Psyllid ID: psy14166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQYNSRAFTLLWDLW
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHcccccccccccEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEcHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHccccEEEEccHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccEEEEccccccccHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEHccccccccHHHEccEHHHHcccccccccccEEEEccccccHHHHHHHHHHHHcccEEEcccEEcccccccccEcccEEEccHHHHHHHHHHccEEEEEEEccEEEEEEHHHHHHHHHcccEEEEEccHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mragiipskALQERKILHerslmengdtnsnpslgpcgprldaaciplvkiadtvysspskaksptglscsaAVKTKKIIYDlaetddfdreeiptyeevaklypmetlrrpvvligpsgvgrsELKRRLialdpdkftqvtpyttrpkkpgeedgkeyhFVSHETMTSLISAgkmiefgeykghlygtssDSVLELVNSgrvavlnpayqslkvlrspafkplvlfiapppfaalkesritafarspfdqynsRAFTLLWDLW
Flexible Loop (DISEMBL)
mragiipskalqeRKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVysspskaksptglscsaavkTKKIIYDlaetddfdreeIPTYEEvaklypmetlrrpvvligpsgvgrselkrrlialdpdkftqvtpyttrpkkpgeedgkeyHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAfarspfdqynSRAFTLLWDLW
Low Complexity Region (SEG)
MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQYNSRAFTLLWDLW
Disordered region (IsUnstruct)
**************************************PRLDAACIPLVKIADTVY***********LSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFT*******************YHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQYNSRAFTLLWDL*
Disordered Region (DISOPRED)
MRAGIIPSKALQERKILHERS******************************************************************DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK***EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFA********************RAFTL***LW
Disordered Region (DISEMBL)
MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVY*************CSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQYNSRAFTLLWDLW
Disordered Region (DISPRO)
***GIIPSKALQERKILHERSLMENG********************PLV*IADTVYSSPS*************VKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA****PFDQYNSRAFTLLWDLW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQYNSRAFTLLWDLW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9JLB0	553	MAGUK p55 subfamily membe	yes	N/A	0.609	0.291	0.478	3e-37
Q8N3R9	675	MAGUK p55 subfamily membe	yes	N/A	0.602	0.235	0.433	8e-37
Q8JHF4	677	MAGUK p55 subfamily membe	yes	N/A	0.594	0.231	0.452	8e-37
Q5RDQ2	675	MAGUK p55 subfamily membe	yes	N/A	0.602	0.235	0.433	9e-37
Q9JLB2	675	MAGUK p55 subfamily membe	no	N/A	0.602	0.235	0.433	1e-36
Q9NZW5	540	MAGUK p55 subfamily membe	no	N/A	0.560	0.274	0.493	1e-35
Q6P0D7	576	MAGUK p55 subfamily membe	no	N/A	0.882	0.404	0.353	1e-33
Q9WV34	552	MAGUK p55 subfamily membe	no	N/A	0.609	0.291	0.447	2e-33
Q14168	576	MAGUK p55 subfamily membe	no	N/A	0.609	0.279	0.441	2e-33
P70290	466	55 kDa erythrocyte membra	no	N/A	0.659	0.373	0.415	5e-33

>sp|Q9JLB0|MPP6_MOUSE MAGUK p55 subfamily member 6 OS=Mus musculus GN=Mpp6 PE=1 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 105/163 (64%), Gaps = 2/163 (1%)

Query: 75  KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
           K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct: 318 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 375

Query: 135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
           P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct: 376 PARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 435

Query: 195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
           LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct: 436 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLR 478

Mus musculus (taxid: 10090)

>sp|Q8N3R9|MPP5_HUMAN MAGUK p55 subfamily member 5 OS=Homo sapiens GN=MPP5 PE=1 SV=3

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query: 79  IIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKF 138
           ++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  + D+F
Sbjct: 448 VLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRF 507

Query: 139 TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELV 198
               P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV +++
Sbjct: 508 ASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVI 567

Query: 199 NSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
           NSG++ +L+   QSLK LR+   KP ++FIAPP    L+
Sbjct: 568 NSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLR 606

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q8JHF4|MPP5A_DANRE MAGUK p55 subfamily member 5-A OS=Danio rerio GN=mpp5a PE=1 SV=2

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 107/157 (68%)

Query: 81  YDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQ 140
           Y+  + DDFD EEI TYEE+A  +     +RP+ LIGP   G++EL++RL++ +PD+F  
Sbjct: 452 YNANKNDDFDNEEILTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSTEPDRFAG 511

Query: 141 VTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNS 200
             P+TTR ++  E +G++YHFVS +      +AGK IE GE++ + YGTS+DSV +++N+
Sbjct: 512 PVPHTTRSRRDAEANGRDYHFVSRQAFEMDSAAGKFIESGEFEKNFYGTSTDSVRQVINT 571

Query: 201 GRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
           G++ +L    QSLKVLRS   KP ++FIAPP    L+
Sbjct: 572 GKICLLCVHTQSLKVLRSSDLKPYIIFIAPPSQERLR 608

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells (By similarity). Functions in cellular patterning of the retina.

Danio rerio (taxid: 7955)

>sp|Q5RDQ2|MPP5_PONAB MAGUK p55 subfamily member 5 OS=Pongo abelii GN=MPP5 PE=2 SV=1

 Score =  154 bits (388), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query: 79  IIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKF 138
           ++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  + D+F
Sbjct: 448 VLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRF 507

Query: 139 TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELV 198
               P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV +++
Sbjct: 508 ASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVI 567

Query: 199 NSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
           NSG++ +L+   QSLK LR+   KP ++FIAPP    L+
Sbjct: 568 NSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLR 606

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|Q9JLB2|MPP5_MOUSE MAGUK p55 subfamily member 5 OS=Mus musculus GN=Mpp5 PE=1 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query: 79  IIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKF 138
           ++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  + D+F
Sbjct: 448 VLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRF 507

Query: 139 TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELV 198
               P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV +++
Sbjct: 508 ASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVI 567

Query: 199 NSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
           NSG++ +L+   QSLK LR+   KP ++FIAPP    L+
Sbjct: 568 NSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLR 606

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q9NZW5|MPP6_HUMAN MAGUK p55 subfamily member 6 OS=Homo sapiens GN=MPP6 PE=1 SV=2

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 99/150 (66%), Gaps = 2/150 (1%)

Query: 88  DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR 147
           +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+P +F    P+T+R
Sbjct: 318 EFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSR 375

Query: 148 PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLN 207
             +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+LE+V +GR  +L+
Sbjct: 376 KPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILD 435

Query: 208 PAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
              Q+LKVLR+  F P V+FIA P    L+
Sbjct: 436 VNPQALKVLRTSEFMPYVVFIAAPELETLR 465

Homo sapiens (taxid: 9606)

>sp|Q6P0D7|MPP7_DANRE MAGUK p55 subfamily member 7 OS=Danio rerio GN=mpp7 PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 138/260 (53%), Gaps = 27/260 (10%)

Query: 1   MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPS 60
           +RAG+IPSK  QER++   R           P+             P++ +  T  S   
Sbjct: 283 LRAGLIPSKHFQERRLAVWR-----------PT-------------PVMTLQRT-SSKRF 317

Query: 61  KAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLR-RPVVLIGPS 119
                +        KT K +Y+  +++ +D  ++PTYEEV         R R VVL+GP+
Sbjct: 318 SGLRRSFRLSRRDKKTNKSMYECKKSEQYDTADVPTYEEVTTYRRKHGDRHRLVVLVGPT 377

Query: 120 GVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF 179
           GVG +ELKR+L+  D   F+   P+T+R K+  E +G EYHF+S     + I   K IE 
Sbjct: 378 GVGLNELKRKLLISDTQHFSVTIPHTSRSKRHQESEGVEYHFISKNLFEADIQNNKFIEH 437

Query: 180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239
           GEYKG+ YGTS DSV  +++  +V +L+    +LK LR+  FKP V+F+ PP    L+E+
Sbjct: 438 GEYKGNYYGTSFDSVRSVLSKNKVCLLDVQPHTLKHLRTAEFKPYVVFVKPPCIERLRET 497

Query: 240 RITAFARS-PFDQYNSRAFT 258
           R  A   S   D+ +S+AF+
Sbjct: 498 RRNAKVISGKDDKTSSKAFS 517

Acts as an important adapter that promotes epithelial cell polarity and tight junction formation. Involved in the assembly of protein complexes at sites of cell-cell contact.

Danio rerio (taxid: 7955)

>sp|Q9WV34|MPP2_MOUSE MAGUK p55 subfamily member 2 OS=Mus musculus GN=Mpp2 PE=1 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 75  KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
           K K+++Y   +  +FDR E+  YEEVA++ P    R+ +VLIG  GVGR  LK +LI  D
Sbjct: 317 KKKRMMYLTTKNAEFDRHELLIYEEVARMPPFR--RKTLVLIGAQGVGRRSLKNKLILWD 374

Query: 135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
           PD++    PYT+R  K  E +G+ Y FVS   M + I AG+ +E GEY+G+LYGT  DS+
Sbjct: 375 PDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADIRAGRYLEHGEYEGNLYGTRIDSI 434

Query: 195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             +V SG+V VL+   Q++KVLR+  F P V+FI  P +  L+
Sbjct: 435 RGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDYETLR 477

Mus musculus (taxid: 10090)

>sp|Q14168|MPP2_HUMAN MAGUK p55 subfamily member 2 OS=Homo sapiens GN=MPP2 PE=1 SV=3

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 75  KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
           K K+++Y   +  +FDR E+  YEEVA++ P    R+ +VLIG  GVGR  LK +LI  D
Sbjct: 341 KKKRMMYLTTKNAEFDRHELLIYEEVARMPPFR--RKTLVLIGAQGVGRRSLKNKLIMWD 398

Query: 135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
           PD++    PYT+R  K  E +G+ Y FVS   M + + AG+ +E GEY+G+LYGT  DS+
Sbjct: 399 PDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADVRAGRYLEHGEYEGNLYGTRIDSI 458

Query: 195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             +V +G+V VL+   Q++KVLR+  F P V+FI  P F  L+
Sbjct: 459 RGVVAAGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLR 501

Homo sapiens (taxid: 9606)

>sp|P70290|EM55_MOUSE 55 kDa erythrocyte membrane protein OS=Mus musculus GN=Mpp1 PE=1 SV=1

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 115/183 (62%), Gaps = 9/183 (4%)

Query: 50  KIADTVYSSPSKAKSPTGLSCS--AAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPME 107
           ++A   +S+PS+A S     CS     K  K  Y    +  FD+ ++ +YEEV +L   +
Sbjct: 227 RVASVAHSAPSEAPS-----CSPFGKKKKCKDKYLAKHSSIFDQLDVVSYEEVVRLPAFK 281

Query: 108 TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETM 167
             R+ +VLIG SGVGRS +K  L++ +P+KF    PYTTRP K  EEDGKEYHF+S E M
Sbjct: 282 --RKTLVLIGASGVGRSHIKNGLLSHNPEKFAYPAPYTTRPPKKSEEDGKEYHFISTEEM 339

Query: 168 TSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLF 227
           T  ISA + +EFG Y+G+++GT  ++V ++    ++A+L+   Q+LK +R+    P ++F
Sbjct: 340 TKNISANEFLEFGSYQGNMFGTKFETVHQIHKQDKIAILDIEPQTLKTVRTAELSPFIVF 399

Query: 228 IAP 230
           IAP
Sbjct: 400 IAP 402

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
242023194	580	conserved hypothetical protein [Pediculu	0.897	0.408	0.550	3e-71
270004298	501	hypothetical protein TcasGA2_TC003628 [T	0.882	0.465	0.534	3e-69
195426938	599	GK20656 [Drosophila willistoni] gi|19415	0.935	0.412	0.533	3e-67
332026659	602	MAGUK p55 subfamily member 7 [Acromyrmex	0.935	0.410	0.542	3e-67
195402473	595	GJ15026 [Drosophila virilis] gi|19414069	0.920	0.408	0.536	6e-66
195333309	593	GM20471 [Drosophila sechellia] gi|194125	0.920	0.409	0.521	1e-65
221330162	595	menage a trois, isoform A [Drosophila me	0.920	0.408	0.521	2e-65
221330166	585	menage a trois, isoform C [Drosophila me	0.920	0.415	0.521	2e-65
198461418	596	GA15582 [Drosophila pseudoobscura pseudo	0.924	0.409	0.529	2e-65
195171196	596	GL20641 [Drosophila persimilis] gi|19411	0.924	0.409	0.529	2e-65

>gi|242023194|ref|XP_002432021.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517372|gb|EEB19283.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/258 (55%), Positives = 179/258 (69%), Gaps = 21/258 (8%)

Query: 1   MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPS 60
           MRAG+IPS+ALQER+ILHER+  +     +  S+   G      C            SP 
Sbjct: 286 MRAGLIPSRALQERRILHERAQTDKTKDEALASISLPG------C-----------QSP- 327

Query: 61  KAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSG 120
             KSP   + ++  KTK I+YD AE DDFDREEIPTYEEVAKLYP   L RP++LIGP G
Sbjct: 328 --KSPR-CTLTSRSKTKTIMYDTAENDDFDREEIPTYEEVAKLYPRTGLNRPIILIGPPG 384

Query: 121 VGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180
           +GR+ELKRRLIA D +K+   TP+T+R  +PGE +G+EY+FV+ E M   I +GK IEFG
Sbjct: 385 IGRNELKRRLIATDTEKYKTPTPFTSRSVRPGEVNGREYNFVTREEMEKEIESGKFIEFG 444

Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
           EYKG+LYGTSS+SV  LVN+G V +LNP YQ+LK+LR+P  KP +++I PP F  LKESR
Sbjct: 445 EYKGNLYGTSSESVKSLVNAGYVCILNPHYQALKMLRTPQLKPFIIYIKPPSFEELKESR 504

Query: 241 ITAFARSPFDQYNSRAFT 258
            +A ARS FD+ NSR FT
Sbjct: 505 TSAHARSTFDESNSRGFT 522

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004298|gb|EFA00746.1| hypothetical protein TcasGA2_TC003628 [Tribolium castaneum]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 138/258 (53%), Positives = 170/258 (65%), Gaps = 25/258 (9%)

Query: 1   MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPS 60
           MRAG+IPS+ALQER+I+H+R+       ++ P L          C               
Sbjct: 211 MRAGLIPSRALQERRIIHDRTQAAKDGDDALPVL---------TC--------------- 246

Query: 61  KAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSG 120
            ++SP    C++  KTKKI+YD AE DDFDRE+I TYEEVAKLYP   + RP+VLIG  G
Sbjct: 247 -SQSPKSPRCASKPKTKKIMYDTAENDDFDREQIATYEEVAKLYPRPGIYRPIVLIGAPG 305

Query: 121 VGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180
           VGR+ELKRRLI  DPDK+   TP+T+R  KPGE +GKEY FV  E M   I A K IEFG
Sbjct: 306 VGRNELKRRLIDTDPDKYRTPTPFTSRQMKPGEVNGKEYFFVPREKMEEDIEASKFIEFG 365

Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
           EYKG+LYGTS+DSV  +VNSG V +LNP YQ+LK+LR+P  KP +++I PPP   LKE+R
Sbjct: 366 EYKGNLYGTSADSVKAIVNSGHVCILNPHYQALKMLRTPQLKPYIIYIKPPPLERLKETR 425

Query: 241 ITAFARSPFDQYNSRAFT 258
               ARS FD  NSR FT
Sbjct: 426 NAVHARSTFDVNNSRGFT 443

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426938|ref|XP_002061540.1| GK20656 [Drosophila willistoni] gi|194157625|gb|EDW72526.1| GK20656 [Drosophila willistoni]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/257 (53%), Positives = 174/257 (67%), Gaps = 10/257 (3%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+I+HER+  E G+ + +   G C     + C       +T   SP  
Sbjct: 295 RAGLIPSRALQERRIIHERTQREGGNADLDSKPGSCA----SLCT-----TNTPPGSPRL 345

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE I TYEEVAKLYP   + RP+VLIG  GV
Sbjct: 346 HTSSSSSSCRQP-KTKKIMYDLTENDDFDRELIATYEEVAKLYPRPGVYRPIVLIGAPGV 404

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DPDKF    PYTTRP + GE  G+EY FV+HE M + I AGK +E GE
Sbjct: 405 GRNELRRRLIARDPDKFRSPVPYTTRPMRTGEVAGREYIFVAHEKMEADIEAGKFVEHGE 464

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ I PP  + LK +R 
Sbjct: 465 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHIKPPELSVLKSTRT 524

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 525 EARAKSTFDEANARSFT 541

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026659|gb|EGI66768.1| MAGUK p55 subfamily member 7 [Acromyrmex echinatior]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/260 (54%), Positives = 180/260 (69%), Gaps = 13/260 (5%)

Query: 1   MRAGIIPSKALQERKIL-HERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSP 59
           MRAG+IPS+ALQER+IL   +   +      N SL      L A C    + + ++++SP
Sbjct: 296 MRAGLIPSRALQERRILLERKEKEKEKSEEDNISLCSVPVPLPALC---PRPSTSLHASP 352

Query: 60  SKAKSPTGLSCS-AAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGP 118
           +K        C+    KTKKI+YD AE DDFDREE+PTYEEVAKLYP   L RPVVLIGP
Sbjct: 353 TK--------CNLQGTKTKKIMYDAAENDDFDREEVPTYEEVAKLYPRPGLYRPVVLIGP 404

Query: 119 SGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE 178
            GVGR+ELKRRLIA D +K+    PYT+RP + GE +GKEYHF++ E M   I AGK IE
Sbjct: 405 PGVGRNELKRRLIATDTEKYKTPVPYTSRPPRLGEINGKEYHFMTREKMEEDIEAGKFIE 464

Query: 179 FGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKE 238
           +GEYKG+LYGTSS+SV  LVN+G V +L+P YQ+LK+LR+P  +P V+++ PP F  LK+
Sbjct: 465 YGEYKGNLYGTSSESVSSLVNAGYVCLLSPHYQALKMLRTPQLRPYVIYVKPPTFEVLKD 524

Query: 239 SRITAFARSPFDQYNSRAFT 258
           +R  A ARS FD+ NSR FT
Sbjct: 525 TRNEARARSTFDESNSRGFT 544

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402473|ref|XP_002059829.1| GJ15026 [Drosophila virilis] gi|194140695|gb|EDW57166.1| GJ15026 [Drosophila virilis]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 138/257 (53%), Positives = 171/257 (66%), Gaps = 14/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+ILHER+  E  D +S P  G C             +  T   SP  
Sbjct: 295 RAGLIPSRALQERRILHERTQRECNDMDSKP--GSCA-----------SLCTTPPGSPRL 341

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE I TYEEVAKLYP   + RPVVLIG  GV
Sbjct: 342 QTSSSSSSCRQP-KTKKIMYDLTENDDFDRELIATYEEVAKLYPRPGIYRPVVLIGAPGV 400

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ + M + I AGK +E GE
Sbjct: 401 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVPGREYIFVARDKMDADIEAGKFVEHGE 460

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ I PP  A LK +R 
Sbjct: 461 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHIKPPELAVLKATRT 520

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 521 EARAKSTFDEANARSFT 537

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333309|ref|XP_002033334.1| GM20471 [Drosophila sechellia] gi|194125304|gb|EDW47347.1| GM20471 [Drosophila sechellia]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 170/257 (66%), Gaps = 14/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+ILH+R+     D +S P  G C             +  T   SP  
Sbjct: 293 RAGLIPSRALQERRILHDRTQKNGTDLDSKP--GSCA-----------SLCTTPPGSPRL 339

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RP+VLIG  GV
Sbjct: 340 PASSSTSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGVFRPIVLIGAPGV 398

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct: 399 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 458

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ + PP    LK +R 
Sbjct: 459 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELEILKATRT 518

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 519 EARAKSTFDEANARSFT 535

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330162|ref|NP_610642.2| menage a trois, isoform A [Drosophila melanogaster] gi|220902174|gb|AAF58707.3| menage a trois, isoform A [Drosophila melanogaster]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 170/257 (66%), Gaps = 14/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+ILH+R+     D +S P  G C             +  T   SP  
Sbjct: 295 RAGLIPSRALQERRILHDRTQKNGTDLDSKP--GSCA-----------SLCTTPPGSPRL 341

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RP+VLIG  GV
Sbjct: 342 PASSSTSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGVFRPIVLIGAPGV 400

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct: 401 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 460

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ + PP    LK +R 
Sbjct: 461 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDILKATRT 520

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 521 EARAKSTFDEANARSFT 537

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330166|ref|NP_001137643.1| menage a trois, isoform C [Drosophila melanogaster] gi|220902176|gb|ACL83097.1| menage a trois, isoform C [Drosophila melanogaster]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 170/257 (66%), Gaps = 14/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+ILH+R+     D +S P  G C             +  T   SP  
Sbjct: 285 RAGLIPSRALQERRILHDRTQKNGTDLDSKP--GSCA-----------SLCTTPPGSPRL 331

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RP+VLIG  GV
Sbjct: 332 PASSSTSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGVFRPIVLIGAPGV 390

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct: 391 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 450

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ + PP    LK +R 
Sbjct: 451 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDILKATRT 510

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 511 EARAKSTFDEANARSFT 527

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461418|ref|XP_001362009.2| GA15582 [Drosophila pseudoobscura pseudoobscura] gi|198137340|gb|EAL26589.2| GA15582 [Drosophila pseudoobscura pseudoobscura]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 171/257 (66%), Gaps = 13/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+I+HER+  +  D +S P  G C    +           T   SP  
Sbjct: 295 RAGLIPSRALQERRIIHERTQRDGNDLDSKP--GSCASLCNT----------TPPGSPRL 342

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RPVVLIG  GV
Sbjct: 343 HTSSSSSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGIFRPVVLIGAPGV 401

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct: 402 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 461

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ I PP    LK +R 
Sbjct: 462 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHIKPPELDELKSTRT 521

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 522 EARAKSTFDEANARSFT 538

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195171196|ref|XP_002026393.1| GL20641 [Drosophila persimilis] gi|194111295|gb|EDW33338.1| GL20641 [Drosophila persimilis]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 171/257 (66%), Gaps = 13/257 (5%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
           RAG+IPS+ALQER+I+HER+  +  D +S P  G C    +           T   SP  
Sbjct: 295 RAGLIPSRALQERRIIHERTQRDGNDLDSKP--GSCASLCNT----------TPPGSPRL 342

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
             S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RPVVLIG  GV
Sbjct: 343 HTSSSSSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGIFRPVVLIGAPGV 401

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
           GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct: 402 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 461

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
           YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ I PP    LK +R 
Sbjct: 462 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHIKPPELDELKSTRT 521

Query: 242 TAFARSPFDQYNSRAFT 258
            A A+S FD+ N+R+FT
Sbjct: 522 EARAKSTFDEANARSFT 538

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
FB|FBgn0050021	595	metro "menage a trois" [Drosop	0.920	0.408	0.521	2.3e-62
UNIPROTKB|E1C3F8	675	MPP5 "Uncharacterized protein"	0.594	0.232	0.452	1.6e-38
UNIPROTKB|B8ZZG1	428	MPP6 "Uncharacterized protein"	0.609	0.376	0.478	3.5e-38
UNIPROTKB|Q9NZW5	540	MPP6 "MAGUK p55 subfamily memb	0.609	0.298	0.478	3.5e-38
UNIPROTKB|F1ST93	484	MPP6 "Uncharacterized protein"	0.609	0.332	0.478	3.5e-38
UNIPROTKB|F1MU05	551	MPP6 "Uncharacterized protein"	0.609	0.292	0.478	5e-38
MGI|MGI:1927340	553	Mpp6 "membrane protein, palmit	0.609	0.291	0.478	5.5e-38
UNIPROTKB|E2QY99	675	MPP5 "Uncharacterized protein"	0.594	0.232	0.452	7.3e-38
UNIPROTKB|Q8N3R9	675	MPP5 "MAGUK p55 subfamily memb	0.594	0.232	0.452	7.3e-38
UNIPROTKB|E1BIQ8	675	MPP5 "Uncharacterized protein"	0.594	0.232	0.452	9.6e-38

FB|FBgn0050021 metro "menage a trois" [Drosophila melanogaster (taxid:7227)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 134/257 (52%), Positives = 170/257 (66%)

Query:     2 RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
             RAG+IPS+ALQER+ILH+R+     D +S P  G C             +  T   SP  
Sbjct:   295 RAGLIPSRALQERRILHDRTQKNGTDLDSKP--GSCA-----------SLCTTPPGSPRL 341

Query:    62 AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
               S +  SC    KTKKI+YDL E DDFDRE+I TYEEVAKLYP   + RP+VLIG  GV
Sbjct:   342 PASSSTSSCRQP-KTKKIMYDLTENDDFDREQIATYEEVAKLYPRPGVFRPIVLIGAPGV 400

Query:   122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181
             GR+EL+RRLIA DP+KF    PYTTRP + GE  G+EY FV+ E M + I AGK +E GE
Sbjct:   401 GRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGE 460

Query:   182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241
             YKGHLYGTS++SV  +VN+G V VL+P YQ++K LR+   KP ++ + PP    LK +R 
Sbjct:   461 YKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDILKATRT 520

Query:   242 TAFARSPFDQYNSRAFT 258
              A A+S FD+ N+R+FT
Sbjct:   521 EARAKSTFDEANARSFT 537

GO:0005886 "plasma membrane" evidence=ISS

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0071212 "subsynaptic reticulum" evidence=IDA

UNIPROTKB|E1C3F8 MPP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 396 (144.5 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 71/157 (45%), Positives = 111/157 (70%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y+  + DD+D EEI TYEE++  +     +RP+VLIGP   G++EL++RL+  +
Sbjct:   444 KRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIVLIGPQNCGQNELRQRLMNNE 503

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
              D+F    P+TTR ++  E  G++YHF+S +   + I+AGK IE+GE++ +LYGTS DSV
Sbjct:   504 VDRFASAVPHTTRSRRETEVAGRDYHFISRQAFENDIAAGKFIEYGEFEKNLYGTSIDSV 563

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
              +++NSG++ +LN   QSLK LR+   KP ++F+APP
Sbjct:   564 RQVINSGKICLLNLHTQSLKTLRNSDLKPYIIFVAPP 600

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|B8ZZG1 MPP6 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 78/163 (47%), Positives = 105/163 (64%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct:   193 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 250

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
             P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct:   251 PTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 310

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct:   311 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLR 353

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9NZW5 MPP6 "MAGUK p55 subfamily member 6" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 78/163 (47%), Positives = 105/163 (64%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct:   305 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 362

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
             P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct:   363 PTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 422

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct:   423 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLR 465

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0006461 "protein complex assembly" evidence=NAS

UNIPROTKB|F1ST93 MPP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 381 (139.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 78/163 (47%), Positives = 105/163 (64%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct:   305 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 362

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
             P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct:   363 PTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 422

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct:   423 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLR 465

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MU05 MPP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
 Identities = 78/163 (47%), Positives = 105/163 (64%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct:   316 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 373

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
             P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct:   374 PTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 433

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct:   434 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELDTLR 476

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1927340 Mpp6 "membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 5.5e-38, Sum P(2) = 5.5e-38
 Identities = 78/163 (47%), Positives = 105/163 (64%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y      +FDR EI  YEEVAK+ P +  R+ +VLIG  GVGR  LK R I L+
Sbjct:   318 KKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ--RKTLVLIGAQGVGRRSLKNRFIVLN 375

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
             P +F    P+T+R  +  E+DG+ Y FVS   M + I AGK +E GEY+G+LYGT  DS+
Sbjct:   376 PARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSI 435

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237
             LE+V +GR  +L+   Q+LKVLR+  F P V+FIA P    L+
Sbjct:   436 LEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLR 478

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISS

UNIPROTKB|E2QY99 MPP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 71/157 (45%), Positives = 110/157 (70%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  +
Sbjct:   444 KRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKE 503

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
              D+F    P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV
Sbjct:   504 KDRFASAVPHTTRSRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSV 563

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
              +++NSG++ +L+   QSLK LR+   KP ++FIAPP
Sbjct:   564 RQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPP 600

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8N3R9 MPP5 "MAGUK p55 subfamily member 5" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 71/157 (45%), Positives = 110/157 (70%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  +
Sbjct:   444 KRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKE 503

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
              D+F    P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV
Sbjct:   504 KDRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSV 563

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
              +++NSG++ +L+   QSLK LR+   KP ++FIAPP
Sbjct:   564 RQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPP 600

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

UNIPROTKB|E1BIQ8 MPP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 390 (142.3 bits), Expect = 9.6e-38, Sum P(2) = 9.6e-38
 Identities = 71/157 (45%), Positives = 110/157 (70%)

Query:    75 KTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134
             K KK++Y+  + DD+D EEI TYEE++  +     +RP++LIGP   G++EL++RL+  +
Sbjct:   444 KRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKE 503

Query:   135 PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSV 194
              D+F    P+TTR ++  E  G++YHFVS +   + I+AGK IE GE++ +LYGTS DSV
Sbjct:   504 KDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSV 563

Query:   195 LELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
              +++NSG++ +L+   QSLK LR+   KP ++FIAPP
Sbjct:   564 RQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPP 600

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	5e-44
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	2e-37
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	4e-37
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	9e-31
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	3e-28
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	5e-26
PLN02772	398	PLN02772, PLN02772, guanylate kinase	5e-22
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	7e-18
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	9e-11

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score =  146 bits (371), Expect = 5e-44
 Identities = 56/122 (45%), Positives = 83/122 (68%)

Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
           RRP+VL GPSGVG+S +K+ L+   P+KF     +TTRP +PGE DGK+YHFVS E M +
Sbjct: 2   RRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMEN 61

Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            ISA + +E+ E+ G+ YGTS +++ ++  SG++ +L+   Q +K LR     P+ +FI 
Sbjct: 62  DISANEFLEYAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAELSPISVFIK 121

Query: 230 PP 231
           PP
Sbjct: 122 PP 123

Length = 183

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score =  129 bits (327), Expect = 2e-37
 Identities = 50/120 (41%), Positives = 73/120 (60%)

Query: 119 SGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE 178
           SGVG+  L   LI   PD F +V  +TTRP +PGE +G +YHFVS E     I +G  +E
Sbjct: 1   SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60

Query: 179 FGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKE 238
           +GEY+G+ YGTS +++ ++   G+  +L+   Q +K LR     P+V+FIAPP    L+ 
Sbjct: 61  WGEYEGNYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELER 120

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score =  127 bits (321), Expect = 4e-37
 Identities = 46/120 (38%), Positives = 68/120 (56%)

Query: 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
            +VL GPSGVG+S L +RL+      F     +TTR  +PGE DG +YHFVS E    LI
Sbjct: 1   LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60

Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
             G+ +E+ E+ G+ YGTS  +V E +  G++ +L    Q  + ++      + +FI PP
Sbjct: 61  ENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score =  112 bits (283), Expect = 9e-31
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
             +V+ GPSG G+S L + L+  DP+    ++  TTR  +PGE DG +Y FVS E    +
Sbjct: 1   LLIVISGPSGAGKSTLVKALLEEDPNLKFSIS-ATTRKPRPGEVDGVDYFFVSKEEFEEM 59

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
           I AG+ +E+ E  G+ YGT    V E + +G+  +L    Q  + ++      + +FI P
Sbjct: 60  IKAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILP 119

Query: 231 PPFAALKESRI 241
           P    L+  R+
Sbjct: 120 PSLEELER-RL 129

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
             +VL GPSGVG+S L + L+  D  +F+ V+  TTR  +PGE DG +Y FV+ E    L
Sbjct: 5   LLIVLSGPSGVGKSTLVKALLEDDKLRFS-VS-ATTRKPRPGEVDGVDYFFVTEEEFEEL 62

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVL-FIA 229
           I   + +E+ EY G+ YGTS + V + +  G+  +L+   Q    ++       V  FI 
Sbjct: 63  IERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKK-KMPNAVSIFIL 121

Query: 230 PPPFAALKE 238
           PP    L+ 
Sbjct: 122 PPSLEELER 130

Length = 191

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score =  100 bits (253), Expect = 5e-26
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           +VL GPSG G+S L + L+  DP+    V+  TTR  +PGE DG +Y FVS E    +I 
Sbjct: 8   IVLSGPSGAGKSTLVKALLERDPNLQLSVS-ATTRAPRPGEVDGVDYFFVSKEEFEEMIE 66

Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVL-FIAPP 231
            G+ +E+ E  G+ YGT    V E + +G+  +L   +Q  + ++       V  FI PP
Sbjct: 67  NGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKK-KMPDAVSIFILPP 125

Query: 232 PFAALKESRIT 242
               L+  R+ 
Sbjct: 126 SLEELER-RLR 135

Length = 205

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 93.7 bits (233), Expect = 5e-22
 Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 22/216 (10%)

Query: 49  VKIADTV---YSSP----SKAKSPTGLSCSAAVKTKKIIYDLAETDD----FDREEIPTY 97
           V+I D +   + SP    +  K   G S     K + ++       D    F   + P  
Sbjct: 53  VQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFV 112

Query: 98  EEVAKLYPME----------TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR 147
            E  KL   E             +P+V+ GPSGVG+  L   L+   P  F     +TTR
Sbjct: 113 REQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR 172

Query: 148 PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLN 207
             +  E+DG  YHF     M   I  GK +EF    G+LYGTS ++V  + +SG+  +L+
Sbjct: 173 APREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILD 232

Query: 208 PAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA 243
              Q  + +R+ + + + +FI PP    L E R+ A
Sbjct: 233 IDVQGARSVRASSLEAIFIFICPPSMEEL-EKRLRA 267

Length = 398

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score = 79.0 bits (195), Expect = 7e-18
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           VV+ GPSGVG+  +  R+       F  V   TTRPK+PGE DG +YHFV+ E    +IS
Sbjct: 16  VVISGPSGVGKDAVLARMRERKLP-FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMIS 74

Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
             +++E+ E  G+ YG     V + + SGR  ++    Q    ++    + + +F+APP 
Sbjct: 75  QNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPS 134

Query: 233 FAALK---ESRIT 242
              L    E R T
Sbjct: 135 MDELTRRLELRRT 147

Length = 206

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score = 59.2 bits (143), Expect = 9e-11
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 114 VLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISA 173
           ++   +G G+S + + L+   PD    ++  TTR  +PG+E+GK Y F++ E     I+ 
Sbjct: 8   IISSVAGGGKSTIIQALLEEHPDFLFSIS-CTTRAPRPGDEEGKTYFFLTIEEFKKGIAD 66

Query: 174 GKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLV-LFIAPP 231
           G+ +E+ E   + YGT    + +    GR A+++   Q  K+++    + +V +FI PP
Sbjct: 67  GEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPP 125

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG0609|consensus	542		100.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	100.0
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	100.0
PRK14737	186	gmk guanylate kinase; Provisional	100.0
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	100.0
PLN02772	398	guanylate kinase	100.0
PRK14738	206	gmk guanylate kinase; Provisional	99.97
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.96
KOG0707|consensus	231		99.95
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.93
PRK00300	205	gmk guanylate kinase; Provisional	99.92
KOG0708|consensus	359		99.8
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.75
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.75
COG3709	192	Uncharacterized component of phosphonate metabolis	99.66
PRK08356	195	hypothetical protein; Provisional	99.46
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.34
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.01
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.93
PRK00098	298	GTPase RsgA; Reviewed	98.8
PLN02840	421	tRNA dimethylallyltransferase	98.68
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.64
KOG3354|consensus	191		98.52
PRK06762	166	hypothetical protein; Provisional	98.5
PRK00698	205	tmk thymidylate kinase; Validated	98.46
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.4
PLN02165	334	adenylate isopentenyltransferase	98.37
PLN02748	468	tRNA dimethylallyltransferase	98.36
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.36
PHA02530	300	pseT polynucleotide kinase; Provisional	98.35
KOG3580|consensus	1027		98.35
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.35
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.29
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.27
PRK00889	175	adenylylsulfate kinase; Provisional	98.27
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.15
COG1162	301	Predicted GTPases [General function prediction onl	98.15
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.14
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.14
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.13
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.12
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.12
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.12
PRK03846	198	adenylylsulfate kinase; Provisional	98.11
PRK07261	171	topology modulation protein; Provisional	98.1
KOG1384|consensus	348		98.1
PRK09825	176	idnK D-gluconate kinase; Provisional	98.02
PRK06217	183	hypothetical protein; Validated	98.01
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.01
PRK08118	167	topology modulation protein; Reviewed	97.99
PRK08233	182	hypothetical protein; Provisional	97.98
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.96
PRK06696	223	uridine kinase; Validated	97.96
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.96
PRK13946	184	shikimate kinase; Provisional	97.96
PRK00131	175	aroK shikimate kinase; Reviewed	97.94
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.94
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.93
PRK13949	169	shikimate kinase; Provisional	97.93
PRK14530	215	adenylate kinase; Provisional	97.93
PRK04040	188	adenylate kinase; Provisional	97.89
PRK14532	188	adenylate kinase; Provisional	97.89
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.89
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.88
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.85
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.85
PRK13947	171	shikimate kinase; Provisional	97.85
PRK06547	172	hypothetical protein; Provisional	97.83
PRK05541	176	adenylylsulfate kinase; Provisional	97.83
PRK03839	180	putative kinase; Provisional	97.83
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.82
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.8
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.8
PRK13948	182	shikimate kinase; Provisional	97.79
PRK05057	172	aroK shikimate kinase I; Reviewed	97.79
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.78
PRK14527	191	adenylate kinase; Provisional	97.78
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.77
PLN02200	234	adenylate kinase family protein	97.77
PRK12288	347	GTPase RsgA; Reviewed	97.77
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.76
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.76
PRK06761	282	hypothetical protein; Provisional	97.74
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.74
COG4988	559	CydD ABC-type transport system involved in cytochr	97.73
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.73
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.72
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.7
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.69
KOG0058|consensus	716		97.69
PRK03731	171	aroL shikimate kinase II; Reviewed	97.69
PRK11545	163	gntK gluconate kinase 1; Provisional	97.69
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.68
PRK05480	209	uridine/cytidine kinase; Provisional	97.67
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.67
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.67
PLN02318	656	phosphoribulokinase/uridine kinase	97.65
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.64
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.64
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.64
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.63
PRK04182	180	cytidylate kinase; Provisional	97.62
PRK00625	173	shikimate kinase; Provisional	97.61
PRK14531	183	adenylate kinase; Provisional	97.6
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.6
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.59
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.59
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.59
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.58
PLN02924	220	thymidylate kinase	97.58
PRK01184	184	hypothetical protein; Provisional	97.58
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.56
COG4639	168	Predicted kinase [General function prediction only	97.55
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.55
PRK09087	226	hypothetical protein; Validated	97.55
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.54
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.54
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.53
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.51
KOG1191|consensus	531		97.51
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.5
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.5
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.49
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.45
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.45
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.44
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.43
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.42
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.4
PRK00279	215	adk adenylate kinase; Reviewed	97.38
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.35
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.34
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.34
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.32
PRK14529	223	adenylate kinase; Provisional	97.3
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.29
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.29
PRK12289	352	GTPase RsgA; Reviewed	97.29
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.27
COG0645	170	Predicted kinase [General function prediction only	97.27
PTZ00088	229	adenylate kinase 1; Provisional	97.25
PRK07667	193	uridine kinase; Provisional	97.25
PLN02348	395	phosphoribulokinase	97.25
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.25
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.25
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.24
KOG0055|consensus	1228		97.24
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.24
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.23
PRK13973	213	thymidylate kinase; Provisional	97.21
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.21
smart00382	148	AAA ATPases associated with a variety of cellular	97.21
PRK13974	212	thymidylate kinase; Provisional	97.21
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.21
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.2
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.2
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.19
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.19
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.19
KOG0057|consensus	591		97.19
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.18
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.18
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.17
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.17
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.17
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.16
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.16
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.16
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.16
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.16
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.15
PLN02674	244	adenylate kinase	97.15
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.15
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.15
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.15
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.14
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.14
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.14
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.14
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	97.14
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.14
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.13
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.13
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.13
PRK13808	333	adenylate kinase; Provisional	97.13
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.13
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.12
COG1160	444	Predicted GTPases [General function prediction onl	97.12
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.12
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.12
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.12
PLN02199	303	shikimate kinase	97.12
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.11
KOG0055|consensus	1228		97.11
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.11
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.1
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.09
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.09
PRK05439	311	pantothenate kinase; Provisional	97.09
PHA00729	226	NTP-binding motif containing protein	97.08
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.08
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.06
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.06
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.06
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.06
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.06
COG0486	454	ThdF Predicted GTPase [General function prediction	97.05
PLN03232	1495	ABC transporter C family member; Provisional	97.05
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.05
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.04
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.04
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.04
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.04
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.04
PRK14526	211	adenylate kinase; Provisional	97.04
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.04
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.03
PRK10908	222	cell division protein FtsE; Provisional	97.03
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.03
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.03
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.03
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.02
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.02
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.0
cd03246	173	ABCC_Protease_Secretion This family represents the	96.99
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.99
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.99
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.99
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.99
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.99
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.99
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.99
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.98
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.98
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.97
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	96.97
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.96
KOG0734|consensus	752		96.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.95
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.95
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.95
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.95
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.94
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.94
KOG0056|consensus	790		96.94
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.94
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.94
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.93
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.93
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.92
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.92
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.92
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.92
PRK06620	214	hypothetical protein; Validated	96.91
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.91
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.91
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.91
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.91
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.9
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.9
PTZ00243	1560	ABC transporter; Provisional	96.9
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.9
PLN03130	1622	ABC transporter C family member; Provisional	96.9
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.9
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.89
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.89
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.89
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.89
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.89
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.89
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.88
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.88
COG1160	444	Predicted GTPases [General function prediction onl	96.88
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.88
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.88
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.88
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.88
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.88
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.88
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.87
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.87
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.87
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.87
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.87
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.86
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.86
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.86
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	96.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.86
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.86
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	96.85
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.85
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.84
COG3911	183	Predicted ATPase [General function prediction only	96.84
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.84
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.84
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.84
COG4181	228	Predicted ABC-type transport system involved in ly	96.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.84
PF00004	132	AAA: ATPase family associated with various cellula	96.83
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.83
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.83
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.82
PRK12338	319	hypothetical protein; Provisional	96.82
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.82
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.82
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.82
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.82
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.82
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.81
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.81
PTZ00301	210	uridine kinase; Provisional	96.81
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.81
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.81
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	96.81
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	96.81
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.8
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.8
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.8
PRK15453	290	phosphoribulokinase; Provisional	96.8
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.8
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.8
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	96.8
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	96.79
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.79
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.79
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.78
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.78
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.77
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	96.77
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.77
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.76
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.76
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.76
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.76
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	96.76
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.76
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.76
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.75
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	96.75
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.75
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.75
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	96.75
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.75
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.75
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.75
KOG3079|consensus	195		96.74
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.74
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	96.74
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	96.74
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.74
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	96.74
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.73
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.73
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	96.73
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	96.73
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	96.73
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.73
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	96.72
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	96.72
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	96.72
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.72
PRK03695	248	vitamin B12-transporter ATPase; Provisional	96.72
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.72
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	96.72
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.72
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.72
PRK12298	390	obgE GTPase CgtA; Reviewed	96.71
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	96.71
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.71
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.71
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.71
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	96.71
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	96.71
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.71
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.71
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.7
COG0410	237	LivF ABC-type branched-chain amino acid transport	96.7
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	96.7
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.69
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.69
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.69
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	96.68
PRK00089	292	era GTPase Era; Reviewed	96.68
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.68
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	96.68
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.68
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.67
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.67
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.67
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.67
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.67
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.67
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	96.66
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.66
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.66
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	96.66
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.66
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.65
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	96.65
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.64
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	96.64
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	96.63
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	96.63
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	96.63
KOG1969|consensus	877		96.62
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	96.62
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.62
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	96.62
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	96.62
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	96.61
COG1159	298	Era GTPase [General function prediction only]	96.61
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.61
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.6
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.6
PRK13976	209	thymidylate kinase; Provisional	96.6
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.6
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	96.6
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	96.59
cd01896	233	DRG The developmentally regulated GTP-binding prot	96.59
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.59
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.59
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	96.59
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.59
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.58
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	96.57
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	96.57
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	96.57
PLN02459	261	probable adenylate kinase	96.57
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.57
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.57
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.56
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.56
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	96.56
COG0218	200	Predicted GTPase [General function prediction only	96.55
COG4987	573	CydC ABC-type transport system involved in cytochr	96.54
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	96.54
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.54
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	96.53
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	96.53
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.53
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.53
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.53
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.52
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	96.52
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.51
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.51
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	96.5
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.5
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.49
PRK13975	196	thymidylate kinase; Provisional	96.49
cd03299	235	ABC_ModC_like Archeal protein closely related to M	96.49
PRK10938	490	putative molybdenum transport ATP-binding protein	96.48
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	96.48
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	96.48
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	96.48
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	96.47
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.47
COG0411	250	LivG ABC-type branched-chain amino acid transport	96.47
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	96.46
CHL00181	287	cbbX CbbX; Provisional	96.46
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.45
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.45
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.44
COG4586	325	ABC-type uncharacterized transport system, ATPase	96.43
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.43
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.43
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.43
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.41
PRK03003	472	GTP-binding protein Der; Reviewed	96.41
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.4
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.39
COG4559	259	ABC-type hemin transport system, ATPase component	96.39
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	96.39
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.39
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	96.38
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	96.38
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.37
PRK04213	201	GTP-binding protein; Provisional	96.37
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	96.37
PF05729	166	NACHT: NACHT domain	96.36
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.36
PRK02496	184	adk adenylate kinase; Provisional	96.36
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.36

>KOG0609|consensus

Probab=100.00  E-value=6.5e-53  Score=402.73  Aligned_cols=218  Identities=46%  Similarity=0.713  Sum_probs=189.8

Q ss_pred             CcccccCChhhHHHHHHHhhhhcccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCcCCCCCCccccchhhhhhh
Q psy14166          1 MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKII   80 (264)
Q Consensus         1 ~~aGliPs~~~qe~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (264)
                      .+||||||+.|||||.++.+...+..+..                            ...+++++++|+       ++.+
T Consensus       268 ~~AGLiPS~~~qerr~a~~~~~~~~~~~~----------------------------~~c~~l~kkkk~-------~~~~  312 (542)
T KOG0609|consen  268 GLAGLIPSKELQERRVACLRREVSKEPEK----------------------------TRCQRLSKKKKK-------KKSK  312 (542)
T ss_pred             cccccccCHHHHHHHHHHHhhhcccCCcC----------------------------chhcccchhhhh-------hhhh
Confidence            37999999999999999988765422110                            111222222221       1344


Q ss_pred             hcccCCCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCccee
Q psy14166         81 YDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH  160 (264)
Q Consensus        81 ~~~~~~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~  160 (264)
                      |..++++.||..++++||||++|+++.  .|++||+||+|||.++|+++|+..+|++|+.+||||||+||++|.+|++||
T Consensus       313 y~~~~~~~~d~~~~~tYEEV~~~~~~~--rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~  390 (542)
T KOG0609|consen  313 YLGKHSAVFDQPELLTYEEVVRYPPFR--RRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYH  390 (542)
T ss_pred             hhhhcchhhhccccccHHHHhhhcccc--cceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccce
Confidence            888899999999999999999999964  499999999999999999999999999999999999999999999999999


Q ss_pred             ecCHHHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       161 fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      |||+++|+++|.+|+|+|||+|.+|+|||+.++|+.++++||+||||+.|++++.||+++|+||||||+||+++.++++|
T Consensus       391 FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r  470 (542)
T KOG0609|consen  391 FVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALR  470 (542)
T ss_pred             eeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCcccccCccccc
Q psy14166        241 ITAFARSPFDQYNSRAFTL  259 (264)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~  259 (264)
                      +.+....    ..++.|+|
T Consensus       471 ~~~~~~~----~~~~~~~d  485 (542)
T KOG0609|consen  471 KVAVMST----IVAKQFTD  485 (542)
T ss_pred             hhccccc----cccccCCH
Confidence            9987544    23455553

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=6.3e-37  Score=261.92  Aligned_cols=134  Identities=33%  Similarity=0.569  Sum_probs=126.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .|.++||+||||||||||.++|.+.+  .+.++|++|||+||+||++|++|||+|.++|++++.+++||||.+|.||+||
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            46899999999999999999999987  5889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA  245 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~  245 (264)
                      |+...|++++++|+.||||++.||++++|........|||.|||+++|+++ ...++
T Consensus        81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~R-L~~Rg  136 (191)
T COG0194          81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERR-LKGRG  136 (191)
T ss_pred             CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHH-HHccC
Confidence            999999999999999999999999999999888899999999999999874 44444

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=100.00  E-value=9.2e-37  Score=260.86  Aligned_cols=132  Identities=46%  Similarity=0.852  Sum_probs=124.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      +|+|||+|||||||+||+++|++.+|+.|+.+++||||+|+++|.+|++|||||+++|++++.+|+|+||++|.|++|||
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      +.++|..++++|++|||++++++++.|+...++|++|||.|||.+.|+++.+
T Consensus        82 ~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~  133 (183)
T PF00625_consen   82 SKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLR  133 (183)
T ss_dssp             EHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHH
T ss_pred             ccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999987643

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=100.00  E-value=3.5e-36  Score=259.54  Aligned_cols=133  Identities=27%  Similarity=0.504  Sum_probs=124.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      ++++|||+|||||||+||++.|++.+|+ +..+++||||+||+||.+|+||||||+++|+.++.+|.|+||++|.||+||
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            4689999999999999999999999886 567899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCc-EEEEEeCCChHHHHHHHHh
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKP-LVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p-~vIfI~pps~e~l~~~r~~  242 (264)
                      |+.++|++++++|++||+|+++++++.|+.....+ ++|||.|||.+.+++++..
T Consensus        82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~  136 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH  136 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh
Confidence            99999999999999999999999999999875555 8999999999999876544

