNTTVQVKSLYAVSCLVRENE-ECLKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTD  256 (361)
Q Consensus       189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~-~~~~~f~~~ggi~~Lv~lL~s-----------~~~~v~~kA~~ll~~L~~~  256 (361)
                      +..|.+.....-..+.+..|.--.|.++ ...+.| ..+|+..|+.+|..           .+...+..+..++..|+..
T Consensus         8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~   86 (343)
T d2bnxa1           8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   86 (343)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence            3444443333333444555544456544 457778 68899999888741           1467888999999999886


Q ss_pred             CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164        257 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  300 (361)
Q Consensus       257 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~  300 (361)
                      ..-....+...+++..++..|.++   ...++..|+..|..++.
T Consensus        87 ~~G~~~vl~~~~~i~~l~~~L~s~---~~~tr~~a~elL~~lc~  127 (343)
T d2bnxa1          87 KFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCI  127 (343)
T ss_dssp             HHHHHHHHHSSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcChHHHHHHHHccCCC---chHHHHHHHHHHHHHHh
Confidence            655666677778999999999998   99999999999988774

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.57  E-value=0.46  Score=37.37  Aligned_cols=94  Identities=9%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..++-.|+.+++..+....     ..+..|..-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|..++++.
T Consensus        23 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~   97 (145)
T d1dvpa1          23 WPSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST   97 (145)
T ss_dssp             HHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCC
Confidence            5677778888876554322     2455777888999999999999999999887 577788888888999999988654


Q ss_pred             CCCChhHHHHHHHHHHHHHhcC
Q psy14164        281 DALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ~~~d~~~~e~al~aL~~L~~~~  302 (361)
                        .+..++++++..+.......
T Consensus        98 --~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          98 --PHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHHHHHHHh
Confidence              26789999999888777543

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.91  Score=35.91  Aligned_cols=96  Identities=9%  Similarity=0.120  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164        202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  280 (361)
Q Consensus       202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~  280 (361)
                      ..++..|+-+++..+...+     .++..|..=|.+.++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        20 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k   94 (151)
T d1juqa_          20 WEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK   94 (151)
T ss_dssp             HHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHccc
Confidence            4556667777765543322     3455677778889999999999999999887 678888888899999999999742


Q ss_pred             ---CCCChhHHHHHHHHHHHHHhcC
Q psy14164        281 ---DALDTEMNEHLLSALASLIKDS  302 (361)
Q Consensus       281 ---~~~d~~~~e~al~aL~~L~~~~  302 (361)
                         +..+..++++++..|..-+...
T Consensus        95 ~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          95 YLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHc
Confidence               1125679999999888777544

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.98  E-value=11  Score=30.80  Aligned_cols=167  Identities=7%  Similarity=-0.065  Sum_probs=98.4

Q ss_pred             CCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC-CCH
Q psy14164         77 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG-SDP  155 (361)
Q Consensus        77 ~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s-~~~  155 (361)
                      ..|++|+..++.+......+.+.+.+.+..|-+. .--|.+..|+.-|.......+. .+      ++.+..++.+ ++=
T Consensus        28 ~~P~~r~laK~~~k~~~~~~~~~~~~l~~~L~~~-~~~E~r~~a~~ll~~~~~~~~~-~~------l~~~~~~~~~~~~W   99 (213)
T d2b6ca1          28 PAPERQALSKQLLKESHTWPKEKLCQEIEAYYQK-TEREYQYVAIDLALQNVQRFSL-EE------VVAFKAYVPQKAWW   99 (213)
T ss_dssp             CHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHTGGGCCH-HH------HHHGGGGTTTTCSH
T ss_pred             ChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHhccCH-HH------HHHHHHHHccCccH
Confidence            3478888888888887644455556666655542 2358889998888777654332 11      3444445544 444


Q ss_pred             HHHHHHHHHH-HHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh
Q psy14164        156 ELRWRAAETV-ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC  234 (361)
Q Consensus       156 ~vr~~Aa~~L-g~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l  234 (361)
                      ++....+..+ +.+..+.+         ...+.+.....+ .+.=+|+.|+-+.=.-.+...  ...     .+..+..+
T Consensus       100 d~vD~~~~~i~~~~~~~~~---------~~~~~l~~w~~s-~~~w~rR~aiv~~l~~~~~~~--~~~-----~~~~~~~~  162 (213)
T d2b6ca1         100 DSVDAWRKFFGSWVALHLT---------ELPTIFALFYGA-ENFWNRRVALNLQLMLKEKTN--QDL-----LKKAIIYD  162 (213)
T ss_dssp             HHHHHHHHHHHHHHHHSGG---------GHHHHHHHHTTC-SSHHHHHHHHHTTTTCGGGCC--HHH-----HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHccc--HHH-----HHHHHHHh
Confidence            5555444444 33443322         233445555554 566777765443311111111  111     23455666


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC
Q psy14164        235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG  268 (361)
Q Consensus       235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g  268 (361)
                      +.+++.-||+-..|+|..+...+|+....+++..
T Consensus       163 ~~d~e~~i~kAigW~Lre~~k~~p~~v~~fl~~~  196 (213)
T d2b6ca1         163 RTTEEFFIQKAIGWSLRQYSKTNPQWVEELMKEL  196 (213)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHHHHHHHHHCHHHHHHHHHhC
Confidence            7788899999999999999988887766665544

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.46  E-value=7.4  Score=30.28  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHH-HHhhcc--CCCHHHHHHHHHHHHHHh
Q psy14164        143 LPVLQPLL-EGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLL-LTSIEH--DSNTTVQVKSLYAVSCLV  212 (361)
Q Consensus       143 ~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~L-l~LL~~--~~~~~v~~~Al~ALS~l~  212 (361)
                      +..|.+=| ++.++.++..|+.+|-.++.|. +..+..+.+.+.+..+ +..+..  ..+..|+.+++..|-+..
T Consensus        51 ~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li~~W~  125 (153)
T d1elka_          51 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA  125 (153)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            44555544 5678999999999999999994 7888889888888775 444443  244579999988887764