>smart00072 GuKc Guanylate kinase homologues

Probab=100.00  E-value=3e-34  Score=245.89  Aligned_cols=132  Identities=43%  Similarity=0.770  Sum_probs=127.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      +++|||+|||||||+||++.|++.+|+.|..+++||||+++++|.+|.+|+|+|+++|+.++.+|.|+|++++.||+|||
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            48999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      +.++|.+++++|++||||++++++..|+...+.|++|||.|||.++|+++..
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~  133 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR  133 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988654

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02772 guanylate kinase

Probab=100.00  E-value=4.7e-34  Score=269.39  Aligned_cols=150  Identities=31%  Similarity=0.536  Sum_probs=138.8

Q ss_pred             cchHhhhhcCC-CCC-CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166         95 PTYEEVAKLYP-MET-LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS  172 (264)
Q Consensus        95 ~~Yeev~~~~~-~~~-~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~  172 (264)
                      +.=|||+++++ .+. ..+++||+|||||||+||+++|++.+|..|+++++||||+||++|.+|++|+|+++++|+.++.
T Consensus       118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~  197 (398)
T PLN02772        118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK  197 (398)
T ss_pred             cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHH
Confidence            34689999886 333 6789999999999999999999999988899999999999999999999999999999999999


Q ss_pred             cCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166        173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA  245 (264)
Q Consensus       173 ~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~  245 (264)
                      +|.|+||+++.||+|||+.++|+.++++|++|||++++++++.|+...+.+++|||.|||+++|+++ ...+.
T Consensus       198 ~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~R-L~~RG  269 (398)
T PLN02772        198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKR-LRARG  269 (398)
T ss_pred             hCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHH-HHhcC
Confidence            9999999999999999999999999999999999999999999999888999999999999999874 43443

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.97  E-value=9.2e-30  Score=222.30  Aligned_cols=134  Identities=32%  Similarity=0.547  Sum_probs=124.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166        107 ETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL  186 (264)
Q Consensus       107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~  186 (264)
                      |..+++|||+||||||||||++.|.+..+ .|..+++||||+++.+|.+|.+|||+|.++|+.++.++.|+||+++.||+
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            33668999999999999999999987765 58899999999999999999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      |||+.++|..++++|++||++++++++..|+.....+.+||+.||+.++|+++..
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~  143 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLE  143 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHH
Confidence            9999999999999999999999999999999877777999999999988877543

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.96  E-value=1.1e-28  Score=202.82  Aligned_cols=120  Identities=38%  Similarity=0.672  Sum_probs=117.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      +|+|+||||||||||++.|++.++..|..+++||||+|+.+|.+|.+|+|++.++|.+++.++.|++++++.+|+||++.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            58999999999999999999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCC
Q psy14166        192 DSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP  231 (264)
Q Consensus       192 ~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pp  231 (264)
                      +++.+++++|++||+++++++++.|+..+++|++|||.||
T Consensus        81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence            9999999999999999999999999999999999999999

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0707|consensus

Probab=99.95  E-value=8.7e-28  Score=211.31  Aligned_cols=134  Identities=37%  Similarity=0.603  Sum_probs=128.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      ..+++||.||+|+||+||+++|.+.+|..|+..|+||||.||.+|++|.+|||++.++|+.|+.++.|+|++.+.||+||
T Consensus        36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG  115 (231)
T KOG0707|consen   36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG  115 (231)
T ss_pred             CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence            44899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~  242 (264)
                      +++++++++...|++|++|++.++.+.++...+++.+||+.||+...++++.+.
T Consensus       116 tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~  169 (231)
T KOG0707|consen  116 TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRA  169 (231)
T ss_pred             chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhc
Confidence            999999999999999999999999999999999999999999999888875443

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.93  E-value=1.3e-24  Score=183.99  Aligned_cols=130  Identities=34%  Similarity=0.602  Sum_probs=121.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      +++|+|+||||||||||++.|+..++. +...+++|||+|+.++.+|.+|+|++.++|..++.++.|++++.+.+++||+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   79 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT   79 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence            479999999999999999999998876 5678899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      +.+.+.+++++|++||+|++++++..++...+.++.||+.+|+.+.++++.
T Consensus        80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl  130 (180)
T TIGR03263        80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRL  130 (180)
T ss_pred             cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH
Confidence            999999999999999999999999999988888999999999988887643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.92  E-value=2.7e-24  Score=185.78  Aligned_cols=132  Identities=33%  Similarity=0.577  Sum_probs=123.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++|+|+||||||||||++.|++.++ .|...+++|||+|+.||.+|.+|+|++.++|..++.++.|++++++.++.||
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            468999999999999999999999987 6788899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      ++...|..++++|++||+|+++++...++.....+++||+.+|+.+.++++..
T Consensus        83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~  135 (205)
T PRK00300         83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLR  135 (205)
T ss_pred             CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH
Confidence            99999999999999999999999999999877789999999999988877433

>KOG0708|consensus

Probab=99.80  E-value=2.3e-19  Score=166.74  Aligned_cols=136  Identities=29%  Similarity=0.433  Sum_probs=124.2

Q ss_pred             CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH
Q psy14166         86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE  165 (264)
Q Consensus        86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~  165 (264)
                      +...+...+++||-|.++...  ..|+|+|+||.   |.-|...|+..+|++|+.+++||+|+.              ++
T Consensus       165 ~~~~~e~~~lsY~~V~~~~~~--~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~  225 (359)
T KOG0708|consen  165 NELGKELSLLSYELVERLDSN--YLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------RE  225 (359)
T ss_pred             cccccccccccchhhhhhhcc--ccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HH
Confidence            334445567899999998876  44999999998   556999999999999999999999984              68


Q ss_pred             HHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        166 TMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       166 ~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      +|+++++++.||+++++++++|||+..+|+++.++|++||||++..+++.|+...+.|++|||.|-|.+.+++++
T Consensus       226 eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~  300 (359)
T KOG0708|consen  226 EMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN  300 (359)
T ss_pred             HhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.75  E-value=1.9e-17  Score=140.20  Aligned_cols=125  Identities=23%  Similarity=0.268  Sum_probs=104.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC--CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD--KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~--~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      +++++|+||||||||||++.|+...+.  .+.+..++|||++.   .+|.+|+|++.++|..++.++.|.++.++.+++|
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSY   77 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence            368999999999999999999887543  24456789999864   4689999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      |++. .+...+++|..+|++++.+....++.......+|||.+| .+.+.++
T Consensus        78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R  127 (179)
T TIGR02322        78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQR  127 (179)
T ss_pred             cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHH
Confidence            9997 588888999999999998887777764446689999975 5666553

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.75  E-value=1.1e-17  Score=143.42  Aligned_cols=126  Identities=17%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      +.+++|+||||||||||++.|+...+..|......+||+++.   .+.+|++++.++|.+++.++.|.+++.+.||+|||
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            468999999999999999999987654455566778887654   35788999999999999999999899999999999


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCC-CcEEEEEeCCChHHHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF-KPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~-~p~vIfI~pps~e~l~~~r  240 (264)
                      +. .++..++.|+.+|+++.......++...- ...+|||.+| .+.+.++.
T Consensus        79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL  128 (186)
T PRK10078         79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRL  128 (186)
T ss_pred             cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHH
Confidence            98 59999999999999988877666665432 3457788765 66666543

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.66  E-value=1e-15  Score=128.83  Aligned_cols=136  Identities=22%  Similarity=0.306  Sum_probs=116.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC--ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK--FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      +++|+++||||+||+||+..+....+..  +.+.-.++||+...|   |.++.-+|.++|..+..+|.|.-+|+..|..|
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y   81 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLSY   81 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence            5899999999999999999888776554  788888999997654   57788999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhccCCCccc
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQ  251 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~~~~~~~  251 (264)
                      |++. .|...++.|.++|++++...+..+|..+..-.+|-|.++ +++|.+ |...+++++.++
T Consensus        82 gip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaq-RL~~RGREs~ee  142 (192)
T COG3709          82 GIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQ-RLAERGRESREE  142 (192)
T ss_pred             cCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHH-HHHHhccCCHHH
Confidence            9996 588999999999999999999999988777778888775 778876 566666665443

>PRK08356 hypothetical protein; Provisional

Probab=99.46  E-value=1.3e-13  Score=119.00  Aligned_cols=120  Identities=13%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      .+|+|+||+||||||+++.|.. +  .|. .++++++.++..+.++.+|+|++...|..++..+.|++++.+.++.||++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-K--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-C--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            5789999999999999999953 3  354 78899998888889999999999999999888999999999999999987


Q ss_pred             H---HHHHHHHHcCCeEEEEcCH--HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        191 S---DSVLELVNSGRVAVLNPAY--QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       191 ~---~si~~vl~~Gki~vld~~~--~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .   ..+..+ ..+..+++|+=.  .-++.|+.  ....+|||.+|. +.+.+
T Consensus        82 ~~~~~~~~~~-~~~~~ividG~r~~~q~~~l~~--~~~~vi~l~~~~-~~~~~  130 (195)
T PRK08356         82 ILIRLAVDKK-RNCKNIAIDGVRSRGEVEAIKR--MGGKVIYVEAKP-EIRFE  130 (195)
T ss_pred             HHHHHHHHHh-ccCCeEEEcCcCCHHHHHHHHh--cCCEEEEEECCH-HHHHH
Confidence            4   222222 333345556431  22233333  235899999985 44443

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.34  E-value=1.9e-12  Score=120.04  Aligned_cols=114  Identities=17%  Similarity=0.235  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~  181 (264)
                      +++|+|+||+|||||+|+..|++..+..        +...+++||++|+.+|.+|++|||++...+.+.+..+.|+++. 
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a-   82 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA-   82 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-
Confidence            4799999999999999999999886531        3345688999999999999999999999998888888888765 


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCHHH-HHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQS-LKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~~~-~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                               ...|.++++.|+++||++--.. ++.|-. ++     +..||+.+.+++.
T Consensus        83 ---------~~~i~~i~~~gk~pIlvGGt~~Y~~al~~-g~-----~~~p~~~~~~r~~  126 (307)
T PRK00091         83 ---------LAAIADILARGKLPILVGGTGLYIKALLE-GL-----SPLPPADPELRAE  126 (307)
T ss_pred             ---------HHHHHHHHhCCCCEEEECcHHHHHHHhcc-CC-----CCCCCCCHHHHHH
Confidence                     6788899999999999876554 444422 22     2467777777654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.01  E-value=5.1e-10  Score=94.88  Aligned_cols=115  Identities=17%  Similarity=0.110  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCccee-ecCHHHHHH---HH-HcCCcceee-eec
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH-FVSHETMTS---LI-SAGKMIEFG-EYK  183 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~-fvs~~~f~~---~i-~~~~flE~~-~~~  183 (264)
                      +++|+|+|+|||||||+++.|....+..|.              .-++|++ +.....+..   .+ .++.+.++. ...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~--------------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWL--------------HFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEF   67 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCcc--------------ccCccHHHHhcChhhcccccccccCccCCcccchHH
Confidence            579999999999999999999988653221              0123322 221111110   00 011111111 134


Q ss_pred             CceecCCHHHHHHHHHcCCeEEEEcCHH----HHHHHhc-CCCCcEEEEEeCCChHHHHHH
Q psy14166        184 GHLYGTSSDSVLELVNSGRVAVLNPAYQ----SLKVLRS-PAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       184 g~~YGt~~~si~~vl~~Gki~vld~~~~----~~~~Lr~-~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ++.|++..+.+...+++|..||+|....    ..+.++. .....++||+.+| .+++.++
T Consensus        68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R  127 (175)
T cd00227          68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGR  127 (175)
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHH
Confidence            4789999999999999999999997543    2222222 2335678999998 4666553

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.93  E-value=7.1e-10  Score=101.97  Aligned_cols=97  Identities=18%  Similarity=0.246  Sum_probs=74.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeec
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYK  183 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~  183 (264)
                      +|+|+||+|||||+|+..|++.++..        +-...+.+|++|..+|.+|++|||++.-++.....          .
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~----------v   70 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS----------A   70 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEc----------H
Confidence            48999999999999999999886531        12235789999999999999999998544432111          2


Q ss_pred             CceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHhc
Q psy14166        184 GHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLRS  218 (264)
Q Consensus       184 g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr~  218 (264)
                      +++|+...+.|.++.+.|+++||.+-- -.++.|-.
T Consensus        71 ~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~  106 (287)
T TIGR00174        71 ADFQTLALNAIADITARGKIPLLVGGTGLYLKALLE  106 (287)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHc
Confidence            567888899999999999998887653 45666654

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.80  E-value=4.3e-09  Score=97.08  Aligned_cols=94  Identities=19%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCC------------CcceeecCHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEED------------GKEYHFVSHETMTS  169 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~------------G~dY~fvs~~~f~~  169 (264)
                      .+++++|+|+||||||||+|.|........ ..|+       ||||..+..+.+            +.+|++++.+++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  241 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH  241 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence            358999999999999999999998754332 2333       799876654444            45667788877776


Q ss_pred             HHHc-CCcceeeeecC-ceecCCHHHHHHHHHcCCe
Q psy14166        170 LISA-GKMIEFGEYKG-HLYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       170 ~i~~-~~flE~~~~~g-~~YGt~~~si~~vl~~Gki  203 (264)
                      .+.. ..+.+.-.|.+ .+|+++.++|++++++|++
T Consensus       242 ~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i  277 (298)
T PRK00098        242 YFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI  277 (298)
T ss_pred             HHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence            5433 34444444454 5899999999999999985

>PLN02840 tRNA dimethylallyltransferase

Probab=98.68  E-value=8.4e-09  Score=99.22  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG  180 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~  180 (264)
                      .+.+|+|+||+|||||||+..|++.....        +...+..+|++|...|.+++.||+++--...+....+.     
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~-----   94 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGA-----   94 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHH-----
Confidence            34689999999999999999999986531        11235568999999999999999998665543333333     


Q ss_pred             eecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHhc
Q psy14166        181 EYKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLRS  218 (264)
Q Consensus       181 ~~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr~  218 (264)
                           ++..-...|.++.+.|+++||.+- .-.++.|-.
T Consensus        95 -----F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~  128 (421)
T PLN02840         95 -----FFDDARRATQDILNRGRVPIVAGGTGLYLRWYIY  128 (421)
T ss_pred             -----HHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhc
Confidence                 344457888999999999887765 345666643

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.64  E-value=4.9e-08  Score=78.90  Aligned_cols=103  Identities=18%  Similarity=0.336  Sum_probs=63.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcce---eeeecCceec
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE---FGEYKGHLYG  188 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE---~~~~~g~~YG  188 (264)
                      +|+|+||+||||||+++.|++..+                       +.+++.+.+...+.....-.   +.+.....+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQ   57 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHH
Confidence            589999999999999999997643                       23455555554443322111   1111122333


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .-.+.++..++.|..+|+|...   .    ....++..+....+|++.+| .+.+.+
T Consensus        58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~  113 (143)
T PF13671_consen   58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRE  113 (143)
T ss_dssp             HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHH
T ss_pred             HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHH
Confidence            4446778888999999998543   1    23444456777889999886 455554

...

>KOG3354|consensus

Probab=98.52  E-value=8.3e-07  Score=74.87  Aligned_cols=109  Identities=19%  Similarity=0.250  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      -.|+++|+||+||||+.+.|.....-.               .++|.|||  +.+..++|- +|--+.....-+++-...
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~---------------F~dgDd~H--p~~NveKM~-~GipLnD~DR~pWL~~i~   74 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLK---------------FIDGDDLH--PPANVEKMT-QGIPLNDDDRWPWLKKIA   74 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCc---------------ccccccCC--CHHHHHHHh-cCCCCCcccccHHHHHHH
Confidence            389999999999999999999886422               36889998  666666663 454444333333333322


Q ss_pred             HHHHHHHHHcCCeEEEEcCH---HHHHHHhc----------CCCCcEEEEEeCCChHHHHHH
Q psy14166        191 SDSVLELVNSGRVAVLNPAY---QSLKVLRS----------PAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~---~~~~~Lr~----------~~~~p~vIfI~pps~e~l~~~  239 (264)
                       ...+..+++|+-+||-++.   +....||.          .+....+||+.. |.|++..+
T Consensus        75 -~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~R  134 (191)
T KOG3354|consen   75 -VELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKR  134 (191)
T ss_pred             -HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHH
Confidence             3445556689999999885   34555654          223456889988 88888764

>PRK06762 hypothetical protein; Provisional

Probab=98.50  E-value=1.1e-06  Score=73.42  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCc-eecC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH-LYGT  189 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~-~YGt  189 (264)
                      ++|+|+|++||||||+++.|.+..+.                     .+.+++.+.+...+... +   . ..+. .+..
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~---------------------~~~~i~~D~~r~~l~~~-~---~-~~~~~~~~~   56 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGR---------------------GTLLVSQDVVRRDMLRV-K---D-GPGNLSIDL   56 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEecHHHHHHHhccc-c---C-CCCCcCHHH
Confidence            68999999999999999999987532                     12233444444432111 0   0 0010 1111


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHH------HHHHHhcC-CCCcEEEEEeCCChHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQ------SLKVLRSP-AFKPLVLFIAPPPFAALK  237 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~------~~~~Lr~~-~~~p~vIfI~pps~e~l~  237 (264)
                      ..+.++..++.|.++|+|....      .++.+... +....+||+++|-...++
T Consensus        57 ~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~  111 (166)
T PRK06762         57 IEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLR  111 (166)
T ss_pred             HHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHH
Confidence            1234445577899999987631      24445433 334578999998443333

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.46  E-value=4e-07  Score=78.03  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=53.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHc--CCcceeee---ecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISA--GKMIEFGE---YKG  184 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~--~~flE~~~---~~g  184 (264)
                      +++|+|.|++||||||+++.|.+.... .+ ...++++.|.. +..        .+.+...+..  ..+..+..   +..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPGG-TPL--------GEKLRELLLDPNEEMDDKTELLLFYA   71 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCCC-ChH--------HHHHHHHHhccccCCCHHHHHHHHHH
Confidence            589999999999999999999986532 11 22345666652 221        1344444431  22222221   123


Q ss_pred             ceecCCHHHHHHHHHcCCeEEEE
Q psy14166        185 HLYGTSSDSVLELVNSGRVAVLN  207 (264)
Q Consensus       185 ~~YGt~~~si~~vl~~Gki~vld  207 (264)
                      +.|+...+.+...+++|.++|+|
T Consensus        72 ~r~~~~~~~i~~~l~~g~~vi~D   94 (205)
T PRK00698         72 ARAQHLEEVIKPALARGKWVISD   94 (205)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEC
Confidence            44666666677777889999998

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.40  E-value=1.9e-06  Score=71.72  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=55.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCHH
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSD  192 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~  192 (264)
                      |+|+||+||||||+++.|.......+               +++.++.  .......+.....+.+.  .....+..-.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~---------------v~~D~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   61 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKF---------------IEGDDLH--PAANIEKMSAGIPLNDD--DRWPWLQNLND   61 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeE---------------EeCcccc--ChHHHHHHHcCCCCChh--hHHHHHHHHHH
Confidence            57999999999999999998753111               1112211  00001111111111000  00011222234


Q ss_pred             HHHHHHHcCCeEEEEcCH---HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        193 SVLELVNSGRVAVLNPAY---QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       193 si~~vl~~Gki~vld~~~---~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .+...+..|..+|++...   .....++..+....+||+.+| .+++.+
T Consensus        62 ~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~  109 (163)
T TIGR01313        62 ASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILE  109 (163)
T ss_pred             HHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHH
Confidence            455566778777777663   445566655556678999887 445543

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PLN02165 adenylate isopentenyltransferase

Probab=98.37  E-value=7.5e-07  Score=83.54  Aligned_cols=99  Identities=19%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCc--------cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKF--------TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG  180 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f--------~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~  180 (264)
                      .+++|+|+||+|||||+|+..|+...+..+        -.....+|.+|...|..|+.||.++.-...          .+
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~----------~~  111 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPD----------DG  111 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccc----------cc
Confidence            568999999999999999999998854210        011234567776667788888766521111          11


Q ss_pred             eec-CceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166        181 EYK-GHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR  217 (264)
Q Consensus       181 ~~~-g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr  217 (264)
                      .|. +.+...-...+.++.+.|+++|+.+-- -.++.|-
T Consensus       112 ~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl  150 (334)
T PLN02165        112 ELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALL  150 (334)
T ss_pred             eeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHH
Confidence            111 112222345677888899998887664 3444443

>PLN02748 tRNA dimethylallyltransferase

Probab=98.36  E-value=1.8e-07  Score=91.42  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG  180 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~  180 (264)
                      .+++|+|+||+|||||+|+..|+..++..        +-.-++..|.+|...|..|+.||+++--........+.|.   
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~---   97 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR---   97 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH---
Confidence            56799999999999999999999886421        1112345788888889999999998754443322333332   


Q ss_pred             eecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166        181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR  217 (264)
Q Consensus       181 ~~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr  217 (264)
                             ..-...|.++.+.|+++||.+-- -.++.|-
T Consensus        98 -------~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl  128 (468)
T PLN02748         98 -------DHAVPLIEEILSRNGLPVIVGGTNYYIQALV  128 (468)
T ss_pred             -------HHHHHHHHHHHhcCCCeEEEcChHHHHHHHH
Confidence                   22356788889999998887664 3455554

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.36  E-value=1.8e-07  Score=86.67  Aligned_cols=95  Identities=14%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-----------cccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcce
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-----------PYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE  178 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-----------~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE  178 (264)
                      +++|+|+||+|||||.|+-.|++.+.    .+|           +..|.+|...|..++.||+++--...+....+.|.+
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~~----eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~   79 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGKA----EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK   79 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC----cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence            46999999999999999999998842    343           357888888889999999997655443333333432


Q ss_pred             eeeecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHhc
Q psy14166        179 FGEYKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLRS  218 (264)
Q Consensus       179 ~~~~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr~  218 (264)
                                .-.+.|+++.+.|+++||.+- .-.++.|-.
T Consensus        80 ----------~a~~~i~~i~~~gk~PilvGGTglYi~all~  110 (300)
T PRK14729         80 ----------EALKIIKELRQQKKIPIFVGGSAFYFKHLKY  110 (300)
T ss_pred             ----------HHHHHHHHHHHCCCCEEEEeCchHHHHHHHc
Confidence                      235678888899999877755 456666643

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.35  E-value=1.7e-06  Score=78.82  Aligned_cols=105  Identities=13%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee---cC-ce
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY---KG-HL  186 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~---~g-~~  186 (264)
                      ++|+|+|++||||||+++.|++.++.                      +.+++.+.+..++....-.....|   .+ ..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~----------------------~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~   60 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPK----------------------AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLV   60 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCC----------------------CEEEeccHHHHHhcCCCcccccccChHHHHHH
Confidence            68999999999999999999987631                      223344444433321100000000   00 01


Q ss_pred             ecCCHHHHHHHHHcCCeEEEEcCH---HHHH----HHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        187 YGTSSDSVLELVNSGRVAVLNPAY---QSLK----VLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       187 YGt~~~si~~vl~~Gki~vld~~~---~~~~----~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      +....+.+.+.++.|..+|+|..+   ...+    .++..+....+||+.+| .+++.+
T Consensus        61 ~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~~~  118 (300)
T PHA02530         61 TKAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEELVK  118 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHH
Confidence            122234456677889999998664   2222    23445566778999885 666655

>KOG3580|consensus

Probab=98.35  E-value=1.8e-06  Score=85.17  Aligned_cols=117  Identities=22%  Similarity=0.372  Sum_probs=88.0

Q ss_pred             CCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHH
Q psy14166         90 DREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS  169 (264)
Q Consensus        90 ~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~  169 (264)
                      -....+.||.|++....  ..|+|+|+||-+   .--..+|+...|+.|..+-.   - |+.   +|-+-          
T Consensus       613 vqtkfPaYERVvLREAg--FkRPVvifGPiA---DiAmeKLa~E~PD~fqiAkt---e-prd---ag~~~----------  670 (1027)
T KOG3580|consen  613 VQTKFPAYERVVLREAG--FKRPVVIFGPIA---DIAMEKLANELPDWFQIAKT---E-PRD---AGSEK----------  670 (1027)
T ss_pred             ecccCCchhhhhhhhhc--ccCceEEeccHH---HHHHHHHhhhCcchhhhhcc---c-ccc---CCccc----------
Confidence            34567899999987764  348999999986   45557898899998764421   1 111   11110          


Q ss_pred             HHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166        170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA  243 (264)
Q Consensus       170 ~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~  243 (264)
                         .-.+            +.+++|+.++++.|+++||+.|.++..|......|+|||+.|.|..-++.||+..
T Consensus       671 ---stg~------------irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL  729 (1027)
T KOG3580|consen  671 ---STGV------------IRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRL  729 (1027)
T ss_pred             ---ccce------------EEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHh
Confidence               0011            1246899999999999999999999999999999999999999999999998774

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.35  E-value=2.5e-06  Score=71.37  Aligned_cols=103  Identities=21%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             EcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCHHHHH
Q psy14166        116 IGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVL  195 (264)
Q Consensus       116 iGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~  195 (264)
                      ||.|||||||+...|+....-.|               ++|.+.|  .++.+++| .+|.-|.-....+++-. -.+.+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~f---------------idGDdlH--p~aNi~KM-~~GiPL~DdDR~pWL~~-l~~~~~   61 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKF---------------IDGDDLH--PPANIEKM-SAGIPLNDDDRWPWLEA-LGDAAA   61 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCce---------------ecccccC--CHHHHHHH-hCCCCCCcchhhHHHHH-HHHHHH
Confidence            69999999999999998865333               5788887  67788777 46666554443343222 224455


Q ss_pred             HHHHcCCeEEEEcCH---HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        196 ELVNSGRVAVLNPAY---QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       196 ~vl~~Gki~vld~~~---~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      +..+.|+.+|+.++.   .....||.......+||++.+ .+.+.+
T Consensus        62 ~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~  106 (161)
T COG3265          62 SLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLILE  106 (161)
T ss_pred             HhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHHHH
Confidence            556678877888875   577889988878889999986 544443

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.29  E-value=2e-06  Score=76.87  Aligned_cols=104  Identities=11%  Similarity=0.255  Sum_probs=59.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      +|+|+|++||||||+++.|......                  .|.+++.++.+.+...+..  +-+  .+.........
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~------------------~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~   58 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSE------------------KNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTL   58 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHH
Confidence            5899999999999999999976421                  1233344444333322100  000  00011112223


Q ss_pred             HHHHHHHHcCCeEEEEcCHH-------HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        192 DSVLELVNSGRVAVLNPAYQ-------SLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       192 ~si~~vl~~Gki~vld~~~~-------~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      ..++..++.|..+|+|...-       ....++..+....+||+.+| .+.+.+
T Consensus        59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p-~e~~~~  111 (249)
T TIGR03574        59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAP-LDTLLR  111 (249)
T ss_pred             HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCC-HHHHHH
Confidence            56778888999999997631       12333445556678999987 445544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.27  E-value=5.9e-07  Score=76.17  Aligned_cols=94  Identities=22%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccc------cccccCCCCCCCCCCCcceeecCHHHHHHH--------HHcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQ------VTPYTTRPKKPGEEDGKEYHFVSHETMTSL--------ISAGK  175 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~------~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~--------i~~~~  175 (264)
                      +++++|+|+||||||||+|.|....-..-+.      -=.|||+.......+.. -..+|..-|...        --...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g-~~iIDTPGf~~~~l~~~~~~~l~~~  113 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG-GYIIDTPGFRSFGLWHIDPEELAQY  113 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS-EEEECSHHHHT--GCCS-HHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC-cEEEECCCCCccccccCCHHHHHHH
Confidence            3899999999999999999999863211111      12488887654444221 223444444321        11234


Q ss_pred             cceeeeecCc-------eecCCHHHHHHHHHcCCeE
Q psy14166        176 MIEFGEYKGH-------LYGTSSDSVLELVNSGRVA  204 (264)
Q Consensus       176 flE~~~~~g~-------~YGt~~~si~~vl~~Gki~  204 (264)
                      |.|...+.+.       +-..+.++|++++++|.+.
T Consensus       114 F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~  149 (161)
T PF03193_consen  114 FPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEIS  149 (161)
T ss_dssp             SGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-
T ss_pred             HHHhccccCCCCccCCCCCCCCCChHHHHHHCCCCc
Confidence            5555554432       5677889999999999764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.27  E-value=4.3e-06  Score=70.51  Aligned_cols=111  Identities=14%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      ++.+|+|+|++|+||||+++.|+.....                  .|.+..+++.+.+.+.+..+.-..... ....+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~------------------~g~~v~~id~D~~~~~~~~~~~~~~~~-r~~~~~   63 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE------------------AGYPVEVLDGDAVRTNLSKGLGFSKED-RDTNIR   63 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCeEEEEcCccHHHHHhcCCCCChhh-HHHHHH
Confidence            4689999999999999999999986421                  012233333333333222111000000 000011


Q ss_pred             CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ......+.....|.+++++..   .+..+.++...-...+|||+.| .+.+.++
T Consensus        64 ~~~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R  116 (175)
T PRK00889         64 RIGFVANLLTRHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQR  116 (175)
T ss_pred             HHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHh
Confidence            101111223456888888754   2344555544445678999998 5555443

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.15  E-value=3.5e-06  Score=71.15  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+|+|.|+.||||||+++.|.+...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999998753

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.15  E-value=1.3e-06  Score=80.72  Aligned_cols=90  Identities=24%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCC-C-----------cceeecCHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEED-G-----------KEYHFVSHETMTS  169 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~-G-----------~dY~fvs~~~f~~  169 (264)
                      .+++.||+|+||||||||+|+|.......- ..|       .|||+..+....+ |           .+++.+++++...
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t-~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~  241 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELNQKT-GEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQ  241 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhhhhh-hhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHH
Confidence            358999999999999999999987543322 223       3899887654442 1           2444455555433


Q ss_pred             HHHcCCcceeeeecC-------ceecCCHHHHHHHHHcCCeE
Q psy14166        170 LISAGKMIEFGEYKG-------HLYGTSSDSVLELVNSGRVA  204 (264)
Q Consensus       170 ~i~~~~flE~~~~~g-------~~YGt~~~si~~vl~~Gki~  204 (264)
                           .|.|+.++.+       .+-+.+.++|++++++|.+.
T Consensus       242 -----~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~  278 (301)
T COG1162         242 -----AFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIA  278 (301)
T ss_pred             -----HhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCC
Confidence                 2333333322       15567889999999999864

>TIGR00235 udk uridine kinase

Probab=98.14  E-value=4.6e-06  Score=72.55  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+|+|+||||||||||++.|....+
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.14  E-value=1.3e-05  Score=68.29  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK  175 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~  175 (264)
                      .+|...++..   .+.+|+|+|++|+|||||++.|....+.                  .|....+++.+.+...+..+.
T Consensus         7 ~~~~~~~~~~---~~~~i~i~G~~GsGKstla~~l~~~l~~------------------~~~~~~~l~~d~~r~~l~~~~   65 (184)
T TIGR00455         7 KDERQALNGH---RGVVIWLTGLSGSGKSTIANALEKKLES------------------KGYRVYVLDGDNVRHGLNKDL   65 (184)
T ss_pred             HHHHHHHhCC---CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEECChHHHhhhcccc
Confidence            4555554332   4579999999999999999999987431                  011112233333332221111


Q ss_pred             cceeeeecCceecCCHHHHHHHHHcCCeEEEEcCH---HHHHHHhc--CCCCcEEEEEeCCChHHHHH
Q psy14166        176 MIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAY---QSLKVLRS--PAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       176 flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~---~~~~~Lr~--~~~~p~vIfI~pps~e~l~~  238 (264)
                      ......... .|....+..+..+.+|.++|+|...   .....++.  ......+||+..| .+.+.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~  131 (184)
T TIGR00455        66 GFSEEDRKE-NIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQ  131 (184)
T ss_pred             CCCHHHHHH-HHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHH
Confidence            000000000 1111123345577899999999762   33444443  1223467999988 555544

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.13  E-value=1.3e-05  Score=65.70  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|++||||||+++.|.+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            58999999999999999998863

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.12  E-value=1.6e-05  Score=66.02  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      +|+|+|++|+|||||++.|......                  .|.....++.+.+...+..+......... ..|....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~------------------~g~~~~~i~~d~~r~~l~~~~~~~~~~~~-~~~~~~~   61 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ------------------RGRPVYVLDGDNVRHGLNKDLGFSREDRE-ENIRRIA   61 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCCEEEEcCHHHHHhhhhccCCCcchHH-HHHHHHH
Confidence            4789999999999999999987521                  01111222333333222111100000000 0111111


Q ss_pred             HHHHHHHHcCCeEEEEcCH---HHHHHHhc--CCCCcEEEEEeCCChHHHHH
Q psy14166        192 DSVLELVNSGRVAVLNPAY---QSLKVLRS--PAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       192 ~si~~vl~~Gki~vld~~~---~~~~~Lr~--~~~~p~vIfI~pps~e~l~~  238 (264)
                      ...+...++|.++|+|...   .....++.  .+....+||+.+| .+++.+
T Consensus        62 ~~a~~l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~-~e~~~~  112 (149)
T cd02027          62 EVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTP-LEVCEQ  112 (149)
T ss_pred             HHHHHHHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHH
Confidence            2334456789999999763   22222222  1456678999998 555543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.12  E-value=1.1e-05  Score=69.13  Aligned_cols=113  Identities=20%  Similarity=0.339  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHc-----CCcceee----
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISA-----GKMIEFG----  180 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~-----~~flE~~----  180 (264)
                      +++|+|-|+|.||||||++.|....+.-                     |..++-+.|..++..     +.-+++.    
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---------------------~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~   59 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEP---------------------WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRP   59 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS----------------------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSE
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCC---------------------eEEEecChHHhhcCcccccCCccccccccCC
Confidence            4799999999999999999999887643                     222333444443211     1222221    


Q ss_pred             ---eecCceecCCHHHHHHHHHcCCeEEEEcC---HH-HHHHHhc--CCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166        181 ---EYKGHLYGTSSDSVLELVNSGRVAVLNPA---YQ-SLKVLRS--PAFKPLVLFIAPPPFAALKESRITAFA  245 (264)
Q Consensus       181 ---~~~g~~YGt~~~si~~vl~~Gki~vld~~---~~-~~~~Lr~--~~~~p~vIfI~pps~e~l~~~r~~~~~  245 (264)
                         .....+|.....+|....+.|..+|+|--   +. ..+.++.  .++..++|-|.+| ++++++ |..++.
T Consensus        60 ~~~~~~~~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~-RE~~Rg  131 (174)
T PF07931_consen   60 DGGPLFRRLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILER-RERARG  131 (174)
T ss_dssp             EE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHH-HHHHHT
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHH-HHHhcC
Confidence               11122455556788888999999998832   22 2344432  4677889999998 666654 555544

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.12  E-value=8.8e-06  Score=69.65  Aligned_cols=25  Identities=36%  Similarity=0.453  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.|+|+|+.||||||+-+.|++...
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~   27 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALN   27 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence            6799999999999999999998754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.11  E-value=3.5e-05  Score=66.57  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=28.8

Q ss_pred             CcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166         94 IPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus        94 ~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..++.-.++.+   .+.+|+|+|++|+|||||++.|....
T Consensus        11 v~~~~~~~~~~~---~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         11 VTKAQREQLHGH---KGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCHHHHHHhcCC---CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344555554433   45799999999999999999998864

>PRK07261 topology modulation protein; Provisional

Probab=98.10  E-value=1.8e-05  Score=67.10  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|+||||||||++.|+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998764

>KOG1384|consensus

Probab=98.10  E-value=7.3e-06  Score=76.30  Aligned_cols=113  Identities=20%  Similarity=0.309  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~  181 (264)
                      -++|||+|++|+|||-|+--|+..+|.-        +.--...+|.++...|..|+.+|.+..-..+.....++|-+   
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~---   83 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED---   83 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH---
Confidence            3899999999999999999999887641        11113457888888899999999876655555544555533   


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCHH-HHHHHhcC--------------------CCCcEEEEEeCCC
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSP--------------------AFKPLVLFIAPPP  232 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~~-~~~~Lr~~--------------------~~~p~vIfI~pps  232 (264)
                             .-..+|.++++.|++.|+.+--. .++.|-..                    -+++.+|+|.++.
T Consensus        84 -------~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~  148 (348)
T KOG1384|consen   84 -------DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQ  148 (348)
T ss_pred             -------HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecch
Confidence                   33678999999999988876644 45544432                    1457788888875

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.02  E-value=4.5e-05  Score=65.17  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+++|+|+||+|||||++.|.....
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57999999999999999999998753

>PRK06217 hypothetical protein; Validated

Probab=98.01  E-value=1.6e-05  Score=67.82  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|+||||||||++.|.+..
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            59999999999999999999875

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.01  E-value=2.3e-05  Score=78.50  Aligned_cols=120  Identities=15%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             hhhhcCCCC-CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC-c
Q psy14166         99 EVAKLYPME-TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK-M  176 (264)
Q Consensus        99 ev~~~~~~~-~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~-f  176 (264)
                      ++..++|.. ..+.+|+|+|++|||||||++.|+.....                 ..|....+++.+.+...+..+. |
T Consensus       380 iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-----------------~~g~~~~~lD~D~vr~~l~ge~~f  442 (568)
T PRK05537        380 ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-----------------MRGRPVTLLDGDVVRKHLSSELGF  442 (568)
T ss_pred             HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh-----------------ccCceEEEeCCcHHHHhccCCCCC
Confidence            444555533 36779999999999999999999987431                 0122233334333332221110 0


Q ss_pred             ceeeeecCceecCCHHHHHHHHHcCCeEEEEcC-------HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        177 IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA-------YQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       177 lE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~-------~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      -+. + ....|.........+++.|.++|++..       ....+.++..+ ..++||++.| ++++.++
T Consensus       443 ~~~-e-r~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R  508 (568)
T PRK05537        443 SKE-D-RDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQR  508 (568)
T ss_pred             CHH-H-HHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHh
Confidence            000 0 000121111233567888999998853       23344454433 2468999987 6666543

>PRK08118 topology modulation protein; Reviewed

Probab=97.99  E-value=5.9e-05  Score=63.89  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+||+|||||||++.|.+..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999999874

>PRK08233 hypothetical protein; Provisional

Probab=97.98  E-value=5.1e-05  Score=63.62  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+|+|.|++|||||||++.|+...+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36899999999999999999998765

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=4.1e-06  Score=77.76  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC-c-------cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK-F-------TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~-f-------~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~  181 (264)
                      .++++|+||++||||.|+-.|++..+.- .       -.-+...|.+|...|..|+.||.++.-...+.....+|.+.  
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~--   80 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD--   80 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHH--
Confidence            3789999999999999999999987631 0       01123468888888999999998875554443334444332  


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR  217 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr  217 (264)
                              -...|.++.+.||+.|+.+-- -.++.|-
T Consensus        81 --------a~~~i~~i~~rgk~pIlVGGTglY~~aL~  109 (308)
T COG0324          81 --------ALAAIDDILARGKLPILVGGTGLYLKALL  109 (308)
T ss_pred             --------HHHHHHHHHhCCCCcEEEccHHHHHHHHH
Confidence                    256888999999998777653 4455554

>PRK06696 uridine kinase; Validated

Probab=97.96  E-value=9e-06  Score=71.64  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+|+|.|+||||||||++.|++..+
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999998754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.96  E-value=1.1e-05  Score=68.12  Aligned_cols=25  Identities=12%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++|+|+||+||||||+++.|++.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13946 shikimate kinase; Provisional

Probab=97.96  E-value=3.6e-05  Score=65.86  Aligned_cols=26  Identities=42%  Similarity=0.650  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+.|+|+|++||||||+.+.|++..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34789999999999999999999874

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.94  E-value=3.6e-05  Score=63.80  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..|+|+|++|||||||++.|++...
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            47999999999999999999998753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.94  E-value=1.7e-05  Score=68.18  Aligned_cols=111  Identities=19%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHH---cCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLIS---AGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~---~~~flE~~~~~  183 (264)
                      +|..++|+||||+|||||.+.++...+             |..|+  ..|.+|.-.+.++|.+.+.   +..-+.-++..
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lis-------------p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe   94 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLIS-------------PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE   94 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccC-------------CCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence            568999999999999999999998765             33444  3678888888888887652   22222223334


Q ss_pred             Ccee--------cCCHHHHHHHHH-cCCe-EEEEc--------CHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166        184 GHLY--------GTSSDSVLELVN-SGRV-AVLNP--------AYQSLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       184 g~~Y--------Gt~~~si~~vl~-~Gki-~vld~--------~~~~~~~Lr~~~~~p~vIfI~pps  232 (264)
                      +|+.        .+..+...+.++ .+.. -+|+-        +.|-+-.+|+..+.|-+..++.+.
T Consensus        95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T  161 (223)
T COG4619          95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT  161 (223)
T ss_pred             hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence            4421        222333333333 2211 12222        234566777888899999888764

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.93  E-value=4.3e-05  Score=62.35  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+|++|+|||||++.|++...
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            379999999999999999997753

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13949 shikimate kinase; Provisional

Probab=97.93  E-value=4.1e-05  Score=64.98  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|++|||||||.+.|++..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            368999999999999999999874

>PRK14530 adenylate kinase; Provisional

Probab=97.93  E-value=3.8e-05  Score=67.18  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.|+|+||+||||||+++.|++.+.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998764

>PRK04040 adenylate kinase; Provisional

Probab=97.89  E-value=6.3e-05  Score=65.01  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|+|+|++||||||+++.|++..+
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            6899999999999999999998875

>PRK14532 adenylate kinase; Provisional

Probab=97.89  E-value=4e-05  Score=65.22  Aligned_cols=24  Identities=25%  Similarity=0.578  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+||||||+++.|++.+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            388999999999999999998764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.89  E-value=1.4e-05  Score=78.64  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +|..++|+||||+|||||++.|.+.++             |..|+  .+|.+..-+ .+.+.+.   +.++.++..++..
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~  425 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLD-------------PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR  425 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence            579999999999999999999998764             33343  467766555 5555544   3577888888887


Q ss_pred             Cc-eecC---CHHHHHHHHHc
Q psy14166        184 GH-LYGT---SSDSVLELVNS  200 (264)
Q Consensus       184 g~-~YGt---~~~si~~vl~~  200 (264)
                      +| .||.   +.+.+.++++.
T Consensus       426 eNI~~g~~~~~~e~i~~al~~  446 (529)
T TIGR02868       426 DNLRLGRPDATDEELWAALER  446 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHH
Confidence            77 4553   34566666653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.88  E-value=5.2e-06  Score=74.59  Aligned_cols=88  Identities=24%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCCC--------c---ceeecCHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEEDG--------K---EYHFVSHETMTSLI  171 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~G--------~---dY~fvs~~~f~~~i  171 (264)
                      .++++|+|+||||||||+|.|.......- ..+       .||||.......+|        .   +...++.+++    
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t-~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~~~~l~~~~~~~~----  194 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVKQQV-NDISSKLGLGKHTTTHVELFHFHGGLIADTPGFNEFGLWHLEPEQL----  194 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhhccc-cceeccCCCCCCcCCceEEEEcCCcEEEeCCCccccCCCCCCHHHH----
Confidence            37999999999999999999997632211 122       47888764333322        1   1112232222    


Q ss_pred             HcCCcceeeeecC-------ceecCCHHHHHHHHHcCCe
Q psy14166        172 SAGKMIEFGEYKG-------HLYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       172 ~~~~flE~~~~~g-------~~YGt~~~si~~vl~~Gki  203 (264)
                       ...|.|..++.+       .+-..+.++|++++++|.+
T Consensus       195 -~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i  232 (245)
T TIGR00157       195 -TQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEI  232 (245)
T ss_pred             -HHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCC
Confidence             223333332222       1456778999999999975

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.85  E-value=8.9e-05  Score=73.67  Aligned_cols=89  Identities=17%  Similarity=0.302  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+++|++||||||+++.++....                       |..++.+.+..                 |-
T Consensus       368 ~p~LVil~G~pGSGKST~A~~l~~~~g-----------------------~~~vn~D~lg~-----------------~~  407 (526)
T TIGR01663       368 PCEMVIAVGFPGAGKSHFCKKFFQPAG-----------------------YKHVNADTLGS-----------------TQ  407 (526)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHcC-----------------------CeEECcHHHHH-----------------HH
Confidence            568999999999999999999886521                       22344443321                 11


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .-...+++.+++|+.+|+|...       ..++..+..+....+||+..| .+++++
T Consensus       408 ~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~  463 (526)
T TIGR01663       408 NCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKH  463 (526)
T ss_pred             HHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHH
Confidence            1235678899999999999763       234555567777888999987 455443

Note that the EC number for the kinase function is: 2.7.1.78

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.85  E-value=3.1e-05  Score=70.82  Aligned_cols=106  Identities=14%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      ++|+|+|.|||||||+++.|.+...+                  .+.+.+.++.+.+.  +..+.|... ......-|.-
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~------------------~~~~v~~i~~~~~~--~~~~~y~~~-~~Ek~~R~~l   60 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEE------------------KGKEVVIISDDSLG--IDRNDYADS-KKEKEARGSL   60 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHH------------------TT--EEEE-THHHH---TTSSS--G-GGHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh------------------cCCEEEEEcccccc--cchhhhhch-hhhHHHHHHH
Confidence            48999999999999999999986432                  23445556655554  333333211 1122344556


Q ss_pred             HHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        191 SDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      ...|...+..+.++|+|...       +.....|.....-.+||+..| .|...+
T Consensus        61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~-~e~~~~  114 (270)
T PF08433_consen   61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP-LETCLQ  114 (270)
T ss_dssp             HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHH
T ss_pred             HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC-HHHHHH
Confidence            67888889999999999774       344555566666678999998 444443

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK13947 shikimate kinase; Provisional

Probab=97.85  E-value=4e-05  Score=63.99  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+|++||||||+++.|++...
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998753

>PRK06547 hypothetical protein; Provisional

Probab=97.83  E-value=5.9e-05  Score=64.37  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...+|+|.|+||||||||++.|++..
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34688888999999999999999864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.83  E-value=5.4e-05  Score=63.87  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+|+|+|++||||||+++.|.....
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999987653

>PRK03839 putative kinase; Provisional

Probab=97.83  E-value=9.7e-05  Score=62.51  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|++||||||+.+.|++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999875

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.82  E-value=2.2e-05  Score=70.70  Aligned_cols=28  Identities=36%  Similarity=0.587  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+|+|+||||||||||++.++.....
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5799999999999999999999998643

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.80  E-value=5.7e-05  Score=65.48  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|+|.|+||||||||++.|++..+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999998864

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.80  E-value=3.1e-05  Score=77.02  Aligned_cols=78  Identities=26%  Similarity=0.428  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+||||||||||++.|...+.             |..|+  +||.|..-++.....+.+   .++.++..++..
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~-------------~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~  420 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYD-------------PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR  420 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence            568999999999999999999998764             23333  478888878888777764   477888888887


Q ss_pred             Cc-eecC---CHHHHHHHHH
Q psy14166        184 GH-LYGT---SSDSVLELVN  199 (264)
Q Consensus       184 g~-~YGt---~~~si~~vl~  199 (264)
                      .| .||.   +.+.+.++++
T Consensus       421 ~NI~~g~~~at~eei~~a~k  440 (567)
T COG1132         421 ENIALGRPDATDEEIEEALK  440 (567)
T ss_pred             HHHhcCCCCCCHHHHHHHHH
Confidence            77 5884   3455655555

>PRK13948 shikimate kinase; Provisional

Probab=97.79  E-value=9.3e-05  Score=63.82  Aligned_cols=26  Identities=27%  Similarity=0.182  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..|+|+|.+||||||+.+.|++..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l   34 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            34799999999999999999999864

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.79  E-value=0.00025  Score=60.19  Aligned_cols=24  Identities=38%  Similarity=0.699  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|++|+|||||++.|+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHc
Confidence            679999999999999999999874

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.78  E-value=3.7e-05  Score=66.08  Aligned_cols=111  Identities=19%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCC--CCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR--PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR--~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      .|+|+|||||||||+++.|++.++      ++|.+.  --+.+-..+.+.    ..+....+.+|+++..    +.+.++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~------i~hlstgd~~r~~~~~~t~l----g~~~k~~i~~g~lv~d----~i~~~~   67 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG------LPHLDTGDILRAAIAERTEL----GEEIKKYIDKGELVPD----EIVNGL   67 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC------CcEEcHhHHhHhhhccCChH----HHHHHHHHHcCCccch----HHHHHH
Confidence            589999999999999999999843      333221  001111111111    0112223455554432    122244


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHh-------cCCC-CcEEEEEeCCChHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLR-------SPAF-KPLVLFIAPPPFAALKE  238 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr-------~~~~-~p~vIfI~pps~e~l~~  238 (264)
                      -.+.+.+. .....+|+|.-|..+.+++       ..+. ..+++.+..|. +.+-+
T Consensus        68 v~~rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~  122 (178)
T COG0563          68 VKERLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLE  122 (178)
T ss_pred             HHHHHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHH
Confidence            33444333 2112688888875433333       2222 35789999986 44443

>PRK14527 adenylate kinase; Provisional

Probab=97.78  E-value=8.4e-05  Score=63.73  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||+||||||+++.|++.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35799999999999999999999775

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.77  E-value=0.00011  Score=62.10  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|+|+||+||||||+++.|++.+.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=97.77  E-value=0.00017  Score=64.44  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166         91 REEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus        91 ~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..++++.|++-.-+. +..+.+|+|+|||||||||+++.|++.+.
T Consensus        25 ~~~~~~~~~~~~~~~-~~~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         25 STEIITLEERGSSSK-EKTPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             cccccccccccCCcc-CCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446677777665433 22456889999999999999999998753

>PRK12288 GTPase RsgA; Reviewed

Probab=97.77  E-value=5.7e-06  Score=78.15  Aligned_cols=87  Identities=23%  Similarity=0.316  Sum_probs=51.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCC---------Cc---ceeecCHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEED---------GK---EYHFVSHETMTSLI  171 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~---------G~---dY~fvs~~~f~~~i  171 (264)
                      ++++|+|+||||||||+|.|+......- ..|+       |||+........         |.   +.+.++.+++..  
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t-~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~--  282 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILV-GDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQ--  282 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceee-ccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHH--
Confidence            6899999999999999999997643221 2233       788775432221         21   122233333222  


Q ss_pred             HcCCcceeeee------cC-ceecCCHHHHHHHHHcCCe
Q psy14166        172 SAGKMIEFGEY------KG-HLYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       172 ~~~~flE~~~~------~g-~~YGt~~~si~~vl~~Gki  203 (264)
                         .|.|..++      .+ .+...+.++|.+++++|.+
T Consensus       283 ---~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~g~i  318 (347)
T PRK12288        283 ---GFVEFRDYLGTCKFRDCKHDDDPGCALREAVEEGKI  318 (347)
T ss_pred             ---hhHHHHHHhcCCCCCCCccCCCCCChHHHHHHcCCC
Confidence               22222222      21 1556788999999999985

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.76  E-value=2.2e-05  Score=73.81  Aligned_cols=59  Identities=27%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCCCCCCCCcceeecCHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKKPGEEDGKEYHFVSHETMTSL  170 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r~gE~~G~dY~fvs~~~f~~~  170 (264)
                      .+..++|+||||||||||++.|+......=+..    -..|.-+|.   .-++.+.|.+...|..|
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~---~R~iamVFQ~yALyPhm   90 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE---KRGIAMVFQNYALYPHM   90 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---HCCEEEEeCCccccCCC
Confidence            568999999999999999999999854211111    112333442   23567778877766554

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.76  E-value=3.6e-05  Score=78.35  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+|+||||||||++.|++.++             |..|+  .||.+..-++.+.+.+.+   .++.++..++..
T Consensus       478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~  544 (686)
T TIGR03797       478 PGEFVAIVGPSGSGKSTLLRLLLGFET-------------PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF  544 (686)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence            569999999999999999999998864             33443  578887777777777654   567777777777


Q ss_pred             Cce-ec--CCHHHHHHHHHc
Q psy14166        184 GHL-YG--TSSDSVLELVNS  200 (264)
Q Consensus       184 g~~-YG--t~~~si~~vl~~  200 (264)
                      +|. +|  .+.+.+.++++.
T Consensus       545 eNi~~~~~~~~e~i~~al~~  564 (686)
T TIGR03797       545 ENIAGGAPLTLDEAWEAARM  564 (686)
T ss_pred             HHHhcCCCCCHHHHHHHHHH
Confidence            774 45  345666666653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK06761 hypothetical protein; Provisional

Probab=97.74  E-value=0.00031  Score=64.70  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCC--CCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR--PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR--~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      ++|+|.|++|||||||++.|.+..... +..+..++.  .+.+.+..+..+  .+.++|...+.....+.          
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~f~----------   70 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPDFK----------   70 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhHHH----------
Confidence            689999999999999999999886532 223332222  224445555444  48888888775543321          


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH---HHHHHHhcCCCCc-EEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY---QSLKVLRSPAFKP-LVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~---~~~~~Lr~~~~~p-~vIfI~pps~e~l~~~  239 (264)
                        ..-+++.++.|..+|+...-   .....++...+.+ .+-|+..-+.|.++++
T Consensus        71 --~~l~~~~~~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R  123 (282)
T PRK06761         71 --EVLLKNVLKKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIYELPFDKNTEL  123 (282)
T ss_pred             --HHHHHHHHHcCCeEEEEehhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHH
Confidence              34556677788776655542   2234455433332 2444445557777654

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.74  E-value=0.00014  Score=63.39  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+|+|.|+|||||||+++.|+...
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999999875

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=5.2e-05  Score=75.14  Aligned_cols=79  Identities=20%  Similarity=0.352  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +++.++|+|+||+|||||++.|++..+.             ..||  +||.+-.-++.+.+.+.   +.++.++..++..
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~~-------------~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir  412 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLAP-------------TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR  412 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCCC-------------CCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence            5799999999999999999999988753             3343  57777777788888776   4688899999988


Q ss_pred             Cce-ec---CCHHHHHHHHHc
Q psy14166        184 GHL-YG---TSSDSVLELVNS  200 (264)
Q Consensus       184 g~~-YG---t~~~si~~vl~~  200 (264)
                      +|. .|   .+.+.+.+++++
T Consensus       413 eNi~l~~~~~s~e~i~~al~~  433 (559)
T COG4988         413 ENILLARPDASDEEIIAALDQ  433 (559)
T ss_pred             HHhhccCCcCCHHHHHHHHHH
Confidence            883 23   345677777664

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.73  E-value=4.8e-05  Score=67.84  Aligned_cols=26  Identities=42%  Similarity=0.589  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++..++|+||||||||||++.|...+
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57999999999999999999998765

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.73  E-value=2.5e-05  Score=65.92  Aligned_cols=109  Identities=13%  Similarity=0.168  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-CcceeeeecCceec
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KMIEFGEYKGHLYG  188 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~flE~~~~~g~~YG  188 (264)
                      +-+|.|+|.||+|||||++.|....-+                  .|....+++-+.+...+..+ .|-. .....|.. 
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~------------------~g~~~~~LDgD~lR~~l~~dl~fs~-~dR~e~~r-   61 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFA------------------RGIKVYLLDGDNLRHGLNADLGFSK-EDREENIR-   61 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHH------------------TTS-EEEEEHHHHCTTTTTT--SSH-HHHHHHHH-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEecCcchhhccCCCCCCCH-HHHHHHHH-
Confidence            468999999999999999999876421                  12222333333332221111 0000 00000100 


Q ss_pred             CCHHHHHHHHHcCCeEEEEcC-H--HHHHHHhcCCC--CcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPA-Y--QSLKVLRSPAF--KPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~-~--~~~~~Lr~~~~--~p~vIfI~pps~e~l~~~  239 (264)
                      .-.+-..-..++|.+||+..- |  +....+|..--  .-+-|||++| +++++++
T Consensus        62 r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~-~e~~~~R  116 (156)
T PF01583_consen   62 RIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP-LEVCRKR  116 (156)
T ss_dssp             HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES--HHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC-HHHHHHh
Confidence            001233456679998887744 3  44555553211  3467999997 6666653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.72  E-value=5e-05  Score=75.62  Aligned_cols=78  Identities=21%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      ++..++|+|+||+|||||++.|.+.++.             ..|+  .+|.++.-++.+.+.+.   +.++.++..++..
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p-------------~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  434 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRFYDI-------------DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA  434 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCC-------------CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence            5689999999999999999999998653             2333  46777666666666654   3567777777777


Q ss_pred             Cc-eecC----CHHHHHHHHH
Q psy14166        184 GH-LYGT----SSDSVLELVN  199 (264)
Q Consensus       184 g~-~YGt----~~~si~~vl~  199 (264)
                      .| .+|.    +.+.+.++++
T Consensus       435 ~Ni~~~~~~~~~~~~i~~al~  455 (582)
T PRK11176        435 NNIAYARTEQYSREQIEEAAR  455 (582)
T ss_pred             HHHhcCCCCCCCHHHHHHHHH
Confidence            66 3442    3455555544

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.70  E-value=5.3e-05  Score=83.37  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCc-----------------------------------------cccccccCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKF-----------------------------------------TQVTPYTTR  147 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f-----------------------------------------~~~v~~TTR  147 (264)
                      ++..++|+||||||||||++.|.+.+....                                         ...-+.+|+
T Consensus      1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265       1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999999999865310                                         011223566


Q ss_pred             CCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeecCc-eecC---CHHHHHHHHHc
Q psy14166        148 PKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH-LYGT---SSDSVLELVNS  200 (264)
Q Consensus       148 ~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~-~YGt---~~~si~~vl~~  200 (264)
                      .|..|+  ++|.|..-++...+...+   .+..++..++..+| .||.   +.+.|.++++.
T Consensus      1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~ 1334 (1466)
T PTZ00265       1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKF 1334 (1466)
T ss_pred             CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence            677777  488888878877777654   68888888988888 5773   45666666553

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.69  E-value=4.8e-05  Score=77.98  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+||||+|||||++.|.+.++             |..|+  +||.+..-++.+.+.+.+   .++.++..++..
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr  572 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQNLYQ-------------PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR  572 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence            569999999999999999999998865             33343  577776666666665543   466777777777


Q ss_pred             Cc-eecC---CHHHHHHHHH
Q psy14166        184 GH-LYGT---SSDSVLELVN  199 (264)
Q Consensus       184 g~-~YGt---~~~si~~vl~  199 (264)
                      +| .||.   +.+.+.++++
T Consensus       573 eNI~~g~~~~~~e~i~~al~  592 (711)
T TIGR00958       573 ENIAYGLTDTPDEEIMAAAK  592 (711)
T ss_pred             HHHhcCCCCCCHHHHHHHHH
Confidence            77 4563   3455655554

>KOG0058|consensus

Probab=97.69  E-value=2.5e-05  Score=79.12  Aligned_cols=70  Identities=23%  Similarity=0.399  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +|+.++|+||||+||||+++.|.+.+.             |..|.  +||+|..-++..-..+.   +.+...+..++..
T Consensus       493 pGe~vALVGPSGsGKSTiasLL~rfY~-------------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  493 PGEVVALVGPSGSGKSTIASLLLRFYD-------------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence            468999999999999999999988764             33343  57777666666656554   3455666666666


Q ss_pred             Cc-eecCCH
Q psy14166        184 GH-LYGTSS  191 (264)
Q Consensus       184 g~-~YGt~~  191 (264)
                      +| .||...
T Consensus       560 eNI~YG~~~  568 (716)
T KOG0058|consen  560 ENIAYGLDN  568 (716)
T ss_pred             HHHhcCCCC
Confidence            66 677654

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.69  E-value=9.2e-05  Score=61.98  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++||||||+++.|++..
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999874

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.69  E-value=0.00046  Score=58.08  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=17.9

Q ss_pred             EcCCCCCHHHHHHHHHhcCC
Q psy14166        116 IGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       116 iGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|+||+|||||++.|+....
T Consensus         1 ~G~sGsGKSTla~~la~~l~   20 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH   20 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC
Confidence            69999999999999998753

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.68  E-value=0.00015  Score=62.75  Aligned_cols=108  Identities=14%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC-CCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH--cCCcceeeeecCc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD-PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS--AGKMIEFGEYKGH  185 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~-p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~--~~~flE~~~~~g~  185 (264)
                      .+..++|.|++||||||+++.+.... ...+...-+..-|.          ++    ..+.....  ...+.......  
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~----------~~----p~~~~~~~~~~~~~~~~~~~~--   77 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ----------FH----PDYDELLKADPDEASELTQKE--   77 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG----------GS----TTHHHHHHHHCCCTHHHHHHH--
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH----------hc----cchhhhhhhhhhhhHHHHHHH--
Confidence            56788999999999999999998875 21111111111010          11    01111111  01110000000  


Q ss_pred             eecCCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCC
Q psy14166        186 LYGTSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       186 ~YGt~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps  232 (264)
                      ..-.....+..+++++..+|++...   .    .++.++..+++..++||..|.
T Consensus        78 a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~  131 (199)
T PF06414_consen   78 ASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP  131 (199)
T ss_dssp             HHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred             HHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence            0001124567788999999999764   2    456778899999999999874

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.67  E-value=0.00013  Score=63.34  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+|+|+|+||||||||++.|.+..+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457999999999999999999998763

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.67  E-value=0.00013  Score=60.58  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|.|++||||||+++.|++..
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998864

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.67  E-value=5.8e-05  Score=75.31  Aligned_cols=80  Identities=20%  Similarity=0.399  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH  185 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~  185 (264)
                      +|..++|+||||+|||||++.|.+.+|.  ...|          ..+|.+..-++.+.+.+.+   .++.++..++..+|
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~--~G~I----------~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFLPY--QGSL----------KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC--CcEE----------EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            5799999999999999999999987742  1111          2477777777777777653   57888888888887


Q ss_pred             -eecC---CHHHHHHHHHc
Q psy14166        186 -LYGT---SSDSVLELVNS  200 (264)
Q Consensus       186 -~YGt---~~~si~~vl~~  200 (264)
                       .||.   +.+.+.++++.
T Consensus       443 I~~g~~~~~~eei~~al~~  461 (588)
T PRK11174        443 VLLGNPDASDEQLQQALEN  461 (588)
T ss_pred             hhcCCCCCCHHHHHHHHHH
Confidence             4663   34566665553

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.65  E-value=0.00019  Score=72.21  Aligned_cols=149  Identities=17%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCH-
Q psy14166         86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH-  164 (264)
Q Consensus        86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~-  164 (264)
                      .-+||..-.++-.-...+........+|+|.||||||||||++.|+...|..  ..|+.-.-.....   ..+|.|-+. 
T Consensus        41 ~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~v--gvIsmDdy~~~~~---~i~~nfD~P~  115 (656)
T PLN02318         41 PLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSI--AVISMDNYNDSSR---IIDGNFDDPR  115 (656)
T ss_pred             ccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCc--EEEEEcceecchh---hhCccCCChh
Confidence            4467765554333222222222234689999999999999999999887641  1222100000000   111222222 


Q ss_pred             ----HHHHH---HHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCC-hHHH
Q psy14166        165 ----ETMTS---LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP-FAAL  236 (264)
Q Consensus       165 ----~~f~~---~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps-~e~l  236 (264)
                          +.+.+   .+.+|.-+++-.|+ .--+.....-...+....++|+++-......|+  .+..+.|||+.|. ...+
T Consensus       116 a~D~d~L~enL~~Lr~GksV~iPiYD-f~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr--~LlDlkIFVDtdvDirL~  192 (656)
T PLN02318        116 LTDYDTLLDNIHDLKAGKSVQVPIYD-FKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLR--PLLDLRVSVTGGVHFDLV  192 (656)
T ss_pred             hcchhHHHHHHHHHhCCCceecCccc-cccCcccCCceeecCCCcEEEEechhhccHhHH--hhCCEEEEEcCCccHHHH
Confidence                22222   23455444433322 111111100011244677888898886656554  4557899999774 4434


Q ss_pred             HHHHHh
Q psy14166        237 KESRIT  242 (264)
Q Consensus       237 ~~~r~~  242 (264)
                      ++..++
T Consensus       193 RRI~RD  198 (656)
T PLN02318        193 KRVLRD  198 (656)
T ss_pred             HHHHHH
Confidence            433333

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.64  E-value=0.00013  Score=62.76  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|.|+||||||||||++.|....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.64  E-value=5.5e-05  Score=77.25  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+||||+|||||++.|++.++             |..|+  .||.+..-++.+.+.+.+   .++.++..++..
T Consensus       504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~  570 (710)
T TIGR03796       504 PGQRVALVGGSGSGKSTIAKLVAGLYQ-------------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR  570 (710)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence            569999999999999999999998865             33343  477777666766666654   466777777777


Q ss_pred             Cce-ec---CCHHHHHHHHH
Q psy14166        184 GHL-YG---TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG---t~~~si~~vl~  199 (264)
                      +|. +|   .+.+.+.++++
T Consensus       571 eNi~l~~~~~~~~~i~~al~  590 (710)
T TIGR03796       571 DNLTLWDPTIPDADLVRACK  590 (710)
T ss_pred             HHhhCCCCCCCHHHHHHHHH
Confidence            774 44   23455555544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.64  E-value=3.5e-05  Score=72.91  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCCCCCCCCcceeecCHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKKPGEEDGKEYHFVSHETMTSL  170 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r~gE~~G~dY~fvs~~~f~~~  170 (264)
                      .+.+++|+||||||||||++.|+......-+.+    ...|.-||   +.-++.+.|.+.+.|..|
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp---~kR~ig~VFQ~YALFPHl   92 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP---EKRPIGMVFQSYALFPHM   92 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hhcccceeecCcccCCCC
Confidence            568999999999999999999999753322211    12233343   344677888888877665

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.64  E-value=0.00017  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|++|+||||+++.|....
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.63  E-value=4.4e-05  Score=59.93  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|||||||||+++.|++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999874

...

>PRK04182 cytidylate kinase; Provisional

Probab=97.62  E-value=0.00015  Score=60.53  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|++||||||+++.|++..
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999999764

>PRK00625 shikimate kinase; Provisional

Probab=97.61  E-value=0.0002  Score=61.18  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|.+||||||+.+.|++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998874

>PRK14531 adenylate kinase; Provisional

Probab=97.60  E-value=0.00026  Score=60.39  Aligned_cols=24  Identities=29%  Similarity=0.646  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+||+||||||+.+.|++.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999875

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.60  E-value=6.2e-05  Score=76.88  Aligned_cols=78  Identities=23%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+||||+|||||++.|++.++             |..|+  +||.+..-++.+.+.+.+   .++.++..++..
T Consensus       499 ~G~~vaIvG~SGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~  565 (708)
T TIGR01193       499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ-------------ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL  565 (708)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence            569999999999999999999998864             23343  477776666766666543   466677777766


Q ss_pred             Cce-ec----CCHHHHHHHHH
Q psy14166        184 GHL-YG----TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG----t~~~si~~vl~  199 (264)
                      +|. +|    .+.+.+.++++
T Consensus       566 eNi~l~~~~~~~~~~i~~a~~  586 (708)
T TIGR01193       566 ENLLLGAKENVSQDEIWAACE  586 (708)
T ss_pred             HHHhccCCCCCCHHHHHHHHH
Confidence            663 44    23445555544

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.59  E-value=7.7e-05  Score=64.91  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKK  150 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r  150 (264)
                      .+.+++|+||||+|||||+|.++...-...+..    +.||..+|-
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~   69 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA   69 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc
Confidence            578999999999999999999998743223332    346666663

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.59  E-value=4.4e-05  Score=78.32  Aligned_cols=111  Identities=20%  Similarity=0.367  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      .+..|+|+|+||||||||++.|.+.+.             |..|+  .||.|-.-++...+.+.+   .++.++.+++..
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~-------------p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~  564 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLYK-------------PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR  564 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence            468999999999999999999998864             33343  688888888988888864   688899999888


Q ss_pred             Cce-ec---CCHHHHHHHHH-cCCeEEEE-------------------cCHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166        184 GHL-YG---TSSDSVLELVN-SGRVAVLN-------------------PAYQSLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       184 g~~-YG---t~~~si~~vl~-~Gki~vld-------------------~~~~~~~~Lr~~~~~p~vIfI~pps  232 (264)
                      +|. .|   .+.+.+.++.. .|-.-.+.                   +..|-+...|.---+|.++.++.|+
T Consensus       565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT  637 (709)
T COG2274         565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT  637 (709)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence            773 22   23334433333 33221111                   1123455556666689999998874

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.59  E-value=7e-05  Score=68.05  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|....+
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            469999999999999999999998654

>TIGR01351 adk adenylate kinases

Probab=97.58  E-value=0.00013  Score=63.61  Aligned_cols=22  Identities=32%  Similarity=0.672  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|+||+||||||++..|++.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999875

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PLN02924 thymidylate kinase

Probab=97.58  E-value=0.0004  Score=61.57  Aligned_cols=118  Identities=15%  Similarity=0.120  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcc----eeeeecC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMI----EFGEYKG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~fl----E~~~~~g  184 (264)
                      .+.+|+|-|..||||||+++.|.+..... +..+ .+||.|..+...|.        .....+..+.-+    +..-|..
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v-~~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~a   84 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAA-ELWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFSA   84 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCc-eeeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHHH
Confidence            57899999999999999999999876432 2233 35565542211111        111111111000    0000000


Q ss_pred             ceecCCHHHHHHHHHcCCeEEEEcCHH---H-----------HHHHhcCCCCc-EEEEEeCCChHHHHH
Q psy14166        185 HLYGTSSDSVLELVNSGRVAVLNPAYQ---S-----------LKVLRSPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       185 ~~YGt~~~si~~vl~~Gki~vld~~~~---~-----------~~~Lr~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      +.+- ..+.|...+++|+++|+|--..   +           +..+....+.| .+||++.| ++...+
T Consensus        85 dR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~  151 (220)
T PLN02924         85 NRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAE  151 (220)
T ss_pred             HHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHH
Confidence            1111 1355788889999999986542   1           12222223456 67888876 555544

>PRK01184 hypothetical protein; Provisional

Probab=97.58  E-value=0.00054  Score=58.06  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+||+||||||+.+ +++.+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~   24 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM   24 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc
Confidence            479999999999999986 55543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.56  E-value=7e-05  Score=68.79  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc------ccccCCCCCCCCC---------CCc---ceeecCHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQV------TPYTTRPKKPGEE---------DGK---EYHFVSHETMTSLI  171 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~------v~~TTR~~r~gE~---------~G~---dY~fvs~~~f~~~i  171 (264)
                      ++.++|+|+||||||||+|.|.......-+..      -.|||+....-..         .|.   +...++.+++....
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f  240 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF  240 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence            37999999999999999999998643221211      1367776522222         122   21234444443321


Q ss_pred             Hc-CCcceeeeecC-ceecCCHHHHHHHHHcCCe
Q psy14166        172 SA-GKMIEFGEYKG-HLYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       172 ~~-~~flE~~~~~g-~~YGt~~~si~~vl~~Gki  203 (264)
                      .. ..+...-.|.+ .+...+.++|++++++|.+
T Consensus       241 ~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i  274 (287)
T cd01854         241 PEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEI  274 (287)
T ss_pred             HHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCC
Confidence            10 00111111121 1455778999999999975

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG4639 Predicted kinase [General function prediction only]

Probab=97.55  E-value=0.00036  Score=58.95  Aligned_cols=100  Identities=16%  Similarity=0.253  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCc---ee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH---LY  187 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~---~Y  187 (264)
                      .+++|+|+|||||||+++......+                         .++.+.|...+-.....|..  .+|   ..
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~~~~~-------------------------~lsld~~r~~lg~~~~~e~s--qk~~~~~~   55 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENFLQNY-------------------------VLSLDDLRLLLGVSASKENS--QKNDELVW   55 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhCCCcc-------------------------eecHHHHHHHhhhchhhhhc--cccHHHHH
Confidence            6899999999999999876543321                         12333333322100000000  000   11


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCH---HHHHHHh----cCCCCcEEEEEeCCChHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAY---QSLKVLR----SPAFKPLVLFIAPPPFAALK  237 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~---~~~~~Lr----~~~~~p~vIfI~pps~e~l~  237 (264)
                      -......++.++.|+..|.|..-   +..+++.    ..++.+++|.++-|-.+.++
T Consensus        56 ~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~a  112 (168)
T COG4639          56 DILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLA  112 (168)
T ss_pred             HHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHH
Confidence            12234667889999999999874   5444444    46788999999988444443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.55  E-value=0.0001  Score=73.64  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+|+||+|||||++.|.+.++.             ..|+  .+|.+..-++.+.+.+.+   .++.++..++..
T Consensus       360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p-------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~  426 (588)
T PRK13657        360 PGQTVAIVGPTGAGKSTLINLLQRVFDP-------------QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE  426 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCC-------------CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence            5699999999999999999999988653             2332  466666666666665543   355566666666


Q ss_pred             Cc-eecC---CHHHHHHHH
Q psy14166        184 GH-LYGT---SSDSVLELV  198 (264)
Q Consensus       184 g~-~YGt---~~~si~~vl  198 (264)
                      +| .||.   +.+.+.+++
T Consensus       427 ~Ni~~~~~~~~d~~i~~al  445 (588)
T PRK13657        427 DNIRVGRPDATDEEMRAAA  445 (588)
T ss_pred             HHHhcCCCCCCHHHHHHHH
Confidence            66 3442   344444443

>PRK09087 hypothetical protein; Validated

Probab=97.55  E-value=0.00028  Score=62.74  Aligned_cols=122  Identities=19%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHH----H
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL----I  171 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~----i  171 (264)
                      .|.-+...+..  ..+.++|.||+|+|||+|++.+.......                       +++...|...    +
T Consensus        32 a~~~l~~~~~~--~~~~l~l~G~~GsGKThLl~~~~~~~~~~-----------------------~i~~~~~~~~~~~~~   86 (226)
T PRK09087         32 AVSLVDHWPNW--PSPVVVLAGPVGSGKTHLASIWREKSDAL-----------------------LIHPNEIGSDAANAA   86 (226)
T ss_pred             HHHHHHhcccC--CCCeEEEECCCCCCHHHHHHHHHHhcCCE-----------------------EecHHHcchHHHHhh
Confidence            45555543322  24679999999999999999887543211                       1122111111    1


Q ss_pred             HcCC-cceeeeecCceecCCHHHHHHHHHcCCeEEEEcC--HH----HHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166        172 SAGK-MIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA--YQ----SLKVLRSPAFKPLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       172 ~~~~-flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~--~~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~  242 (264)
                      .++- .++...+.......-...+..+.+.|+..|+..+  |.    ....|++.--...++-|.+|+.+.+.+.-++
T Consensus        87 ~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~  164 (226)
T PRK09087         87 AEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK  164 (226)
T ss_pred             hcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence            1110 1110000000001112345556667888888776  22    2345665444578899999998777665443

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.54  E-value=9e-05  Score=75.54  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+|+||+|||||++.|.+.++.             ..|+  .||.+..-++...+.+.+   .++.++..++..
T Consensus       490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p-------------~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~  556 (694)
T TIGR03375       490 PGEKVAIIGRIGSGKSTLLKLLLGLYQP-------------TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR  556 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC-------------CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence            5699999999999999999999988652             2333  466665555555555442   355566666666


Q ss_pred             Cce-ec---CCHHHHHHHHH
Q psy14166        184 GHL-YG---TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG---t~~~si~~vl~  199 (264)
                      +|. +|   .+.+.+.++++
T Consensus       557 eNi~~~~~~~~~~~i~~a~~  576 (694)
T TIGR03375       557 DNIALGAPYADDEEILRAAE  576 (694)
T ss_pred             HHHhCCCCCCCHHHHHHHHH
Confidence            553 34   23455555444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.54  E-value=0.0001  Score=73.66  Aligned_cols=78  Identities=24%  Similarity=0.402  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+|+||+|||||++.|.+.++.             ..|.  .||.+..-++.+.+.+.+   .++.++..++..
T Consensus       366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-------------~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~  432 (592)
T PRK10790        366 SRGFVALVGHTGSGKSTLASLLMGYYPL-------------TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL  432 (592)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCC-------------CCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence            5799999999999999999999988652             2333  467777666666666653   456666666666


Q ss_pred             Cce-ecC--CHHHHHHHHH
Q psy14166        184 GHL-YGT--SSDSVLELVN  199 (264)
Q Consensus       184 g~~-YGt--~~~si~~vl~  199 (264)
                      +|. +|.  +.+.+.++++
T Consensus       433 ~NI~~~~~~~d~~i~~a~~  451 (592)
T PRK10790        433 ANVTLGRDISEEQVWQALE  451 (592)
T ss_pred             HHHHhCCCCCHHHHHHHHH
Confidence            552 332  3445555544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.53  E-value=0.00011  Score=73.35  Aligned_cols=79  Identities=20%  Similarity=0.303  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      ++..++|+||||+|||||++.|.+.++.             ..|+  .+|.+..-++.+.+.+.   +.+..++..++..
T Consensus       365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p-------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~  431 (574)
T PRK11160        365 AGEKVALLGRTGCGKSTLLQLLTRAWDP-------------QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR  431 (574)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC-------------CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence            5699999999999999999999988642             2332  46666555565555543   2455666666666


Q ss_pred             Cce-ec---CCHHHHHHHHHc
Q psy14166        184 GHL-YG---TSSDSVLELVNS  200 (264)
Q Consensus       184 g~~-YG---t~~~si~~vl~~  200 (264)
                      +|. ||   .+.+.+.++++.
T Consensus       432 ~Ni~~~~~~~~~~~i~~al~~  452 (574)
T PRK11160        432 DNLLLAAPNASDEALIEVLQQ  452 (574)
T ss_pred             HHhhcCCCccCHHHHHHHHHH
Confidence            663 44   244566666654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.51  E-value=0.00013  Score=71.84  Aligned_cols=79  Identities=19%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+||||+|||||++.|.+.++             |..|+  .+|.+..-++.+.+.+.+   .+..++..++..
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~  413 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLGFVD-------------PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA  413 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence            569999999999999999999998865             23343  366666656666555543   455566666666


Q ss_pred             Cce-ecC---CHHHHHHHHHc
Q psy14166        184 GHL-YGT---SSDSVLELVNS  200 (264)
Q Consensus       184 g~~-YGt---~~~si~~vl~~  200 (264)
                      +|. +|.   +.+.+.++++.
T Consensus       414 ~Ni~~~~~~~~~~~i~~a~~~  434 (529)
T TIGR02857       414 ENIRLARPDASDAEIRRALER  434 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHH
Confidence            663 332   33455555553

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG1191|consensus

Probab=97.51  E-value=0.0001  Score=71.86  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL  186 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~  186 (264)
                      .+--|+|+|+|+||||+|+|.|....-. ...+++.|||..-+-  +++|+....+|.+-+.+  ..++-+|.       
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~-------  336 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEA-------  336 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHH-------
Confidence            5678999999999999999999987643 556889999998553  46888888888776665  23333332       


Q ss_pred             ecCCHHHHHHHHHcCCeEEEEcCH
Q psy14166        187 YGTSSDSVLELVNSGRVAVLNPAY  210 (264)
Q Consensus       187 YGt~~~si~~vl~~Gki~vld~~~  210 (264)
                        ...+..++.+.+..+|++.+++
T Consensus       337 --~gI~rA~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  337 --LGIERARKRIERADVILLVVDA  358 (531)
T ss_pred             --HhHHHHHHHHhhcCEEEEEecc
Confidence              1234445555666666666665

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.50  E-value=0.00019  Score=72.78  Aligned_cols=111  Identities=10%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+++|.+|+||||+++.|+.....                  .|..+.+++.+.+...+..+....... ....|.
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~------------------~~~~~~~l~~D~~r~~l~~~~~~~~~~-r~~~~~  519 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHA------------------LGRHTYLLDGDNVRHGLNRDLGFSDAD-RVENIR  519 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHH------------------cCCCEEEEcChhhhhccCCCCCCCHHH-HHHHHH
Confidence            4689999999999999999999876421                  123344555555544332111000000 000122


Q ss_pred             CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcC--CCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSP--AFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~--~~~p~vIfI~pps~e~l~~~  239 (264)
                      ...+......++|.++|++..   ....+.++..  ....++||+.+| .+.+.++
T Consensus       520 ~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R  574 (632)
T PRK05506        520 RVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEAR  574 (632)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhh
Confidence            222344556678999998876   3444555532  123478999987 6666653

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.50  E-value=0.00014  Score=72.04  Aligned_cols=78  Identities=18%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      ++..++|+|+||+|||||++.|.+.++             |..|+  .+|.++.-++.+.+.+.   +.++.++..++..
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  423 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYE-------------PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA  423 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence            569999999999999999999998864             22333  46766666666666543   3566777777777


Q ss_pred             Cce-ec----CCHHHHHHHHH
Q psy14166        184 GHL-YG----TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG----t~~~si~~vl~  199 (264)
                      +|. +|    .+.+.+.++++
T Consensus       424 ~Ni~~~~~~~~~~~~i~~~l~  444 (571)
T TIGR02203       424 NNIAYGRTEQADRAEIERALA  444 (571)
T ss_pred             HHHhcCCCCCCCHHHHHHHHH
Confidence            663 33    23444555444

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.49  E-value=0.00014  Score=72.16  Aligned_cols=64  Identities=20%  Similarity=0.336  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+|+||+|||||++.|++.++.             ..|+  .+|.+..-++...+.+.+   .++.++..++..
T Consensus       365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p-------------~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~  431 (576)
T TIGR02204       365 PGETVALVGPSGAGKSTLFQLLLRFYDP-------------QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM  431 (576)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCC-------------CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence            5699999999999999999999998652             2333  456655555555554432   355556666665


Q ss_pred             Cc
Q psy14166        184 GH  185 (264)
Q Consensus       184 g~  185 (264)
                      +|
T Consensus       432 ~N  433 (576)
T TIGR02204       432 EN  433 (576)
T ss_pred             HH
Confidence            55

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.46  E-value=7.1e-05  Score=58.56  Aligned_cols=51  Identities=31%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCH
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSH  164 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~  164 (264)
                      |+|+|++|||||||.|.|...... -....+.+|+.+..+  +.++..+.++|-
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~vDt   54 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKLA-KVSNIPGTTRDPVYGQFEYNNKKFILVDT   54 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTSS-EESSSTTSSSSEEEEEEEETTEEEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHhccccc-cccccccceeeeeeeeeeeceeeEEEEeC
Confidence            799999999999999999975321 123346677776332  234555555543

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0001  Score=65.48  Aligned_cols=27  Identities=48%  Similarity=0.677  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||||||||++.|-...+
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence            579999999999999999999887643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.45  E-value=0.0002  Score=64.52  Aligned_cols=110  Identities=22%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH-------HcCCccee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI-------SAGKMIEF  179 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i-------~~~~flE~  179 (264)
                      ++++++|+||||+|||||++.++...+             |..||  ++|.++.-.+.++..+.-       +.|.....
T Consensus        33 ~Gei~~iiGgSGsGKStlLr~I~Gll~-------------P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss   99 (263)
T COG1127          33 RGEILAILGGSGSGKSTLLRLILGLLR-------------PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS   99 (263)
T ss_pred             CCcEEEEECCCCcCHHHHHHHHhccCC-------------CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence            579999999999999999999998753             34444  467776666665443322       22322222


Q ss_pred             eeecCc-------eecCCHHHHHHHHHcCCeEEEEcCHHH---------------HHHHhcCCCCcEEEEEeCCC
Q psy14166        180 GEYKGH-------LYGTSSDSVLELVNSGRVAVLNPAYQS---------------LKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       180 ~~~~g~-------~YGt~~~si~~vl~~Gki~vld~~~~~---------------~~~Lr~~~~~p~vIfI~pps  232 (264)
                      -+..+|       +-..+...++++... |+-.+-..+.+               +-..|.--+.|-+||++.|.
T Consensus       100 ltV~eNVafplre~~~lp~~~i~~lv~~-KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt  173 (263)
T COG1127         100 LTVFENVAFPLREHTKLPESLIRELVLM-KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT  173 (263)
T ss_pred             cchhHhhheehHhhccCCHHHHHHHHHH-HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence            222333       223455555554322 22222222221               12233446789999999886

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.44  E-value=0.00069  Score=57.69  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+|+|.|+.||||||+++.|.+...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999998754

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.43  E-value=0.00017  Score=66.68  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+-+|.|.||+|||||||++.|...
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999887554

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00065  Score=58.67  Aligned_cols=38  Identities=24%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             cchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166         95 PTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus        95 ~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.++-..+..  .++.+|=|.|.||||||||++.|.+..
T Consensus        10 v~~~~r~~~~~--~~~~viW~TGLSGsGKSTiA~ale~~L   47 (197)
T COG0529          10 VTKQEREALKG--QKGAVIWFTGLSGSGKSTIANALEEKL   47 (197)
T ss_pred             cCHHHHHHHhC--CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence            34444443322  245789999999999999999998864

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.40  E-value=0.00032  Score=60.02  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=58.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCC-cc-cccc----ccCC-CCCCCCCCC-cce-eecCHHHHHHHH---HcCCccee
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDK-FT-QVTP----YTTR-PKKPGEEDG-KEY-HFVSHETMTSLI---SAGKMIEF  179 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~-f~-~~v~----~TTR-~~r~gE~~G-~dY-~fvs~~~f~~~i---~~~~flE~  179 (264)
                      +|+|.|+||||||||++.|+...... .. ..++    |-.+ .++.  ..| .++ +..+.+.|.+.+   .++.-+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~--~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~   78 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRD--EDGNYDFESILDLDLLNKNLHDLLNGKEVEL   78 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccc--cCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence            48899999999999999999874210 00 1111    1111 1111  111 111 123555555543   33433332


Q ss_pred             eeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCCh
Q psy14166        180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPF  233 (264)
Q Consensus       180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~  233 (264)
                      -.|+ +.-+.....-...+....++|+++-......|+.  +..+.|||++|..
T Consensus        79 p~yd-~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~--~~d~~I~vd~~~~  129 (179)
T cd02028          79 PIYD-FRTGKRRGYRKLKLPPSGVVILEGIYALNERLRS--LLDIRVAVSGGVH  129 (179)
T ss_pred             ccce-eECCccCCCceEEeCCCCEEEEecHHhcCHhHHh--hcCEEEEEeCCcc
Confidence            2221 1111111100012335567888877655455543  4678999999855

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.38  E-value=0.00041  Score=60.59  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+||||||+++.|++.+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.35  E-value=0.00094  Score=56.54  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|+||+||||||+++.|++.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7999999999999999999875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.34  E-value=0.00056  Score=64.05  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.|+|+|++|+|||||++.|+..+.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~  187 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFN  187 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            47999999999999999999998743

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.34  E-value=0.00029  Score=70.36  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|..++|+||||+|||||++.|.+.++
T Consensus       340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~  366 (569)
T PRK10789        340 PGQMLGICGPTGSGKSTLLSLIQRHFD  366 (569)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            579999999999999999999998765

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.00035  Score=62.02  Aligned_cols=126  Identities=16%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc----ccCCCCCCC-CCCCcceee---cCHHHHHHH---HHcCCcc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP----YTTRPKKPG-EEDGKEYHF---VSHETMTSL---ISAGKMI  177 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~----~TTR~~r~g-E~~G~dY~f---vs~~~f~~~---i~~~~fl  177 (264)
                      +..+|.|.|+|||||||+++.|...++......++    |-......- |.++.+|..   .+-+.|.+.   +.+|.-+
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v   86 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPV   86 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcc
Confidence            34689999999999999999999987633222222    111111111 233344332   233333332   2344433


Q ss_pred             eeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHH-HHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        178 EFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSL-KVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       178 E~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~-~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      +--.|+ ..-++... -...+...+++|+++=.-.. +.|  ..+.-+-|||++|...++.+
T Consensus        87 ~~P~yd-~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~l--r~~~d~kIfvdtd~D~RliR  144 (218)
T COG0572          87 DLPVYD-YKTHTREP-ETIKVEPNDVVIVEGILLLYDERL--RDLMDLKIFVDTDADVRLIR  144 (218)
T ss_pred             cccccc-hhcccccC-CccccCCCcEEEEecccccccHHH--HhhcCEEEEEeCCccHHHHH
Confidence            322111 11122110 01123345667766544222 233  34567899999996655543

>PRK14529 adenylate kinase; Provisional

Probab=97.30  E-value=0.0016  Score=58.06  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      .|+|+||+||||+|+++.|++.+.- -+.......|..-.   .+..+    -..+...+.+|..+...        ...
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~---~~t~l----g~~i~~~i~~G~lvpde--------i~~   65 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIG---GGTEL----GKKAKEYIDRGDLVPDD--------ITI   65 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhcc---CCChH----HHHHHHHHhccCcchHH--------HHH
Confidence            3889999999999999999988642 11222233443211   11111    12344455555554211        112


Q ss_pred             HHHHHHHHc--CCeEEEEcCHHHHHHHh-------cCCCCc-EEEEEeCCChHHHHH
Q psy14166        192 DSVLELVNS--GRVAVLNPAYQSLKVLR-------SPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       192 ~si~~vl~~--Gki~vld~~~~~~~~Lr-------~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      ..+.+.+.+  .+-.|||+-|..+.+..       ..+..| +||++..|+ +.|.+
T Consensus        66 ~lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~-~~l~~  121 (223)
T PRK14529         66 PMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPR-EVAKN  121 (223)
T ss_pred             HHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHH
Confidence            333444432  34588999985444333       233444 589999885 45544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0014  Score=56.94  Aligned_cols=117  Identities=15%  Similarity=0.282  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-Ccceeee-------
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KMIEFGE-------  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~flE~~~-------  181 (264)
                      +..+.|+|.||+|||||++.|....+.. +..|.|..|.-..     .|.+-.+..+-..+.... -|+....       
T Consensus        32 GeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~-----~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~  105 (258)
T COG4107          32 GEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQP-----RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQ  105 (258)
T ss_pred             CcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCc-----hhHhhhchHHHHHHhhhccceeecCccccceee
Confidence            4899999999999999999999875432 2344444443221     222223333332222110 1111111       


Q ss_pred             -------------ecCceecCCHHHHHHHHHcCCeEEEEcC--H--------HHHHHHhcCCCCcEEEEEeCCC
Q psy14166        182 -------------YKGHLYGTSSDSVLELVNSGRVAVLNPA--Y--------QSLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       182 -------------~~g~~YGt~~~si~~vl~~Gki~vld~~--~--------~~~~~Lr~~~~~p~vIfI~pps  232 (264)
                                   ....+||...++..+.+++-.|-.--++  |        |-++..|+.--.|..||++.|.
T Consensus       106 VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT  179 (258)
T COG4107         106 VSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT  179 (258)
T ss_pred             eccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence                         1123799888888888876555433332  2        3456666666789999999996

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.29  E-value=0.00073  Score=67.48  Aligned_cols=28  Identities=25%  Similarity=0.463  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        107 ETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |.+...|+|+|.+||||||+.+.|++..
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L   30 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMM   30 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHh
Confidence            3466899999999999999999999874

>PRK12289 GTPase RsgA; Reviewed

Probab=97.29  E-value=0.00022  Score=67.63  Aligned_cols=44  Identities=36%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEE  154 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~  154 (264)
                      +++++|+|+||||||||+|.|+...... ...++       ||||....-+.
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l  222 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFEL  222 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEEC
Confidence            3689999999999999999999653221 12333       69987654333

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.27  E-value=0.00031  Score=69.79  Aligned_cols=28  Identities=32%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++..++|+||||+|||||++.|.+.++.
T Consensus       348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~  375 (547)
T PRK10522        348 RGELLFLIGGNGSGKSTLAMLLTGLYQP  375 (547)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999988653

>COG0645 Predicted kinase [General function prediction only]

Probab=97.27  E-value=0.0027  Score=54.24  Aligned_cols=106  Identities=25%  Similarity=0.311  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-----------ccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCccee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQV-----------TPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF  179 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-----------v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~  179 (264)
                      +++++.|-+|+|||||+..|.+..+..  ..           +|.-||.|     .|..+.-++..              
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~--~lrsD~irk~L~g~p~~~r~~-----~g~ys~~~~~~--------------   60 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAI--RLRSDVIRKRLFGVPEETRGP-----AGLYSPAATAA--------------   60 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCce--EEehHHHHHHhcCCcccccCC-----CCCCcHHHHHH--------------
Confidence            678999999999999999999886531  11           22222322     11111111111              


Q ss_pred             eeecCceecCCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166        180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA  245 (264)
Q Consensus       180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~  245 (264)
                            .|.....-...++..|..+|+|...   +    +....+..+.....|-+..| .++++. |..++.
T Consensus        61 ------vy~~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~-rl~aR~  125 (170)
T COG0645          61 ------VYDELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRG-RLAARK  125 (170)
T ss_pred             ------HHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHH-HHHHhC
Confidence                  2333344557789999999999875   2    34455555554444555555 666665 455554

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.25  E-value=0.0012  Score=59.03  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+||+||||+|+++.|++.+
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999875

>PRK07667 uridine kinase; Provisional

Probab=97.25  E-value=0.0008  Score=58.06  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|.|.|++|||||||++.|....
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l   41 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENM   41 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998854

>PLN02348 phosphoribulokinase

Probab=97.25  E-value=0.00097  Score=64.02  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+|.|.|+||||||||++.|.+...
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346889999999999999999998753

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.25  E-value=0.0017  Score=60.18  Aligned_cols=32  Identities=38%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             cCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        103 LYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       103 ~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +...+..+..|+|+|++||||||+.+.|++..
T Consensus       126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            33344566899999999999999999999774

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.25  E-value=0.00021  Score=57.26  Aligned_cols=27  Identities=37%  Similarity=0.634  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|++|+|||||++.|....+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            468999999999999999999998764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00047  Score=62.08  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=26.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFT  139 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~  139 (264)
                      +|..+.|+|+||||||||++.|+.......+
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G   62 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGLEKPSSG   62 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence            5699999999999999999999998654333

>KOG0055|consensus

Probab=97.24  E-value=0.0002  Score=76.52  Aligned_cols=67  Identities=24%  Similarity=0.378  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      .|+.++|+|||||||||++..|.+.+.             |..|.  +||.|..-++..-.++.   +.+..-|..++..
T Consensus      1015 ~GqTvALVG~SGsGKSTvI~LLeRfYd-------------p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYD-------------PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence            579999999999999999988877652             22232  56777776666666654   4566677777777


Q ss_pred             Cc-eec
Q psy14166        184 GH-LYG  188 (264)
Q Consensus       184 g~-~YG  188 (264)
                      +| .||
T Consensus      1082 ENI~YG 1087 (1228)
T KOG0055|consen 1082 ENIAYG 1087 (1228)
T ss_pred             HHHhcc
Confidence            77 688

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.24  E-value=0.00039  Score=71.01  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..++|+|+||+|||||++.|.+.++             |..|+  .+|.+..-++.+.+.+.+   .++.++..++..
T Consensus       482 ~G~~vaivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       482 PGEFIGIVGPSGSGKSTLTKLLQRLYT-------------PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR  548 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence            569999999999999999999998864             22333  466666656666665542   345555556555


Q ss_pred             Cc
Q psy14166        184 GH  185 (264)
Q Consensus       184 g~  185 (264)
                      +|
T Consensus       549 eN  550 (694)
T TIGR01846       549 DN  550 (694)
T ss_pred             HH
Confidence            55

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00075  Score=61.49  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+..+||+|||||||||+++++-..
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrL   50 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRL   50 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcc
Confidence            4689999999999999999877655

>PRK13973 thymidylate kinase; Provisional

Probab=97.21  E-value=0.0011  Score=58.03  Aligned_cols=26  Identities=27%  Similarity=0.264  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +++|+|-|+.||||||+++.|.+...
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~   28 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLR   28 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999998753

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.21  E-value=0.00029  Score=55.90  Aligned_cols=23  Identities=39%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .++.++|+||||+|||||++.|.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            35899999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.21  E-value=0.0004  Score=53.55  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +..++|+||+|+||||+++.|+.....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            468999999999999999999987653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13974 thymidylate kinase; Provisional

Probab=97.21  E-value=0.0032  Score=55.05  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +.+|+|.|+.||||||+++.|.+..+.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~   29 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPS   29 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            589999999999999999999987653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.21  E-value=0.00033  Score=60.90  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>cd01855 YqeH YqeH

Probab=97.20  E-value=0.00031  Score=59.88  Aligned_cols=45  Identities=27%  Similarity=0.202  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC-------CccccccccCCCCCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD-------KFTQVTPYTTRPKKPGEE  154 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~-------~f~~~v~~TTR~~r~gE~  154 (264)
                      +..++|+|.+|||||||+|.|....-.       .-....|.||+.+.....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~  178 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL  178 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec
Confidence            368999999999999999999975311       112346778888765443

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.20  E-value=0.00033  Score=60.59  Aligned_cols=27  Identities=37%  Similarity=0.509  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.0011  Score=56.59  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-cc-CCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-YT-TRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-~T-TR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      .|+|.||+||||||+++.|++.+.-.+   ++ .+ =|..-  ..     .-+|-++|.+...++.-+...         
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~---vsaG~iFR~~A--~e-----~gmsl~ef~~~AE~~p~iD~~---------   62 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKL---VSAGTIFREMA--RE-----RGMSLEEFSRYAEEDPEIDKE---------   62 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCce---eeccHHHHHHH--HH-----cCCCHHHHHHHHhcCchhhHH---------
Confidence            589999999999999999998753211   11 00 01100  00     113445665554444332211         


Q ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166        190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps  232 (264)
                       .|.-+..+.....|||.+...+.- ++  ....+-||+.+|-
T Consensus        63 -iD~rq~e~a~~~nvVlegrLA~Wi-~k--~~adlkI~L~Apl  101 (179)
T COG1102          63 -IDRRQKELAKEGNVVLEGRLAGWI-VR--EYADLKIWLKAPL  101 (179)
T ss_pred             -HHHHHHHHHHcCCeEEhhhhHHHH-hc--cccceEEEEeCcH
Confidence             222233333355677787765432 22  3345569999983

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.19  E-value=0.00035  Score=61.60  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p   52 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRP   52 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999988643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.19  E-value=0.00034  Score=60.84  Aligned_cols=28  Identities=39%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~   56 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRP   56 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence            4689999999999999999999988653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0057|consensus

Probab=97.19  E-value=0.00017  Score=71.25  Aligned_cols=79  Identities=24%  Similarity=0.315  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH  185 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~  185 (264)
                      +|.-|+|+|+|||||||+++.|...+.  +...|          -+||.|..-++.+.+++.|   .++..|.+.+.--|
T Consensus       377 kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I----------~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N  444 (591)
T KOG0057|consen  377 KGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSI----------LIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN  444 (591)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcE----------EECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence            678999999999999999999998753  21111          2588888888888888765   35555544444333


Q ss_pred             -eecCCHHHHHHHHH
Q psy14166        186 -LYGTSSDSVLELVN  199 (264)
Q Consensus       186 -~YGt~~~si~~vl~  199 (264)
                       .||.+..+-++|++
T Consensus       445 I~YGn~sas~eeV~e  459 (591)
T KOG0057|consen  445 IKYGNPSASDEEVVE  459 (591)
T ss_pred             hhcCCCCcCHHHHHH
Confidence             56655443344433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.18  E-value=0.0017  Score=55.62  Aligned_cols=28  Identities=29%  Similarity=0.595  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|+|||||++.|+...|.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4589999999999999999999987654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.18  E-value=0.00035  Score=59.57  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.17  E-value=0.0019  Score=53.03  Aligned_cols=106  Identities=20%  Similarity=0.289  Sum_probs=53.7

Q ss_pred             EEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC-CcceeecCHHHHHHHHHcCCcceeeeecCceecCCHHH
Q psy14166        115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED-GKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDS  193 (264)
Q Consensus       115 LiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~-G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~s  193 (264)
                      |+|||||||+|++++|++.+. ..+..+...=|.    ++. +-.    .-..+...+.+|..+...        .-.+-
T Consensus         1 i~G~PgsGK~t~~~~la~~~~-~~~is~~~llr~----~~~~~s~----~g~~i~~~l~~g~~vp~~--------~v~~l   63 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG-LVHISVGDLLRE----EIKSDSE----LGKQIQEYLDNGELVPDE--------LVIEL   63 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT-SEEEEHHHHHHH----HHHTTSH----HHHHHHHHHHTTSS--HH--------HHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcC-cceechHHHHHH----HHhhhhH----HHHHHHHHHHhhccchHH--------HHHHH
Confidence            789999999999999999853 111111111111    000 000    013455556666665321        11123


Q ss_pred             HHHHHH---cCCeEEEEcCHHHHHHH---hc----CCCCc-EEEEEeCCChHHHHH
Q psy14166        194 VLELVN---SGRVAVLNPAYQSLKVL---RS----PAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       194 i~~vl~---~Gki~vld~~~~~~~~L---r~----~~~~p-~vIfI~pps~e~l~~  238 (264)
                      +...+.   ..+-.|||+-|....++   ..    ....| .+|+++.|. +.+.+
T Consensus        64 l~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~-~~~~~  118 (151)
T PF00406_consen   64 LKERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD-ETLIE  118 (151)
T ss_dssp             HHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-HHHHH
T ss_pred             HHHHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-hhhhh
Confidence            333333   34678999998544333   33    45556 689999874 44444

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.17  E-value=0.00037  Score=60.30  Aligned_cols=27  Identities=33%  Similarity=0.509  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.17  E-value=0.00032  Score=54.92  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|.|++|||||||++.|.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999874

...

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.16  E-value=0.00013  Score=66.72  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|+|+|+||||||||++.|.+..+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC
Confidence            478999999999999999998764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.16  E-value=0.0004  Score=60.09  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.0018  Score=55.25  Aligned_cols=124  Identities=15%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCC-ccc--c----cc-----------c-cCCCC----CCCC-CCCcceeecCHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDK-FTQ--V----TP-----------Y-TTRPK----KPGE-EDGKEYHFVSHET  166 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~-f~~--~----v~-----------~-TTR~~----r~gE-~~G~dY~fvs~~~  166 (264)
                      --|.|.|++|||||||+.+|++...+. |..  .    |.           . +|-..    +.+. .--++=+-|+.+.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~   85 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG   85 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence            468999999999999999998653221 111  1    11           0 11000    0000 0002223455556


Q ss_pred             HHHH--------HHcCCcceeeeecCc--eecCCHHHHHHHHHcCCeEEEEcCHH----HHHHHhcCCCCcEEEEEeCCC
Q psy14166        167 MTSL--------ISAGKMIEFGEYKGH--LYGTSSDSVLELVNSGRVAVLNPAYQ----SLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       167 f~~~--------i~~~~flE~~~~~g~--~YGt~~~si~~vl~~Gki~vld~~~~----~~~~Lr~~~~~p~vIfI~pps  232 (264)
                      +++.        ....+.+---+....  .--.-.+.|++++..++..|..++..    .++.++..  ..++|||+|-+
T Consensus        86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~--~~v~v~lt~~N  163 (179)
T COG1618          86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKL--GGVYVFLTPEN  163 (179)
T ss_pred             HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhc--CCEEEEEccch
Confidence            6532        112233322222111  11122478899999999888888866    77777653  46777898877


Q ss_pred             hHHH
Q psy14166        233 FAAL  236 (264)
Q Consensus       233 ~e~l  236 (264)
                      .+.+
T Consensus       164 R~~i  167 (179)
T COG1618         164 RNRI  167 (179)
T ss_pred             hhHH
Confidence            6644

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.16  E-value=0.00039  Score=60.14  Aligned_cols=28  Identities=43%  Similarity=0.610  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~   52 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEEP   52 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.16  E-value=0.0004  Score=59.93  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.15  E-value=0.00035  Score=60.79  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PLN02674 adenylate kinase

Probab=97.15  E-value=0.0011  Score=59.90  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ...|+|+||+||||+|++..|++.+.
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999998764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.15  E-value=0.00039  Score=60.51  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.15  E-value=0.00042  Score=60.37  Aligned_cols=28  Identities=36%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~   57 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDNP   57 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.00068  Score=60.96  Aligned_cols=27  Identities=44%  Similarity=0.602  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..|+|+||||+|||||++.|....+
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lngl~d   55 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNGLVD   55 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccC
Confidence            468999999999999999999988644

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.14  E-value=0.00039  Score=59.56  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.+++|+||||+|||||++.|..
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            568999999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.14  E-value=0.0004  Score=61.37  Aligned_cols=27  Identities=41%  Similarity=0.525  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.14  E-value=0.0006  Score=67.63  Aligned_cols=27  Identities=37%  Similarity=0.720  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|..++|+||||+|||||++.|++.++
T Consensus       343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  369 (544)
T TIGR01842       343 AGEALAIIGPSGSGKSTLARLIVGIWP  369 (544)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            569999999999999999999998865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.14  E-value=0.00062  Score=68.31  Aligned_cols=27  Identities=26%  Similarity=0.516  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|..++|+||||+|||||++.|++.++
T Consensus       360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  386 (585)
T TIGR01192       360 AGQTVAIVGPTGAGKTTLINLLQRVYD  386 (585)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHccCCC
Confidence            579999999999999999999998765

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=97.14  E-value=0.00059  Score=67.97  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||+|||||++.|.+.++
T Consensus       367 ~G~~~aivG~sGsGKSTl~~ll~g~~~  393 (555)
T TIGR01194       367 QGDIVFIVGENGCGKSTLAKLFCGLYI  393 (555)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            569999999999999999999998764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.14  E-value=0.00041  Score=60.99  Aligned_cols=28  Identities=32%  Similarity=0.410  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999988653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.13  E-value=0.0004  Score=59.54  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            468999999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.13  E-value=0.00042  Score=60.06  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01895 EngA2 EngA2 subfamily

Probab=97.13  E-value=0.0018  Score=52.56  Aligned_cols=56  Identities=27%  Similarity=0.375  Sum_probs=36.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM  167 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f  167 (264)
                      ..|+|+|.+|+|||||+++|..... ......+.||+.....  +.+|.+|.+++...+
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~   60 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGI   60 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCC
Confidence            5699999999999999999987532 1223345566655332  235566666665443

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK13808 adenylate kinase; Provisional

Probab=97.13  E-value=0.0016  Score=61.28  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+||||+|+...|++.+.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388999999999999999998753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.13  E-value=0.00045  Score=59.92  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.12  E-value=0.0041  Score=57.43  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .++|+|+|+|||||||+++.|..
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH
Confidence            36999999999999999999964

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.12  E-value=0.0011  Score=64.28  Aligned_cols=105  Identities=24%  Similarity=0.318  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      +.|+|+|-++||||||.|+|+...- -.....|.|||.+..+  +..|.++..+|..-++..         .  .+.+-.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~---------~--~~~l~~   71 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG---------D--EDELQE   71 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcC---------C--chHHHH
Confidence            5899999999999999999998743 2344578899998654  556777766654333210         0  000111


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH---------HHHHHHhcCCCCcEEEEE
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY---------QSLKVLRSPAFKPLVLFI  228 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~---------~~~~~Lr~~~~~p~vIfI  228 (264)
                      .-.+....++++..++|+.+|.         +.++.|| ..-+|.++-+
T Consensus        72 ~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpviLvv  119 (444)
T COG1160          72 LIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVILVV  119 (444)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEE
Confidence            1234455566666666555553         2356676 3335555444

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.12  E-value=0.00045  Score=60.91  Aligned_cols=27  Identities=48%  Similarity=0.568  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.12  E-value=0.00045  Score=60.29  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   57 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLKP   57 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999988643

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.12  E-value=0.0046  Score=53.13  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy14166        112 PVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .|+|.|.||+||||+.++|..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~   22 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLRE   22 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHH
Confidence            689999999999999999983

>PLN02199 shikimate kinase

Probab=97.12  E-value=0.0025  Score=59.19  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.|+|+|.+|+||||+.+.|++..
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~L  126 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVL  126 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35899999999999999999999763

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.11  E-value=0.00047  Score=60.14  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=97.11  E-value=0.00032  Score=74.99  Aligned_cols=70  Identities=26%  Similarity=0.393  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      .|..++|+|||||||||+++.|...+.             |..|+  +||.|-.-++.......   +.+...+...+..
T Consensus       378 ~G~~valVG~SGsGKST~i~LL~Rfyd-------------P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~  444 (1228)
T KOG0055|consen  378 SGQTVALVGPSGSGKSTLIQLLARFYD-------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR  444 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence            468999999999999999999988753             33444  46776665555555443   2344456666666


Q ss_pred             Cc-eecCCH
Q psy14166        184 GH-LYGTSS  191 (264)
Q Consensus       184 g~-~YGt~~  191 (264)
                      +| .||.+.
T Consensus       445 eNI~~G~~d  453 (1228)
T KOG0055|consen  445 ENIRYGKPD  453 (1228)
T ss_pred             HHHhcCCCc
Confidence            66 688744

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.11  E-value=0.00044  Score=59.94  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            468999999999999999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.10  E-value=0.00048  Score=60.30  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            468999999999999999999998754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.0004  Score=61.77  Aligned_cols=26  Identities=42%  Similarity=0.662  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++.+|+||||||||||++.|-..+
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhc
Confidence            45899999999999999998876553

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.09  E-value=0.00044  Score=60.84  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            468999999999999999999998764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK05439 pantothenate kinase; Provisional

Probab=97.09  E-value=0.001  Score=62.06  Aligned_cols=26  Identities=31%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+-+|.|.|++||||||+++.|....
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44588899999999999999998743

>PHA00729 NTP-binding motif containing protein

Probab=97.08  E-value=0.0042  Score=55.48  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=34.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCcc-ccccccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFT-QVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI  171 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~-~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i  171 (264)
                      ..|+|+|++|+|||||+..|+......+. ....+      ..-..+....|++.+++...+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~------~~~d~~~~~~fid~~~Ll~~L   73 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD------DAWQYVQNSYFFELPDALEKI   73 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchh------hHHhcCCcEEEEEHHHHHHHH
Confidence            36899999999999999999876321010 00111      001234566788887776655

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.08  E-value=0.00053  Score=59.82  Aligned_cols=27  Identities=41%  Similarity=0.621  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.06  E-value=0.00054  Score=58.92  Aligned_cols=28  Identities=29%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   50 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKF   50 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999988653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.06  E-value=0.00054  Score=59.98  Aligned_cols=26  Identities=46%  Similarity=0.621  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46899999999999999999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.06  E-value=0.00057  Score=57.91  Aligned_cols=27  Identities=41%  Similarity=0.647  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.06  E-value=0.00055  Score=59.28  Aligned_cols=27  Identities=37%  Similarity=0.583  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999999864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.06  E-value=0.00058  Score=57.24  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.05  E-value=0.0005  Score=66.80  Aligned_cols=58  Identities=26%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM  167 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f  167 (264)
                      .|--+||+|+|+||||+|+|.|++.+-. ....++.|||.--+.  .++|...+.+|.+-.
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A-IVTdI~GTTRDviee~i~i~G~pv~l~DTAGi  275 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRA-IVTDIAGTTRDVIEEDINLNGIPVRLVDTAGI  275 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCce-EecCCCCCccceEEEEEEECCEEEEEEecCCc
Confidence            4678999999999999999999998754 456789999997543  367887777765544

>PLN03232 ABC transporter C family member; Provisional

Probab=97.05  E-value=0.00076  Score=74.61  Aligned_cols=78  Identities=13%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..|+|+|+||+|||||++.|.+.++             |..|+  +||+|..-++.+.+.+.+   .++.++..++..
T Consensus      1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~-------------p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232       1261 PSEKVGVVGRTGAGKSSMLNALFRIVE-------------LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-------------CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence            569999999999999999999998754             33454  588888777877777653   577788888777


Q ss_pred             Cce-ec--CCHHHHHHHHH
Q psy14166        184 GHL-YG--TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG--t~~~si~~vl~  199 (264)
                      .|+ ++  .+.+.+.++++
T Consensus      1328 ~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232       1328 FNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred             HHcCCCCCCCHHHHHHHHH
Confidence            764 22  24455666555

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.05  E-value=0.00058  Score=59.85  Aligned_cols=27  Identities=41%  Similarity=0.549  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            469999999999999999999999864

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.04  E-value=0.00057  Score=60.48  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.04  E-value=0.00056  Score=59.42  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.04  E-value=0.00059  Score=61.33  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.04  E-value=0.0013  Score=63.40  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+.|+|+|++|+|||||++.|+..+
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56899999999999999999999874

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.04  E-value=0.00064  Score=57.33  Aligned_cols=27  Identities=26%  Similarity=0.461  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14526 adenylate kinase; Provisional

Probab=97.04  E-value=0.0028  Score=55.79  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      |+|+||+||||||+++.|++.+.
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~   25 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN   25 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999997753

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.04  E-value=0.00059  Score=60.16  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.03  E-value=0.00059  Score=58.96  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.03  E-value=0.0006  Score=59.56  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   54 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIERP   54 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.03  E-value=0.0006  Score=59.71  Aligned_cols=28  Identities=25%  Similarity=0.517  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~   55 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            5689999999999999999999988653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.03  E-value=0.00065  Score=58.32  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+|++|+|||||++.|+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   52 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQP   52 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4589999999999999999999998653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.03  E-value=0.00059  Score=59.86  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.02  E-value=0.00064  Score=60.02  Aligned_cols=27  Identities=37%  Similarity=0.461  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998864

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd01858 NGP_1 NGP-1

Probab=97.02  E-value=0.00054  Score=56.72  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP  148 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~  148 (264)
                      +..++++|+||||||||+|.|...... -...++.|||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~  139 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKV  139 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEe
Confidence            356789999999999999999875321 22345555554

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.02  E-value=0.0006  Score=59.80  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            569999999999999999999998865

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.00  E-value=0.00067  Score=55.80  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            568999999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.00  E-value=0.00068  Score=58.81  Aligned_cols=28  Identities=36%  Similarity=0.623  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||+|+|||||++.|+...+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   54 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLPP   54 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999998653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.00  E-value=0.00071  Score=58.13  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.99  E-value=0.00074  Score=56.92  Aligned_cols=27  Identities=37%  Similarity=0.629  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            468999999999999999999998764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.99  E-value=0.00071  Score=59.45  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            468999999999999999999998764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.99  E-value=0.00066  Score=60.04  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999999864

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.99  E-value=0.0007  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            469999999999999999999998864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.99  E-value=0.00071  Score=58.30  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            569999999999999999999998864

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.99  E-value=0.00069  Score=60.05  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998765

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.99  E-value=0.00062  Score=58.94  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+ +++|+||+|+|||||++.|+...+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence            36 999999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.99  E-value=0.00086  Score=48.09  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +...+|+|++|+|||||+..+.-.
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999987644

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.98  E-value=0.0007  Score=59.92  Aligned_cols=27  Identities=44%  Similarity=0.662  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.98  E-value=0.0007  Score=60.13  Aligned_cols=27  Identities=37%  Similarity=0.593  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.97  E-value=0.00076  Score=59.52  Aligned_cols=28  Identities=32%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   37 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQP   37 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.97  E-value=0.00073  Score=57.42  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.97  E-value=0.00074  Score=62.83  Aligned_cols=58  Identities=24%  Similarity=0.409  Sum_probs=40.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC-CCCccccc------cccCC-CCCCCCCCCcceeecCHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD-PDKFTQVT------PYTTR-PKKPGEEDGKEYHFVSHETMTSL  170 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~-p~~f~~~v------~~TTR-~~r~gE~~G~dY~fvs~~~f~~~  170 (264)
                      .+++++|.||||+|||||++.++... |+ -+.++      -.+|+ +.+   .-.+.|.|.+.+.|..|
T Consensus        27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~-~G~I~~~~~~l~D~~~~~~~---~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          27 SGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVR---DRKVGFVFQHYALFPHM   92 (345)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCcCCCC-CceEEECCEeccchhccchh---hcceeEEEechhhcccc
Confidence            56999999999999999999999874 43 22221      12333 211   13477888888888765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.96  E-value=0.00076  Score=58.68  Aligned_cols=27  Identities=33%  Similarity=0.449  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            468999999999999999999998864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>KOG0734|consensus

Probab=96.96  E-value=0.0014  Score=65.07  Aligned_cols=71  Identities=24%  Similarity=0.486  Sum_probs=51.3

Q ss_pred             chHhhhhcCCCCC--------CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHH
Q psy14166         96 TYEEVAKLYPMET--------LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETM  167 (264)
Q Consensus        96 ~Yeev~~~~~~~~--------~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f  167 (264)
                      --|||+.+-..|.        -++=|.|+||+|.|||-|++.++..                     .|++++|.+-.+|
T Consensus       315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE---------------------A~VPFF~~sGSEF  373 (752)
T KOG0734|consen  315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE---------------------AGVPFFYASGSEF  373 (752)
T ss_pred             HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc---------------------cCCCeEeccccch
Confidence            3677887765442        3467999999999999999988854                     3577888888888


Q ss_pred             HHHHHcCCcceeeeecCceecCCHHHHHHHHHcCC
Q psy14166        168 TSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGR  202 (264)
Q Consensus       168 ~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gk  202 (264)
                      ++|.               -|.-...|++..++.|
T Consensus       374 dEm~---------------VGvGArRVRdLF~aAk  393 (752)
T KOG0734|consen  374 DEMF---------------VGVGARRVRDLFAAAK  393 (752)
T ss_pred             hhhh---------------hcccHHHHHHHHHHHH
Confidence            8762               2444566777666544

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.95  E-value=0.00071  Score=59.33  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|....+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            468999999999999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.95  E-value=0.00085  Score=56.93  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|....+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.95  E-value=0.00078  Score=58.23  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.95  E-value=0.00076  Score=60.92  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998864

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.95  E-value=0.00078  Score=59.54  Aligned_cols=29  Identities=38%  Similarity=0.457  Sum_probs=24.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .++.+++|+||+|||||||++.|+...+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            35679999999999999999999987553

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.95  E-value=0.00083  Score=56.82  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.94  E-value=0.0008  Score=60.38  Aligned_cols=27  Identities=19%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            568999999999999999999998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.94  E-value=0.00077  Score=59.34  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.94  E-value=0.00079  Score=59.78  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

>KOG0056|consensus

Probab=96.94  E-value=0.00059  Score=67.12  Aligned_cols=72  Identities=24%  Similarity=0.314  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH  185 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~  185 (264)
                      .|+.|+|+||||+||||+++.|...+.-. ..+          -++||.|..-|+.......|   .++..+...+..-|
T Consensus       563 pGktvAlVG~SGaGKSTimRlLfRffdv~-sGs----------I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN  631 (790)
T KOG0056|consen  563 PGKTVALVGPSGAGKSTIMRLLFRFFDVN-SGS----------ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN  631 (790)
T ss_pred             CCcEEEEECCCCCchhHHHHHHHHHhhcc-Cce----------EEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence            46999999999999999999998875311 111          15688888777777776653   44555544444333


Q ss_pred             -eecCCH
Q psy14166        186 -LYGTSS  191 (264)
Q Consensus       186 -~YGt~~  191 (264)
                       -||.+-
T Consensus       632 Iryak~~  638 (790)
T KOG0056|consen  632 IRYAKPS  638 (790)
T ss_pred             eeecCCC
Confidence             465443

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.94  E-value=0.00081  Score=59.92  Aligned_cols=28  Identities=25%  Similarity=0.249  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   55 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRLAP   55 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999998654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.94  E-value=0.00085  Score=56.39  Aligned_cols=27  Identities=41%  Similarity=0.629  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.94  E-value=0.00079  Score=60.00  Aligned_cols=27  Identities=37%  Similarity=0.513  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            568999999999999999999998754

>TIGR00436 era GTP-binding protein Era

Probab=96.93  E-value=0.00074  Score=61.15  Aligned_cols=38  Identities=29%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      .|+|+|++|||||||+|.|.+.... .....+.|||..-
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i   39 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRI   39 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcE
Confidence            5899999999999999999986431 2245678998753

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.93  E-value=0.0012  Score=73.17  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +|..|+|+|+||+|||||++.|.+.++             |..|+  +||+|..-++.+.+...   +.++.++..++..
T Consensus      1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~-------------~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957      1311 GGEKVGIVGRTGAGKSSLTLGLFRINE-------------SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcc-------------CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence            569999999999999999999998754             23343  58888888888877765   3577788888887


Q ss_pred             Cce--ec-CCHHHHHHHHHc
Q psy14166        184 GHL--YG-TSSDSVLELVNS  200 (264)
Q Consensus       184 g~~--YG-t~~~si~~vl~~  200 (264)
                      .|+  +| .+.+.+.++++.
T Consensus      1378 ~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957      1378 MNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred             HHcCcccCCCHHHHHHHHHH
Confidence            775  33 355666666663

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.93  E-value=0.00073  Score=58.54  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            468999999999999999999998864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.93  E-value=0.00083  Score=58.70  Aligned_cols=27  Identities=41%  Similarity=0.461  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            469999999999999999999998864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.92  E-value=0.00079  Score=60.00  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFYKP   57 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            4689999999999999999999998653

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.92  E-value=0.00085  Score=59.32  Aligned_cols=27  Identities=44%  Similarity=0.657  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.92  E-value=0.00086  Score=59.62  Aligned_cols=27  Identities=41%  Similarity=0.639  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            569999999999999999999998864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.92  E-value=0.00084  Score=59.14  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            568999999999999999999998864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK06620 hypothetical protein; Validated

Probab=96.91  E-value=0.005  Score=54.27  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             HHHHHHcCCeEEEEcC--HHH--HHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        194 VLELVNSGRVAVLNPA--YQS--LKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       194 i~~vl~~Gki~vld~~--~~~--~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      +..+.++|+.+|+..+  |..  +..|++.--.-.++=|.+|+.+.+.+..+
T Consensus       106 ~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~  157 (214)
T PRK06620        106 FNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF  157 (214)
T ss_pred             HHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence            3444578888877776  322  35566544445688899999887665443

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.91  E-value=0.00086  Score=58.90  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            468999999999999999999998865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.91  E-value=0.00089  Score=55.36  Aligned_cols=42  Identities=26%  Similarity=0.218  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP  151 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~  151 (264)
                      ....++|+|.+|||||||+|.|....... ....++||+....
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~  140 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQE  140 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEE
Confidence            34789999999999999999999864321 2245788887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.91  E-value=0.0009  Score=59.67  Aligned_cols=27  Identities=48%  Similarity=0.826  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.91  E-value=0.00091  Score=60.52  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p   76 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIEP   76 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999998653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.90  E-value=0.00088  Score=59.58  Aligned_cols=27  Identities=37%  Similarity=0.450  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998763

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.90  E-value=0.00085  Score=61.29  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   63 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLIIS   63 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999998653

>PTZ00243 ABC transporter; Provisional

Probab=96.90  E-value=0.0012  Score=73.21  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      +|..|+|+|+||+|||||++.|.+.+.             |..|+  +||+|..-++..++.+.+   .++.++..++..
T Consensus      1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~-------------p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243       1335 PREKVGIVGRTGSGKSTLLLTFMRMVE-------------VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence            568999999999999999999998764             23343  588887777777777653   577777777777


Q ss_pred             Cce--e-cCCHHHHHHHHHc
Q psy14166        184 GHL--Y-GTSSDSVLELVNS  200 (264)
Q Consensus       184 g~~--Y-Gt~~~si~~vl~~  200 (264)
                      .|+  + ..+.+.|.++++.
T Consensus      1402 eNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243       1402 QNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred             HHhCcccCCCHHHHHHHHHH
Confidence            664  1 1245667666664

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.90  E-value=0.00088  Score=59.68  Aligned_cols=26  Identities=38%  Similarity=0.627  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            56899999999999999999999764

>PLN03130 ABC transporter C family member; Provisional

Probab=96.90  E-value=0.0013  Score=73.43  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..|+|+|+||+|||||++.|.+.++             |..|+  +||+|..-++.+.+.+.+   .++.++..|+..
T Consensus      1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130       1264 PSEKVGIVGRTGAGKSSMLNALFRIVE-------------LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence            568999999999999999999998754             33443  588888777777777643   577777777777


Q ss_pred             Cce-ec--CCHHHHHHHHH
Q psy14166        184 GHL-YG--TSSDSVLELVN  199 (264)
Q Consensus       184 g~~-YG--t~~~si~~vl~  199 (264)
                      .|+ ++  .+.+.+.++++
T Consensus      1331 eNLd~~~~~tdeei~~Al~ 1349 (1622)
T PLN03130       1331 FNLDPFNEHNDADLWESLE 1349 (1622)
T ss_pred             HHhCcCCCCCHHHHHHHHH
Confidence            663 32  24455665555

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.90  E-value=0.00089  Score=59.03  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.89  E-value=0.00084  Score=60.70  Aligned_cols=27  Identities=33%  Similarity=0.394  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            468999999999999999999998764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.89  E-value=0.00082  Score=59.28  Aligned_cols=26  Identities=23%  Similarity=0.472  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999873

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.0009  Score=59.73  Aligned_cols=27  Identities=37%  Similarity=0.583  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            469999999999999999999998754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.89  E-value=0.00084  Score=60.50  Aligned_cols=27  Identities=33%  Similarity=0.436  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            568999999999999999999998865

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.89  E-value=0.0009  Score=58.92  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998865

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00089  Score=60.63  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998854

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.88  E-value=0.00097  Score=59.72  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            569999999999999999999998864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.88  E-value=0.00095  Score=58.19  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|+|||||++.|+...+.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   63 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLHV   63 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999998653

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.88  E-value=0.00061  Score=66.04  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLI  171 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i  171 (264)
                      +--|+|+|-++||||||.|+|+.... ....+++-|||.+-..  |.+|..|.++|.+-+.+..
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~  240 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKG  240 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCccc
Confidence            46799999999999999999998864 3556788999998654  4569999999988887653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.88  E-value=0.001  Score=57.43  Aligned_cols=28  Identities=32%  Similarity=0.604  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+|++|+|||||++.|+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   52 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSPP   52 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999988653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.88  E-value=0.00096  Score=58.67  Aligned_cols=28  Identities=32%  Similarity=0.547  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~   53 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFYDV   53 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            5689999999999999999999988653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.88  E-value=0.00095  Score=57.29  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.88  E-value=0.0011  Score=55.89  Aligned_cols=27  Identities=37%  Similarity=0.598  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            468999999999999999999998865

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.88  E-value=0.001  Score=57.81  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   50 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIEP   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5699999999999999999999998653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.88  E-value=0.001  Score=57.98  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            468999999999999999999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.88  E-value=0.00084  Score=57.71  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|.|.||||||||||++.|.....
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.87  E-value=0.001  Score=57.51  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            568999999999999999999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.87  E-value=0.001  Score=60.14  Aligned_cols=28  Identities=25%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            5699999999999999999999998753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.87  E-value=0.00096  Score=60.26  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998864

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.87  E-value=0.00097  Score=59.75  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46899999999999999999999875

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.87  E-value=0.001  Score=58.19  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   52 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILRP   52 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999998653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.86  E-value=0.00099  Score=58.51  Aligned_cols=27  Identities=33%  Similarity=0.651  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.86  E-value=0.00099  Score=59.67  Aligned_cols=26  Identities=38%  Similarity=0.627  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            46899999999999999999999875

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.86  E-value=0.001  Score=58.87  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.86  E-value=0.00097  Score=60.71  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.86  E-value=0.001  Score=60.42  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998854

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.86  E-value=0.00099  Score=60.03  Aligned_cols=28  Identities=39%  Similarity=0.576  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   63 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLGLEKP   63 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999998643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.86  E-value=0.00098  Score=60.25  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.85  E-value=0.001  Score=59.55  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~   57 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLEKP   57 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999998653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=96.85  E-value=0.0011  Score=59.94  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p   65 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAGMIEP   65 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999998653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.85  E-value=0.001  Score=59.13  Aligned_cols=27  Identities=30%  Similarity=0.591  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            468999999999999999999997653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.84  E-value=0.001  Score=60.16  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   61 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLLKP   61 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999998653

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.84  E-value=0.0018  Score=54.60  Aligned_cols=60  Identities=17%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC-CCCCCcceeecCHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP-GEEDGKEYHFVSHETMTSLI  171 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~-gE~~G~dY~fvs~~~f~~~i  171 (264)
                      +.+++||.|.||+|||||++.|....   |....-.-++-... .-..|...-+.|...|.+.+
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~G---fatvee~~r~ii~~es~~gg~~lPW~D~~afael~   68 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARAG---FATVEEAGRDIIALESAQGGTALPWTDPGAFAELV   68 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHcC---ceeeccchhhHHHHHHhcCCCcCCccChHHHHHHH
Confidence            45799999999999999999999763   33221111111110 01234566667877777654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.84  E-value=0.0011  Score=57.99  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   66 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENFYQP   66 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            5689999999999999999999988653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.84  E-value=0.0011  Score=61.14  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.84  E-value=0.0011  Score=57.76  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998854

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.84  E-value=0.0015  Score=56.63  Aligned_cols=26  Identities=42%  Similarity=0.664  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++..+.|+||||+|||||+-.|+..+
T Consensus        35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd   60 (228)
T COG4181          35 RGETVAIVGPSGSGKSTLLAVLAGLD   60 (228)
T ss_pred             CCceEEEEcCCCCcHHhHHHHHhcCC
Confidence            56899999999999999999999875

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.84  E-value=0.0011  Score=57.14  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            568999999999999999999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.83  E-value=0.001  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|.||+|+|||++++.|++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.83  E-value=0.0011  Score=58.38  Aligned_cols=27  Identities=37%  Similarity=0.550  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.83  E-value=0.0011  Score=59.80  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            469999999999999999999998753

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.82  E-value=0.0011  Score=60.10  Aligned_cols=27  Identities=37%  Similarity=0.609  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            568999999999999999999998753

>PRK12338 hypothetical protein; Provisional

Probab=96.82  E-value=0.0026  Score=59.57  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+|+|.|+||+||||++..|+...+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~   29 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLN   29 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence            46899999999999999999998864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.82  E-value=0.0011  Score=59.60  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999999999875

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.0016  Score=57.44  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=28.2

Q ss_pred             cchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166         95 PTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus        95 ~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|.|..-. .  .+..+|++||||||||||+|.++..-
T Consensus        19 ~~le~vsL~i-a--~ge~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          19 SALEDVSLTI-A--SGELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             hhhhccceee-c--CCCEEEEEcCCCccHHHHHHHHhcCc
Confidence            3455555322 2  46899999999999999999999864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.82  E-value=0.0014  Score=57.48  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++..+.|+||||+|||||++.|....
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhh
Confidence            56899999999999999999988763

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.82  E-value=0.0011  Score=58.57  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.82  E-value=0.001  Score=58.65  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            568999999999999999999998764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.81  E-value=0.0014  Score=56.29  Aligned_cols=54  Identities=19%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCcccc--ccccCCCCCC--CCCCCcceeecCHHHH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQV--TPYTTRPKKP--GEEDGKEYHFVSHETM  167 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~--v~~TTR~~r~--gE~~G~dY~fvs~~~f  167 (264)
                      .|+|+|.+|||||||.|.|+....  |...  .+.+|+....  .+.+|..+.++|...|
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~--~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~   59 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREV--FESKLSASSVTKTCQKESAVWDGRRVNVIDTPGL   59 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCc--cccccCCCCcccccceeeEEECCeEEEEEECcCC
Confidence            589999999999999999997643  2111  2234444322  2345666666665443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.0012  Score=59.64  Aligned_cols=27  Identities=37%  Similarity=0.582  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            568999999999999999999998763

>PTZ00301 uridine kinase; Provisional

Probab=96.81  E-value=0.00099  Score=58.73  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+|.|.||||||||||++.|++.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~   26 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSE   26 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHH
Confidence            58999999999999999988654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.81  E-value=0.0011  Score=59.47  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         27 PGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999999854

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.81  E-value=0.0011  Score=51.37  Aligned_cols=23  Identities=43%  Similarity=0.716  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      |+++|++|||||||++.|+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.0012  Score=58.86  Aligned_cols=27  Identities=41%  Similarity=0.655  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         29 ERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            468999999999999999999999865

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.0011  Score=59.67  Aligned_cols=28  Identities=36%  Similarity=0.479  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   59 (265)
T PRK10253         32 DGHFTAIIGPNGCGKSTLLRTLSRLMTP   59 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            4689999999999999999999998653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.80  E-value=0.0011  Score=60.98  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   55 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMIS   55 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.80  E-value=0.0011  Score=63.03  Aligned_cols=28  Identities=32%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|....+.
T Consensus        18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p   45 (363)
T TIGR01186        18 KGEIFVIMGLSGSGKSTTVRMLNRLIEP   45 (363)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence            5699999999999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.0012  Score=58.82  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            46899999999999999999999875

>PRK15453 phosphoribulokinase; Provisional

Probab=96.80  E-value=0.002  Score=59.40  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|+|.|.|||||||+++.|...+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if   29 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIF   29 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.0012  Score=58.62  Aligned_cols=27  Identities=44%  Similarity=0.679  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            468999999999999999999998754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.80  E-value=0.0012  Score=59.33  Aligned_cols=27  Identities=44%  Similarity=0.605  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         29 HGEMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998864

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=96.80  E-value=0.0011  Score=57.26  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~   24 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE   24 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999987

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=96.79  E-value=0.0012  Score=62.54  Aligned_cols=28  Identities=39%  Similarity=0.572  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p   56 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLERI   56 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            4689999999999999999999998653

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.79  E-value=0.002  Score=58.82  Aligned_cols=27  Identities=33%  Similarity=0.572  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.++.|+|.||||||||.+.|+...+
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~   64 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEE   64 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence            579999999999999999999998865

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.79  E-value=0.0012  Score=58.99  Aligned_cols=27  Identities=30%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|....+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.78  E-value=0.0013  Score=59.10  Aligned_cols=27  Identities=33%  Similarity=0.619  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.78  E-value=0.0013  Score=58.55  Aligned_cols=27  Identities=37%  Similarity=0.591  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|++|+|||||++.|+...+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            468999999999999999999998763

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.77  E-value=0.0013  Score=58.55  Aligned_cols=26  Identities=38%  Similarity=0.638  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999999999864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=96.77  E-value=0.0012  Score=61.07  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++..++|+||+|+|||||++.|....+.
T Consensus        32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p   59 (305)
T PRK13651         32 QGEFIAIIGQTGSGKTTFIEHLNALLLP   59 (305)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5689999999999999999999998654

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.77  E-value=0.0013  Score=59.81  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            569999999999999999999998764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.76  E-value=0.0013  Score=60.13  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .|.+++|+||+|+|||||++.|+...+.
T Consensus        32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13641         32 EGSFVALVGHTGSGKSTLMQHFNALLKP   59 (287)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5699999999999999999999988653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.0013  Score=59.29  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            56899999999999999999999853

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.76  E-value=0.0013  Score=62.33  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p   58 (351)
T PRK11432         31 QGTMVTLLGPSGCGKTTVLRLVAGLEKP   58 (351)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            4689999999999999999999998654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.76  E-value=0.0014  Score=57.81  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4699999999999999999999998654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.0013  Score=58.91  Aligned_cols=27  Identities=37%  Similarity=0.568  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         37 KNSVTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0014  Score=59.39  Aligned_cols=27  Identities=33%  Similarity=0.562  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.++.|+||+|+|||||++.++...+
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            568999999999999999999999544

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.76  E-value=0.0013  Score=57.22  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=23.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+++|+||+|+|||||++.|+...+
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            7999999999999999999998864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.75  E-value=0.0013  Score=61.79  Aligned_cols=27  Identities=33%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~   56 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLLER   56 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.75  E-value=0.0012  Score=59.10  Aligned_cols=37  Identities=14%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|.++...+++  .+.+++|+||+|+|||||++.|.-..
T Consensus        13 ~~~~~~~~~~~--~~~~~~IvG~NGsGKStll~Ai~~ll   49 (251)
T cd03273          13 SYATRTVISGF--DPQFNAITGLNGSGKSNILDAICFVL   49 (251)
T ss_pred             ccCcCEeeccC--CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45554433333  23799999999999999999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.75  E-value=0.0012  Score=58.62  Aligned_cols=25  Identities=40%  Similarity=0.612  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4689999999999999999999876

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.75  E-value=0.0014  Score=58.42  Aligned_cols=26  Identities=38%  Similarity=0.603  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999999998864

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=96.75  E-value=0.0014  Score=63.11  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|....+
T Consensus        28 ~Geiv~liGpNGaGKSTLLk~LaGll~   54 (402)
T PRK09536         28 EGSLVGLVGPNGAGKTTLLRAINGTLT   54 (402)
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            569999999999999999999998754

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.75  E-value=0.0013  Score=62.84  Aligned_cols=28  Identities=25%  Similarity=0.521  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p   66 (375)
T PRK09452         39 NGEFLTLLGPSGCGKTTVLRLIAGFETP   66 (375)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5689999999999999999999998653

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.75  E-value=0.017  Score=53.68  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-+|+|.|+|||||||++..|+..++
T Consensus        92 p~iIlI~G~sgsGKStlA~~La~~l~  117 (301)
T PRK04220         92 PIIILIGGASGVGTSTIAFELASRLG  117 (301)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788899999999999999998864

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.0064  Score=54.00  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++|+|.|++||||||+++.|++...+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHH
Confidence            58999999999999999999987543

>KOG3079|consensus

Probab=96.74  E-value=0.0072  Score=52.46  Aligned_cols=121  Identities=16%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-ccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV-TPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL  186 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~  186 (264)
                      ..+.+|.++|++||||-|...++++.++  |... .-.--|.....  .|-+|.    ..+...+.+|..+-..      
T Consensus         6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~--~gse~g----~~I~~~i~~G~iVP~e------   71 (195)
T KOG3079|consen    6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIAS--AGSERG----ALIKEIIKNGDLVPVE------   71 (195)
T ss_pred             cCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHcc--ccChHH----HHHHHHHHcCCcCcHH------
Confidence            3567999999999999999999999986  4322 11111221111  133333    2455666777775432      


Q ss_pred             ecCCHHHHHHHHHcCC---eEEEEcCHHHHHHHhc--CC---CCcEEEEEeCCChHHHHHHHHhhc
Q psy14166        187 YGTSSDSVLELVNSGR---VAVLNPAYQSLKVLRS--PA---FKPLVLFIAPPPFAALKESRITAF  244 (264)
Q Consensus       187 YGt~~~si~~vl~~Gk---i~vld~~~~~~~~Lr~--~~---~~p~vIfI~pps~e~l~~~r~~~~  244 (264)
                        +..+-+++.+.+-.   .-|+|+-|...+++..  ..   ..-+++|+++|-...|++...+..
T Consensus        72 --i~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q  135 (195)
T KOG3079|consen   72 --ITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQ  135 (195)
T ss_pred             --HHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcc
Confidence              12233333333221   1688888876666552  11   235799999996666665444433

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.74  E-value=0.0014  Score=58.59  Aligned_cols=27  Identities=33%  Similarity=0.520  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         27 TGKITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.74  E-value=0.0015  Score=58.27  Aligned_cols=26  Identities=38%  Similarity=0.617  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            46899999999999999999999874

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=96.74  E-value=0.0014  Score=61.36  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|+||+|||||++.|+...+
T Consensus        32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         32 EGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            568999999999999999999998864

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.74  E-value=0.0014  Score=55.26  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...-|+|+|++|+|||||+++|...
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            5578999999999999999999875

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=96.74  E-value=0.0014  Score=62.12  Aligned_cols=28  Identities=36%  Similarity=0.622  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p   54 (353)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLEHQ   54 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999998653

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.73  E-value=0.0016  Score=50.85  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.++|+||+|+|||+|++.++...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.73  E-value=0.0016  Score=55.28  Aligned_cols=121  Identities=21%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCCCcceeecCHHHHHHHHH--cCCccee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEEDGKEYHFVSHETMTSLIS--AGKMIEF  179 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~G~dY~fvs~~~f~~~i~--~~~flE~  179 (264)
                      ++.++.|+||||+|||||..-++......|...-.       .++-|.   ...-....|.|.-.|...--  +-.|.--
T Consensus        27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa---~qRq~GiLFQD~lLFphlsVg~Nl~fAlp  103 (213)
T COG4136          27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA---AQRQIGILFQDALLFPHLSVGQNLLFALP  103 (213)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch---hhhheeeeecccccccccccccceEEecC
Confidence            56899999999999999999888875544533210       011111   01113344555555544321  1122222


Q ss_pred             eeecCceecCCHHHHHHHHH-cCCeEEEEcCHHH--------HHHHhcCCCCcEEEEEeCCChHHH
Q psy14166        180 GEYKGHLYGTSSDSVLELVN-SGRVAVLNPAYQS--------LKVLRSPAFKPLVLFIAPPPFAAL  236 (264)
Q Consensus       180 ~~~~g~~YGt~~~si~~vl~-~Gki~vld~~~~~--------~~~Lr~~~~~p~vIfI~pps~e~l  236 (264)
                      .+.+|+..   ...+..+++ .|-.-.++-+|+.        +-.+|..-..|..+.++.| +..|
T Consensus       104 ~~~KG~aR---r~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP-FS~L  165 (213)
T COG4136         104 ATLKGNAR---RNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP-FSRL  165 (213)
T ss_pred             cccccHHH---HhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc-hhHH
Confidence            33445411   222333333 4555566777752        2233333457999999998 3344

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.73  E-value=0.0015  Score=58.15  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (252)
T PRK14272         29 RGTVNALIGPSGCGKTTFLRAINRMHD   55 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998753

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=96.73  E-value=0.0014  Score=62.43  Aligned_cols=27  Identities=41%  Similarity=0.649  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||+|||||++.|+...+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~   54 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLED   54 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            468999999999999999999998854

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.0014  Score=59.82  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|....+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p   59 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALLKP   59 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999988653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.0014  Score=59.69  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .|.+++|+||+|+|||||++.|+...+.
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p   59 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLLP   59 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5689999999999999999999988653

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.72  E-value=0.0014  Score=59.46  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~   54 (275)
T PRK13639         27 KGEMVALLGPNGAGKSTLFLHFNGILKP   54 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999987653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=96.72  E-value=0.0014  Score=61.87  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999999864

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=96.72  E-value=0.0015  Score=53.50  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHE  165 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~  165 (264)
                      +.|+|+|.+|||||||+++|......  ....+.+|..+..+.  .++..+.++|..
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~   55 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTP   55 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECC
Confidence            46899999999999999999976431  122345555543322  234455555543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.72  E-value=0.0014  Score=62.02  Aligned_cols=28  Identities=36%  Similarity=0.605  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p   56 (353)
T TIGR03265        29 KGEFVCLLGPSGCGKTTLLRIIAGLERQ   56 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            4689999999999999999999998653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=96.72  E-value=0.0014  Score=58.64  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...|.
T Consensus        21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~   48 (248)
T PRK03695         21 AGEILHLVGPNGAGKSTLLARMAGLLPG   48 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            5689999999999999999999987653

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.72  E-value=0.0013  Score=64.70  Aligned_cols=50  Identities=28%  Similarity=0.438  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS  169 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~  169 (264)
                      .+..+.|+||||+|||||++.|....+. .+..|          ..||-++.--|++.|-+
T Consensus       361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~V----------RLDga~l~qWd~e~lG~  410 (580)
T COG4618         361 AGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSV----------RLDGADLRQWDREQLGR  410 (580)
T ss_pred             CCceEEEECCCCccHHHHHHHHHccccc-CCCcE----------EecchhhhcCCHHHhcc
Confidence            4678999999999999999999988764 12222          34666655556665544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=96.72  E-value=0.0014  Score=59.20  Aligned_cols=27  Identities=41%  Similarity=0.672  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         37 SGETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.72  E-value=0.0015  Score=58.34  Aligned_cols=26  Identities=42%  Similarity=0.662  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999999999753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.72  E-value=0.0018  Score=54.54  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...-|+|+|.+|||||||++.|...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4467999999999999999999975

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=96.71  E-value=0.0012  Score=63.31  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC---CcceeecCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED---GKEYHFVSH  164 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~---G~dY~fvs~  164 (264)
                      -|+|+|.++||||||+|.|....|.  ....|.|||.|..+-+.   +..+.|+|-
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~--vs~~p~TT~~p~~Giv~~~~~~~i~~vDt  214 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPK--VADYPFTTLVPNLGVVRVDDERSFVVADI  214 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCccc--ccCCCCCccCcEEEEEEeCCCcEEEEEeC
Confidence            4899999999999999999987652  24457899998766432   233555543

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.71  E-value=0.0015  Score=59.64  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~   58 (282)
T PRK13640         32 RGSWTALIGHNGSGKSTISKLINGLLL   58 (282)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            468999999999999999999999864

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.71  E-value=0.0014  Score=61.80  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||+|||||++.|+...+
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~   49 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLTR   49 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998854

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.71  E-value=0.0016  Score=58.08  Aligned_cols=26  Identities=35%  Similarity=0.612  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+++|+||+|+|||||++.|+...
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46899999999999999999999875

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.71  E-value=0.0015  Score=56.18  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|+||+|+|||||++.|+...
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999876

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.71  E-value=0.0016  Score=58.50  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|++|+|||||++.|+...+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         32 RNKVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            468999999999999999999998754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=96.71  E-value=0.0016  Score=56.87  Aligned_cols=27  Identities=33%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~G~~~~I~G~nGsGKStLl~~l~G~~~   56 (220)
T TIGR02982        30 PGEIVILTGPSGSGKTTLLTLIGGLRS   56 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998765

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.71  E-value=0.0014  Score=58.54  Aligned_cols=27  Identities=33%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            469999999999999999999998765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0014  Score=58.84  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+.+|+||+|+|||||++.|+..
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~   53 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGH   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999975

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.70  E-value=0.0024  Score=56.33  Aligned_cols=41  Identities=17%  Similarity=0.075  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP  151 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~  151 (264)
                      .+..|+|=|.-||||||+++.|.+...... . -..+||.|..
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g-~-~v~~trEP~~   42 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERG-I-KVVLTREPGG   42 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEeCCCC
Confidence            358999999999999999999998765421 1 2346888864

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=96.70  E-value=0.0011  Score=59.24  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc---cccC-CCCCCCCCCCcceeecCHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT---PYTT-RPKKPGEEDGKEYHFVSHETMTSL  170 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v---~~TT-R~~r~gE~~G~dY~fvs~~~f~~~  170 (264)
                      .+.+++|+|++|+|||||++.|+...+..=+.+.   ...| .+|..--..|..|....+.-|..+
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L   93 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL   93 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence            5799999999999999999999998764322221   1223 333222245677766666666554

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=96.70  E-value=0.0015  Score=61.10  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|+||||||||++.|+...+
T Consensus        32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         32 QGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            569999999999999999999998764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.69  E-value=0.0016  Score=57.61  Aligned_cols=28  Identities=39%  Similarity=0.612  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~   52 (237)
T TIGR00968        25 TGSLVALLGPSGSGKSTLLRIIAGLEQP   52 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999987653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.69  E-value=0.0016  Score=59.31  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGLLE   58 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            469999999999999999999998754

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.69  E-value=0.0012  Score=52.54  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+|+|++|||||||+++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0016  Score=58.91  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+|++|+|||||++.|++..
T Consensus        49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         49 ENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            56899999999999999999999875

>PRK00089 era GTPase Era; Reviewed

Probab=96.68  E-value=0.0011  Score=60.32  Aligned_cols=52  Identities=29%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCC--CCcceeecC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEE--DGKEYHFVS  163 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~--~G~dY~fvs  163 (264)
                      -.|+|+|++|||||||+|.|+..... .....+.|||..-.+-.  ++..+.|+|
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iD   59 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVD   59 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEE
Confidence            57999999999999999999876321 22345677776532211  224455554

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.68  E-value=0.0017  Score=59.49  Aligned_cols=27  Identities=37%  Similarity=0.357  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|....+
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            569999999999999999999998864

>cd01898 Obg Obg subfamily

Probab=96.68  E-value=0.0018  Score=53.03  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      |+|+|.+|||||||++.|....+.  ....+.+|+.+..+
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~~~~   40 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVPNLG   40 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCCcc--ccCCCccccCCcce
Confidence            799999999999999999865431  11234566665433

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=96.68  E-value=0.0018  Score=53.47  Aligned_cols=24  Identities=13%  Similarity=0.439  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...|+|+|++|||||||++.|...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            456999999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.67  E-value=0.0013  Score=52.94  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy14166        113 VVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~  132 (264)
                      |+|+|++|+|||||++.|..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            78999999999999999994

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.67  E-value=0.0013  Score=58.23  Aligned_cols=23  Identities=35%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|.|.||||||||||++.|....
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.67  E-value=0.0015  Score=54.49  Aligned_cols=24  Identities=38%  Similarity=0.740  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|.|+||+|||||||++.|.+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            578999999999999999998764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.67  E-value=0.0017  Score=58.88  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p   76 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSLSP   76 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            4689999999999999999999998653

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.67  E-value=0.0015  Score=52.27  Aligned_cols=24  Identities=38%  Similarity=0.548  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|+|||||.+.|....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~   25 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRD   25 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCc
Confidence            468999999999999999998653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.67  E-value=0.0017  Score=59.03  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|.+++|+|++|+|||||++.|+...+
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~   55 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGILK   55 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            569999999999999999999998854

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.66  E-value=0.0017  Score=58.40  Aligned_cols=27  Identities=30%  Similarity=0.567  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|++|+|||||++.|+...+
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   58 (261)
T PRK14258         32 QSKVTAIIGPSGCGKSTFLKCLNRMNE   58 (261)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence            569999999999999999999999865

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.66  E-value=0.0016  Score=56.20  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999987

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.66  E-value=0.0018  Score=57.62  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45899999999999999999999874

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=96.66  E-value=0.0017  Score=60.78  Aligned_cols=28  Identities=29%  Similarity=0.553  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+|+||+|||||++.|+...+.
T Consensus        40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p   67 (327)
T PRK11308         40 RGKTLAVVGESGCGKSTLARLLTMIETP   67 (327)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence            5689999999999999999999998653

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.66  E-value=0.0017  Score=52.38  Aligned_cols=24  Identities=50%  Similarity=0.895  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+|+|||+|++.|+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.65  E-value=0.0018  Score=58.88  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (274)
T PRK13644         27 KGEYIGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998864

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=96.65  E-value=0.0017  Score=59.07  Aligned_cols=28  Identities=25%  Similarity=0.391  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|....+.
T Consensus        35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   62 (280)
T PRK13633         35 KGEFLVILGRNGSGKSTIAKHMNALLIP   62 (280)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.64  E-value=0.0013  Score=53.98  Aligned_cols=51  Identities=25%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             EEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CC-CcceeecCHHHH
Q psy14166        115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--ED-GKEYHFVSHETM  167 (264)
Q Consensus       115 LiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~-G~dY~fvs~~~f  167 (264)
                      |+|++|||||||+++|.....  .....+.||+.+..+.  .+ +..+.++|...+
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~   54 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGL   54 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEecccc
Confidence            689999999999999997642  1223345666654432  33 555556654433

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=96.64  E-value=0.0018  Score=58.38  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         35 KNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            46999999999999999999999763

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.63  E-value=0.0018  Score=57.72  Aligned_cols=25  Identities=36%  Similarity=0.608  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhh
Confidence            4689999999999999999999864

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.63  E-value=0.0018  Score=58.85  Aligned_cols=27  Identities=30%  Similarity=0.592  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         46 ARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=96.63  E-value=0.0016  Score=57.71  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            56899999999999999999999873

>KOG1969|consensus

Probab=96.62  E-value=0.012  Score=60.38  Aligned_cols=124  Identities=20%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-c----------------------c---ccCCCCC--CCCCCCccee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV-T----------------------P---YTTRPKK--PGEEDGKEYH  160 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-v----------------------~---~TTR~~r--~gE~~G~dY~  160 (264)
                      ..+++.|+||+|.|||||+..++..-.  |... |                      +   ..+||..  -.|+||-.-.
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~  402 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA  402 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence            348999999999999999998887531  2211 0                      0   1144443  2467776544


Q ss_pred             ecCHHHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcC---CeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHH
Q psy14166        161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSG---RVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK  237 (264)
Q Consensus       161 fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~G---ki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~  237 (264)
                      +|+  .+..++.+..-.++|.-.++- +.     +.--..+   +.+|..|+-.....||.......+|++.||+...|-
T Consensus       403 ~Vd--vilslv~a~~k~~~Gkq~~~~-~~-----rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv  474 (877)
T KOG1969|consen  403 AVD--VILSLVKATNKQATGKQAKKD-KK-----RKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLV  474 (877)
T ss_pred             HHH--HHHHHHHhhcchhhcCcccch-hh-----hhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHH
Confidence            443  355555444333333322221 11     1111111   234555665555555544445668888888888877


Q ss_pred             HHHHh
Q psy14166        238 ESRIT  242 (264)
Q Consensus       238 ~~r~~  242 (264)
                      ++.+.
T Consensus       475 ~RL~~  479 (877)
T KOG1969|consen  475 ERLNE  479 (877)
T ss_pred             HHHHH
Confidence            65444

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=96.62  E-value=0.0019  Score=59.19  Aligned_cols=28  Identities=14%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|+...+.
T Consensus        62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p   89 (282)
T cd03291          62 KGEMLAITGSTGSGKTSLLMLILGELEP   89 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999987653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.62  E-value=0.0016  Score=57.92  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+|++|+|||||++.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999999999999985

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.62  E-value=0.0018  Score=59.25  Aligned_cols=28  Identities=32%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|+|||||++.|....+.
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p   58 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGLLQP   58 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            5689999999999999999999988643

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.62  E-value=0.0019  Score=59.09  Aligned_cols=27  Identities=30%  Similarity=0.551  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   90 (285)
T PRK14254         64 ENQVTAMIGPSGCGKSTFLRCINRMND   90 (285)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            568999999999999999999998753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.61  E-value=0.0019  Score=60.30  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+|++|+|||||++.|....+.
T Consensus        51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p   78 (320)
T PRK13631         51 KNKIYFIIGNSGSGKSTLVTHFNGLIKS   78 (320)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>COG1159 Era GTPase [General function prediction only]

Probab=96.61  E-value=0.0012  Score=60.86  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCC--cceeecCH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDG--KEYHFVSH  164 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G--~dY~fvs~  164 (264)
                      -.|+|+|.++||||||+|.|++..-. .....+-|||..-.|-...  ....|+|.
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDT   61 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDT   61 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceE-eecCCcchhhhheeEEEEcCCceEEEEeC
Confidence            47999999999999999999987532 2344567999876554222  23345553

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.61  E-value=0.0017  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|++||||||+++.|+...
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.60  E-value=0.002  Score=59.47  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+....
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998753

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.60  E-value=0.005  Score=55.42  Aligned_cols=106  Identities=16%  Similarity=0.254  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCC-ccccccccCCCCCCCCCCCcceeec-CHHHHHHHH-----HcCCcceeee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDK-FTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTSLI-----SAGKMIEFGE  181 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~-f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~f~~~i-----~~~~flE~~~  181 (264)
                      .+..|+|+|++||||||+++.|+...|.. ....+--.+..-.....+...+... ....|...+     .+.+.+-.+|
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE  205 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE  205 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence            35899999999999999999999987654 2222111122111111111111111 122333332     2456777777


Q ss_pred             ecCceecCCHHHHHHHHHcCCeE-EEEcCH----HHHHHHhc
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVA-VLNPAY----QSLKVLRS  218 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~-vld~~~----~~~~~Lr~  218 (264)
                      ..+.   ..... .++++.|..+ +..++.    +++.+|..
T Consensus       206 iR~~---e~~~~-~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~  243 (270)
T PF00437_consen  206 IRDP---EAAEA-IQAANTGHLGSLTTLHANSAEDAIERLAD  243 (270)
T ss_dssp             E-SC---HHHHH-HHHHHTT-EEEEEEEE-SSHHHHHHHHHH
T ss_pred             cCCH---hHHHH-HHhhccCCceeeeeeecCCHHHHHHHHHH
Confidence            6653   22333 5677788877 666664    34555543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK13976 thymidylate kinase; Provisional

Probab=96.60  E-value=0.0011  Score=58.26  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      .+|+|-|.-||||||+++.|.+......+..-.++||.|.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~   40 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG   40 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence            3789999999999999999998764322212234677764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.60  E-value=0.002  Score=61.25  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p   57 (362)
T TIGR03258        30 AGELLALIGKSGCGKTTLLRAIAGFVKA   57 (362)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988643

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.60  E-value=0.002  Score=58.53  Aligned_cols=26  Identities=35%  Similarity=0.682  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         45 AKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999999999764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=96.59  E-value=0.0019  Score=61.69  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|+...+.
T Consensus        44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p   71 (377)
T PRK11607         44 KGEIFALLGASGCGKSTLLRMLAGFEQP   71 (377)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4689999999999999999999988643

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=96.59  E-value=0.0018  Score=57.65  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVS  163 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs  163 (264)
                      .++|+|++|||||||++.|....+.  ....+.||..+..|.  .+|..+.++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~~~~~i~l~D   53 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEYKGAKIQLLD   53 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEECCeEEEEEE
Confidence            4789999999999999999987542  223456776665542  3454444443

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.59  E-value=0.021  Score=55.70  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..+++|.||+|+|||+|++.+...
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~  153 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Confidence            468999999999999999988765

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.59  E-value=0.0079  Score=56.66  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=28.7

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+-+...++.......|.|+|++|||||||++.|+...
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344444445443456799999999999999999987654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=96.59  E-value=0.0021  Score=58.16  Aligned_cols=27  Identities=37%  Similarity=0.604  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||+|+|||||++.|+...+
T Consensus        50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         50 KNRVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            569999999999999999999998754

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.59  E-value=0.0023  Score=52.88  Aligned_cols=27  Identities=37%  Similarity=0.571  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+|++|+|||||++.|....+
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            458999999999999999999988754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.58  E-value=0.0021  Score=60.71  Aligned_cols=27  Identities=33%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||+|||||++.|....+
T Consensus        30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~   56 (343)
T TIGR02314        30 AGQIYGVIGASGAGKSTLIRCVNLLER   56 (343)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=96.57  E-value=0.0019  Score=60.50  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|+||+|||||++.|+...+
T Consensus        41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         41 AGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            569999999999999999999998865

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.57  E-value=0.0021  Score=57.78  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+|++|+|||||++.|+...
T Consensus        41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         41 EKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccc
Confidence            56899999999999999999999864

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=96.57  E-value=0.0022  Score=57.53  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+|++|+|||||++.|+...+
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (257)
T cd03288          46 PGQKVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcccC
Confidence            468999999999999999999998865

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PLN02459 probable adenylate kinase

Probab=96.57  E-value=0.0081  Score=54.78  Aligned_cols=111  Identities=16%  Similarity=0.129  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC-CcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED-GKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~-G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      ..|+|+||+||||+|++..|++.+.- -+...-..-|.    |+. +-+.    -..+...+.+|.++.-.        +
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~-~~is~gdllR~----ei~~~t~l----g~~i~~~~~~G~lVPde--------i   92 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGV-PHIATGDLVRE----EIKSSGPL----GAQLKEIVNQGKLVPDE--------I   92 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC-cEEeCcHHHHH----HHhccchh----HHHHHHHHHcCCccCHH--------H
Confidence            35888999999999999999987531 11111111111    100 0000    12344455566654321        1


Q ss_pred             CHHHHHHHHHc-----CCeEEEEcCHHHHHHHhcC--CCC-cEEEEEeCCChHHHHHH
Q psy14166        190 SSDSVLELVNS-----GRVAVLNPAYQSLKVLRSP--AFK-PLVLFIAPPPFAALKES  239 (264)
Q Consensus       190 ~~~si~~vl~~-----Gki~vld~~~~~~~~Lr~~--~~~-p~vIfI~pps~e~l~~~  239 (264)
                      ...-+.+.+.+     .+-.|||+-|..+.+....  ... -.||++..|. +.|.++
T Consensus        93 v~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d-~~l~~R  149 (261)
T PLN02459         93 IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLRE-EVLVEK  149 (261)
T ss_pred             HHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCH-HHHHHH
Confidence            11223333332     2458999998655544421  112 4689999984 555543

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.57  E-value=0.0042  Score=56.91  Aligned_cols=127  Identities=18%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc---CCC----------Ccccccccc---CCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL---DPD----------KFTQVTPYT---TRPKKPGEEDGKEYHFVSHETMTSLIS  172 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~---~p~----------~f~~~v~~T---TR~~r~gE~~G~dY~fvs~~~f~~~i~  172 (264)
                      .+-+|.|.|+.||||||++..|...   .|+          .|+++-..-   ....+.|--+  .|-.----.|-..+.
T Consensus        81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe--SyD~~~ll~fl~~vK  158 (283)
T COG1072          81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE--SYDVAALLRFLSDVK  158 (283)
T ss_pred             CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc--cccHHHHHHHHHHHh
Confidence            3458899999999999999887654   222          222221110   1111222111  111111123444455


Q ss_pred             cCCc-ceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHH---HHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        173 AGKM-IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSL---KVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       173 ~~~f-lE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~---~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      +|.- +. .....|.-.........+..+-.|+|+.+..-..   ..+.-+.|.-+.|||++| .+.|+++
T Consensus       159 ~~~~~v~-aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~-~~~le~w  227 (283)
T COG1072         159 AGKPDVF-APVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDAD-EELLEER  227 (283)
T ss_pred             cCCCccc-cccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCC-HHHHHHH
Confidence            4332 32 2233333333333445677777888888775222   233346777899999997 5566654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.57  E-value=0.0034  Score=58.82  Aligned_cols=48  Identities=33%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTS  169 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~  169 (264)
                      .+.++||+|-||||||||++.|-....             |..|+  ++|.|..-++..+..+
T Consensus        53 ~GeIfViMGLSGSGKSTLvR~~NrLie-------------pt~G~ilv~g~di~~~~~~~Lr~  102 (386)
T COG4175          53 EGEIFVIMGLSGSGKSTLVRLLNRLIE-------------PTRGEILVDGKDIAKLSAAELRE  102 (386)
T ss_pred             CCeEEEEEecCCCCHHHHHHHHhccCC-------------CCCceEEECCcchhcCCHHHHHH
Confidence            579999999999999999988866543             33343  5677777777766544

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.56  E-value=0.0022  Score=60.39  Aligned_cols=27  Identities=26%  Similarity=0.565  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~   92 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGMTS   92 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            569999999999999999999999754

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.56  E-value=0.0022  Score=58.32  Aligned_cols=28  Identities=29%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +|.+++|+|++|+|||||++.|....+.
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (277)
T PRK13642         32 KGEWVSIIGQNGSGKSTTARLIDGLFEE   59 (277)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5699999999999999999999988653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.56  E-value=0.0022  Score=58.83  Aligned_cols=28  Identities=32%  Similarity=0.391  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|+|||||++.|....+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGLLQP   59 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5699999999999999999999987643

>COG0218 Predicted GTPase [General function prediction only]

Probab=96.55  E-value=0.00015  Score=63.41  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...=|+++|-|+||||||+|.|....
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k   48 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQK   48 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCc
Confidence            34679999999999999999999854

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0036  Score=62.00  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|..|+|+|+||||||||++.|.+.++
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~~~  389 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGAWD  389 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhccC
Confidence            568999999999999999999998753

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=96.54  E-value=0.0022  Score=60.12  Aligned_cols=28  Identities=29%  Similarity=0.472  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+|+||+|||||++.|+...+.
T Consensus        46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p   73 (331)
T PRK15079         46 EGETLGVVGESGCGKSTFARAIIGLVKA   73 (331)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            5699999999999999999999988653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.54  E-value=0.002  Score=62.08  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||+|||||++.|....+
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~   79 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRLIE   79 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            568999999999999999999998864

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.53  E-value=0.0023  Score=57.66  Aligned_cols=27  Identities=33%  Similarity=0.522  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+|++|+|||||++.|....+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (261)
T PRK14263         33 KNEITGFIGPSGCGKSTVLRSLNRMND   59 (261)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcccc
Confidence            468999999999999999999988753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.53  E-value=0.0021  Score=58.75  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         64 SKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5699999999999999999999985

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.53  E-value=0.0092  Score=51.22  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++++|-|||||||+++.+.+..
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHH
Confidence            789999999999999999887664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.53  E-value=0.0022  Score=61.50  Aligned_cols=28  Identities=39%  Similarity=0.526  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||+|||||++.|....+.
T Consensus        49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p   76 (382)
T TIGR03415        49 EGEICVLMGLSGSGKSSLLRAVNGLNPV   76 (382)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5699999999999999999999988653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.53  E-value=0.0023  Score=55.74  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +++++|+||+|+|||||++.|...
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHH
Confidence            489999999999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.52  E-value=0.0022  Score=55.01  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++++|+|+||||||||++.|+....
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh
Confidence            36899999999999999999997753

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.52  E-value=0.0024  Score=58.26  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|.+++|+||+|+|||||++.|+...+
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            569999999999999999999998864

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.51  E-value=0.0025  Score=58.98  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999998754

>cd04163 Era Era subfamily

Probab=96.51  E-value=0.0022  Score=51.28  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|+|||||++.|...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.50  E-value=0.0025  Score=57.37  Aligned_cols=27  Identities=33%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         35 NNSIFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998754

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.50  E-value=0.0023  Score=58.88  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~   53 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGYLP   53 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998854

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.49  E-value=0.0023  Score=60.82  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..++++|+||+|+|||||++.|+...
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999998764

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13975 thymidylate kinase; Provisional

Probab=96.49  E-value=0.0024  Score=54.34  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+|+|.|+.||||||+++.|.+...
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998864

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=96.49  E-value=0.0026  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||+|+|||||++.|....+
T Consensus        24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299          24 RGDYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999999998754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.48  E-value=0.0023  Score=62.55  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~   54 (490)
T PRK10938         28 AGDSWAFVGANGSGKSALARALAGELP   54 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.0022  Score=63.07  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|+...+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (506)
T PRK13549         30 AGEIVSLCGENGAGKSTLMKVLSGVYP   56 (506)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=96.48  E-value=0.0024  Score=63.22  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~   60 (529)
T PRK15134         34 AGETLALVGESGSGKSVTALSILRLLP   60 (529)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999999998865

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=96.48  E-value=0.0023  Score=62.84  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~   55 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGIYT   55 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998864

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=96.47  E-value=0.0018  Score=55.21  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..++|+|+||-.+|||||+|+|+..+.
T Consensus         7 F~K~VailG~ESsGKStLv~kLA~~fn   33 (187)
T COG3172           7 FVKTVAILGGESSGKSTLVNKLANIFN   33 (187)
T ss_pred             hheeeeeecCcccChHHHHHHHHHHhC
Confidence            348999999999999999999998754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.47  E-value=0.0023  Score=55.41  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|+|+||+||||||+++.|+...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            789999999999999999887754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=96.47  E-value=0.00097  Score=60.06  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.++.||||+|+|||||.|.+...++.
T Consensus        29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P   56 (250)
T COG0411          29 PGEIVGLIGPNGAGKTTLFNLITGFYKP   56 (250)
T ss_pred             CCeEEEEECCCCCCceeeeeeecccccC
Confidence            5689999999999999999999987653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.46  E-value=0.0027  Score=56.44  Aligned_cols=25  Identities=40%  Similarity=0.620  Sum_probs=23.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         28 KNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4689999999999999999999875

>CHL00181 cbbX CbbX; Provisional

Probab=96.46  E-value=0.011  Score=54.43  Aligned_cols=25  Identities=12%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+..++|.||+|+|||++++.|+..
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~   82 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADI   82 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999775

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.45  E-value=0.0023  Score=50.46  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+.++|.||+|+|||++++.++...
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            34789999999999999999999875

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.45  E-value=0.018  Score=52.31  Aligned_cols=104  Identities=12%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH---HHHHHH-----HcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE---TMTSLI-----SAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~---~f~~~i-----~~~~flE~~~  181 (264)
                      ..+|+|+||+|+||||+++.|+...++.-...+..  =.|.+....|.....+..+   .|...+     .+.+.+-.+|
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti--Edp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgE  157 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV--EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGE  157 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE--CCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEecc
Confidence            36899999999999999999887654310011110  0111111222211111110   122221     2456666666


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCH----HHHHHHhc
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY----QSLKVLRS  218 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~----~~~~~Lr~  218 (264)
                      ..+.   .....+.++...|+.++-.++.    .++.+|..
T Consensus       158 iR~~---e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~  195 (264)
T cd01129         158 IRDA---ETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLD  195 (264)
T ss_pred             CCCH---HHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHH
Confidence            5542   1223345667788887766664    45666654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.44  E-value=0.0024  Score=55.58  Aligned_cols=25  Identities=32%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +++|+|+||+||||||.+-+|+..+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            3689999999999999998888753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.43  E-value=0.006  Score=56.17  Aligned_cols=110  Identities=22%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHH--cCCc-ceeee--
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLIS--AGKM-IEFGE--  181 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~--~~~f-lE~~~--  181 (264)
                      ++.++.++||+|+||||++++|....-             |..|.  ++|.+- |-.++++.+.+.  -|.. --+|.  
T Consensus        49 ~G~ivgflGaNGAGKSTtLKmLTGll~-------------p~~G~v~V~G~~P-f~~~~~~~~~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          49 KGEIVGFLGANGAGKSTTLKMLTGLLL-------------PTSGKVRVNGKDP-FRRREEYLRSIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             CCcEEEEEcCCCCcchhhHHHHhCccc-------------cCCCeEEecCcCc-chhHHHHHHHHHHHhhhhheeeeech
Confidence            568999999999999999999987642             22332  445432 445666665541  1111 11222  


Q ss_pred             ------ecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhc-------------CCC-CcEEEEEeCCCh
Q psy14166        182 ------YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-------------PAF-KPLVLFIAPPPF  233 (264)
Q Consensus       182 ------~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~-------------~~~-~p~vIfI~pps~  233 (264)
                            .....|-.+.+..++-++ .-+-|||++...-..+|.             +-+ .|.|+|++.|..
T Consensus       115 ~~ds~~v~~~Iy~Ipd~~F~~r~~-~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv  185 (325)
T COG4586         115 ALDSLEVLKLIYEIPDDEFAERLD-FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV  185 (325)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHH-HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence                  223356666655554443 223467777543222221             112 689999999974

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.43  E-value=0.002  Score=58.14  Aligned_cols=58  Identities=16%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC--CCCCCcceeecCHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP--GEEDGKEYHFVSHETM  167 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~--gE~~G~dY~fvs~~~f  167 (264)
                      ..-.|+|+|.+|||||||+|.|.+..-... .....+|+....  ++.+|..+.++|...|
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl   89 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGL   89 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence            346899999999999999999998642111 112223332221  2345666677765444

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.43  E-value=0.0026  Score=62.90  Aligned_cols=27  Identities=26%  Similarity=0.197  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~   52 (530)
T PRK15064         26 GGNRYGLIGANGCGKSTFMKILGGDLE   52 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998764

>cd01894 EngA1 EngA1 subfamily

Probab=96.43  E-value=0.0015  Score=52.35  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=24.6

Q ss_pred             EEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166        114 VLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK  149 (264)
Q Consensus       114 vLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~  149 (264)
                      +|+|.+|||||||.++|...... +....+.||+..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~   35 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDR   35 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCc
Confidence            58999999999999999976421 223344556544

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.41  E-value=0.0089  Score=53.82  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...++|.||+|+||||+++.++..
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=96.41  E-value=0.0058  Score=59.86  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHET  166 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~  166 (264)
                      ...|+|+|.+|||||||+++|+..... +....+.||+.+...  +.+|..+.++|...
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG  268 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGGKTWRFVDTAG  268 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECCEEEEEEECCC
Confidence            468999999999999999999976421 234567788876433  34566676665443

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.40  E-value=0.0028  Score=55.91  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      +.+++|+||+|+|||||++.|.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            3699999999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.39  E-value=0.0028  Score=51.05  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999865

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.39  E-value=0.0028  Score=56.46  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|....
T Consensus        26 pGev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          26 PGEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             CCcEEEEECCCCccHHHHHHHhhCcc
Confidence            45999999999999999999999874

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=96.39  E-value=0.0096  Score=52.33  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|-|..||||||+++.|.+..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l   23 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKL   23 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999864

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.39  E-value=0.0031  Score=62.26  Aligned_cols=27  Identities=26%  Similarity=0.473  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~   62 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIVP   62 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998864

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.0032  Score=58.13  Aligned_cols=26  Identities=38%  Similarity=0.621  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         70 EKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            56899999999999999999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.0027  Score=62.48  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~   56 (510)
T PRK09700         30 PGEIHALLGENGAGKSTLMKVLSGIHE   56 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence            468999999999999999999998764

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.37  E-value=0.031  Score=53.54  Aligned_cols=38  Identities=13%  Similarity=0.193  Sum_probs=27.0

Q ss_pred             chHhhhhcCCCCC-CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166         96 TYEEVAKLYPMET-LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus        96 ~Yeev~~~~~~~~-~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .|.-+..+...+. ...+++|.||+|+|||+|++.+...
T Consensus       121 a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~  159 (405)
T TIGR00362       121 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE  159 (405)
T ss_pred             HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4544444333333 3468999999999999999988764

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK04213 GTP-binding protein; Provisional

Probab=96.37  E-value=0.0043  Score=52.83  Aligned_cols=25  Identities=36%  Similarity=0.610  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|+|++|||||||+++|....
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~   33 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKK   33 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999998653

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=96.37  E-value=0.0034  Score=57.40  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+|++|+|||||++.|....+
T Consensus        29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            568999999999999999999998765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF05729 NACHT: NACHT domain

Probab=96.36  E-value=0.0032  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+++|.|++|+||||++..++..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHH
Confidence            58999999999999999998865

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.36  E-value=0.0026  Score=52.89  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=18.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.++|.|++|+|||+|++.+....
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999888763

>PRK02496 adk adenylate kinase; Provisional

Probab=96.36  E-value=0.0028  Score=53.74  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+||+||||||+++.|++.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999875

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.36  E-value=0.003  Score=54.74  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +++|+||+|+|||||++.|....
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999987654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		1e-30
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		4e-26
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		3e-23
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		5e-23
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		1e-21
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		1e-21
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-21
1gky_A	187	Refined Structure Of The Complex Between Guanylate		2e-20
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		2e-20
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		7e-20
3tvt_A	292	Structural Basis For Discs Large Interaction With P		1e-19
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		5e-14
3tr0_A	205	Structure Of Guanylate Kinase (Gmk) From Coxiella B		2e-13
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		3e-13
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		5e-13
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		1e-12
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		7e-12
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		7e-12
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		1e-10
1z8f_A	228	Guanylate Kinase Double Mutant A58c, T157c From Myc		1e-10
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		1e-10
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		1e-09

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 86/121 (71%)
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
           R+ +VLIG SGVGRS +K  L++ +P+KF    PYTTRP +  EEDGKEYHF+S E MT 
Sbjct: 19  RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            ISA + +EFG Y+G+++GT  ++V ++    ++A+L+   Q+LK++R+    P ++FIA
Sbjct: 79  NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 230 P 230
           P
Sbjct: 139 P 139

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 80/123 (65%)
Query: 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMT 168
           +R+ +VL+G  GVGR  +K  LI   PD+F    P+TTRP K  EE+GK Y+FVSH+ M 
Sbjct: 4   MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMM 63
Query: 169 SLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
             IS  + +E+G ++  +YGT  +++ ++   G +A+L+   Q+LKVLR+  F P V+FI
Sbjct: 64  QDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFI 123
Query: 229 APP 231
           A P
Sbjct: 124 AAP 126

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 76/128 (59%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RPVVL GPSG G+S L ++L       F     +TTR  +PGEEDGK+Y+FV+ E M   
Sbjct: 5   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
           I+AG  IE  E+ G+LYGTS ++V  +    R+ VL+   Q ++ ++     P+ +F+ P
Sbjct: 65  IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 231 PPFAALKE 238
           P    L++
Sbjct: 125 PSLDVLEQ 132

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 93  EIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152
           +IPT E    LY   ++ RP+V+ GPSG G+S L ++L A  PD F    P TTR  + G
Sbjct: 3   DIPTTE---NLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAG 59
Query: 153 EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQS 212
           E +GK+Y+FVS +   S+I   + IE+ ++ G+ YG++  SV ++  SG+  +L+   Q 
Sbjct: 60  EVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQG 119
Query: 213 LKVLRS-PAFKPLVLFIAPPPFAALKE 238
           +K +++ P      LFIAPP    LK+
Sbjct: 120 VKSVKAIPELNARFLFIAPPSVEDLKK 146

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTS 169
           RP++++GP+   +      L++  PDKF    P+TTRPK+  E DG++YHFVS  E M  
Sbjct: 112 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 168
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            I A K IE G+Y  HLYGTS  SV E+   G+  +L+ +  +++ L++    P+ +FI 
Sbjct: 169 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 228
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
           P     + E   RIT   AR  FD+
Sbjct: 229 PRSLENVLEINKRITEEQARKAFDR 253

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTS 169
           RP++++GP+   +      L++  PDKF    P+TTRPK+  E DG++YHFVS  E M  
Sbjct: 106 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 162
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            I A K IE G+Y  HLYGTS  SV E+   G+  +L+ +  +++ L++    P+ +FI 
Sbjct: 163 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 222
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
           P     + E   RIT   AR  FD+
Sbjct: 223 PRSLENVLEINKRITEEQARKAFDR 247

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 92  EEIPTYEEVAKLYPMET-LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150
           + + +YE V +   ME    RP++++GP+   +      L++  PDKF    P+TTRPK+
Sbjct: 515 DSVLSYETVTQ---MEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKR 568
Query: 151 PGEEDGKEYHFVS-HETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA 209
             E DG++YHFVS  E M   I A K IE G+Y  HLYGTS  SV E+   G+  +L+ +
Sbjct: 569 EYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVS 628
Query: 210 YQSLKVLRSPAFKPLVLFIAPPPFAALKE--SRIT-AFARSPFDQ 251
             +++ L++    P+ +FI P     + E   RIT   AR  FD+
Sbjct: 629 ANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDR 673

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RP+V+ GPSG G+S L ++L A  PD F      TTR  + GE +GK+Y+FVS +   S+
Sbjct: 3   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIA 229
           I   + IE+ ++ G+ YG++  SV ++  SG+  +L+   Q +K +++ P      LFIA
Sbjct: 63  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 122
Query: 230 PPPFAALKE 238
           PP    LK+
Sbjct: 123 PPSVEDLKK 131

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RP+V+ GPSG G+S L ++L A  PD F      TTR  + GE +GK+Y+FVS +   S+
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIA 229
           I   + IE+ ++ G+ YG++  SV ++  SG+  +L+   Q +K +++ P      LFIA
Sbjct: 62  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 230 PPPFAALKE 238
           PP    LK+
Sbjct: 122 PPSVEDLKK 130

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTS 169
           RPV+++GP    +  +   LI+  PDKF    P+TTRPK+  E DG++YHFV S E M  
Sbjct: 107 RPVIILGPM---KDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEK 163
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            I   K IE G+Y  HLYGTS  SV  +   G+  +L+ +  ++K L+     P+ +FI 
Sbjct: 164 DIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIK 223
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
           P     + E   R+T   AR  F++
Sbjct: 224 PKSMENIMEMNKRLTDEQARKTFER 248

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 92  EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP 151
           E + +YE V +L    T  RPV+++GP    +  +   LI+  PDKF    P+TTRPK+ 
Sbjct: 84  ENVLSYEAVQRLSINYT--RPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKRE 138
Query: 152 GEEDGKEYHFV-SHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAY 210
            E DG++YHFV S E M   I     IE G+Y  +LYGTS  SV E+   G+  +L+ + 
Sbjct: 139 YEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSG 198
Query: 211 QSLKVLRSPAFKPLVLFIAPPPFAALKE 238
            ++K L+     P+ +FI P    ++ E
Sbjct: 199 NAIKRLQVAQLYPVAVFIKPKSVDSVME 226

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 63/126 (50%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           +VL GPSGVG+  +++R+       +      TTR  + GE DG +Y F + +   +LI 
Sbjct: 9   IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
             + IE+ EY G+ YGT    V + ++ G    L    +  K +R      L +F+APP 
Sbjct: 69  DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 233 FAALKE 238
              L+E
Sbjct: 129 LEHLRE 134

>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 114 VLIGPSGVGRSELKRRLI-ALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           ++  PSG G++ L R L+ AL   K +    +TTRPK+PG+++G +Y F+      + + 
Sbjct: 11  IISAPSGAGKTSLVRALVKALAEIKIS--ISHTTRPKRPGDQEGVDYFFIDETRFQAXVK 68
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
            G  +E        YGT  D VL  + +GR  +L   +Q  + +R      L +FI PP 
Sbjct: 69  EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128
Query: 233 FAALKESRI 241
             AL+E  I
Sbjct: 129 IEALRERLI 137

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPD-KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
           +VL GPSGVG+  + R  +  DP+  F      TTR  + GE+DG +Y+F S E     I
Sbjct: 11  IVLSGPSGVGKGTV-REAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAI 69
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
             GK +E+ EY G+ YGT  + V E + +G    L    Q    +R    + + +F+ PP
Sbjct: 70  KDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPP 129
Query: 232 PFAALK 237
             + LK
Sbjct: 130 DLSELK 135

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 114 VLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           ++  PSG G+S L + L+   P   TQV+  +TTR  +PGE  G+ Y FV+H+    +IS
Sbjct: 8   IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 67
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
               +E  E  G+ YGTS +++ +++ +G    L+  +Q  + +R        +FI PP
Sbjct: 68  RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 126

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 114 VLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           ++  PSG G+S L + L+   P   TQV+  +TTR  +PGE  G+ Y FV+H+     IS
Sbjct: 20  IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEXIS 79
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
               +E  E  G+ YGTS +++ +++ +G    L+  +Q  + +R        +FI PP
Sbjct: 80  RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFILPP 138

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
           P+V+ GPSGVG+  L +++++  P +F      TTR K+  E +G +Y+FV  +     +
Sbjct: 14  PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL 73
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIA 229
             G+ +EF +Y  + YGT        V  G++ +       +K L+        + +F+ 
Sbjct: 74  KEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVK 133
Query: 230 PPPFAAL 236
           PP    L
Sbjct: 134 PPSIDIL 140

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           +VL  PSG G++ +  +L+    +   +    TTR  + GE++GK+Y+FV  E    L S
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAFKPLVLFIAPP 231
            G++IE  E  G+ YG    ++ + V+ G   +L   +Q + K +       + +FI PP
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 232 PFAALK 237
               L+
Sbjct: 150 SMEELR 155

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           R VVL GPS VG+S + R L    P+    V+  TTR  +PGE DG +YHF+       L
Sbjct: 21  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 79
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
           I  G+++E+ E  G L+  GT +  V     +G   ++       + ++    + + +F+
Sbjct: 80  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 139
Query: 229 APPPFAALK 237
           APP +  L+
Sbjct: 140 APPSWQDLQ 148

>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           R VVL GPS VG+S + R L    P+    V+  TTR  +PGE DG +YHF+       L
Sbjct: 24  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRCPRPGEVDGVDYHFIDPTRFQQL 82
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
           I  G+++E+ E  G L+  GT +  V     +G   ++       + ++    + + +F+
Sbjct: 83  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 142
Query: 229 APPPFAALKESRI 241
           APP +  L+   I
Sbjct: 143 APPSWQDLQARLI 155

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           R VVL GPS VG+S + R L    P+    V+  TTR  +PGE DG +YHF+       L
Sbjct: 24  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 82
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
           I  G+++E+ E  G L+  GT +  V     +G   ++       + ++    + + +F+
Sbjct: 83  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 142
Query: 229 APPPFAALKESRI 241
           APP +  L+   I
Sbjct: 143 APPSWQDLQARLI 155

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
           P+V+ GPSGVG+  L ++L+   P+ F      TTR K+  E++G +Y+F+        +
Sbjct: 25  PLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIA 229
                +E+  Y  + YGT      +     ++ +       +K L+        L +FI 
Sbjct: 85  KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIK 144
Query: 230 PPPFAAL 236
           PP    L
Sbjct: 145 PPSTDVL 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	8e-60
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	3e-59
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	4e-59
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	2e-56
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-47
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	5e-35
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	1e-34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	4e-32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	1e-31
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	3e-31
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	4e-31
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	4e-28
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	4e-27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	1e-26
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	3e-26
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	8e-24
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-18
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	5e-18
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	6e-17

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  187 bits (476), Expect = 8e-60
 Identities = 58/129 (44%), Positives = 87/129 (67%)

Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
           R+ +VLIG SGVGRS +K  L++ +P+KF    PYTTRP +  EEDGKEYHF+S E MT 
Sbjct: 19  RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78

Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            ISA + +EFG Y+G+++GT  ++V ++    ++A+L+   Q+LK++R+    P ++FIA
Sbjct: 79  NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138

Query: 230 PPPFAALKE 238
           P       E
Sbjct: 139 PTDQGTQTE 147

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  184 bits (471), Expect = 3e-59
 Identities = 53/130 (40%), Positives = 79/130 (60%)

Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
           R+ +VL+G  GVGR  +K  LI   PD+F    P+TTRP K  EE+GK Y+FVSH+ M  
Sbjct: 5   RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64

Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
            IS  + +E+G ++  +YGT  +++ ++   G +A+L+   Q+LKVLR+  F P V+FIA
Sbjct: 65  DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 124

Query: 230 PPPFAALKES 239
            P        
Sbjct: 125 APTITPGLNE 134

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  188 bits (479), Expect = 4e-59
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 29/242 (11%)

Query: 6   IPSKALQERK--ILHERSLMENGDTN--SNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
             S+AL  R   +LH   +++ GD        +       D   IP          S  +
Sbjct: 18  FLSQALSFRFGDVLH---VIDAGDEEWWQARRVHSDSETDDIGFIP----------SKRR 64

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
            +           + K   +  +       + + +YE V ++       RP++++GP+  
Sbjct: 65  VER------REWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEV--HYARPIIILGPT-- 114

Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTSLISAGKMIEFG 180
            +      L++  PDKF    P+TTRPK+  E DG++YHFVS  E M   I A K IE G
Sbjct: 115 -KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAG 173

Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
           +Y  HLYGTS  SV E+   G+  +L+ +  +++ L++    P+ +FI P     + E  
Sbjct: 174 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233

Query: 241 IT 242
             
Sbjct: 234 KR 235

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  181 bits (461), Expect = 2e-56
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 58  SPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIG 117
                    G+  S     +K      +      E + +YE V +L       RPV+++G
Sbjct: 52  LGDNEDEQIGIVPSKRRWERK--MRARDRSVKSEENVLSYEAVQRLSI--NYTRPVIILG 107

Query: 118 PSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH-ETMTSLISAGKM 176
           P    +  +   LI+  PDKF    P+TTRPK+  E DG++YHFVS  E M   I     
Sbjct: 108 P---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLF 164

Query: 177 IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAAL 236
           IE G+Y  +LYGTS  SV E+   G+  +L+ +  ++K L+     P+ +FI P    ++
Sbjct: 165 IEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSV 224

Query: 237 KESR 240
            E  
Sbjct: 225 MEMN 228

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  167 bits (422), Expect = 2e-47
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 63  KSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVG 122
            S   +      + K   +  +       + + +YE V ++       RP++++GP    
Sbjct: 486 PSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHY--ARPIIILGP---T 540

Query: 123 RSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTSLISAGKMIEFGE 181
           +      L++  PDKF    P+TTRPK+  E DG++YHFVS  E M   I A K IE G+
Sbjct: 541 KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQ 600

Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
           Y  HLYGTS  SV E+   G+  +L+ +  +++ L++    P+ +FI P     + E  
Sbjct: 601 YNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 659

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score =  123 bits (311), Expect = 5e-35
 Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RPVVL GPSG G+S L ++L       F     +TTR  +PGEEDGK+Y+FV+ E M   
Sbjct: 5   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
           I+AG  IE  E+ G+LYGTS ++V  +    R+ VL+   Q ++ ++     P+ +F+ P
Sbjct: 65  IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124

Query: 231 PPFAALKESRIT 242
           P    L E R+ 
Sbjct: 125 PSLDVL-EQRLR 135

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score =  116 bits (293), Expect = 4e-32
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 106 METLR-RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH 164
           M+  +   +VL GPSGVG+  +++R+       +      TTR  + GE DG +Y F + 
Sbjct: 1   MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTR 60

Query: 165 ETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPL 224
           +   +LI   + IE+ EY G+ YGT    V + ++ G    L    +  K +R      L
Sbjct: 61  DAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDAL 120

Query: 225 VLFIAPPPFAALKESRIT 242
            +F+APP    L   R+ 
Sbjct: 121 FIFLAPPSLEHL-RERLV 137

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score =  114 bits (289), Expect = 1e-31
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
            P+V+ GPSGVG+  L +++++  P +F      TTR K+  E +G +Y+FV  +     
Sbjct: 13  PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAF-KPLVLFI 228
           +  G+ +EF +Y  + YGT        V  G++ +         ++  S      + +F+
Sbjct: 73  LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFV 132

Query: 229 APPPFAALKE 238
            PP    L  
Sbjct: 133 KPPSIDILLG 142

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score =  114 bits (287), Expect = 3e-31
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 103 LYPMETLRR--PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH 160
           L P  ++    P+V+ GPSGVG+  L ++L+   P+ F      TTR K+  E++G +Y+
Sbjct: 14  LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYY 73

Query: 161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSP 219
           F+        +     +E+  Y  + YGT      +     ++ +         ++ +S 
Sbjct: 74  FIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKST 133

Query: 220 AF-KPLVLFIAPPPFAALKE 238
                L +FI PP    L  
Sbjct: 134 HIKNALYIFIKPPSTDVLLS 153

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score =  113 bits (286), Expect = 4e-31
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
             +VL GPSGVG+  ++  +       F      TTR  + GE+DG +Y+F S E     
Sbjct: 9   LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
           I  GKM+E+ EY G+ YGT  + V E + +G    L    Q    +R    + + +F+ P
Sbjct: 69  IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTP 128

Query: 231 PPFAALKESRIT 242
           P  + L ++RI 
Sbjct: 129 PDLSEL-KNRII 139

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score =  105 bits (265), Expect = 4e-28
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           R VVL GPS VG+S + R L    P+    V+  TTR  +PGE DG +YHF+       L
Sbjct: 21  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 79

Query: 171 ISAGKMIEFGEYKG--HLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
           I  G+++E+ E  G  H  GT +  V     +G   ++       + ++    + + +F+
Sbjct: 80  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 139

Query: 229 APPPFAALKESRIT 242
           APP +  L ++R+ 
Sbjct: 140 APPSWQDL-QARLI 152

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score =  103 bits (260), Expect = 4e-27
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
           +VL  PSG G++ +  +L+    +   +    TTR  + GE++GK+Y+FV  E    L S
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89

Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVL----NPAYQSLKVLRSPAFKPLVLFI 228
            G++IE  E  G+ YG    ++ + V+ G   +L      A++ ++++R        +FI
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVS---IFI 146

Query: 229 APPPFAALKESRIT 242
            PP    L+  R+ 
Sbjct: 147 MPPSMEELRR-RLC 159

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score =  101 bits (255), Expect = 1e-26
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
            ++  PSG G++ L R L+    +    ++ +TTRPK+PG+++G +Y F+      +++ 
Sbjct: 10  FIISAPSGAGKTSLVRALVKALAEIKISIS-HTTRPKRPGDQEGVDYFFIDETRFQAMVK 68

Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
            G  +E        YGT  D VL  + +GR  +L   +Q  + +R      L +FI PP 
Sbjct: 69  EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128

Query: 233 FAALKESRIT 242
             AL+E R+ 
Sbjct: 129 IEALRE-RLI 137

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score =  101 bits (254), Expect = 3e-26
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
            ++  PSG G+S L + L+   P   TQV+  +TTR  +PGE  G+ Y FV+H+    +I
Sbjct: 19  YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78

Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
           S    +E  E  G+ YGTS +++ +++ +G    L+  +Q  + +R        +FI PP
Sbjct: 79  SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 138

Query: 232 PFAALKESRIT 242
               L   R+ 
Sbjct: 139 SKIELDR-RLR 148

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 97.2 bits (241), Expect = 8e-24
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 104 YPMETLRRPVVLIGPSGVGR---SELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH 160
           Y +    RPVVL+GPS  G      +++ L      +F       TR             
Sbjct: 136 YDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIS-ITRVTADIS------- 187

Query: 161 FVSHETMTSLISAGKMIEFGEYKGHL--YGTSSDSVLELVNSGRVAVLN-PAYQSLKVLR 217
            ++  ++ +  S   +IE    +  L    +  + + EL  + ++ VL+         L 
Sbjct: 188 -LAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLS 246

Query: 218 SPAFKPLVLFIAPPPFAALKESR 240
             +  P+V+++       L+   
Sbjct: 247 KTSLAPIVVYVKISSPKVLQRLI 269

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 83.3 bits (205), Expect = 2e-18
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 46/235 (19%)

Query: 16  ILHERSLMENGDTNSNPS--LGPCGPRLDAACIP---LVKIADTVYSSPSKAKSPTGLSC 70
           +      + NG   S  +  +G     ++   IP     +   +V  +  K         
Sbjct: 130 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADF 189

Query: 71  S-----AAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSE 125
                  + K          +    + + P YE V          RPV + GP       
Sbjct: 190 WRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREA--GFLRPVTIFGP---IADV 244

Query: 126 LKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH 185
            + +L   +PD +                                I+  +  + G  +  
Sbjct: 245 AREKLAREEPDIYQ-------------------------------IAKSEPRDAGTDQRS 273

Query: 186 LYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
                  ++ ++++  + A+L+    ++  L    + P+V+F+ P     +K  R
Sbjct: 274 SGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 328

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 82.3 bits (202), Expect = 5e-18
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 68/240 (28%)

Query: 1   MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPS 60
           +  GIIP+K   E+    + +L +    +        G R                    
Sbjct: 149 VERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRS------------------- 189

Query: 61  KAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSG 120
                         K          +    + + P YE V          RPV + GP  
Sbjct: 190 -------------SKRNLRKSREDLSAQPVQTKFPAYERVVLREA--GFLRPVTIFGPI- 233

Query: 121 VGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180
                 + +L   +PD +                                I+  +  + G
Sbjct: 234 --ADVAREKLAREEPDIYQ-------------------------------IAKSEPRDAG 260

Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
             +         ++ ++++  + A+L+    ++  L    + P+V+F+ P     +K  R
Sbjct: 261 TDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 320

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 77.9 bits (191), Expect = 6e-17
 Identities = 37/246 (15%), Positives = 70/246 (28%), Gaps = 77/246 (31%)

Query: 2   RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
             GIIP+++  E+    E +    G                                   
Sbjct: 62  ERGIIPNQSRAEQLASLEAAQRAVGVGPG------------------------------- 90

Query: 62  AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPME-------TLRRPVV 114
             S    + +   + + +     +T    RE++       +  P E       + +RPVV
Sbjct: 91  -SSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVV 149

Query: 115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG 174
           ++GP         ++L A  PD+F      +                             
Sbjct: 150 ILGPV---ADIAMQKLTAEMPDQFEIAETVSRTD-------------------------- 180

Query: 175 KMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFA 234
                            D+V  +    + A+L+    +++ L    + P+V+F  P    
Sbjct: 181 ---------SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRP 231

Query: 235 ALKESR 240
           ALK  R
Sbjct: 232 ALKALR 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	100.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.97
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.96
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.95
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.95
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.95
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.94
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.92
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.92
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.91
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.86
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.83
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.82
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.81
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.79
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.64
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.22
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.21
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.19
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.79
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.74
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.68
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.52
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.52
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.5
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.49
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.48
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.43
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.41
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.4
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.37
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.37
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.32
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.31
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.29
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.29
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.29
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.27
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.26
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.24
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.24
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.2
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.18
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.16
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.15
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.14
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.11
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.09
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.08
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.06
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.06
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.02
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.0
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.99
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.99
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.98
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.95
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.94
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.88
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.87
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.87
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.83
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.8
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.79
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.78
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.76
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.69
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.68
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.67
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.66
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.62
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.6
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.58
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.57
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.54
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.46
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.46
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.45
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.44
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.41
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.39
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.38
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.35
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.34
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.33
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.29
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.28
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.28
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.27
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.27
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.26
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.26
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.26
1g6h_A	257	High-affinity branched-chain amino acid transport	97.25
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.25
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.24
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.24
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.23
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.23
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.23
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.22
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.22
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.22
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.2
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.18
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.18
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.14
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.14
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.12
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.11
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.09
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.08
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.08
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.07
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.07
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.05
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.03
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.03
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.02
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.02
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.02
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.01
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.01
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.01
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.98
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.97
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.93
1via_A	175	Shikimate kinase; structural genomics, transferase	96.93
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.89
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.88
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.88
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.87
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.87
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.87
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.85
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.85
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.84
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.84
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.83
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.82
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.8
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.79
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.78
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.76
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.76
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.75
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.73
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.72
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.68
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.68
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.68
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.67
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.66
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.66
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.64
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.64
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.61
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.61
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.6
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.59
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.56
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.56
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.56
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.55
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.52
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.52
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.51
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.51
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.5
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.49
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.49
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.46
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.46
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.46
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.45
3bos_A	242	Putative DNA replication factor; P-loop containing	96.45
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.42
2og2_A	359	Putative signal recognition particle receptor; nuc	96.42
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.41
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.41
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.41
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.41
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.4
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.39
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.39
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.38
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.37
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.35
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.33
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.32
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.31
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.31
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.3
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.3
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.28
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.28
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.27
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.26
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.24
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.24
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.23
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.23
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.21
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.19
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.19
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.18
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.18
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.18
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.17
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.17
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.17
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.16
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.15
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.15
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.15
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.12
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.12
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.1
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.1
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.1
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.1
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.1
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.08
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.05
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.04
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.04
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.03
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.03
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.03
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.02
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.02
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.01
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.01
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.99
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.99
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.99
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.97
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.97
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.96
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.96
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.95
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.92
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.92
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.92
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.9
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.89
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.88
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.88
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.87
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.85
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.85
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.82
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.82
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.81
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.81
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.81
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.79
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.78
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.78
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.77
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.76
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.75
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.75
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.74
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.74
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.73
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.73
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.73
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.72
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.72
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.72
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.71
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.69
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.68
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.66
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.66
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.64
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.62
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.6
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.6
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.59
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.59
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.58
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.57
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.57
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.57
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	95.57
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.56
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.54
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.53
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.53
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.47
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.46
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.46
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.46
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.45
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.44
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.43
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.43
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.42
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.42
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.42
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.4
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.39
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.39
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.36
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.33
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.33
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.33
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.29
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.28
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.28
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.27
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.27
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.27
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.24
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.24
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.24
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.24
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.23
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.23
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.2
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.2
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.19
2qgz_A	308	Helicase loader, putative primosome component; str	95.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.17
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.16
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.16
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.14
3co5_A	143	Putative two-component system transcriptional RES	95.12
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.05
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.04
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.04
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.02
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.99
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.99
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.97
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.96
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.95
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.92
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.92
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	94.9
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.89
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.85
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.85
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	94.83
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.82
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.8
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.77
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.76
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	94.76
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.72
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.69
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.68
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	94.68
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.67
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.64
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.61
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.6
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.56
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.56
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.55
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	94.55
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.54
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.53
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.52
3pvs_A	447	Replication-associated recombination protein A; ma	94.52
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.51
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.48
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.47
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.45
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.45
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.44
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.32
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.31
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.29
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.28
2fna_A	357	Conserved hypothetical protein; structural genomic	94.24
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.22
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.21
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.17
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.18
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.12
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	94.11
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.08
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.06
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.04
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.04
2chq_A	319	Replication factor C small subunit; DNA-binding pr	93.97
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.93

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=3.3e-42  Score=314.79  Aligned_cols=145  Identities=37%  Similarity=0.628  Sum_probs=136.4

Q ss_pred             CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHHHHHH
Q psy14166         92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTSL  170 (264)
Q Consensus        92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~f~~~  170 (264)
                      +++++||+|++++++  ..|+|||+||+   |+||.++|++.+|+.|+.+|+||||+||+||++|++|||| ++++|+++
T Consensus        84 ~~~~~YE~V~~~~~~--~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~  158 (292)
T 3tvt_A           84 ENVLSYEAVQRLSIN--YTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERD  158 (292)
T ss_dssp             --CCCEEEEEEEECS--SCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHH
T ss_pred             ccccchheEEeccCC--CCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHH
Confidence            357899999999876  45999999994   9999999999999999999999999999999999999999 88999999


Q ss_pred             HHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       171 i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      +.+|.|+||+++.||+|||+.++|++++++|++||||++++|+++|+...+.|++|||.|||+++|+++++
T Consensus       159 i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~  229 (292)
T 3tvt_A          159 IQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNR  229 (292)
T ss_dssp             HHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCT
T ss_pred             HhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999987543

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=6.4e-39  Score=293.22  Aligned_cols=147  Identities=35%  Similarity=0.639  Sum_probs=138.7

Q ss_pred             CCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHH
Q psy14166         88 DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHET  166 (264)
Q Consensus        88 ~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~  166 (264)
                      +++...+++||+|+++++.  .+++|||+||   ||+||.++|++.+|+.|..+|+||||+||+||++|++|||+ |+++
T Consensus        85 ~~~~~~~~~Ye~V~~~~~~--~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~ee  159 (295)
T 1kjw_A           85 QGREDSVLSYETVTQMEVH--YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREK  159 (295)
T ss_dssp             CCCCCCCCCEEEEEEEECC--SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHH
T ss_pred             ccccCCCCCcceeeeecCC--CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHH
Confidence            4556678999999998765  4599999999   79999999999999889999999999999999999999999 9999


Q ss_pred             HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      |++++.+|.|+||+++.||+|||+.++|++++++|++||||+++++++.++...+.|++|||.|||+++|+++
T Consensus       160 f~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L  232 (295)
T 1kjw_A          160 MEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI  232 (295)
T ss_dssp             HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHH
T ss_pred             HHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998889999999999999999873

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=100.00  E-value=1.6e-38  Score=273.03  Aligned_cols=136  Identities=35%  Similarity=0.656  Sum_probs=127.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      |+|||+|||||||+||++.|++.+|+.|..+|+||||+||+||.+|+||||+|.++|++++.+|.|+||+++.||+|||+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCHHHHHHHhcC-CCCcEEEEEeCCChHHHHHHHHhhccCC
Q psy14166        191 SDSVLELVNSGRVAVLNPAYQSLKVLRSP-AFKPLVLFIAPPPFAALKESRITAFARS  247 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~~~~~~Lr~~-~~~p~vIfI~pps~e~l~~~r~~~~~~~  247 (264)
                      .++|.+++++|++||+|++++++++++.. .+++++|||.|||.++|+++ ...++..
T Consensus        82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~R-L~~Rg~e  138 (186)
T 1ex7_A           82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKR-LEGRGTE  138 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHH-HHHHCCS
T ss_pred             cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHH-HHhcCCC
Confidence            99999999999999999999999999974 67999999999999999874 4444433

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-35  Score=297.93  Aligned_cols=147  Identities=35%  Similarity=0.644  Sum_probs=139.2

Q ss_pred             CCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHH
Q psy14166         88 DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHET  166 (264)
Q Consensus        88 ~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~  166 (264)
                      +++.+.+++||+|+++++.  .+|+|||+||+   |+||.++|+..+|+.|.++|+||||+||+||.+|++|||+ |+++
T Consensus       511 ~~~~~~~~~Ye~V~~~~~~--~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~  585 (721)
T 2xkx_A          511 QGREDSVLSYETVTQMEVH--YARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREK  585 (721)
T ss_pred             hcccccCCCceeeecccCC--CCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHH
Confidence            4567788999999998766  45999999995   9999999999999889999999999999999999999999 9999


Q ss_pred             HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      |++++.+|.|+||+++.||+|||+.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++
T Consensus       586 f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l  658 (721)
T 2xkx_A          586 MEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI  658 (721)
T ss_pred             HHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999899999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.7e-33  Score=243.76  Aligned_cols=126  Identities=45%  Similarity=0.835  Sum_probs=122.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++|+|+||||||||||++.|++.+|+.|...+++|||+|+.||.+|++|+|+|.++|++++.++.|+|++++.||+||
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG   97 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG   97 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence            45999999999999999999999999877889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFA  234 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e  234 (264)
                      |+.++|++++++|++||||++++++++++...+.|++|||.|||.+
T Consensus        98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~  143 (197)
T 3ney_A           98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG  143 (197)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS
T ss_pred             cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            9999999999999999999999999999999999999999999984

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.97  E-value=7.2e-31  Score=253.18  Aligned_cols=123  Identities=18%  Similarity=0.334  Sum_probs=98.1

Q ss_pred             CCCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCH
Q psy14166         85 ETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH  164 (264)
Q Consensus        85 ~~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~  164 (264)
                      .++.++.+++++||||+++++.  .+++|||+||||+|   |.++|++.+|+.|..   +||| ||+||++|++|||   
T Consensus       201 ~~~~~~~~~~~~YEeV~~~~~~--~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG~~Y~F---  268 (468)
T 3shw_A          201 LSAQPVQTKFPAYERVVLREAG--FLRPVTIFGPIADV---AREKLAREEPDIYQI---AKSE-PRDAGTDQRSSGI---  268 (468)
T ss_dssp             ------CCCCCSEEEEEEECCS--SCCCEEEESTTHHH---HHHHHHHHCTTTEEE---CCCB-C----------CB---
T ss_pred             cccccccccCCCcceeEcccCC--CCCEEEEECCCHHH---HHHHHHHhCCCceee---ecCC-CCCcccccccCCc---
Confidence            4778889999999999998766  56999999999999   999999999998865   4699 8999999999998   


Q ss_pred             HHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166        165 ETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA  243 (264)
Q Consensus       165 ~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~  243 (264)
                                              |+.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++|++.
T Consensus       269 ------------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl  323 (468)
T 3shw_A          269 ------------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL  323 (468)
T ss_dssp             ------------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHH
T ss_pred             ------------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhcc
Confidence                                    7899999999999999999999999999999999999999999999999865544

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.96  E-value=2.8e-30  Score=244.36  Aligned_cols=122  Identities=18%  Similarity=0.368  Sum_probs=103.9

Q ss_pred             CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH
Q psy14166         86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE  165 (264)
Q Consensus        86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~  165 (264)
                      +++++.+++++||||+++++.  .+++|||+||||   +||.++|++.+|+.|..    |||+||+||++|++|||+   
T Consensus       210 ~~~~~~~~~~~YE~V~~~~~~--~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~Fv---  277 (391)
T 3tsz_A          210 SAQPVQTKFPAYERVVLREAG--FLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGII---  277 (391)
T ss_dssp             -------CCCSEEEEEEEECS--SCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CCC---
T ss_pred             ccccccccCCCcceEECcCCC--CCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCccCCcC---
Confidence            456778889999999998765  569999999998   89999999999998764    689999999999999998   


Q ss_pred             HHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166        166 TMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA  243 (264)
Q Consensus       166 ~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~  243 (264)
                                              +.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++|.+.
T Consensus       278 ------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~  331 (391)
T 3tsz_A          278 ------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL  331 (391)
T ss_dssp             ------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHH
T ss_pred             ------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcC
Confidence                                    589999999999999999999999999999999999999999999999865443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.95  E-value=1.8e-28  Score=206.63  Aligned_cols=130  Identities=41%  Similarity=0.723  Sum_probs=119.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++++|+||||||||||++.|+..++..+...++||||+|+.+|.+|.+|+|++.++|..++.++.|++++++.+|+||
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg   83 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   83 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence            46899999999999999999999988766788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      ++.+.+.+++++|++||+|++++++..++...+.+.+|||.||+.++|++
T Consensus        84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~  133 (180)
T 1kgd_A           84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN  133 (180)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSC
T ss_pred             ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHh
Confidence            99999999999999999999999999999887889999999999877654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.95  E-value=1.2e-27  Score=206.25  Aligned_cols=131  Identities=32%  Similarity=0.525  Sum_probs=124.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++|+|+||||||||||++.|+..++..+...+++|||+|+.+|.+|.+|+|++.+.|..++.++.|++++++.+|+||
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            56899999999999999999999998866889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ++.+.+.+++++|++||+|+++++...++.....+++|||.|||.++|+++
T Consensus        87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~R  137 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNR  137 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC
T ss_pred             CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHH
Confidence            999999999999999999999999999998888999999999998887653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.94  E-value=2.5e-26  Score=196.69  Aligned_cols=133  Identities=26%  Similarity=0.529  Sum_probs=122.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      ..+++|+|+||||||||||++.|++..+..+...++||||+++.+|.+|.+|+|++.++|..++.++.|++++++.|+.|
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            36789999999999999999999998875588899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCC--CcEEEEEeCCChHHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~--~p~vIfI~pps~e~l~~~r  240 (264)
                      |++.+.+.+++++|++||+|++++++..++....  .+.+|||.|++.+++.++.
T Consensus        90 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl  144 (204)
T 2qor_A           90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRL  144 (204)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHH
Confidence            9999999999999999999999999999987655  6799999988899988744

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.92  E-value=9.2e-26  Score=207.13  Aligned_cols=111  Identities=28%  Similarity=0.406  Sum_probs=93.7

Q ss_pred             CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy14166         92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI  171 (264)
Q Consensus        92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i  171 (264)
                      .++++||+|+++++.  ..|+|||+||   ||++|+++|+..+|++|+.+++. +                      .++
T Consensus       129 ~~~~~YE~V~~~~~~--~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~----------------------r~i  180 (308)
T 3kfv_A          129 GRYPPYERVVLREAS--FKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-S----------------------RTD  180 (308)
T ss_dssp             HTCCSEEEEEEEECS--SCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------------------------
T ss_pred             CCCcCchheeccccC--CCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-c----------------------ccc
Confidence            357899999999865  4599999999   69999999999999999999872 1                      115


Q ss_pred             HcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166        172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       172 ~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~  242 (264)
                      .++.||            +.++|++++++|++||||++++|+++|+...+.|++|||.|||+++|+++|.+
T Consensus       181 ~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R  239 (308)
T 3kfv_A          181 SPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQW  239 (308)
T ss_dssp             ----CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHH
T ss_pred             cCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhc
Confidence            577776            79999999999999999999999999999999999999999999999986443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.92  E-value=1.5e-24  Score=185.82  Aligned_cols=132  Identities=39%  Similarity=0.680  Sum_probs=122.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++++|+||||||||||++.|...++..++..++||||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|+||
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence            35899999999999999999999988878999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      ++.+.++++++.|++++++++++++..++...+.|.+|||++|+++.|.++.
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~  134 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRL  134 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHH
Confidence            9999999999999999999999999999877889999999999998887743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.91  E-value=6.2e-24  Score=185.91  Aligned_cols=132  Identities=28%  Similarity=0.484  Sum_probs=121.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCCC-CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDPD-KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL  186 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~-~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~  186 (264)
                      ..+++++|+||||||||||++.|+...|. .+...|++|||+++.+|.+|++|+|++.+.|..+..++.|+|+.++.+++
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~   93 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY   93 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence            36799999999999999999999999873 46778999999999999999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ||++.+.+.++++.|+++|||+|+++.+.++..-.....|||.+|+++.|+++
T Consensus        94 yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~R  146 (219)
T 1s96_A           94 YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRR  146 (219)
T ss_dssp             EEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999987555789999999999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.86  E-value=1e-20  Score=159.97  Aligned_cols=131  Identities=29%  Similarity=0.538  Sum_probs=121.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+++|+||||||||||++.|+...| .+.....++||.++.++..|.+|+|++...|..+...+.|++++.+.++.||
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYG   84 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccccc
Confidence            468999999999999999999999887 4667788999999888899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      ++.+.+.++++.|+++|+|++++++..++.....+.+||+.+|+.+++.++.
T Consensus        85 ~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl  136 (205)
T 3tr0_A           85 TEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERL  136 (205)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHH
T ss_pred             chHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHH
Confidence            9999999999999999999999999999988888999999999998887743

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.83  E-value=1.8e-20  Score=162.82  Aligned_cols=130  Identities=28%  Similarity=0.490  Sum_probs=111.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI-ALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~-~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      .+.+++|+||+|||||||++.|+ ...|. +...+++|||+|+.++.+|.+|+|++...|..+...+.|++++.+.++.|
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY  104 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence            46899999999999999999999 88775 67788999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCC-CCcEEEEEeCCChHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPA-FKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~-~~p~vIfI~pps~e~l~~~  239 (264)
                      |++.+.+.++++.|++||+++++++...++... ..+.+|||.+|+.+.+.++
T Consensus       105 ~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~R  157 (231)
T 3lnc_A          105 GVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRR  157 (231)
T ss_dssp             EEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred             CCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence            999989999999999999999999998887654 4678999999999888774

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.82  E-value=2.6e-21  Score=178.94  Aligned_cols=133  Identities=20%  Similarity=0.315  Sum_probs=95.0

Q ss_pred             CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHH---HHHHHHhcCCCCccccccccCCCCCCCCCCCcce--eecCHHH
Q psy14166         92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSE---LKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEY--HFVSHET  166 (264)
Q Consensus        92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsT---L~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY--~fvs~~~  166 (264)
                      +.+++||+|..+       |+|||+||+++|-.+   +-+.|+...+.+|+..|++| |.+...+..+..+  +++++..
T Consensus       131 ~~~~~Ye~vp~~-------RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~  202 (337)
T 4dey_A          131 EHTPPYDVVPSM-------RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAI  202 (337)
T ss_dssp             --CCSEEEECSS-------CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------
T ss_pred             CCCCCccccCCC-------CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhh
Confidence            567899999533       789999999999875   45667777777787888654 7777666666553  5778888


Q ss_pred             HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHH-HHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~-~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      |+..+..+.|+|        +++..+.|.++.++|++||||++++ |+++|+...+.|++|||.|||+++|+++.
T Consensus       203 ~e~~~~~~~~~e--------v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL  269 (337)
T 4dey_A          203 IERSNTRSSLAE--------VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLI  269 (337)
T ss_dssp             ------CCCHHH--------HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHH
T ss_pred             hcccccccchHH--------HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHH
Confidence            888888888776        4566788888888999999999998 99999999999999999999999999863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.81  E-value=5.3e-19  Score=153.45  Aligned_cols=131  Identities=25%  Similarity=0.485  Sum_probs=118.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++++|+||||||||||++.|+...|..+...+++||++++.++.++++|.|++...|..+..++.|++++.+.++.||
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  101 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG  101 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence            46899999999999999999999988734445678899998888889999999999999999889999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCC--CCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPA--FKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~--~~p~vIfI~pps~e~l~~~  239 (264)
                      ++.+.+.++++.+++++++.++.+.+++|..-  ..|..|||.+|++..|.+.
T Consensus       102 ~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~  154 (218)
T 1z6g_A          102 TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR  154 (218)
T ss_dssp             EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred             CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence            99889999999999999999999999999765  5779999999999888764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.79  E-value=1e-18  Score=147.67  Aligned_cols=131  Identities=31%  Similarity=0.564  Sum_probs=109.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+|+||||||||||++.|.......++..+.+++|.+..++.++.+|.|.+.+.|..++.++.++++..+.+++||
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            45899999999999999999999987223555678899998888888999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      .+.+.+.++++.|+.+|+|+.+.+...++.....+++||+.||+.+.+.++
T Consensus        85 ~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~R  135 (207)
T 2j41_A           85 TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRER  135 (207)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC-------
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHH
Confidence            999999999999999999999887777775444789999999887777653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.64  E-value=3.9e-15  Score=127.31  Aligned_cols=130  Identities=31%  Similarity=0.556  Sum_probs=112.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecC--ce
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKG--HL  186 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g--~~  186 (264)
                      .+.+++|+||||||||||++.|+...+. +...+.+++++++.++..|++|.|++...|..+...+.|+++..+.+  ++
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence            5699999999999999999999998874 33457888988877788899999999999998888888999888888  78


Q ss_pred             ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ||++.+.+++.++++..++++++..++..++......+.+++..|+...|.+.
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep  150 (207)
T 1znw_A           98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR  150 (207)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred             cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence            99999889999999999999999988888877667778899998888777653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.22  E-value=6.7e-12  Score=116.43  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC--------CccccccccCCCCCCCCCCCcceeecCHHHH-HHHHHcCCccee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD--------KFTQVTPYTTRPKKPGEEDGKEYHFVSHETM-TSLISAGKMIEF  179 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~--------~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f-~~~i~~~~flE~  179 (264)
                      ++++|+|+||+|||||||+..|++..+.        .+...++++|++|+..|.+|++|||++..++ .+.+..+.|.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            4579999999999999999999998762        1223467899999999999999999987766 444444455443


Q ss_pred             eeecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHhcC----------------------CCCcEEEEEeCCChHHH
Q psy14166        180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLRSP----------------------AFKPLVLFIAPPPFAAL  236 (264)
Q Consensus       180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr~~----------------------~~~p~vIfI~pps~e~l  236 (264)
                      .          .+.|.++.+.|+++|+.+-. -.++.+...                      .+...+|+|.+ +.++|
T Consensus       119 a----------~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~-~re~L  187 (339)
T 3a8t_A          119 A----------GKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDV-SVKVL  187 (339)
T ss_dssp             H----------HHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEEC-CHHHH
T ss_pred             H----------HHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeC-CHHHH
Confidence            3          46777888899998887553 344444321                      12345667766 58888


Q ss_pred             HHH
Q psy14166        237 KES  239 (264)
Q Consensus       237 ~~~  239 (264)
                      .++
T Consensus       188 ~~R  190 (339)
T 3a8t_A          188 TDY  190 (339)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.21  E-value=1.3e-12  Score=120.37  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~  181 (264)
                      +++|+|+||+|||||||+..|++.++..        +-..++.||++|+.+|.+|++|||++..+|.+.+..+.|.+   
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~---   79 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD---   79 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH---
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH---
Confidence            4689999999999999999999987631        12357789999999999999999999888876655555544   


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHh
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLR  217 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr  217 (264)
                             .....|.++.+.|+++||.+- .-.++.|-
T Consensus        80 -------~a~~~i~~i~~~gk~pIlVGGTglYi~aLl  109 (322)
T 3exa_A           80 -------LATPLITEIHERGRLPFLVGGTGLYVNAVI  109 (322)
T ss_dssp             -------HHHHHHHHHHHTTCEEEEESCCHHHHHHHH
T ss_pred             -------HHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence                   346889999999999988854 44566554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.19  E-value=2e-12  Score=122.63  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY  182 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~  182 (264)
                      ++|+|+||||||||||+..|++.++..        +-..+++||++|+.+|.+|++|||++..+|.+++..+.|+++.  
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a--   80 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC--   80 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence            689999999999999999999876531        2223678999999999999999999999898888888888875  


Q ss_pred             cCceecCCHHHHHHHHHcCCeEEEEcC
Q psy14166        183 KGHLYGTSSDSVLELVNSGRVAVLNPA  209 (264)
Q Consensus       183 ~g~~YGt~~~si~~vl~~Gki~vld~~  209 (264)
                              ...|.++.+.|+++||.+-
T Consensus        81 --------~~~i~~i~~~g~~pilVGG   99 (409)
T 3eph_A           81 --------MNAIEDIHRRGKIPIVVGG   99 (409)
T ss_dssp             --------HHHHHHHHTTTCEEEEECS
T ss_pred             --------HHHHHHHHhcCCCEEEECC
Confidence                    6788999999999988754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.16  E-value=1.7e-12  Score=119.33  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC--------CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD--------KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE  181 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~--------~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~  181 (264)
                      +++|+|+||+|||||||+..|++..+.        .+...+++||++|+.+|.+|++|||++..++.+.+..+.|.+   
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~---   86 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRR---   86 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHH---
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHH---
Confidence            468999999999999999999998763        122346789999999999999999999888866555555543   


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHh
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLR  217 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr  217 (264)
                             .....|+++.+.|+++||.+- .-.++.|-
T Consensus        87 -------~a~~~i~~i~~~g~~pilVGGTglYi~all  116 (316)
T 3foz_A           87 -------DALAEMADITAAGRIPLLVGGTMLYFKALL  116 (316)
T ss_dssp             -------HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             -------HHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence                   345788999999999887744 44556554

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.04  E-value=1.1e-10  Score=103.35  Aligned_cols=117  Identities=12%  Similarity=0.089  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCcc--------ccccccCCCCCCCCCCCcceeecCHHHHHH-HHHcCCcceeee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFT--------QVTPYTTRPKKPGEEDGKEYHFVSHETMTS-LISAGKMIEFGE  181 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~--------~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~-~i~~~~flE~~~  181 (264)
                      ++|+|+||+|||||||++.|++..+..+-        ....++|++|...|..|..|+|++...+.+ .+....|     
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f-----   76 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA-----   76 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH-----
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH-----
Confidence            47899999999999999999986432111        112467888887888999999987543321 0000111     


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHH-hc----CCCCcEEEEEeCCChHHHHH
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVL-RS----PAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~L-r~----~~~~p~vIfI~pps~e~l~~  238 (264)
                           .......+ ++++.|+.+|++... ..++.+ +.    ..+...+|||.+|..+.+.+
T Consensus        77 -----~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~  133 (253)
T 2ze6_A           77 -----HRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLT  133 (253)
T ss_dssp             -----HHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHH
T ss_pred             -----HHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHH
Confidence                 11123445 556788888887653 333333 33    44566899999998556544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.94  E-value=6.3e-10  Score=100.34  Aligned_cols=109  Identities=13%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccc-cCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee-eecCce
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPY-TTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG-EYKGHL  186 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~-TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~-~~~g~~  186 (264)
                      .+.+|+|+||||||||||++.|+...+..+ ..|+. ++|.+..+              |..++..  |.++. ++.+++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~-~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~   94 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNV-IVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPY   94 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCC-EEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCe-EEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHH
Confidence            467999999999999999999998765322 33333 55654332              2222221  44433 344678


Q ss_pred             ecCC-HHHHHHHHHcCCeEEEEcCHHH-------HHHHhcCCCCcEE-EEEeCCChH
Q psy14166        187 YGTS-SDSVLELVNSGRVAVLNPAYQS-------LKVLRSPAFKPLV-LFIAPPPFA  234 (264)
Q Consensus       187 YGt~-~~si~~vl~~Gki~vld~~~~~-------~~~Lr~~~~~p~v-IfI~pps~e  234 (264)
                      ||+. ...+...+++|+.+|+|++..+       .+.++..++...+ +|+.||+..
T Consensus        95 ~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~  151 (287)
T 1gvn_B           95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS  151 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence            8874 4677888899999999998643       2334555555444 444555544

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.79  E-value=2.9e-10  Score=104.90  Aligned_cols=89  Identities=15%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCcc--------ccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFT--------QVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY  182 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~--------~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~  182 (264)
                      ++|+|+||+|||||||+..|++..+..+-        ...+++|++|+..|.+|+.|||++..++......+.|++..  
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a--   83 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA--   83 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH--
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH--
Confidence            58999999999999999999987652111        12467899999999999999999866554333333343322  


Q ss_pred             cCceecCCHHHHHHHHHcCCeEEEEcC
Q psy14166        183 KGHLYGTSSDSVLELVNSGRVAVLNPA  209 (264)
Q Consensus       183 ~g~~YGt~~~si~~vl~~Gki~vld~~  209 (264)
                              ...+.++.+.|+++|+.+-
T Consensus        84 --------~~~i~~i~~~g~~~IlvGG  102 (323)
T 3crm_A           84 --------LAAMAKATARGRIPLLVGG  102 (323)
T ss_dssp             --------HHHHHHHHHTTCEEEEEES
T ss_pred             --------HHHHHHHHHcCCeEEEECC
Confidence                    4667778888888777654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.74  E-value=2.6e-08  Score=81.72  Aligned_cols=115  Identities=19%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccc-ccc--ccCCCCCCC-CCCCcceeecCHHHHHHHHHcCCcceeeeecCc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQ-VTP--YTTRPKKPG-EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH  185 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~-~v~--~TTR~~r~g-E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~  185 (264)
                      +.+|+|+|+|||||||+++.|++..+..|.. .+-  +.+++++.+ +.+|.+|.  +         .+.+.. ......
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~-~~~~~~   70 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD--A---------DGGVSI-GPEFRA   70 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC--T---------TSCEEE-CHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc--C---------CCcccc-chhHHH
Confidence            3689999999999999999999986533311 111  113443321 22344432  0         000000 000112


Q ss_pred             eecCCHHHHHHHHHcCCeEEEEcCH----H----HHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        186 LYGTSSDSVLELVNSGRVAVLNPAY----Q----SLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       186 ~YGt~~~si~~vl~~Gki~vld~~~----~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      .|+.....+...++.|..+|+++..    .    ..+.+  ......+||+.+| ++++.++
T Consensus        71 ~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~v~l~~~-~e~l~~R  129 (178)
T 1qhx_A           71 LEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV--GDLDVLWVGVRCD-GAVAEGR  129 (178)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH--TTCCEEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh--cCCcEEEEEEECC-HHHHHHH
Confidence            3444445567778889989999853    1    22333  2233468889975 7777664

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.68  E-value=1.2e-08  Score=94.72  Aligned_cols=105  Identities=14%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC------Cc--cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD------KF--TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY  182 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~------~f--~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~  182 (264)
                      ++|+|+||+|||||||+..|++..+.      .+  -..+.++|++|...|..|..||+++..++...+....|.+    
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~----   83 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKK----   83 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHH----
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHH----
Confidence            58999999999999999999987651      11  2345678999999999999999987655433222222222    


Q ss_pred             cCceecCCHHHHHHHHHcCCeEEEEc-CHHHHHHHhcCCCCcEEEEEe
Q psy14166        183 KGHLYGTSSDSVLELVNSGRVAVLNP-AYQSLKVLRSPAFKPLVLFIA  229 (264)
Q Consensus       183 ~g~~YGt~~~si~~vl~~Gki~vld~-~~~~~~~Lr~~~~~p~vIfI~  229 (264)
                            .....+.+++..|+++|+.. ..-.++.|.. ++.   +|+.
T Consensus        84 ------~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~-~l~---~~~~  121 (340)
T 3d3q_A           84 ------RAEKYIKDITRRGKVPIIAGGTGLYIQSLLY-NYA---FEDE  121 (340)
T ss_dssp             ------HHHHHHHHHHHTTCEEEEECCCHHHHHHHHB-CSC---CC--
T ss_pred             ------HHHHHHHHHHhCCCcEEEECChhhhHHHHHh-ccc---ccCC
Confidence                  22456677777888876654 4445566664 232   5655

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.53  E-value=9.3e-08  Score=79.09  Aligned_cols=107  Identities=12%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-Cc--ceee-eecC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KM--IEFG-EYKG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~f--lE~~-~~~g  184 (264)
                      .+.+|+|+|++||||||+++.|++....                       .+++.+.+...+..+ ..  .++. ....
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~-----------------------~~i~~D~~~~~~~~~~~~~~~~~~~~~~~   60 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRL-----------------------PLLSKDAFKEVMFDGLGWSDREWSRRVGA   60 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTC-----------------------CEEEHHHHHHHHHHHHCCCSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC-----------------------eEecHHHHHHHHHHhcCccchHHHHHhhH
Confidence            3579999999999999999999876321                       122222332221110 00  0000 0011


Q ss_pred             ceecCCHHHHHHHHHcCCeEEEEcCHH------HHHHHhcCCCCc-EEEEEeCCChHHHHHH
Q psy14166        185 HLYGTSSDSVLELVNSGRVAVLNPAYQ------SLKVLRSPAFKP-LVLFIAPPPFAALKES  239 (264)
Q Consensus       185 ~~YGt~~~si~~vl~~Gki~vld~~~~------~~~~Lr~~~~~p-~vIfI~pps~e~l~~~  239 (264)
                      ..|....+.+..+++.|..+|+|....      .+..|......| .+||+++| .+++.++
T Consensus        61 ~~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R  121 (193)
T 2rhm_A           61 TAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVER  121 (193)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Confidence            123333445667788999999998762      122244433344 68999986 5666543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.52  E-value=4.6e-08  Score=85.23  Aligned_cols=117  Identities=14%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcc-eeee---ecC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMI-EFGE---YKG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~fl-E~~~---~~g  184 (264)
                      .+.+|+|.||+||||||+++.|.+....  +..+ .+|+.|...+.         .+.+...+.++..+ ...+   +..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~~a   92 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLFAA   92 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            5689999999999999999999998653  2333 35566543211         13344444443321 1000   011


Q ss_pred             ceecCCHHHHHHHHHcCCeEEEE----------c-----CHHHHHHHh---cCCCCc-EEEEEeCCChHHHHH
Q psy14166        185 HLYGTSSDSVLELVNSGRVAVLN----------P-----AYQSLKVLR---SPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       185 ~~YGt~~~si~~vl~~Gki~vld----------~-----~~~~~~~Lr---~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      +.+....+.|...+++|+++|+|          +     +...+..|.   ...+.| .+||++.| .+.+.+
T Consensus        93 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~  164 (229)
T 4eaq_A           93 SRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRE  164 (229)
T ss_dssp             HHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence            11111112345677899999999          3     444333333   233444 58899987 455554

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.52  E-value=5.5e-07  Score=74.05  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+|+|+|++||||||+++.|++..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.50  E-value=1.1e-07  Score=77.67  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC------CcceeeeecC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG------KMIEFGEYKG  184 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~------~flE~~~~~g  184 (264)
                      .+|+|+|++||||||+++.|.+....                      +.+++.+.+...+...      .|...+  ..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~--~~   58 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKK--EG   58 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCGGGCCCCHHH--HH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCC----------------------cEEecHHHHHHHhhCCCccchhhhchhh--hh
Confidence            58999999999999999999873111                      1223333333322111      010000  01


Q ss_pred             ceecCCHHHHHHHH---HcCCeEEEEcCHH---HHHHHh----cCCCCcEEEEEeCCChHHHHH
Q psy14166        185 HLYGTSSDSVLELV---NSGRVAVLNPAYQ---SLKVLR----SPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       185 ~~YGt~~~si~~vl---~~Gki~vld~~~~---~~~~Lr----~~~~~p~vIfI~pps~e~l~~  238 (264)
                      ..+....+.+...+   +.|+.+|+|..+.   ....++    ..+....+|||.+| .+++.+
T Consensus        59 ~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~  121 (181)
T 1ly1_A           59 IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVK  121 (181)
T ss_dssp             HHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHH
Confidence            12233345567777   7899999987642   222232    33445579999975 566654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.49  E-value=1.9e-08  Score=88.21  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCc---cccccccCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKF---TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS  172 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f---~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~  172 (264)
                      +.|.....+-...++.+|+|.|++||||||+++.|.+.....+   +..+ .+||.|...+     .    -+.+.+.+.
T Consensus        11 ~~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~-----~----g~~ir~~l~   80 (227)
T 3v9p_A           11 TLEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTR-----L----GETLREILL   80 (227)
T ss_dssp             ------------CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSH-----H----HHHHHHHHH
T ss_pred             hHHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCCh-----H----HHHHHHHHH
Confidence            3444444344444678999999999999999999998764321   3333 4788874221     1    134566555


Q ss_pred             cCCcceee---eecCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHh---cCCCCc-EEEEEeC
Q psy14166        173 AGKMIEFG---EYKGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLR---SPAFKP-LVLFIAP  230 (264)
Q Consensus       173 ~~~flE~~---~~~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr---~~~~~p-~vIfI~p  230 (264)
                      ++.+-.+.   -|..+.|....+.|+..+++|+++|+|=-.               +.+..|.   ...+.| .+||++.
T Consensus        81 ~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv  160 (227)
T 3v9p_A           81 NQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDV  160 (227)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence            55422111   133444554445677888999999999432               2233332   123455 5899998


Q ss_pred             CChHHHH
Q psy14166        231 PPFAALK  237 (264)
Q Consensus       231 ps~e~l~  237 (264)
                      |. +++.
T Consensus       161 ~~-e~~~  166 (227)
T 3v9p_A          161 PP-QIAS  166 (227)
T ss_dssp             CS-SCGG
T ss_pred             CH-HHHH
Confidence            73 4443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.48  E-value=3.9e-07  Score=86.05  Aligned_cols=90  Identities=13%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+|+|+|||||||+++.|++...                       |.+++.+.+                 ..|+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~-----------------~~~~  296 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAG-----------------------YVHVNRDTL-----------------GSWQ  296 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGT-----------------------CEECCGGGS-----------------CSHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcC-----------------------cEEEccchH-----------------HHHH
Confidence            568999999999999999999987531                       334443332                 1244


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      ...+.+...+.+|..+|+|...       ..+..++..+....+||+.+| .+++.++
T Consensus       297 ~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R  353 (416)
T 3zvl_A          297 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHN  353 (416)
T ss_dssp             HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHH
Confidence            4566778888999999999662       223444555667788999775 6666543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.45  E-value=1e-07  Score=79.61  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|+|+|++||||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.43  E-value=5.7e-07  Score=74.43  Aligned_cols=117  Identities=10%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC-CCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP-KKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~-~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      ++.+|+|+|++||||||+++.|++.....+ .......|. +..    |..+    ...+...+.+|.++..    ...+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~~~~~~~~~----~~~~----~~~i~~~~~~g~~~~~----~~~~   74 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTH-LSTGDLLRSEVSS----GSAR----GKKLSEIMEKGQLVPL----ETVL   74 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEE-EEHHHHHHHHHHT----TCHH----HHHHHHHHHTTCCCCH----HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeE-EcHHHHHHHHHHc----CChH----HHHHHHHHHcCCcCCH----HHHH
Confidence            347999999999999999999997643211 111111111 001    1111    1233333444544322    1122


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHH---HHHHhcCCCC-cEEEEEeCCChHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQS---LKVLRSPAFK-PLVLFIAPPPFAALKES  239 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~---~~~Lr~~~~~-p~vIfI~pps~e~l~~~  239 (264)
                      ....+.+...++.|..+|+|+.+..   ++.+...... ..+|||.+| .+.+.++
T Consensus        75 ~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R  129 (196)
T 2c95_A           75 DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQR  129 (196)
T ss_dssp             HHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHH
Confidence            3333455555668899999975433   3333221122 379999987 5555543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.41  E-value=6e-07  Score=75.42  Aligned_cols=106  Identities=20%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT  189 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt  189 (264)
                      .++|+|+|++|||||||++.|++.....+   +            ++.++.  .......+ ..+.......     ...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~---i------------~~d~~~--~~~~~~~~-~~g~~~~~~~-----~~~   74 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPF---I------------EGDALH--PPENIRKM-SEGIPLTDDD-----RWP   74 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCE---E------------EGGGGC--CHHHHHHH-HHTCCCCHHH-----HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEE---E------------eCCcCc--chhhHHHH-hcCCCCCchh-----hHH
Confidence            46899999999999999999988742111   0            111111  11111111 1222111100     001


Q ss_pred             CHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCC-cEEEEEeCCChHHHHHH
Q psy14166        190 SSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFK-PLVLFIAPPPFAALKES  239 (264)
Q Consensus       190 ~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~-p~vIfI~pps~e~l~~~  239 (264)
                      ....+.+.+..|..+|+|+.   ......++..... ..+|||.+| .+++.++
T Consensus        75 ~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R  127 (202)
T 3t61_A           75 WLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAER  127 (202)
T ss_dssp             HHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHH
Confidence            13455666678888999965   4556666643323 478999987 5565543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.40  E-value=4.1e-07  Score=75.04  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.|+|+||+||||||+++.|++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.37  E-value=2.3e-07  Score=81.16  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+..|+|+||+||||||+++.|++.+. .....+.++.|....   .|..+    -..+...+.+|.+++....      
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~---~~~~~----g~~i~~~~~~g~~~~~~~~------   93 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAE---KKTEL----GLKIKNIINEGKLVDDQMV------   93 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTT---SSSHH----HHHHHHHHHTTCCCCHHHH------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHh---ccchH----HHHHHHHHhcCCCCcHHHH------
Confidence            457899999999999999999998753 233344455555221   11111    2356666777877664321      


Q ss_pred             CCHHHHHHHHHc---CCeEEEEcCHHHHHHHh-------cCCCCc-EEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNS---GRVAVLNPAYQSLKVLR-------SPAFKP-LVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~---Gki~vld~~~~~~~~Lr-------~~~~~p-~vIfI~pps~e~l~~~  239 (264)
                        ...+...+..   ++.+|+|+.|..+.+..       ..+..| .+|++..|. +++.++
T Consensus        94 --~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~-e~~~~R  152 (243)
T 3tlx_A           94 --LSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPD-EVLVNR  152 (243)
T ss_dssp             --HHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHHH
T ss_pred             --HHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCH-HHHHHH
Confidence              2233444433   77899998765443322       233444 688888874 555543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.37  E-value=1.2e-06  Score=71.73  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||+|||||||++.|....
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            46899999999999999999998763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.37  E-value=1.2e-06  Score=73.82  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+|+||+|||||||++.|++....    ..           ++|.++.  ....... ...+...+...... .+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~----~~-----------i~~d~~~--~~~~~~~-~~~g~~~~~~~~~~-~~~   88 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGL----EF-----------AEADAFH--SPENIAT-MQRGIPLTDEDRWP-WLR   88 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCC----EE-----------EEGGGGS--CHHHHHH-HHTTCCCCHHHHHH-HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCC----eE-----------Ecccccc--cHHHHHH-HhcCCCCCCccccc-HHH
Confidence            4589999999999999999999876421    11           1111111  0000111 11111111000000 011


Q ss_pred             CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      .....+...+..|..+|++..   ......++.......+|||.+| .+++.++
T Consensus        89 ~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~R  141 (200)
T 4eun_A           89 SLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGR  141 (200)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHH
Confidence            112233445567888888874   3455566554445678999987 6666553

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.32  E-value=4.4e-07  Score=79.88  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC----Ccc---eeee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG----KMI---EFGE  181 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~----~fl---E~~~  181 (264)
                      ++.+|+|.|++||||||+++.|.+.... .+..+..+||.|...     .+    -+.+...+..+    .+-   |..-
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t-----~~----g~~ir~~l~~~~~~~~~~~~~e~lL   95 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGT-----LL----AEKLRALVKEEHPGEELQDITELLL   95 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSS-----HH----HHHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCC-----HH----HHHHHHHHhhCCCcccCCHHHHHHH
Confidence            5689999999999999999999887542 233434678887421     11    23455554321    111   1111


Q ss_pred             ecCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHhc---CCCCc-EEEEEeCCChHHHHH
Q psy14166        182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLRS---PAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr~---~~~~p-~vIfI~pps~e~l~~  238 (264)
                      |..+.+....+.|+..+++|+++|+|=-.               +.+..|..   ..+.| .+||++.| ++++.+
T Consensus        96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~  170 (236)
T 3lv8_A           96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLE  170 (236)
T ss_dssp             HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence            22223333334567788899999999321               22233321   23455 68999987 555554

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.31  E-value=2e-07  Score=76.64  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|+|+|++||||||+++.|++..+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.29  E-value=6e-07  Score=78.77  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL  186 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~  186 (264)
                      .+..|+|+|+|||||||+++.|....+..+...-...-|......  +. .++.....+-++                +.
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~-~~~g~~~~~~~~----------------~~   93 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQ-QEYGKDSVEYTK----------------DF   93 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHH-TTCSSTTHHHHH----------------HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHH-HHcCchHHHHhh----------------HH
Confidence            457899999999999999999998764211111111111110000  00 000000000010                00


Q ss_pred             ecCC-HHHHHHHHHcCCeEEEEcCHH-------HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        187 YGTS-SDSVLELVNSGRVAVLNPAYQ-------SLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       187 YGt~-~~si~~vl~~Gki~vld~~~~-------~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .|.. ...+..+++.|..+|+|..+.       ..+.++..+...++||+..| .+.+.+
T Consensus        94 ~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~-~e~~~~  152 (253)
T 2p5t_B           94 AGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK-PELSYL  152 (253)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHH
Confidence            1111 234455677888899998753       24556667777888899886 544433

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.29  E-value=4.5e-07  Score=78.41  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCccee---ee---e
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF---GE---Y  182 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~---~~---~  182 (264)
                      ++.+|+|.|++||||||+++.|.+..... +..+ .+||.|...     .+    -+.+...+.++...+.   .+   |
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v-~~~~~p~~~-----~~----g~~i~~~l~~~~~~~~~~~~~~llf   73 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV-QLTREPGGT-----PL----AERIRELLLAPSDEPMAADTELLLM   73 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE-EEEESSCSS-----HH----HHHHHHHHHSCCSSCCCHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc-ccccCCCCC-----HH----HHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            46899999999999999999998875432 2333 467877421     11    1345555554431111   10   1


Q ss_pred             cCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHhc---CCCCc-EEEEEeCCChHHHHH
Q psy14166        183 KGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLRS---PAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       183 ~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr~---~~~~p-~vIfI~pps~e~l~~  238 (264)
                      ..+.+..-.+.|+..+++|+++|+|=-.               +.+..|..   ..+.| .+||++.| ++++.+
T Consensus        74 ~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~  147 (213)
T 4edh_A           74 FAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLA  147 (213)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence            1111222224466678899999998432               22222321   23455 58999987 666655

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=1.1e-06  Score=74.01  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.|+|+||+|||||||++.|++..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4799999999999999999999764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.26  E-value=4.9e-06  Score=68.09  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=19.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+|+|+|++||||||+++.|++...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            357899999999999999999987753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.24  E-value=3e-07  Score=77.27  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|+|+|++||||||+++.|++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.24  E-value=1.3e-06  Score=72.54  Aligned_cols=23  Identities=39%  Similarity=0.704  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+++|+||+|||||||++.|+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            68999999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.23  E-value=6.9e-06  Score=68.65  Aligned_cols=118  Identities=13%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      ...+|+|+|++||||||+++.|++.+.. .........|...  +..|..+    .+.+...+.+|.+...    ...+.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~-~~i~~d~~~~~~~--~~~~~~~----~~~i~~~~~~g~~~~~----~~~~~   82 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF-VHLSAGDLLRAEQ--GRAGSQY----GELIKNCIKEGQIVPQ----EITLA   82 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSC-EEEEHHHHHHHHH--HSTTCSC----HHHHHHHHHTTCCCCH----HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCc-eEEeHHHHHHHHH--hccCCHH----HHHHHHHHHcCCcCCH----HHHHH
Confidence            4578999999999999999999987532 1111111111100  0011111    1233333444443321    11122


Q ss_pred             CCHHHHHHHHHcC-CeEEEEcCHH---HHHHHhcCC-CCcEEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSG-RVAVLNPAYQ---SLKVLRSPA-FKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~G-ki~vld~~~~---~~~~Lr~~~-~~p~vIfI~pps~e~l~~  238 (264)
                      ...+.+..+++.| ..+|+|+.+.   ....+.... ....+|||.+|. +.+.+
T Consensus        83 ~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~  136 (203)
T 1ukz_A           83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPE-DIMLE  136 (203)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCH-HHHHH
T ss_pred             HHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH-HHHHH
Confidence            2234556677777 4778887642   222333211 134789999984 44433

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.22  E-value=1.4e-06  Score=73.76  Aligned_cols=110  Identities=18%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      .|+|+||+||||||+++.|++.+.- .......+.|.....   +.+    ....+...+..+.++...        ...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~-~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~~--------~~~   65 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGI-PHISTGDMFRAAMKE---ETP----LGLEAKSYIDKGELVPDE--------VTI   65 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSC-CEEEHHHHHHHHHHT---TCH----HHHHHHHHHTTTCCCCHH--------HHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-cEEeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHH--------HHH
Confidence            4899999999999999999887642 122222333332111   111    112334444455544321        111


Q ss_pred             HHHHHHHHc---CCeEEEEcCH---HHHHHHh----cCCCCc-EEEEEeCCChHHHHH
Q psy14166        192 DSVLELVNS---GRVAVLNPAY---QSLKVLR----SPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       192 ~si~~vl~~---Gki~vld~~~---~~~~~Lr----~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      ..+.+.+..   ++.+|+|..|   +....+.    ..+..| .+|||.+|. +++.+
T Consensus        66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~  122 (216)
T 3dl0_A           66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLME  122 (216)
T ss_dssp             HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHH
T ss_pred             HHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHH
Confidence            333444433   7789999654   3333332    244455 799999985 45544

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.21  E-value=8.6e-08  Score=81.92  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..|+|+||+||||||+++.|++.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.20  E-value=1.6e-06  Score=72.41  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+|+|+|++||||||+++.|++...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.18  E-value=1.5e-06  Score=73.42  Aligned_cols=110  Identities=19%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS  191 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~  191 (264)
                      .|+|+||+||||||+++.|++.+.. .......+.|....+   +.+    ....+...+..+.++...        ...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~-~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~~--------~~~   65 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI-PHISTGDMFRAAIKN---GTE----LGLKAKSFMDQGNLVPDE--------VTI   65 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC-CEEEHHHHHHHHHHT---TCH----HHHHHHHHHHHTCCCCHH--------HHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-cEeeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHH--------HHH
Confidence            5889999999999999999876531 112222333332111   111    112344444555554321        112


Q ss_pred             HHHHHHHH---cCCeEEEEcCH---HHHHHHh----cCCCCc-EEEEEeCCChHHHHH
Q psy14166        192 DSVLELVN---SGRVAVLNPAY---QSLKVLR----SPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       192 ~si~~vl~---~Gki~vld~~~---~~~~~Lr----~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      ..+.+.+.   .+..+|+|..|   +..+.+.    ..+..| .+|||.+|. +.+.+
T Consensus        66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~-e~~~~  122 (216)
T 3fb4_A           66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQ-EELMK  122 (216)
T ss_dssp             HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHH
T ss_pred             HHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHH
Confidence            33444443   37789999654   3333332    244455 799999984 55544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.16  E-value=4.1e-06  Score=67.09  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+||+||||||+++.| ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            47999999999999999999 543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.15  E-value=4e-06  Score=67.63  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+|++||||||+++.|++..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.14  E-value=2.6e-06  Score=75.72  Aligned_cols=106  Identities=17%  Similarity=0.261  Sum_probs=57.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeec---Ccee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYK---GHLY  187 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~---g~~Y  187 (264)
                      .+|+|+|++||||||+++.|.+..+.                      +.+++.+.+...+....--+...+.   ...+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~   60 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKKEGIV   60 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCCC---CCHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCC----------------------cEEecccHHHHHhccCCcccccccchhhhhHH
Confidence            58999999999999999999975321                      2233333333322110000000000   0000


Q ss_pred             -cCCHHHHHHHH---HcCCeEEEEcCH---HHHHHHh----cCCCCcEEEEEeCCChHHHHHH
Q psy14166        188 -GTSSDSVLELV---NSGRVAVLNPAY---QSLKVLR----SPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       188 -Gt~~~si~~vl---~~Gki~vld~~~---~~~~~Lr----~~~~~p~vIfI~pps~e~l~~~  239 (264)
                       ....+.+...+   +.|..+|+|..+   .....++    ..+....+|||.+| .+++.++
T Consensus        61 ~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R  122 (301)
T 1ltq_A           61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKR  122 (301)
T ss_dssp             HHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHH
Confidence             01123456667   788999999854   2233332    33445579999985 6666543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.11  E-value=7.9e-06  Score=67.63  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+|++||||||+++.|++.+
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.11  E-value=5.4e-06  Score=68.14  Aligned_cols=26  Identities=31%  Similarity=0.575  Sum_probs=23.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.|+|+|++||||||+++.|++..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.09  E-value=6.8e-06  Score=67.96  Aligned_cols=26  Identities=31%  Similarity=0.357  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+|++||||||+++.|+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.08  E-value=2.3e-06  Score=72.65  Aligned_cols=26  Identities=27%  Similarity=0.167  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+|++||||||+++.|.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45899999999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.06  E-value=2.5e-05  Score=65.32  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..|+|+|++||||||+++.|++.+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.06  E-value=9.8e-06  Score=69.51  Aligned_cols=106  Identities=20%  Similarity=0.277  Sum_probs=60.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccC----CCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT----RPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TT----R~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      .|+|+|++||||||+++.|++.+.  +  .+ ..|    |.+..+   |..+    ...+...+.+|.++...       
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg--~--~~-i~~dd~~r~~~~~---~~~~----g~~i~~~~~~g~~~~~~-------   62 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS--L--AH-IESGGIFREHIGG---GTEL----GKKAKEFIDRGDLVPDD-------   62 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--C--EE-EEHHHHHHHHTTT---TCHH----HHHHHHHHTTTCCCCHH-------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--C--eE-EchHHHHHHHHHc---CCHH----HHHHHHHHHcCCcCcHH-------
Confidence            689999999999999999998643  1  11 122    333211   1111    12344444445443210       


Q ss_pred             cCCHHHHHHHHHc--CCeEEEEcCHHH---HHHH----hcCCCCc-EEEEEeCCChHHHHH
Q psy14166        188 GTSSDSVLELVNS--GRVAVLNPAYQS---LKVL----RSPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       188 Gt~~~si~~vl~~--Gki~vld~~~~~---~~~L----r~~~~~p-~vIfI~pps~e~l~~  238 (264)
                       .-...+...+++  |+.+|+|+.+..   ++.|    ...+..| .+||+..| .+.+.+
T Consensus        63 -~~~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~  121 (223)
T 2xb4_A           63 -ITIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKN  121 (223)
T ss_dssp             -HHHHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHH
T ss_pred             -HHHHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHH
Confidence             112446666777  999999975532   3333    2334445 68999987 455544

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.02  E-value=1e-05  Score=79.21  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC-cceeeeecCcee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK-MIEFGEYKGHLY  187 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~-flE~~~~~g~~Y  187 (264)
                      .+.+|+|+|++||||||+++.|.+....                  .|..+.+++.+.+...+..+. |-+ .+... .+
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~------------------~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~-~l  430 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQA------------------RGRKVTLLDGDVVRTHLSRGLGFSK-EDRIT-NI  430 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------TTCCEEEECHHHHHHHTCTTCCSSH-HHHHH-HH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhh------------------cCCeEEEECchHhhhhhcccccccH-HHHHH-HH
Confidence            4678999999999999999999876321                  245667777776655432211 111 00011 11


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCH---HHHHHHhcC--CCCcEEEEEeCCChHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAY---QSLKVLRSP--AFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~---~~~~~Lr~~--~~~p~vIfI~pps~e~l~~~  239 (264)
                      ......+..+++.|..+|+|...   .....++..  .....+|||++| .+++.++
T Consensus       431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~R  486 (546)
T 2gks_A          431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEER  486 (546)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHH
Confidence            21123455677899999999532   223333321  123489999986 5555543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.00  E-value=1.2e-05  Score=71.21  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.|+|+|++|||||||++.|++..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999999853

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.99  E-value=2.9e-06  Score=71.15  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+|++||||||+++.|++..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.99  E-value=1.9e-05  Score=68.20  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      +.+|+|.|++||||||+++.|.+..... +...-.+||.|.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~   42 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPG   42 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCC
Confidence            5899999999999999999998875321 221125778874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.98  E-value=1.2e-05  Score=67.60  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||||||||||++.|+...
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.95  E-value=2.2e-05  Score=65.16  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+..|+|+|++||||||+++.|++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999987

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.95  E-value=4.8e-06  Score=68.30  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++|+|+|++||||||+++.|++..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.94  E-value=2.9e-05  Score=62.67  Aligned_cols=23  Identities=26%  Similarity=0.186  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|++||||||+++.|.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.92  E-value=7.3e-06  Score=72.14  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.+|+|+|++||||||+++.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.88  E-value=1.9e-05  Score=64.79  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..|+|+|++||||||+++.|++..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.87  E-value=2.6e-06  Score=71.89  Aligned_cols=125  Identities=17%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC-Ccccccc--ccC-CC----CCCCCCCCcceee--cCHHHHHHHH----HcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD-KFTQVTP--YTT-RP----KKPGEEDGKEYHF--VSHETMTSLI----SAG  174 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~-~f~~~v~--~TT-R~----~r~gE~~G~dY~f--vs~~~f~~~i----~~~  174 (264)
                      .+.+|+|+|++|||||||++.|....+. .....+.  ... ++    ...+...+.+|++  ++.+.+.+.+    ..+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~  100 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS  100 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence            4689999999999999999999875321 1111110  111 11    0112222223222  4555665443    123


Q ss_pred             CcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHH
Q psy14166        175 KMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK  237 (264)
Q Consensus       175 ~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~  237 (264)
                      ..+....|.-. ++.... ....+..+.++|+++.......+.  .+...+|||.+|....++
T Consensus       101 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~--~~~d~~i~v~~~~~~~~~  159 (201)
T 1rz3_A          101 HQLTLPFYDHE-TDTHSK-RTVYLSDSDMIMIEGVFLQRKEWR--PFFDFVVYLDCPREIRFA  159 (201)
T ss_dssp             SEEEEEEEETT-TTEEEE-EEEECTTCSEEEEEETTTTSTTTG--GGCSEEEEECCC------
T ss_pred             CccccCceecc-CCCCCC-ceEEeCCCcEEEEechhhccHHHH--hhcCEEEEEeCCHHHHHH
Confidence            33333333211 111100 001123577899998763322221  234589999998644433

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.87  E-value=5.6e-08  Score=87.75  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=18.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.+|+|.||+|||||||++.|.+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.87  E-value=2.1e-05  Score=64.48  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+|+|+|++||||||+++.|++..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.83  E-value=3e-05  Score=63.67  Aligned_cols=24  Identities=38%  Similarity=0.549  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+|++||||||+++.|++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999999863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.80  E-value=5.3e-05  Score=65.71  Aligned_cols=26  Identities=15%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++++|+|+||+||||+|+++.|++.+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.79  E-value=3e-05  Score=63.57  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|++||||||+++.|++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.78  E-value=6.1e-05  Score=63.91  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..|+|+|++||||||+++.|++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.78  E-value=3.3e-08  Score=83.31  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|+|+|++||||||+++.|++.+.
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.77  E-value=4.8e-05  Score=64.68  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..|+|+|++||||||+++.|++.+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.76  E-value=3.3e-05  Score=62.47  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++|+|+|++||||||+++.|++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.69  E-value=8.1e-05  Score=60.99  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+|++||||||+++.|....
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998863

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.68  E-value=5.9e-05  Score=75.08  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|+|+|++||||||+++.|.+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.67  E-value=0.0001  Score=71.65  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCc-ceeeeecCc-e
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKM-IEFGEYKGH-L  186 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~f-lE~~~~~g~-~  186 (264)
                      .+.+|+|+|.+|+||||+++.|+.....                  .+.+...++.+++........- .++..-.+. .
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~------------------~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~   95 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNW------------------IGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEA   95 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH------------------TTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh------------------cCCCeEEecccHHHHHhccCCccccccCcccHHH
Confidence            3468999999999999999999876321                  1222223344444443322210 000000000 0


Q ss_pred             ecCC-------HHHHHHHH--HcCCeEEEEcCH---HH----HHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        187 YGTS-------SDSVLELV--NSGRVAVLNPAY---QS----LKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       187 YGt~-------~~si~~vl--~~Gki~vld~~~---~~----~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      +...       .+.+...+  +.|.++|+|...   ..    .+.++..++..++|++.+|+.+.++++.
T Consensus        96 ~~~re~~~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri  165 (520)
T 2axn_A           96 MKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI  165 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence            0000       11122233  578899999764   22    2334444556677888888888776543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.66  E-value=7.9e-05  Score=61.25  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+.+++|+||||||||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            46899999999999999999754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.62  E-value=0.0001  Score=63.13  Aligned_cols=107  Identities=18%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccc--cCCCCCCCCC-CCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPY--TTRPKKPGEE-DGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~--TTR~~r~gE~-~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      +|+|+||+||||+|+++.|++.+.  +.. ++.  .=|.    ++ .+.+.    -......+.+|.++...        
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~-istGdllR~----~i~~~t~l----g~~~~~~~~~G~lvpd~--------   62 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG--FVH-ISTGDILRE----AVQKGTPL----GKKAKEYMERGELVPDD--------   62 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CEE-EEHHHHHHH----HHHHTCHH----HHHHHHHHHHTCCCCHH--------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CeE-EcHHHHHHH----HHHhcChh----hhhHHHHHhcCCcCCHH--------
Confidence            588999999999999999998753  111 100  0000    00 00000    01223334455543211        


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHH-------HhcCCCCc-EEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKV-------LRSPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~-------Lr~~~~~p-~vIfI~pps~e~l~~  238 (264)
                      .-.+-+.+.+.+..-.|||+-|..+.+       +...+..+ .||++..|. +++.+
T Consensus        63 iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~-e~l~~  119 (206)
T 3sr0_A           63 LIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPD-EVVIE  119 (206)
T ss_dssp             HHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHH
T ss_pred             HHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCH-HHHHH
Confidence            112334455555566899998743322       23445554 689999985 44444

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.60  E-value=6.9e-05  Score=73.72  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=59.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCC-cceeecCHHHHHHHHHcC-Ccceeeeec
Q psy14166        106 METLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDG-KEYHFVSHETMTSLISAG-KMIEFGEYK  183 (264)
Q Consensus       106 ~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G-~dY~fvs~~~f~~~i~~~-~flE~~~~~  183 (264)
                      ..+.+.+|+|+|+|||||||+++.|.+....                  .| ..+.+++.+.+...+..+ .|.+. +..
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~------------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~  452 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQ------------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRH  452 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHH------------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHH
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcc------------------cCCceEEEECcHHHHHHhccccCCChh-HHH
Confidence            3345678999999999999999999886421                  01 233444444443321110 01000 000


Q ss_pred             CceecCCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        184 GHLYGTSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       184 g~~YGt~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      .+ +..-.+.+...+++|.++|++.-.       ...+.++..+ ...+|||++| ++++.++
T Consensus       453 ~~-i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R  512 (573)
T 1m8p_A          453 TN-IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQS  512 (573)
T ss_dssp             HH-HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHH
T ss_pred             HH-HHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHH
Confidence            00 000012445566789888887532       1222233222 2478999987 6666554

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.58  E-value=4.5e-05  Score=68.07  Aligned_cols=25  Identities=36%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+|++||||||+++.|...
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~l   98 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKNL   98 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999999853

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.57  E-value=0.00014  Score=62.06  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..|+|+|++||||||+++.|++...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.57  E-value=7.2e-05  Score=63.29  Aligned_cols=23  Identities=13%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|++||||||+++.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.54  E-value=4e-05  Score=63.12  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|||||||++.|++.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4689999999999999999999886

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.47  E-value=2.2e-05  Score=65.72  Aligned_cols=94  Identities=13%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC--Ccc-eeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED--GKE-YHFVSHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~--G~d-Y~fvs~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      +.++|+|+||||||||++.|+...+. .+..+..+++.++..+++  |.| |+|++ ..+....- ....++..+. ..|
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~i-~~~~~~~~~~-~~~   82 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTIV-ASQQRWALMT-ETP   82 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEEE-ECSSEEEEEE-ECS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceeec-ccchhheeee-ecc
Confidence            68999999999999999999986432 233444555666554444  444 44432 11100000 0112333322 247


Q ss_pred             cCCHHHHHHHHHcC-----CeEEEEc
Q psy14166        188 GTSSDSVLELVNSG-----RVAVLNP  208 (264)
Q Consensus       188 Gt~~~si~~vl~~G-----ki~vld~  208 (264)
                      ++....++++++.-     .+++++.
T Consensus        83 ~~~~~~L~~ll~r~~~~~~D~ilIEg  108 (174)
T 1np6_A           83 DEEELDLQFLASRMDTSKLDLILVEG  108 (174)
T ss_dssp             SSCCCCHHHHHHHSCGGGCSEEEEES
T ss_pred             CCchhhHHHHHHhcCCCcchHHHHHH
Confidence            77666667766431     3455554

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.46  E-value=0.00035  Score=59.62  Aligned_cols=114  Identities=14%  Similarity=0.243  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC-
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT-  189 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt-  189 (264)
                      +.|+|-|+.||||||+++.|.+.....  ..+ ..||.|...     ..    -+.+.+.+.++.-+.... .-.+|-. 
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~--~~v-~~~~eP~~t-----~~----g~~ir~~l~~~~~~~~~~-~~lLf~a~   69 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKD--YDV-IMTREPGGV-----PT----GEEIRKIVLEGNDMDIRT-EAMLFAAS   69 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTT--SCE-EEEESSTTC-----HH----HHHHHHHHHSSCCCCHHH-HHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCC--CCE-EEeeCCCCC-----hH----HHHHHHHHhcccCCCHHH-HHHHHHHH
Confidence            689999999999999999998865321  222 356766321     11    123333333322110000 0001111 


Q ss_pred             ----CHHHHHHHHHcCCeEEEEcCHH---------------HHHHHh---cCCCCc-EEEEEeCCChHHHHH
Q psy14166        190 ----SSDSVLELVNSGRVAVLNPAYQ---------------SLKVLR---SPAFKP-LVLFIAPPPFAALKE  238 (264)
Q Consensus       190 ----~~~si~~vl~~Gki~vld~~~~---------------~~~~Lr---~~~~~p-~vIfI~pps~e~l~~  238 (264)
                          -.+.|...+++|+++|+|=-..               .+..+.   ...+.| .+||++.| +++..+
T Consensus        70 R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~  140 (205)
T 4hlc_A           70 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRE  140 (205)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHH
Confidence                1234566788999999885432               123332   234566 68999987 555544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.46  E-value=7e-05  Score=60.62  Aligned_cols=26  Identities=35%  Similarity=0.668  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..|+|+||+|||||||++.|+....
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.45  E-value=9.6e-05  Score=65.73  Aligned_cols=27  Identities=37%  Similarity=0.533  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|+...+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.44  E-value=0.00027  Score=60.76  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+|++||||||+++.|++.
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999975

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.41  E-value=9.2e-05  Score=62.51  Aligned_cols=28  Identities=36%  Similarity=0.405  Sum_probs=24.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..+.+|+|+||||||||||++.|....+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3568999999999999999999988753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.41  E-value=8.9e-05  Score=64.59  Aligned_cols=28  Identities=32%  Similarity=0.462  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4689999999999999999999987653

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.39  E-value=0.0011  Score=56.21  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+|+|.|++||||||+.+.|++...
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.38  E-value=2e-05  Score=68.66  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      ++.+|+|.|++||||||+++.|.+......+..+..|||.|.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~   61 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG   61 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence            568999999999999999999998753202335556688875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.36  E-value=5.7e-05  Score=80.81  Aligned_cols=78  Identities=26%  Similarity=0.317  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +|..|+|+|+||||||||++.|.+.+.             |..|+  +||.|..-++.+.+...   +.+..++..++..
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYD-------------TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSC-------------CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCcc-------------CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence            468999999999999999999988753             33443  68988888888888765   4678899999998


Q ss_pred             Cc-eecC-----CHHHHHHHHH
Q psy14166        184 GH-LYGT-----SSDSVLELVN  199 (264)
Q Consensus       184 g~-~YGt-----~~~si~~vl~  199 (264)
                      .| .||.     +.+.|.++++
T Consensus      1171 eNI~~gld~~~~sd~ei~~Al~ 1192 (1321)
T 4f4c_A         1171 ENIIYGLDPSSVTMAQVEEAAR 1192 (1321)
T ss_dssp             HHHSSSSCTTTSCHHHHHHHHH
T ss_pred             HHHhccCCCCCCCHHHHHHHHH
Confidence            88 4773     4566666655

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.35  E-value=9.4e-05  Score=66.74  Aligned_cols=25  Identities=40%  Similarity=0.587  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+++|+||||||||||+|.|. ..+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            5899999999999999999999 654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.34  E-value=8.9e-05  Score=64.20  Aligned_cols=88  Identities=7%  Similarity=0.040  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCc-----ceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKM-----IEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~f-----lE~~~~~  183 (264)
                      ++.+|+|.|++||||||+++.|.+....    .+ .+||.|..+    ..+    -+.+...+.+..+     .+..-|.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~----~~-~~~~ep~~~----t~~----g~~ir~~l~~~~~~~~~~~~~llf~   70 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP----NC-KLLKFPERS----TRI----GGLINEYLTDDSFQLSDQAIHLLFS   70 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS----SE-EEEESSCTT----SHH----HHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc----cc-eEEEecCCC----ChH----HHHHHHHHHhcccCCCHHHHHHHHH
Confidence            4689999999999999999999988653    11 345655311    111    0122222222210     0000111


Q ss_pred             CceecCCHHHHHHHHHcCCeEEEEcCH
Q psy14166        184 GHLYGTSSDSVLELVNSGRVAVLNPAY  210 (264)
Q Consensus       184 g~~YGt~~~si~~vl~~Gki~vld~~~  210 (264)
                      .+.+. ..+.|...+++|+++|+|=-.
T Consensus        71 a~R~~-~~~~I~paL~~g~~VI~DRy~   96 (216)
T 3tmk_A           71 ANRWE-IVDKIKKDLLEGKNIVMDRYV   96 (216)
T ss_dssp             HHHHT-THHHHHHHHHTTCEEEEESCH
T ss_pred             HHHHH-HHHHHHHHHHcCCEEEEeccH
Confidence            11222 345788889999999998664

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.33  E-value=0.00011  Score=63.39  Aligned_cols=28  Identities=39%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p   56 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDAP   56 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999987653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.31  E-value=0.00077  Score=56.66  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+|++||||||+++.|++..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.29  E-value=0.00013  Score=61.10  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||+|||||||++.|....
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.28  E-value=9.7e-05  Score=67.23  Aligned_cols=28  Identities=32%  Similarity=0.526  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||||||||||++.|+..++.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence            5699999999999999999999987643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.28  E-value=0.00015  Score=64.25  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999988653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.27  E-value=0.00012  Score=78.50  Aligned_cols=78  Identities=18%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~  183 (264)
                      +|..++|+||||||||||++.|.+.++.             ..|+  ++|.+..-++.+.+...   +.+..++..++..
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~~-------------~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~  509 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYDV-------------LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE  509 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSCC-------------SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred             CCcEEEEEecCCCcHHHHHHHhcccccc-------------ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence            5699999999999999999999988642             2332  57877777777777665   3678889999988


Q ss_pred             Cce-ecC---CHHHHHHHHH
Q psy14166        184 GHL-YGT---SSDSVLELVN  199 (264)
Q Consensus       184 g~~-YGt---~~~si~~vl~  199 (264)
                      +|. ||.   +.+.+.++.+
T Consensus       510 eNI~~g~~~~~~~~v~~a~~  529 (1321)
T 4f4c_A          510 ENISLGKEGITREEMVAACK  529 (1321)
T ss_dssp             HHHHTTCTTCCHHHHHHHHH
T ss_pred             HHHhhhcccchHHHHHHHHH
Confidence            884 774   3455555544

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.27  E-value=0.0017  Score=56.29  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+|+|.|++||||||+++.|++..
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.26  E-value=0.00013  Score=68.96  Aligned_cols=56  Identities=29%  Similarity=0.456  Sum_probs=36.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETM  167 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f  167 (264)
                      ..|+|+|++|||||||+|+|+..... +....+.|||.+..+.  .+|.++.++|...+
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~  238 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL  238 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence            57999999999999999999986531 3445678899887654  46777777765433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.26  E-value=0.00016  Score=64.72  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            5689999999999999999999987653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.26  E-value=0.00018  Score=59.07  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...|
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            468999999999999999999998765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.25  E-value=0.00017  Score=63.59  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.25  E-value=0.00017  Score=63.25  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999988653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00018  Score=62.83  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   58 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.24  E-value=0.00018  Score=62.32  Aligned_cols=28  Identities=14%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELEP   60 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            5689999999999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=0.00023  Score=63.97  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+++|+||||||||||+|.|+...+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            58999999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.23  E-value=0.00022  Score=66.58  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|....+.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            5699999999999999999999987643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.23  E-value=0.00018  Score=63.87  Aligned_cols=28  Identities=43%  Similarity=0.533  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            5689999999999999999999988653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.22  E-value=0.00015  Score=63.22  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|+...+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.22  E-value=0.00022  Score=69.94  Aligned_cols=26  Identities=38%  Similarity=0.397  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+|+||||||||++.|+...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            56899999999999999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.22  E-value=0.00018  Score=62.04  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p   61 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLKP   61 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999988653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.20  E-value=0.00018  Score=62.77  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999988653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.20  E-value=0.0002  Score=63.73  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|+...+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.20  E-value=0.00019  Score=63.24  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=25.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDK  137 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~  137 (264)
                      .+.+++|+||+|+|||||++.|+...+..
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            56899999999999999999999987543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00022  Score=63.10  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p   67 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKP   67 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999988653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.18  E-value=0.00021  Score=63.18  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|+...+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            568999999999999999999998765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.18  E-value=0.0011  Score=63.19  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..|+|+|.+|||||||+++|+...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999998763

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.17  E-value=0.00022  Score=63.80  Aligned_cols=28  Identities=29%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.14  E-value=0.00025  Score=62.83  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p   59 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEP   59 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5689999999999999999999988653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.14  E-value=0.00026  Score=62.45  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   57 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRP   57 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4689999999999999999999988654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.12  E-value=0.00034  Score=58.59  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+|+|+|++|||||||++.|.+..+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.12  E-value=0.00028  Score=60.96  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.+|+|+||+|||||||++.|++.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999999954

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.11  E-value=0.00028  Score=61.88  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999986

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.11  E-value=0.00028  Score=58.83  Aligned_cols=24  Identities=21%  Similarity=0.567  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++|+||+|||||||++.|+....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.09  E-value=0.0003  Score=65.43  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence            4689999999999999999999998643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.08  E-value=0.0001  Score=67.17  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+++++|+||||||||||+|.|+....
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccccc
Confidence            358999999999999999999987653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.08  E-value=0.00035  Score=61.15  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=23.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+++|+||+|||||||++.|+...+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999998653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.07  E-value=0.00031  Score=59.26  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+||+|||||||++.|++.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.07  E-value=0.00032  Score=62.25  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|||||||++.|+..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.05  E-value=0.00031  Score=59.03  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||||||||||++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.05  E-value=0.00054  Score=63.31  Aligned_cols=28  Identities=32%  Similarity=0.551  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|||||||++.|+...+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4589999999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.04  E-value=0.00036  Score=64.78  Aligned_cols=28  Identities=32%  Similarity=0.532  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4689999999999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.04  E-value=0.00036  Score=65.44  Aligned_cols=28  Identities=39%  Similarity=0.590  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence            5689999999999999999999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.03  E-value=0.00038  Score=64.68  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence            4689999999999999999999998643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.03  E-value=0.00036  Score=62.02  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++|+||||+|||||++.|....+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.02  E-value=0.00039  Score=60.74  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||+|||||||++.|++..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.02  E-value=0.00045  Score=64.26  Aligned_cols=27  Identities=37%  Similarity=0.572  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||+|.|+...+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            357999999999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.02  E-value=0.00035  Score=63.55  Aligned_cols=27  Identities=30%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+.+|+|+||||||||||++.|....
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            356899999999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.01  E-value=0.0004  Score=64.67  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence            4689999999999999999999998653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.01  E-value=0.00037  Score=60.32  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||+|||||||++.|+...
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35799999999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.01  E-value=0.00036  Score=62.90  Aligned_cols=27  Identities=15%  Similarity=0.275  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|+...+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999999998765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.00  E-value=0.002  Score=56.32  Aligned_cols=24  Identities=17%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.+.|+||+||||+|+++.|++.+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.00  E-value=0.00041  Score=64.73  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEEP   55 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence            4689999999999999999999998653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.00  E-value=0.00041  Score=64.78  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            5689999999999999999999998653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.98  E-value=0.00044  Score=62.94  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++..++|+||||+|||||++.|+...
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            56999999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.98  E-value=0.0004  Score=61.43  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|||||||++.|+...
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            45899999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.97  E-value=0.00031  Score=60.15  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|||||||++.|+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.96  E-value=0.00039  Score=56.91  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.++|+||+|+|||||++.|+...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35899999999999999999998763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.95  E-value=0.00037  Score=55.96  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|||||||+++|...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.94  E-value=0.00047  Score=67.50  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|..++|+||||+|||||++.|...++
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.93  E-value=0.00054  Score=66.87  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        105 PMETLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       105 ~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      |.+..+.+++|+||+|+|||||++.|+...+
T Consensus        20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           20 PTPKNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3455789999999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.93  E-value=0.00046  Score=56.21  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|++|||||||++.|++..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            369999999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.92  E-value=0.00038  Score=64.41  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence            5689999999999999999999998643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.89  E-value=0.00056  Score=56.29  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+|++||||||+++.|++...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.88  E-value=0.00047  Score=64.75  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|+...+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            569999999999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.88  E-value=0.00084  Score=54.45  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP  148 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~  148 (264)
                      +..|+|+|++|||||||+++|...... +....+.||+.
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~   41 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRD   41 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceec
Confidence            367999999999999999999976421 12233445554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.88  E-value=0.00034  Score=64.77  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|+...+.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p   57 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVP   57 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5689999999999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.87  E-value=0.00071  Score=61.27  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|||||||++.|+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46899999999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.87  E-value=0.00059  Score=60.59  Aligned_cols=26  Identities=35%  Similarity=0.736  Sum_probs=24.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.+++|+||+|||||||++.|+...|
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p   55 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLLP   55 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence            58999999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.87  E-value=0.00058  Score=57.57  Aligned_cols=25  Identities=36%  Similarity=0.603  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..++|+||+|+|||||++.|+...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            3679999999999999999999865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.85  E-value=0.00059  Score=56.90  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+|+|+||+||||||+++.|+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.85  E-value=0.00036  Score=58.26  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++++|+|++|||||||+.+|+...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            689999999999999999999764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.84  E-value=0.00066  Score=55.97  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+|++||||||+++.|++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3468999999999999999999986

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.84  E-value=0.00064  Score=61.24  Aligned_cols=27  Identities=30%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..+.+|+|+||+|||||||++.|....
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.83  E-value=0.00038  Score=68.46  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||+|||||++.|...++
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            569999999999999999999998864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.82  E-value=0.00065  Score=56.50  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      ..|+|+|++||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999998

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.80  E-value=0.00064  Score=66.55  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +|..++|+||||+|||||++.|....+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            568999999999999999999998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.79  E-value=0.00046  Score=67.80  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||||||||||++.|...++
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            569999999999999999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.78  E-value=0.00042  Score=57.96  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|+|.+|||||||+++|....
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4679999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.76  E-value=0.00055  Score=58.72  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.+|+|.|++|||||||++.|...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            5689999999999999999999886

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.76  E-value=0.00059  Score=55.14  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|+||+|+|||||++.|+...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.75  E-value=0.00075  Score=60.01  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      ..|+|+|++|||||||.++|.....  +....+.+|..+..+
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~   43 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSG   43 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEE
Confidence            4689999999999999999997542  222334556655443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.74  E-value=0.0005  Score=67.28  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||+|||||++.|.+.++
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            569999999999999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.73  E-value=0.00037  Score=57.75  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..|+|+|++|||||||++.|....
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.72  E-value=0.001  Score=59.80  Aligned_cols=28  Identities=18%  Similarity=0.170  Sum_probs=24.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..+.+|+|+||||||||||++.|....+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567999999999999999999987653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.68  E-value=0.0018  Score=51.66  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +...|+|+|++|||||||+++|....
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34689999999999999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.68  E-value=0.00092  Score=60.43  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+||||||+++.|+...
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.67  E-value=0.0011  Score=55.25  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||++.|+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998854

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.67  E-value=0.00081  Score=61.78  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +..++|+||||+|||||++.|+..++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            689999999999999999999998653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.66  E-value=0.0011  Score=55.95  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      +.+|+|+|++||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.66  E-value=0.00065  Score=72.51  Aligned_cols=64  Identities=20%  Similarity=0.266  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+||||||||||++.|...++.             ..|+  ++|.+...++.......+   .++.++..++..
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~-------------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~  481 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYDP-------------LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA  481 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSCC-------------SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC-------------CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHH
Confidence            4699999999999999999999887642             2232  466666666665555432   344444445554


Q ss_pred             Cc
Q psy14166        184 GH  185 (264)
Q Consensus       184 g~  185 (264)
                      +|
T Consensus       482 eN  483 (1284)
T 3g5u_A          482 EN  483 (1284)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.66  E-value=0.0011  Score=54.67  Aligned_cols=24  Identities=50%  Similarity=0.672  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||++.|....
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            378999999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0014  Score=64.95  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=25.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        107 ETLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..+.+++|+||||+|||||++.|+...+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            44689999999999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.64  E-value=0.001  Score=54.91  Aligned_cols=24  Identities=50%  Similarity=0.672  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999999863

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.62  E-value=0.0034  Score=59.11  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM  167 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f  167 (264)
                      ...|+|+|.+|||||||+++|...... .....+.||+.....  +.+|..+.++|..-+
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~  233 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM  233 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence            357999999999999999999976421 133456788876432  346777888887665

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.61  E-value=0.00097  Score=60.93  Aligned_cols=28  Identities=18%  Similarity=0.544  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|||||||++.|+...+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3589999999999999999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.61  E-value=0.0015  Score=51.12  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|++|||||||+++|....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.60  E-value=0.0011  Score=60.77  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+++|+||+||||||+++.|+...
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.58  E-value=0.00066  Score=56.43  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.++|+|+||||||||++.|+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5899999999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.56  E-value=0.0015  Score=52.22  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..++|+||+|+|||+|++.++...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.56  E-value=0.0017  Score=52.79  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...|+|+|++|||||||+++|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999999876

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.56  E-value=0.001  Score=54.23  Aligned_cols=22  Identities=23%  Similarity=0.635  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.55  E-value=0.0017  Score=55.48  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ...|+|+|++|||||||++.|.....
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            35799999999999999999998653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.55  E-value=0.0016  Score=55.78  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..|+|+|++||||||+++.|++.+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.52  E-value=0.003  Score=59.75  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHET  166 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~  166 (264)
                      ...|+|+|.+|||||||.|+|...... .....+.+||....+  +..+..+..+|...
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G   80 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG   80 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence            368999999999999999999876321 112345567665432  33455566665443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.52  E-value=0.0014  Score=60.03  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+|+||||||||||++.|....
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.51  E-value=0.0016  Score=56.47  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..+|+|+|++||||||+++.|.+...
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35899999999999999999998643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.51  E-value=0.0011  Score=61.48  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=24.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      +.|+|+|++|||||||+|.|.....  .....+.||+.+..+
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~  219 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRY  219 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEE
Confidence            4599999999999999999997643  223445677766443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.50  E-value=0.0016  Score=63.36  Aligned_cols=27  Identities=26%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            569999999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.49  E-value=0.0017  Score=52.31  Aligned_cols=24  Identities=38%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++||||||+++.|++..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.49  E-value=0.0027  Score=51.30  Aligned_cols=26  Identities=19%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      --|+|+|++|||||||++.|...++.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhccc
Confidence            46899999999999999988876654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.46  E-value=0.0019  Score=53.74  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.+++|+||+|+|||||+..|+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999987

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.46  E-value=0.0019  Score=58.16  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      ..-.|+|+|.+|||||||+|+|...... .....+.|||...
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~   49 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRV   49 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEE
Confidence            4468999999999999999999976421 1233456777643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.46  E-value=0.0019  Score=54.61  Aligned_cols=25  Identities=12%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||+..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5689999999999999999999874

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.45  E-value=0.0016  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|||||||+++|...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.45  E-value=0.0036  Score=50.50  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||+++|....
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            579999999999999999999765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.45  E-value=0.0019  Score=54.00  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++.++|.||+|+|||+|++.|+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0016  Score=62.30  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|||||||++.|+...
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            56899999999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.42  E-value=0.0016  Score=60.41  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+||||||+++.|+...
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            56899999999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.41  E-value=0.0014  Score=62.37  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCCe--EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRP--VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~--ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|.+  ++|+||||+|||||++.|++..
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            4578  9999999999999999999873

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.41  E-value=0.0019  Score=56.49  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+|+|+||+|||||||++.|++.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.41  E-value=0.0017  Score=55.91  Aligned_cols=27  Identities=33%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++.|+|+||||+|||||+..|++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            357899999999999999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.41  E-value=0.0038  Score=58.72  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM  167 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f  167 (264)
                      ..|+|+|.+|||||||.|+|...... .....+.+||....+  +.+|..+.++|...+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~   61 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI   61 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCC
Confidence            47999999999999999999876432 123456677765432  345666777775544

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.40  E-value=0.0015  Score=59.12  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++++|+|++|||||||++.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            589999999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.39  E-value=0.0022  Score=53.03  Aligned_cols=24  Identities=38%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++|+|+|++||||||+++.|++..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            389999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.39  E-value=0.0017  Score=60.20  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||+|||||||++.|+...+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            458999999999999999999998643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.39  E-value=0.0019  Score=57.04  Aligned_cols=26  Identities=19%  Similarity=0.205  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|+|||||++.|+...
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999988763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.38  E-value=0.001  Score=59.73  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK  149 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~  149 (264)
                      ..|+|+|++|||||||+++|...... .....+.|||..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~   46 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHR   46 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceee
Confidence            58999999999999999999976311 012235577754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.38  E-value=0.0022  Score=54.21  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             hhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        100 VAKLYPMETLRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       100 v~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.++|+.......|+|+|++|||||||+++|...
T Consensus        19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3344443334568999999999999999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.37  E-value=0.0019  Score=59.17  Aligned_cols=25  Identities=32%  Similarity=0.309  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|||||||++.|+..
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5689999999999999999999865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.35  E-value=0.0024  Score=59.98  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      .+..++|+|++|||||||.|.|...... -....|.||+.|..|
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-~~~~~p~tTi~p~~G   61 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEA   61 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcc-cccCCCceeecceee
Confidence            4579999999999999999999985421 123346677777654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.35  E-value=0.0018  Score=51.86  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...++|+||+|+|||+|++.++...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.34  E-value=0.002  Score=52.47  Aligned_cols=24  Identities=17%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+|+||+|+|||||++.|.-..
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            399999999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.34  E-value=0.0021  Score=50.16  Aligned_cols=23  Identities=35%  Similarity=0.647  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.33  E-value=0.002  Score=59.69  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+++|+||+|||||||++.|+...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3699999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.32  E-value=0.0029  Score=58.11  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +..|+|+|++|||||||+|.|...
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            578999999999999999999974

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.31  E-value=0.0023  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.31  E-value=0.0022  Score=62.51  Aligned_cols=28  Identities=21%  Similarity=0.472  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||+|||||||++.|+...+.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5799999999999999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.30  E-value=0.0021  Score=51.01  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEECCCCccHHHHHHHHhcCC
Confidence            368999999999999999998653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0012  Score=61.86  Aligned_cols=53  Identities=23%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHE  165 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~  165 (264)
                      -.|+|+|.++||||||.|.|....+.  ....|.||+.|-.|.  .+|..+.|+|-.
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~~~~~i~l~D~p  127 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRYKGAKIQMLDLP  127 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEETTEEEEEEECG
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEeCCcEEEEEeCC
Confidence            47999999999999999999987653  345678999886653  345556666543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.28  E-value=0.0024  Score=50.81  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..-|+|+|++|||||||+++|...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357899999999999999999876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.28  E-value=0.0022  Score=60.59  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..++|+||+|||||||+|.|....+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3899999999999999999998654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.28  E-value=0.0021  Score=62.28  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.+++|+||+|||||||++.|+...
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHh
Confidence            56899999999999999999999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.27  E-value=0.0025  Score=63.01  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..+.+++|+||+|+|||||++.|+...+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            3679999999999999999999998754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.27  E-value=0.0024  Score=57.91  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..++|+||+|+|||||++.|+...
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            679999999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.26  E-value=0.0024  Score=56.61  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      -++|+||+|+|||||++.|+....
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcC
Confidence            399999999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.24  E-value=0.0027  Score=54.65  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-++|+||+|+|||||++.|+....
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3499999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.24  E-value=0.0029  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++|.||+|+|||+|++.|+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.24  E-value=0.0031  Score=56.68  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=27.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK  149 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~  149 (264)
                      ..|+|+|.+|||||||+|+|...... .....+.|||..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~   45 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKR   45 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEE
Confidence            46999999999999999999976421 112345677754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.23  E-value=0.0025  Score=49.61  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .|+|+|++|||||||++.|...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.23  E-value=0.0027  Score=54.72  Aligned_cols=25  Identities=24%  Similarity=0.612  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.++|+||+|+|||||++.|+....
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999998743

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.22  E-value=0.0027  Score=49.83  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.21  E-value=0.003  Score=61.51  Aligned_cols=28  Identities=18%  Similarity=0.536  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||+|+|||||++.|+...+.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5699999999999999999999998653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0027  Score=49.98  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.21  E-value=0.0028  Score=49.55  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.19  E-value=0.003  Score=59.03  Aligned_cols=26  Identities=27%  Similarity=0.430  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.++|+||+|+|||||++.|+...
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46899999999999999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.19  E-value=0.0029  Score=49.82  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.18  E-value=0.0029  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.18  E-value=0.0027  Score=49.94  Aligned_cols=23  Identities=43%  Similarity=0.654  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.18  E-value=0.0032  Score=54.05  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +..|+|.|++||||||+++.|.+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            578999999999999999999988753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.17  E-value=0.0027  Score=50.13  Aligned_cols=22  Identities=45%  Similarity=0.691  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.17  E-value=0.0029  Score=50.34  Aligned_cols=24  Identities=38%  Similarity=0.643  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0036  Score=50.84  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|+|++|||||||++.|....
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999999764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.17  E-value=0.0024  Score=60.45  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|||||||++.|+...+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            457999999999999999999988743

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.17  E-value=0.0032  Score=62.30  Aligned_cols=27  Identities=19%  Similarity=0.565  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|+...+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.16  E-value=0.003  Score=50.31  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.15  E-value=0.0015  Score=57.31  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|.+|||||||.+.|....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            468999999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.15  E-value=0.003  Score=49.80  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999965

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.15  E-value=0.003  Score=61.25  Aligned_cols=28  Identities=11%  Similarity=0.357  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+..++|+||+|||||||++.|+...+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3578999999999999999999988654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.15  E-value=0.003  Score=53.25  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.+|+|+|++||||||+++.|.+.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999986

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.12  E-value=0.0032  Score=49.37  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.12  E-value=0.0034  Score=55.16  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.+++|+||+|+|||||+..|+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            5689999999999999999988864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.12  E-value=0.0023  Score=60.26  Aligned_cols=53  Identities=25%  Similarity=0.357  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSH  164 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~  164 (264)
                      +.|+|+|.+|||||||.|+|...... +....+.+||....+  +.+|..+.++|.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT   56 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDT   56 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEEC
Confidence            46999999999999999999976421 223456778876543  234555555543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.11  E-value=0.0033  Score=59.78  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||||||||++.|+...+
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            679999999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0036  Score=61.97  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=24.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +.+++|+||+|+|||||++.|+...+.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            478999999999999999999988643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.10  E-value=0.0039  Score=61.55  Aligned_cols=39  Identities=21%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      ..|+|+|++|||||||+|.|.+...   +..+++||+....+
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~~---~~~~~~tt~~~T~g   77 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKKK---GFSLGSTVQSHTKG   77 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSS---CSCCCCSSSCCCCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCCC---ccccCCCCCCceeE
Confidence            5789999999999999999998743   22667777765443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.10  E-value=0.0033  Score=50.71  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999999763

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.10  E-value=0.0037  Score=51.53  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..++|.||+|+|||||++.++...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.10  E-value=0.0033  Score=50.46  Aligned_cols=23  Identities=39%  Similarity=0.678  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.09  E-value=0.0029  Score=49.80  Aligned_cols=23  Identities=39%  Similarity=0.704  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            58999999999999999997543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.09  E-value=0.0034  Score=50.44  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.09  E-value=0.0035  Score=49.23  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999998653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.08  E-value=0.0033  Score=54.35  Aligned_cols=25  Identities=20%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|+|.+|||||||+++|+...
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.07  E-value=0.0034  Score=57.81  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..+.|+||+|+|||||++.|+....
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.05  E-value=0.0047  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ....|+|+|++|||||||+++|...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999999865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.05  E-value=0.0037  Score=49.32  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||+++|....
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.04  E-value=0.0039  Score=49.64  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.04  E-value=0.0041  Score=54.46  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-++|+||+|+|||||++.|+....
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcC
Confidence            3499999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.04  E-value=0.0042  Score=53.11  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.++|.||+|+|||+|++.|+....
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.03  E-value=0.0044  Score=54.43  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.++|.||+|+|||+|++.|+....
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            47999999999999999999998764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.03  E-value=0.015  Score=55.83  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.++|.||+|+|||+|++.|+...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3799999999999999999999875

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.03  E-value=0.0045  Score=54.62  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      ..++|+|.+|||||||+|.|....... ...+++||+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~  138 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQ  138 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceE
Confidence            379999999999999999999765422 245667777653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.02  E-value=0.0029  Score=50.35  Aligned_cols=23  Identities=39%  Similarity=0.561  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.02  E-value=0.0038  Score=50.80  Aligned_cols=24  Identities=46%  Similarity=0.666  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.01  E-value=0.0036  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.01  E-value=0.0032  Score=50.66  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            58999999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.99  E-value=0.0039  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.99  E-value=0.0027  Score=57.03  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+||+|||||||++.|...
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.99  E-value=0.0028  Score=51.54  Aligned_cols=26  Identities=15%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ....|+|+|.+|||||||+++|....
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999998653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.97  E-value=0.0049  Score=53.70  Aligned_cols=27  Identities=22%  Similarity=0.506  Sum_probs=23.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.++|.||+|+|||+|++.|+.....
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            478999999999999999999987643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.97  E-value=0.0034  Score=59.38  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|+||||||||++.|+...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36999999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.96  E-value=0.0048  Score=54.99  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.++|.||+|+|||+|++.|+....
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhC
Confidence            47899999999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.96  E-value=0.0051  Score=54.79  Aligned_cols=26  Identities=15%  Similarity=0.058  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++.++|.||+|+|||+|++.|+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678888999999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.96  E-value=0.0029  Score=55.09  Aligned_cols=27  Identities=19%  Similarity=0.197  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+|+|.|++||||||+++.|++...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            447999999999999999999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0027  Score=51.94  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.96  E-value=0.0041  Score=51.27  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|.+|||||||+++|...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.95  E-value=0.0043  Score=49.47  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999998764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.95  E-value=0.0047  Score=55.13  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      +-.++|+|.||||||||+|.|...... -....+.||+...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~  159 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQ  159 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------C
T ss_pred             CceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeE
Confidence            357999999999999999999976432 2235677887654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.94  E-value=0.0044  Score=55.71  Aligned_cols=26  Identities=27%  Similarity=0.546  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++++|+||+||||||++..|+...
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.94  E-value=0.0044  Score=49.13  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.93  E-value=0.0044  Score=49.50  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||+++|....
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            468999999999999999999753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.92  E-value=0.0044  Score=50.15  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -.|+|+|.+|||||||++.|...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.92  E-value=0.0052  Score=57.82  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      .+..|+|+|++|||||||.|.|.....  -....|.||..|..+
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g   62 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNES   62 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeE
Confidence            346799999999999999999997642  122345667666443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.92  E-value=0.0044  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.|+|+|++|||||||+++|+..
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            368999999999999999999876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.91  E-value=0.0054  Score=48.60  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|.||+|+|||+|++.|....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3689999999999999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.91  E-value=0.0066  Score=49.82  Aligned_cols=25  Identities=16%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .--|+|+|.+|||||||++.|...+
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            3579999999999999999888754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.90  E-value=0.0045  Score=50.56  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999998653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.90  E-value=0.0038  Score=60.19  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+++|+||||||||||++.|+...+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            6999999999999999999998743

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.90  E-value=0.0046  Score=49.34  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.89  E-value=0.0043  Score=50.30  Aligned_cols=24  Identities=42%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999999753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.89  E-value=0.0057  Score=50.82  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|+|++|||||||+++|....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999999764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.88  E-value=0.0052  Score=50.18  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..++|.||+|+|||+|++.++..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.88  E-value=0.0093  Score=56.74  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...++|+||+|+|||+|++.|+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999998763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.87  E-value=0.0045  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.85  E-value=0.0048  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.85  E-value=0.0044  Score=49.76  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.85  E-value=0.005  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.85  E-value=0.0052  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|+||+|+|||||+..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999998777643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.83  E-value=0.0085  Score=54.77  Aligned_cols=39  Identities=33%  Similarity=0.484  Sum_probs=28.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK  149 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~  149 (264)
                      ....|+|+|++|||||||++.|....+.  ....+.+|+..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~  204 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGI  204 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeece
Confidence            3468999999999999999999876531  12345566544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.82  E-value=0.0051  Score=49.91  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.82  E-value=0.0051  Score=50.39  Aligned_cols=24  Identities=29%  Similarity=0.612  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            478999999999999999998763

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.81  E-value=0.0029  Score=60.79  Aligned_cols=57  Identities=19%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMT  168 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~  168 (264)
                      -.|+|+|++|||||||+|+|..... .+....+.|||.....  ..+|..+.++|..-+.
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~  292 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLR  292 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCC
Confidence            3599999999999999999987632 1334567788876543  3567778888876654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.81  E-value=0.0048  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|||||||+++|...
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            57899999999999999999854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.81  E-value=0.0052  Score=54.86  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|.||+|+|||||++.|+...
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35789999999999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.79  E-value=0.005  Score=50.48  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||+++|....
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~~   47 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKNDR   47 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0051  Score=49.98  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            57899999999999999999875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.78  E-value=0.0041  Score=49.72  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.77  E-value=0.0055  Score=49.73  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .-|+|+|++|||||||+++|...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.76  E-value=0.0054  Score=50.25  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.75  E-value=0.0058  Score=51.16  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...|+|+|.+|||||||+++|+..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            368899999999999999999976

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.75  E-value=0.0048  Score=49.83  Aligned_cols=25  Identities=12%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-.|+|+|++|||||||+++|....
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.75  E-value=0.009  Score=55.55  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      ..|+|+|.+|||||||.|+|.....  .....|.||..|..+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g   42 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTG   42 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEE
Confidence            4689999999999999999998642  123345677776544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.74  E-value=0.0057  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            46899999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.74  E-value=0.0055  Score=49.94  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            368999999999999999999764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.73  E-value=0.0059  Score=49.30  Aligned_cols=24  Identities=38%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999998763

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.73  E-value=0.0059  Score=49.73  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.73  E-value=0.0069  Score=53.28  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|.||+|+|||+|++.|+...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999887653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.73  E-value=0.006  Score=48.67  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.72  E-value=0.0052  Score=49.56  Aligned_cols=25  Identities=12%  Similarity=0.404  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-.|+|+|++|||||||+++|....
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.72  E-value=0.0058  Score=55.33  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++|+|+||+||||||++..|+...
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            46799999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.72  E-value=0.0044  Score=49.63  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ....|+|+|++|||||||+++|...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999743

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.72  E-value=0.0032  Score=55.57  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|.+|||||||.|+|....
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.72  E-value=0.0035  Score=62.23  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+.+++|+||||||||||++.|+
T Consensus       347 ~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          347 LGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCCEEEEEeeCCCCHHHHHHHHH
Confidence            46899999999999999997653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.71  E-value=0.0052  Score=50.05  Aligned_cols=24  Identities=13%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.71  E-value=0.0056  Score=50.37  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            578999999999999999999764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.70  E-value=0.0059  Score=65.21  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +|..++|+||||+|||||++.|...++.
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            5689999999999999999999988643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.69  E-value=0.0057  Score=50.33  Aligned_cols=24  Identities=42%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0062  Score=49.81  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            579999999999999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.68  E-value=0.0039  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|||||||+++|...
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.66  E-value=0.0065  Score=53.13  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||.++|....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.66  E-value=0.0065  Score=49.50  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998763

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.66  E-value=0.0065  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            579999999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.64  E-value=0.007  Score=52.86  Aligned_cols=26  Identities=42%  Similarity=0.898  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..++|.||+|+|||+|++.|+....
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.62  E-value=0.0068  Score=49.86  Aligned_cols=24  Identities=42%  Similarity=0.603  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            578999999999999999998653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.60  E-value=0.0065  Score=49.22  Aligned_cols=24  Identities=13%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .-.|+|+|++|||||||+++|...
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999964

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.60  E-value=0.0073  Score=48.60  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.+|+||+|+|||||+..|.-
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.59  E-value=0.0068  Score=54.26  Aligned_cols=26  Identities=12%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|+||+|+|||||++.++...
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.59  E-value=0.0088  Score=52.53  Aligned_cols=24  Identities=38%  Similarity=0.731  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..++|+||+|+|||+|++.|+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            489999999999999999998864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.58  E-value=0.0051  Score=56.95  Aligned_cols=42  Identities=29%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC----C-ccccccccCCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD----K-FTQVTPYTTRPKKP  151 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~----~-f~~~v~~TTR~~r~  151 (264)
                      ++.++++|.+|||||||.|.|......    . -....++||+....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~  206 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID  206 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE
Confidence            368999999999999999999986311    1 12345678877543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0067  Score=50.59  Aligned_cols=23  Identities=43%  Similarity=0.635  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.57  E-value=0.0072  Score=50.03  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|||||||+++|....
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.57  E-value=0.0051  Score=50.84  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -.|+|+|++|||||||+++|...
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999999754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=95.57  E-value=0.0023  Score=61.62  Aligned_cols=53  Identities=30%  Similarity=0.391  Sum_probs=38.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSH  164 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~  164 (264)
                      -.|+|+|.+|||||||+|+|...... +....+.|||.+....  .+|..+.++|.
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~g~~~~l~DT  298 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIRGILFRIVDT  298 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEETTEEEEEEES
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecCCeEEEEEEC
Confidence            46999999999999999999987421 3345678898875432  34555555543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.56  E-value=0.0063  Score=50.21  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.55  E-value=0.0063  Score=57.51  Aligned_cols=39  Identities=26%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      +..|+|+|++|||||||++.|....|.  ....+.||..|.
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~--i~~~~ftTl~p~  195 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHPK--IAPYPFTTLSPN  195 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCE--ECCCTTCSSCCE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCcc--ccCcccceecce
Confidence            357999999999999999999887652  122344555553

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.54  E-value=0.0057  Score=50.04  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.53  E-value=0.011  Score=54.06  Aligned_cols=23  Identities=13%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..|+|+|++|||||||++.|...
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            48999999999999999999985

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.53  E-value=0.0063  Score=59.05  Aligned_cols=27  Identities=22%  Similarity=0.119  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..|+|+|.||||||||++.|++...
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999998854

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.50  E-value=0.0073  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999975

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.47  E-value=0.008  Score=54.21  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.++|.||+|+|||+|++.|+....
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            47999999999999999999998743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.47  E-value=0.0084  Score=58.24  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+..++|+||||+|||||++.|+....
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            568999999999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.46  E-value=0.0072  Score=52.56  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ....++|.||+|+|||+|++.|+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            34689999999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.46  E-value=0.0077  Score=49.85  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|++|||||||+++|....
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC
Confidence            479999999999999999999753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.46  E-value=0.0078  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.46  E-value=0.008  Score=57.94  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRL  130 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L  130 (264)
                      ++.+++|+||+|||||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            5689999999999999999994

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.45  E-value=0.0077  Score=49.96  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999865

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.44  E-value=0.01  Score=54.06  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +..++|.||+|+|||+|++.|+....
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999998753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.43  E-value=0.0095  Score=53.78  Aligned_cols=25  Identities=32%  Similarity=0.609  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.|+|.||+|+|||+|++.|+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4789999999999999999999875

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.43  E-value=0.0074  Score=56.11  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      .|+|+|++|||||||.+.|....+.  ....+.||..|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~~~--v~~~p~~Ti~pn   39 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRANAL--AANYPFATIDKN   39 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHHTT--CSSCCGGGGSTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeccc
Confidence            5899999999999999999986431  122344555543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.42  E-value=0.0077  Score=55.27  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.++.|+||+|+|||||++.|+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998775

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.42  E-value=0.0047  Score=49.58  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=9.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999854

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.42  E-value=0.012  Score=54.36  Aligned_cols=42  Identities=26%  Similarity=0.210  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC----CCCccccccccCCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD----PDKFTQVTPYTTRPKKP  151 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~----p~~f~~~v~~TTR~~r~  151 (264)
                      ++.++++|.+|+|||||.|.|....    ........+.||+....
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~  207 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE  207 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE
Confidence            3689999999999999999999861    11123346678877543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.40  E-value=0.0093  Score=53.70  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.++|+||+|+|||||++.++....
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHh
Confidence            3899999999999999999987643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.39  E-value=0.0057  Score=49.68  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|++|||||||+++|....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999999998653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.39  E-value=0.0085  Score=50.86  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -.|+|+|.+|||||||+++|...
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.37  E-value=0.011  Score=52.35  Aligned_cols=24  Identities=21%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|.+|||||||+|.|+...
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            579999999999999999999763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.36  E-value=0.0088  Score=48.60  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999975

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.35  E-value=0.01  Score=50.12  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++-|+|.|+||+|||||+-.|+..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4578999999999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.33  E-value=0.0091  Score=62.18  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .|.+++|+||+|+|||||++.|++
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            568999999999999999999984

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.33  E-value=0.012  Score=52.59  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ...++|.||+|+|||+|++.|+.....
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            367999999999999999999887543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.33  E-value=0.028  Score=53.08  Aligned_cols=57  Identities=23%  Similarity=0.267  Sum_probs=36.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM  167 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f  167 (264)
                      ...|+|+|.+|||||||+++|..... .+....+.||+.....  +.+|..+.++|..-+
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~  253 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM  253 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGT
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCC
Confidence            45789999999999999999996542 1234456677776433  345677777776553

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.29  E-value=0.01  Score=53.47  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++|+||+|+||||+++.|+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999886

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.28  E-value=0.0057  Score=60.34  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++|+||+|||||||++.|++..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999999875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.28  E-value=0.0092  Score=49.82  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.27  E-value=0.0077  Score=52.82  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|.+|+|||||+|.|....
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.27  E-value=0.0048  Score=53.31  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++|.||+|+|||+|++.|+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHh
Confidence            568999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.27  E-value=0.0057  Score=63.70  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||+|+|||||++.|.+..+
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.01  Score=49.76  Aligned_cols=24  Identities=46%  Similarity=0.671  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.24  E-value=0.01  Score=48.89  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|.+|||||||+++|....
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.24  E-value=0.011  Score=53.88  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+..|+|+|++|+|||||++.|+..
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.24  E-value=0.0089  Score=53.58  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|+||+|+|||+|++.++...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.24  E-value=0.01  Score=49.07  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|++|||||||+++|....
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCC
Confidence            368999999999999999998653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.23  E-value=0.0094  Score=48.90  Aligned_cols=23  Identities=13%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -.|+|+|++|||||||+++|...
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.23  E-value=0.011  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999999875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.20  E-value=0.0091  Score=55.90  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      .|+|+|.+|||||||.|+|.....  .....|.||+.+..+
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g   40 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVG   40 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceE
Confidence            489999999999999999987642  122345566655433

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.20  E-value=0.011  Score=55.50  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+.+++|+||||+|||||+..|+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            57899999999999999999765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.19  E-value=0.012  Score=52.68  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++-++|.||+|+|||+|++.|+....
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            36799999999999999999998743

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.18  E-value=0.013  Score=52.81  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.++|.||+|+|||+|+..|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999998865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.18  E-value=0.011  Score=54.60  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+++|+||+|+|||||++.|.
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999987

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.17  E-value=0.011  Score=48.84  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.16  E-value=0.016  Score=50.55  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|.+|+|||||++.|....
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999999754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.16  E-value=0.011  Score=48.94  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            57899999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.14  E-value=0.013  Score=50.53  Aligned_cols=25  Identities=36%  Similarity=0.705  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..|+|.||+|+|||+|++.|....+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            6899999999999999999988654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.12  E-value=0.0061  Score=48.26  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...|+|.||+|+|||++++.|....
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhC
Confidence            3679999999999999998887653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.12  E-value=0.015  Score=53.17  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ...++|+||+|+|||+|++.|+....
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            36799999999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.11  E-value=0.017  Score=51.61  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-|+|+|.+|||||||.++|....
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            568999999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.07  E-value=0.01  Score=53.24  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|+||+|+||||+++.|++.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999883

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.05  E-value=0.015  Score=53.18  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++.|+|.||+|+|||+|++.|+....
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999998754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.04  E-value=0.014  Score=52.67  Aligned_cols=25  Identities=12%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++.++|.||+|+|||+|++.++..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.04  E-value=0.013  Score=51.22  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|.+|||||||.++|....
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            468999999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.02  E-value=0.016  Score=52.95  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ....|+|+|++|||||||++.|+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999865

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.99  E-value=0.014  Score=53.35  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++-++|+|+||+||||++..|+...
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence            5789999999999999999999863

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.99  E-value=0.015  Score=50.88  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|.+|||||||+++|....
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            579999999999999999999763

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.97  E-value=0.0095  Score=56.95  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=36.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC--CCCCCcceeecCHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP--GEEDGKEYHFVSHETMT  168 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~--gE~~G~dY~fvs~~~f~  168 (264)
                      -.|+|+|++|||||||+|+|...... +...++.|||....  -..+|..+.++|...+.
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~  283 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR  283 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence            35999999999999999999976321 22344566665422  13467778888766653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.96  E-value=0.015  Score=52.92  Aligned_cols=26  Identities=15%  Similarity=0.282  Sum_probs=23.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++|+|+||+|+||||++..|+...
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.95  E-value=0.019  Score=49.92  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -.|+|+|.+|||||||++.|....
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999999764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.92  E-value=0.013  Score=58.25  Aligned_cols=19  Identities=47%  Similarity=0.611  Sum_probs=17.6

Q ss_pred             CCCeEEEEcCCCCCHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELK  127 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~  127 (264)
                      .+.+++|+||||||||||+
T Consensus        43 ~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           43 RGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHh
Confidence            5689999999999999996

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.92  E-value=0.016  Score=54.23  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.+++|+||+|+|||||++.|....
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4799999999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.92  E-value=0.0093  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=94.90  E-value=0.005  Score=56.83  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+ +++|+||+|+|||||++.|....
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            45 99999999999999999886544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.89  E-value=0.016  Score=56.85  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +..++|+||+|+|||||++.|+...+.
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            479999999999999999999988653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.88  E-value=0.015  Score=54.99  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +..++|.||+|+|||||++.|+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999998875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.85  E-value=0.0055  Score=50.00  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=4.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999865

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.85  E-value=0.019  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +++++|+||.|+||||++-.++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999998666543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=94.83  E-value=0.016  Score=59.13  Aligned_cols=25  Identities=28%  Similarity=0.487  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+++++|+||+|+|||||++.|+..
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHH
Confidence            4689999999999999999998764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.82  E-value=0.0022  Score=55.74  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+++|+||+|||||||++.|+...+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccc
Confidence            3678999999999999999988643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.80  E-value=0.017  Score=48.70  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.+|+||+|+|||||+..|.-
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHH
Confidence            6999999999999999998753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.77  E-value=0.0062  Score=50.56  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        12 ~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           12 YKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEECCTTSSHHHHHCBCTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999854

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.76  E-value=0.017  Score=52.74  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.|+|.||+|+|||+|++.|+....
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            36799999999999999999998753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=94.76  E-value=0.017  Score=58.72  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +++++|+||+|+|||||++.|+..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhh
Confidence            689999999999999999998764

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.72  E-value=0.014  Score=52.10  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=23.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ..++|.||+|+|||+|++.|+...+.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            68999999999999999999987543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.69  E-value=0.019  Score=53.41  Aligned_cols=24  Identities=29%  Similarity=0.526  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+|++|+|||||++.|+...
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            459999999999999999988753

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.68  E-value=0.022  Score=54.37  Aligned_cols=28  Identities=43%  Similarity=0.917  Sum_probs=24.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKF  138 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f  138 (264)
                      +-|+|+||+|+|||+|++.|+...+..|
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~~~   78 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANAPF   78 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence            5799999999999999999999865433

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.02  Score=54.34  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++=|+|.||+|+|||.|++.|+....
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            347799999999999999999998743

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.68  E-value=0.014  Score=53.82  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|+|||||++.|...
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4799999999999999998765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.67  E-value=0.017  Score=51.37  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|.||+|+||||+++.|+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.64  E-value=0.018  Score=49.77  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...++|.||+|+||||++..|+...
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.021  Score=54.27  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++-|+|.||||+|||.|++.|+....
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999998743

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.60  E-value=0.013  Score=51.64  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ...++|.||+|+|||+|++.+....
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.56  E-value=0.016  Score=55.13  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+++|+|+||+||||||++..|+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~  120 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF  120 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.55  E-value=0.021  Score=51.12  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++++|+|++|+||||++..|+...
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999998764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=94.55  E-value=0.021  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++++..
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            5899999999999999999864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.54  E-value=0.023  Score=53.66  Aligned_cols=25  Identities=32%  Similarity=0.609  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.|+|.||+|+|||+|++.|+...
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.53  E-value=0.025  Score=52.09  Aligned_cols=26  Identities=31%  Similarity=0.575  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.|+|.||+|+|||+|++.|+....
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc
Confidence            47899999999999999999998754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.52  E-value=0.02  Score=53.04  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.++.|+||+|+|||||+..|+..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999998865

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.52  E-value=0.022  Score=54.11  Aligned_cols=117  Identities=15%  Similarity=0.245  Sum_probs=58.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH-----cCCcceeeeecCc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS-----AGKMIEFGEYKGH  185 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~-----~~~flE~~~~~g~  185 (264)
                      ..++|.||+|+|||||++.|+......|.. +...+        .|.+.  + ++.+.....     .+..+..-+. +.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~-l~a~~--------~~~~~--i-r~~~~~a~~~~~~~~~~iLfIDEI-~~  117 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVER-ISAVT--------SGVKE--I-REAIERARQNRNAGRRTILFVDEV-HR  117 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEE-EETTT--------CCHHH--H-HHHHHHHHHHHHTTCCEEEEEETT-TC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEE-EEecc--------CCHHH--H-HHHHHHHHHhhhcCCCcEEEEeCh-hh
Confidence            579999999999999999999876443322 22111        11110  0 111211110     1112211111 11


Q ss_pred             eecCCHHHHHHHHHcCCeEEEEcC---HH--HHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166        186 LYGTSSDSVLELVNSGRVAVLNPA---YQ--SLKVLRSPAFKPLVLFIAPPPFAALKESRITA  243 (264)
Q Consensus       186 ~YGt~~~si~~vl~~Gki~vld~~---~~--~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~  243 (264)
                      +-....+.+...+++|.+.++-..   +.  ....|...   ..++.+.+|+.+.+...-...
T Consensus       118 l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR---~~v~~l~~l~~edi~~il~~~  177 (447)
T 3pvs_A          118 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR---ARVYLLKSLSTEDIEQVLTQA  177 (447)
T ss_dssp             C------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTT---EEEEECCCCCHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCc---eeEEeeCCcCHHHHHHHHHHH
Confidence            222233456677888887655332   21  12334332   336668899988887654443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.51  E-value=0.022  Score=54.66  Aligned_cols=25  Identities=28%  Similarity=0.634  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.|+|+||+|+|||+|++.|+....
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999998643

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.48  E-value=0.024  Score=53.99  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++=|+|.||+|+|||.|++.|+....
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            347899999999999999999998743

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.47  E-value=0.018  Score=52.88  Aligned_cols=55  Identities=22%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCC-cceeecCHHHHH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDG-KEYHFVSHETMT  168 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G-~dY~fvs~~~f~  168 (264)
                      -|+|+|.+|||||||+++|....|.  ....+.||..|..+.  .++ ..+.++|-.-+.
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i  217 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLI  217 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence            4899999999999999999877542  123345777665432  222 456666655554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.45  E-value=0.025  Score=49.92  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++|.||.|+|||||++.++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            699999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.45  E-value=0.01  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.646  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      -.|+|+|.+|||||||+++|+
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~   36 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999944

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.44  E-value=0.022  Score=51.61  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+.+|+||+|+|||||+..|.
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.32  E-value=0.033  Score=47.57  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +..+++++|..|||||||++.|+..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            5578899999999999999999843

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.31  E-value=0.025  Score=54.47  Aligned_cols=26  Identities=19%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+++|+||+|+|||||++.|+...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.29  E-value=0.03  Score=49.09  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..++|.||+|+|||++++.|+..
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999999876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.28  E-value=0.031  Score=53.97  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-++|+||+|+|||+|++.|+....
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999998754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.24  E-value=0.026  Score=49.79  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.++|.||.|+|||+|++.++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            589999999999999999998763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.22  E-value=0.027  Score=53.12  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++=|.|.||||+|||.|++.|+....
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            347899999999999999999998754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.21  E-value=0.029  Score=52.99  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++-++|.||+|+|||+|++.|+....
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            46899999999999999999998743

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.17  E-value=0.031  Score=50.09  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..++|.||+|+||||+++.++...
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.18  E-value=0.0087  Score=49.21  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            46899999999999999999854

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.12  E-value=0.03  Score=51.40  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++++++|.||+|+|||||+..|+..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999888754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=94.11  E-value=0.02  Score=59.27  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+++++|+||+|+|||||++.+..
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHHH
Confidence            468999999999999999998753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.08  E-value=0.029  Score=51.93  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+++|+||+|+|||||++.|...
T Consensus        27 g~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHh
Confidence            39999999999999999998754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.06  E-value=0.016  Score=51.62  Aligned_cols=25  Identities=40%  Similarity=0.581  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..++|.||+|+|||+|++.|+...+
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             ceEEEECCCCccHHHHHHHHHHhCc
Confidence            4699999999999999999998764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.04  E-value=0.022  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.+|+||+|+|||||+..|.-
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHH
Confidence            3999999999999999999874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.04  E-value=0.037  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      ++.+++|.|++|+|||+|+..++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999999977653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=93.97  E-value=0.035  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|.||+|+|||++++.|+..
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHH
Confidence            4999999999999999999876

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.96  E-value=0.029  Score=58.15  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRL  130 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L  130 (264)
                      .+++++|+||+|+||||+++.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4689999999999999999988

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.93  E-value=0.031  Score=53.25  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+|++||||||++..|+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            3579999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	5e-25
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	7e-22
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	8e-21
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	1e-20
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	5e-18
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	3e-11
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.003

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (237), Expect = 5e-25
 Identities = 53/132 (40%), Positives = 80/132 (60%)

Query: 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMT 168
           +R+ +VL+G  GVGR  +K  LI   PD+F    P+TTRP K  EE+GK Y+FVSH+ M 
Sbjct: 2   MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMM 61

Query: 169 SLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
             IS  + +E+G ++  +YGT  +++ ++   G +A+L+   Q+LKVLR+  F P V+FI
Sbjct: 62  QDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFI 121

Query: 229 APPPFAALKESR 240
           A P         
Sbjct: 122 AAPTITPGLNED 133

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.1 bits (217), Expect = 7e-22
 Identities = 50/123 (40%), Positives = 73/123 (59%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RPVVL GPSG G+S L ++L       F     +TTR  +PGEEDGK+Y+FV+ E M   
Sbjct: 1   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 60

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
           I+AG  IE  E+ G+LYGTS ++V  +    R+ VL+   Q ++ ++     P+ +F+ P
Sbjct: 61  IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 120

Query: 231 PPF 233
           P  
Sbjct: 121 PSL 123

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 85.3 bits (210), Expect = 8e-21
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTS 169
              ++  PSG G+S L + L+   P   TQV+  +TTR  +PGE  G+ Y FV+H+    
Sbjct: 3   TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 62

Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
           +IS    +E  E  G+ YGTS +++ +++ +G    L+  +Q  + +R        +FI 
Sbjct: 63  MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFIL 122

Query: 230 PPPF 233
           PP  
Sbjct: 123 PPSK 126

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (207), Expect = 1e-20
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           RP+V+ GPSG G+S L ++L A  PD F      TTR  + GE +GK+Y+FVS +   S+
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61

Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIA 229
           I   + IE+ ++ G+ YG++  SV ++  SG+  +L+   Q +K +++ P      LFIA
Sbjct: 62  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121

Query: 230 PPPFAALKESRITAFARSPFDQYNSR 255
           PP    LK+           +  N R
Sbjct: 122 PPSVEDLKKRLEG-RGTETEESINKR 146

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.0 bits (191), Expect = 5e-18
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 105 PMET-LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS 163
            ME    RP++++GP    +      L++  PDKF    P+TTRPK+  E DG++YHFVS
Sbjct: 3   QMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVS 59

Query: 164 HET-MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFK 222
               M   I A K IE G+Y  HLYGTS  SV E+   G+  +L+ +  +++ L++    
Sbjct: 60  SREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLH 119

Query: 223 PLVLFIAPPPFAALK 237
           P+ +FI P     + 
Sbjct: 120 PIAIFIRPRSLENVL 134

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
           R VVL GPS VG+S + R L    P+    V+  TTR  +PGE DG +YHF+       L
Sbjct: 3   RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 61

Query: 171 ISAGKMIEFGEYKG--HLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
           I  G+++E+ E  G  H  GT +  V     +G   ++       + ++    + + +F+
Sbjct: 62  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 121

Query: 229 APPPFAALKESRITAFARSPFDQYNSR 255
           APP +  L+  R+        D    R
Sbjct: 122 APPSWQDLQA-RLIGRGTETADVIQRR 147

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 16/108 (14%), Positives = 33/108 (30%)

Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
           ++  ++ GP+GVG+S   +RL A   +               G     E   +   T  +
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61

Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLR 217
           +          +    L   +     E +     A ++       +L 
Sbjct: 62  ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW 109

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 25/137 (18%)

Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
             ++L G  G G+S +   L                         G        + +   
Sbjct: 5   NILLLSGHPGSGKSTIAEALA---------------------NLPGVPKVHFHSDDLWGY 43

Query: 171 ISAGKMIEF----GEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVL 226
           I  G++  +     +    +   ++D        G   +L+   +   +    A    + 
Sbjct: 44  IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLH 103

Query: 227 FIAPPPFAALKESRITA 243
           +I     AA    R   
Sbjct: 104 YIVLRTTAAEAIERCLD 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	100.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	100.0
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.98
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.97
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.69
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.68
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.51
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.47
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.46
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.25
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.14
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.12
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.12
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.1
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.09
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.07
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.03
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.01
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.97
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.91
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.89
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.87
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.86
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.83
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.81
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.8
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.76
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.69
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.67
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.66
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.66
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.61
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.52
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.5
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.45
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.44
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.36
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.34
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.31
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.31
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.27
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.25
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.25
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.25
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.24
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.23
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.21
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.21
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.2
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.2
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.17
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.11
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.09
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.03
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.99
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.94
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.93
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.85
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.81
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.69
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.58
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.57
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.56
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.53
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.52
d1okkd2	207	GTPase domain of the signal recognition particle r	96.52
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.42
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.39
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.34
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.34
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.33
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.25
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.22
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.21
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.2
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.2
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.19
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.18
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.16
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.12
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.12
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.11
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.11
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.11
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.1
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.07
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.06
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.01
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.98
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.98
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.97
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.95
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.92
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.91
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.9
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.88
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.86
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.85
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.82
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.79
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.79
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.78
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.74
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.71
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.7
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.68
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.66
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.62
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.6
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.55
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.54
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.53
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.51
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.48
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.45
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.37
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.37
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.36
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.36
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.3
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.3
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.27
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.26
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.21
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.2
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.03
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.03
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.92
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.81
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.79
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.77
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.76
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.74
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.7
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.7
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.69
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.67
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.66
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.63
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.61
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.41
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.39
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.37
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.28
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.28
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.09
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.09
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.99
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	93.99
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.8
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.69
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.68
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.28
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.12
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.01
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	92.66
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.36
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.98
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.92
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.83
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.28
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.18
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.12
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.01
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.94
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.93
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.63
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.25
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.16
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.06
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.01
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.01
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	88.74
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.91
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	86.84
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.12
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.01
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.85
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.15
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	83.6
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.17
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.17
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.77
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.05

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-37  Score=263.92  Aligned_cols=131  Identities=28%  Similarity=0.485  Sum_probs=125.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC-CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD-KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~-~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      |++|||+|||||||+||++.|++.+|. .|..+|+||||+||+||.+|+||||||.++|++++.+|.|+||+++.||+||
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            689999999999999999999999985 5888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR  240 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r  240 (264)
                      |+.+++..++++|++||+|++++++..++...+.+++|||.|||.++|++++
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL  133 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRL  133 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHH
T ss_pred             cccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-36  Score=251.18  Aligned_cols=123  Identities=42%  Similarity=0.756  Sum_probs=117.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      ++|||+|||||||+||+++|++.+|+.|..+++||||+||++|.+|+||||||.++|++++.+|.|+||+++.|++|||+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt~   83 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK   83 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCCh
Q psy14166        191 SDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPF  233 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~  233 (264)
                      .+++.+++++|++||+|+++++++.++.....|++|||.||+.
T Consensus        84 ~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~  126 (178)
T d1kgda_          84 LETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTI  126 (178)
T ss_dssp             HHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSC
T ss_pred             eecccchhccCceEEeccchhhhhhhhccccccceeeEecccc
Confidence            9999999999999999999999999999999999999999975

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=236.99  Aligned_cols=134  Identities=37%  Similarity=0.679  Sum_probs=126.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      |+|||+|||||||+||++.|++.+|+.|..+++||||+|+++|.+|++|+|+|.++|+.++.+|.|+|++++.|++||++
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCHHHHHHHhc-CCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166        191 SDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIAPPPFAALKESRITAFA  245 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~~~~~~Lr~-~~~~p~vIfI~pps~e~l~~~r~~~~~  245 (264)
                      .+++..++.+|++||++++++++..++. .+++|++||+.||+.++|+++. ..+.
T Consensus        82 ~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL-~~Rg  136 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRL-EGRG  136 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHH-HHHS
T ss_pred             hhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHH-Hhhc
Confidence            9999999999999999999999999997 4789999999999999998754 3343

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-33  Score=241.92  Aligned_cols=130  Identities=38%  Similarity=0.680  Sum_probs=123.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHHHHHHHHcCCcceeeeecCcee
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTSLISAGKMIEFGEYKGHLY  187 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~f~~~i~~~~flE~~~~~g~~Y  187 (264)
                      ..|+|||+||   ||+|+.++|++.+|+.|..+++||||+||+||.+|+||||| +.++|++++.+|.|+||+++.|++|
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~Y   84 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY   84 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCcc
Confidence            3589999998   59999999999999999999999999999999999999998 7788999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      ||+.++|..++++|++||+|++++|+..|+..++.|++|||.|||.+.++++++
T Consensus        85 Gt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~k  138 (199)
T d1kjwa2          85 GTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK  138 (199)
T ss_dssp             EEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCT
T ss_pred             ceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999998886544

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.4e-32  Score=232.86  Aligned_cols=131  Identities=39%  Similarity=0.692  Sum_probs=126.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS  190 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~  190 (264)
                      |+|||+|||||||+||++.|++.+|..|..+++||||+|+.+|.+|++|+|+|.++|++++..|.|++++++.|++||++
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166        191 SDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI  241 (264)
Q Consensus       191 ~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~  241 (264)
                      .+++..++..|++|+++++++++..|+...+.|++||+.||+.++|+++.+
T Consensus        81 ~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~  131 (190)
T d1lvga_          81 KEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLR  131 (190)
T ss_dssp             HHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHH
T ss_pred             cchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999987443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=4.7e-32  Score=226.75  Aligned_cols=136  Identities=30%  Similarity=0.536  Sum_probs=126.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce--e
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL--Y  187 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~--Y  187 (264)
                      |++|||+|||||||+||++.|++.+|. |..+++||||+||++|.+|++|||+|.++|++++.++.|+|++.+.+|+  |
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            689999999999999999999999985 7889999999999999999999999999999999999999999999875  6


Q ss_pred             cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhccCC
Q psy14166        188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARS  247 (264)
Q Consensus       188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~~~  247 (264)
                      |++.+++..++..|++|+++++++++..++...+.|++|||.|||.++|++ |...++..
T Consensus        81 g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~-RL~~Rg~~  139 (182)
T d1znwa1          81 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA-RLIGRGTE  139 (182)
T ss_dssp             EEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH-HHHTTSCS
T ss_pred             ccccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecccHHHHHH-HhhhcCcc
Confidence            999999999999999999999999999999999999999999999999987 44444443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.73  E-value=4.6e-09  Score=83.34  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee----cC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY----KG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~----~g  184 (264)
                      .+++|+|+|||||||||+++.|++.....+                     .+++.+.+...+..+...++...    ..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~---------------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   61 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPK---------------------VHFHSDDLWGYIKHGRIDPWLPQSHQQNR   61 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCE---------------------EEECTTHHHHTCCSSCCCTTSSSHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCE---------------------EEecHHHHHHHHhcCCcccccchhhhHHH
Confidence            468999999999999999999988753221                     11222222221111111110000    00


Q ss_pred             ceecCCHHHHHHHHHcCCeEEEEcCH--HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        185 HLYGTSSDSVLELVNSGRVAVLNPAY--QSLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       185 ~~YGt~~~si~~vl~~Gki~vld~~~--~~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      ..+......+...+..+..+|++.-.  ..+..++......++||+.++ ++++.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~  116 (176)
T d1zp6a1          62 MIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTT-AAEAIE  116 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECC-HHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCeEecccccHHHHHHHHhcccccccccCCCC-HHHHHH
Confidence            11222234556667788888887643  345556656666778889886 555544

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.69  E-value=1.7e-08  Score=78.61  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|+|+||||||||||++.|+...+
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            6899999999999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.68  E-value=5.4e-08  Score=76.16  Aligned_cols=26  Identities=35%  Similarity=0.592  Sum_probs=23.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++|+|+||+||||||+++.|++.++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            68999999999999999999998754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.1e-07  Score=75.66  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+.+|+|+|++||||||+++.|+....                       |.+++.+.+...                 .
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~-----------------------~~~i~~D~~~~~-----------------~   52 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAG-----------------------YVHVNRDTLGSW-----------------Q   52 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGT-----------------------CEEEEHHHHCSH-----------------H
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcC-----------------------CEEEchHHHHHH-----------------H
Confidence            457999999999999999999875421                       233444443211                 1


Q ss_pred             CCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPPFAALKE  238 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps~e~l~~  238 (264)
                      .....++..+.+|..+|+|...   .    .+..++..+....+||+.+| .+++.+
T Consensus        53 ~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~-~e~~~~  108 (172)
T d1yj5a2          53 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARH  108 (172)
T ss_dssp             HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHH
T ss_pred             HHHHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCC-HHHHHH
Confidence            1145677889999999999774   2    24445567778889999886 666554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1.6e-07  Score=74.08  Aligned_cols=111  Identities=13%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG  188 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG  188 (264)
                      .+++++|+|||||||||+++.|++.....+  ....+.+               . .........+...... .....+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~--~~~d~~~---------------~-~~~~~~~~~~~~~~~~-~~~~~~~   65 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFLH---------------P-RRNIEKMASGEPLNDD-DRKPWLQ   65 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGGC---------------C-HHHHHHHHTTCCCCHH-HHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCe--echhhhh---------------H-HHHhhhhccCcceehh-hhHHHHH
Confidence            468999999999999999999998753211  1111111               1 1111111111111110 0000111


Q ss_pred             CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166        189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFKPLVLFIAPPPFAALKES  239 (264)
Q Consensus       189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~  239 (264)
                      .-...+...+..+..++++..   ......++.......+||+.+| ++++.++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R  118 (171)
T d1knqa_          66 ALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD-FDVIESR  118 (171)
T ss_dssp             HHHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECC-HHHHHHH
T ss_pred             HHHHHHHHHHhccCceEeeccchHHHHHHHHHHhCCCceEEeecCC-HHHHHHH
Confidence            112344555666666666554   2345566666666678899887 6666553

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.46  E-value=6.3e-08  Score=76.22  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=25.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDK  137 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~  137 (264)
                      .++|+|+|||||||||+++.|++.++..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~   30 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4799999999999999999999987643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.25  E-value=7.8e-07  Score=70.00  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-.|+|+||+||||||+++.|++.++
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.14  E-value=2.7e-06  Score=68.90  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|+|+||+||||||+++.|++.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=7.7e-07  Score=75.93  Aligned_cols=88  Identities=23%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCC-C-----------cceeecCHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEED-G-----------KEYHFVSHETMTSL  170 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~-G-----------~dY~fvs~~~f~~~  170 (264)
                      ++..+|+|+||||||||+|.|....-..- ..|       .|||+.......+ |           .+.+.++.++..  
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T-~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~--  171 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRV-SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK--  171 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG--
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhc-cCcccccCCCCccccceeEEEECCCcEEEeCCccccccccccCcchhh--
Confidence            58999999999999999999986532221 222       4899887654443 1           122234444332  


Q ss_pred             HHcCCcceeee---ecCc--eecCCHHHHHHHHHcCCe
Q psy14166        171 ISAGKMIEFGE---YKGH--LYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       171 i~~~~flE~~~---~~g~--~YGt~~~si~~vl~~Gki  203 (264)
                         ..|.|...   ...+  +-+.+.++|++++++|.+
T Consensus       172 ---~~F~e~~~~~CkF~dC~H~~EpgCaVk~av~~g~i  206 (225)
T d1u0la2         172 ---HYFKEFGDKQCFFSDCNHVDEPECGVKEAVENGEI  206 (225)
T ss_dssp             ---GGSTTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred             ---hhhhhHHhCCCCCCCCCCCCCCCCHHHHHHHcCCC
Confidence               33444322   1111  456778899999999975

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.12  E-value=1.7e-06  Score=69.09  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++|+|+|++||||||+++.|++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            678999999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.10  E-value=6.7e-07  Score=71.27  Aligned_cols=23  Identities=39%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++||||||+.+.|++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.1e-07  Score=78.72  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      +|+.|||-|+.||||||+++.|.+.... .+.....+||+|.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~-~g~~~~~~~~ep~   41 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPG   41 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEecCCC
Confidence            4789999999999999999999875321 1222334566663

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.07  E-value=4e-06  Score=65.87  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|.|++||||||+++.|.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999998763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=4.8e-06  Score=67.25  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +-+|+|+|.||||||||+++|++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.03  E-value=7.5e-07  Score=69.76  Aligned_cols=24  Identities=29%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ..|+|+||+||||||+++.|++.+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.02  E-value=5.7e-06  Score=66.83  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      -.|+|+||+||||||+++.|++.+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            5689999999999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=2.9e-07  Score=78.91  Aligned_cols=88  Identities=22%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCCC--------c---ceeecCHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEEDG--------K---EYHFVSHETMTSLI  171 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~G--------~---dY~fvs~~~f~~~i  171 (264)
                      ++..+|+|+||||||||+|.|....... ...|       .|||+.......+|        .   +.+.++.++.    
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~-t~~vs~~~~rGrHTTt~~~l~~~~gg~iiDTPG~r~~~l~~~~~~~l----  171 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLR-TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEEL----  171 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHH----
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhh-hcccccccCCCceeeeeEEEEecCCCEEEECCccccccccccCcccc----
Confidence            4789999999999999999998753221 1223       38888754322222        1   1122343332    


Q ss_pred             HcCCcceeeeecC-------ceecCCHHHHHHHHHcCCe
Q psy14166        172 SAGKMIEFGEYKG-------HLYGTSSDSVLELVNSGRV  203 (264)
Q Consensus       172 ~~~~flE~~~~~g-------~~YGt~~~si~~vl~~Gki  203 (264)
                       ...|.|..++.+       .+-+.+.++|++++++|++
T Consensus       172 -~~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~g~i  209 (231)
T d1t9ha2         172 -GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGEL  209 (231)
T ss_dssp             -GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred             -hhhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHcCCC
Confidence             223333333222       1456778999999999975

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=1.6e-05  Score=64.38  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..++|+|+||+||||||+++.|++.+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457999999999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=5.7e-06  Score=65.56  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |||+|++||||||+.+.|++..
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6778999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=2e-05  Score=65.58  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +|++|+|-|+.||||||+++.|.+....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6899999999999999999999987543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.7e-05  Score=64.62  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|++|+|.|+.||||||+++.|.+..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67999999999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=3.6e-06  Score=64.43  Aligned_cols=25  Identities=36%  Similarity=0.659  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +.|+|+||+|||||||++.|++...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.83  E-value=6.8e-06  Score=68.51  Aligned_cols=26  Identities=27%  Similarity=0.167  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|.|+|.||||||||++.|....
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=7.2e-06  Score=70.03  Aligned_cols=117  Identities=22%  Similarity=0.299  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc----cccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT----PYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v----~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g  184 (264)
                      .+.+++|+||||||||||++.|....+..-+...    ..+..++   ...++.|.|.+...|..+    ...|...+..
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~~----tv~eni~~~~   97 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---AERGVGMVFQSYALYPHL----SVAENMSFGL   97 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG---GGTCEEEECSSCCC------------------
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch---hhceeeeeccccccccch----hHHHHHHHHH
Confidence            5699999999999999999999988643222211    1111111   123477888776555443    2222222223


Q ss_pred             ceecCCH----HHHHHHHHcCCe-EEEEcCHH---H-----HHHHhcCCCCcEEEEEeCCC
Q psy14166        185 HLYGTSS----DSVLELVNSGRV-AVLNPAYQ---S-----LKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       185 ~~YGt~~----~si~~vl~~Gki-~vld~~~~---~-----~~~Lr~~~~~p~vIfI~pps  232 (264)
                      ..+|.+.    +.+.++++.=.+ -..+-.+.   +     +-..|.--.+|-+++++-|.
T Consensus        98 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          98 KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             -------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred             HHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            3444443    234455543211 12222221   1     11122223478899999886

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=4.3e-06  Score=65.34  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=24.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|.|+|+||+|||||||++.|++.+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            48999999999999999999999865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.80  E-value=6.3e-06  Score=64.26  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=24.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|.+|.|+|+||||||||++.|++..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            367889999999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.1e-05  Score=64.20  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|.+|.|+|+||||||||++.|+...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=6.1e-06  Score=70.77  Aligned_cols=64  Identities=14%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+||||||||||++.|...++.             ..|+  ++|.+....+.+.+.+.+   .++.++..++..
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p-------------~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~   94 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYIP-------------ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII   94 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC-------------SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCC-------------CCCEEEECCEEecccchhhhhceEEEEecccccCCcccc
Confidence            5699999999999999999999988653             1222  456665555555555432   334444444444


Q ss_pred             Cc
Q psy14166        184 GH  185 (264)
Q Consensus       184 g~  185 (264)
                      .|
T Consensus        95 eN   96 (241)
T d2pmka1          95 DN   96 (241)
T ss_dssp             HH
T ss_pred             cc
Confidence            44

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.71  E-value=5.6e-05  Score=61.43  Aligned_cols=25  Identities=16%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .-.|+|+||+||||||+++.|++.+
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578889999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.69  E-value=1.1e-05  Score=69.22  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc----cccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT----PYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKG  184 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v----~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g  184 (264)
                      .+.+++|+||||||||||++.|....+..-+...    ..+.-++.   ...+.|.|.+...|..+    ...|...+..
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~---~r~ig~v~Q~~~l~~~l----tv~enl~~~~  103 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYAVWPHM----TVYENIAFPL  103 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG---GGTEEEEEC------CC----CHHHHHHTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc---cceEEEEeechhhcccc----hHHHHHHHHH
Confidence            5689999999999999999999997643222211    11222221   12477888766544322    2222222333


Q ss_pred             ceecCCHHHHHH----HHHcCCe-EEEEcC--------HHHHHHHhcCCCCcEEEEEeCCC
Q psy14166        185 HLYGTSSDSVLE----LVNSGRV-AVLNPA--------YQSLKVLRSPAFKPLVLFIAPPP  232 (264)
Q Consensus       185 ~~YGt~~~si~~----vl~~Gki-~vld~~--------~~~~~~Lr~~~~~p~vIfI~pps  232 (264)
                      ..+|.+.+.+++    +++.=.+ -+.+-.        -|-+-..|.--.+|-+++++-|.
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3         104 KIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             C--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence            455666544433    3332111 011111        12233444445688999999886

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.67  E-value=2.4e-06  Score=74.04  Aligned_cols=78  Identities=19%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK  183 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~  183 (264)
                      ++..++|+||||||||||++.|...++.             ..|+  ++|.+...++...+.+.+   .+..++..++..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p-------------~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~  109 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDV-------------TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK  109 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCC-------------SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCc-------------cccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHH
Confidence            5689999999999999999999887643             2232  467666666666665542   355666666766


Q ss_pred             Cce-ecC---CHHHHHHHHH
Q psy14166        184 GHL-YGT---SSDSVLELVN  199 (264)
Q Consensus       184 g~~-YGt---~~~si~~vl~  199 (264)
                      .|. +|.   ..+.+.++++
T Consensus       110 eNi~~g~~~~~~~~~~~al~  129 (255)
T d2hyda1         110 ENILLGRPTATDEEVVEAAK  129 (255)
T ss_dssp             HHHGGGCSSCCHHHHHHHHH
T ss_pred             HHHhccCcCCCHHHHHHHHH
Confidence            663 553   3445555544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.66  E-value=1.4e-05  Score=68.15  Aligned_cols=27  Identities=33%  Similarity=0.487  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++.+++|+||||||||||++.|....+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCCC
Confidence            569999999999999999999988754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1e-05  Score=69.60  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||||||||++.|...++
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            569999999999999999999998764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=1.4e-05  Score=68.77  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||||||||++.|+..++
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            568999999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.57  E-value=4.8e-06  Score=71.62  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||||||||||++.|....+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            5699999999999999999999998654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.1e-05  Score=61.02  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++++|+|++|||||||++.|+...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.6e-05  Score=66.75  Aligned_cols=27  Identities=33%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|....+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            569999999999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.50  E-value=2.6e-05  Score=63.10  Aligned_cols=27  Identities=11%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+++|+|+||+||||||+++.|++.+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            458999999999999999999999863

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.45  E-value=2.2e-05  Score=61.75  Aligned_cols=24  Identities=21%  Similarity=0.583  Sum_probs=21.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      |+|+||+|+|||||++.|++..+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            899999999999999999987543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.3e-05  Score=62.45  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      -+|+|.|++|||||||++.|.+...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3788999999999999999988753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.38  E-value=4.8e-05  Score=64.87  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||+|+|||||++.|....+.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5699999999999999999999998654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=3.4e-05  Score=61.97  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+|+|+||+||||||+++.|++.+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.36  E-value=5.5e-05  Score=64.97  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||+|||||||++.|....+.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCcC
Confidence            5699999999999999999999998654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.35  E-value=4.4e-05  Score=61.27  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +-.|||+||+||||||+++.|++.+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567789999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.34  E-value=5.3e-05  Score=62.74  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +|.+++|+||+|||||||++.|++..+.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccccc
Confidence            5699999999999999999999987653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.31  E-value=7.5e-05  Score=58.96  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      .|+|+|++|||||||.|+|......  ....+.|||...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~~   38 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKII   38 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce--eeCCCCEeeccc
Confidence            5899999999999999999876431  224556777643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=4.3e-05  Score=60.44  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+||+||||||+++.|++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.27  E-value=5.9e-05  Score=59.16  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|||.|++||||||+++.|++..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999999988754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00011  Score=61.08  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.++|.||+|+||||+++.|+....
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.25  E-value=7.6e-05  Score=59.06  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -+|.|.||+|||||||++.|....
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            456699999999999999998753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=9.9e-05  Score=59.32  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.|+|+|++|||||||+|+|....
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999999764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=4.7e-05  Score=60.00  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP  151 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~  151 (264)
                      .|+|+|++|||||||+++|...... .....+++|+....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~-~~~~~~~~t~~~~~   40 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQ   40 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcc-eecccCceeecccc
Confidence            5899999999999999999875432 12344566666543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.24  E-value=0.00011  Score=61.21  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++.|+|.||+|+|||||++.|+....
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            557899999999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=7.7e-05  Score=57.82  Aligned_cols=23  Identities=39%  Similarity=0.722  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |.|+|+||+|+|||||++.++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            67999999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.22  E-value=7.9e-05  Score=63.54  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++..++|+||||||||||++.|...+.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            469999999999999999999998864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=7.1e-05  Score=60.56  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++|+|.||+||||+|+++.|++.+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4888889999999999999999863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00012  Score=56.53  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK  149 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~  149 (264)
                      .|+|+|++|||||||+++|.+.... .....+.||+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~~~-~~~~~~~~~~~~   39 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDV   39 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-Eeecccccccce
Confidence            5899999999999999999977542 223344555543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.21  E-value=7.5e-05  Score=59.44  Aligned_cols=55  Identities=24%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC---CCCcceeecCHHHHH
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE---EDGKEYHFVSHETMT  168 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE---~~G~dY~fvs~~~f~  168 (264)
                      -|+|+|++|||||||+|+|......  ...-+.+|+.+..+-   .+|..+.++|..-+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~--~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~   60 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLI   60 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc--eecCCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence            3899999999999999999876531  122334555443321   245667777776654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.21  E-value=0.00011  Score=62.80  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|+...+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            468999999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.20  E-value=7.3e-05  Score=63.48  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.+++|+||||||||||++.|....+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            568999999999999999999999854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=6.7e-05  Score=59.72  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+||+||||||+++.|++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999885

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00011  Score=64.01  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.+++|+||||||||||++.|+...+.
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCcC
Confidence            5799999999999999999999987643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.17  E-value=9.9e-05  Score=58.83  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+||||||+++.|++.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999998853

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00028  Score=58.17  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      +-++|.||+|+||||+++.|+....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999998754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.11  E-value=0.00013  Score=62.83  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.+++|+||||||||||++.|....+.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p   54 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLEKP   54 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCccC
Confidence            5699999999999999999999987643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00011  Score=62.00  Aligned_cols=28  Identities=29%  Similarity=0.566  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +|.+++|+||+|+|||||++.|....|.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~~   51 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTSG   51 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5799999999999999999999987653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.00017  Score=61.61  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+++|+||||||||||++.|....+.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCC
Confidence            58899999999999999999998654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00016  Score=56.74  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +++.|+|++|||||||+++|+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            588999999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00014  Score=57.62  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|+||+||||||+++.|++.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.0002  Score=60.81  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.++.|+||+|+|||||++.|....+.
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999988653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=0.00025  Score=56.77  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.|+|+|++|||||||+|.|...
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC
Confidence            46999999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00021  Score=56.92  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+||+||||||+++.|++.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00021  Score=54.10  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.94  E-value=0.00022  Score=54.31  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.93  E-value=0.00017  Score=58.62  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|.||+||||+|+++.|++.+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999999853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00012  Score=57.18  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ....|+|+|.++||||||+|+|....
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34679999999999999999997754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00036  Score=55.11  Aligned_cols=39  Identities=28%  Similarity=0.418  Sum_probs=28.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      ..|+|+|.+|||||||+++|.+..... ....+.||+...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~-~~~~~~tt~~~~   44 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRL   44 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee-ecccCCcccccc
Confidence            379999999999999999999764321 123455666543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.88  E-value=0.00022  Score=55.46  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.-.|+|+|++|||||||+++|....
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344578999999999999999998654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.0003  Score=55.55  Aligned_cols=53  Identities=30%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSH  164 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~  164 (264)
                      -.|+|+|.+|||||||+++|...... .....+.||+....+.  .+|..+..++.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~d~   63 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDT   63 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcc-eeecccccccccceeeeccCCceeeeecc
Confidence            46899999999999999999975421 1223455666654432  34555555543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=7.1e-05  Score=57.86  Aligned_cols=39  Identities=33%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP  151 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~  151 (264)
                      -|+|+|.+|||||||+|+|.+.... .....+.+|+.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~-~~~~~~~~~~~~~~   40 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVIS   40 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeecccccccccee
Confidence            3899999999999999999976432 33455667776644

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.82  E-value=0.00027  Score=60.09  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=36.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHE  165 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~  165 (264)
                      -.|+|+|.+|||||||.|.|.+..-... ...+.|||....+  ..+|..+.++|..
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~~~~v-s~~~~~T~~~~~~~~~~~g~~i~viDTP   88 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTP   88 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCceee-cCCCCcceeEEEEEEEeccEEEEEEeee
Confidence            5799999999999999999998642111 2344566665332  3566666666543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00035  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .|+|+|.+|||||||+|+|.+..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~   29 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQK   29 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00031  Score=56.12  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++-+|+|-|+.||||||+++.|.+..+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4458999999999999999999988754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.69  E-value=0.00045  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|.+|||||||+++|....
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00049  Score=56.78  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+.++|.||+|+||||+++.|++...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999998743

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.63  E-value=0.00051  Score=56.04  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|+|+.|||||||+++|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999998653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00061  Score=54.91  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |.|+|+|++|||||||+++|....
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            579999999999999999999754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.57  E-value=0.00058  Score=59.51  Aligned_cols=25  Identities=44%  Similarity=0.946  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++-++|+||||||||+|++.|++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc
Confidence            3678999999999999999999874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.56  E-value=0.00069  Score=55.54  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..++|.||+|+||||+++.|++.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.54  E-value=0.00057  Score=56.13  Aligned_cols=27  Identities=15%  Similarity=0.073  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.++|.||+|+|||+|++.++...+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            378999999999999999999876544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00045  Score=56.49  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=24.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      .+.|+|-|+.||||||+++.|++....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            589999999999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.52  E-value=0.00018  Score=62.93  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++.+|.|.|+|||||||+++.|...+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence            45699999999999999999988754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.52  E-value=0.00092  Score=55.50  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++++|+|+||+||||||.+-+|+..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999998888765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.00059  Score=53.81  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|+|.+|||||||+|+|.+..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.39  E-value=0.001  Score=51.45  Aligned_cols=23  Identities=13%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|++|||||||+++|....
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58999999999999999997653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00067  Score=52.84  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.34  E-value=0.0011  Score=54.37  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+..++|.||+|+|||++++.|+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.001  Score=58.78  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.1

Q ss_pred             hcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        102 KLYPMETLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       102 ~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+++..++...|.|.||+|||||||++.|+...
T Consensus        46 ~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          46 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            334444456789999999999999999998653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.001  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999999864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0013  Score=54.90  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+||+||||||.+-+|+..
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999988888865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.22  E-value=0.0011  Score=51.37  Aligned_cols=23  Identities=13%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|.+|||||||+++|...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.001  Score=60.08  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=26.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC---CccccccccCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD---KFTQVTPYTTRPKKP  151 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~---~f~~~v~~TTR~~r~  151 (264)
                      --|+|+|.+|||||||+|.|.+....   .....+..||+.+..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~  100 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP  100 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee
Confidence            45999999999999999999975432   122335567877643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.21  E-value=0.0015  Score=54.10  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+++|+|+||+||||||.+-+|+..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999999888865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0015  Score=50.83  Aligned_cols=26  Identities=12%  Similarity=0.141  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +++++.|.||+|+|||+|+..|+...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56999999999999999999988653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.20  E-value=0.0017  Score=50.55  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.--|+|+|++|||||||+++|...
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3356999999999999999999764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.20  E-value=0.0013  Score=52.36  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -+|+|+|++||||||+++.|.+.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            36779999999999999999654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0013  Score=51.28  Aligned_cols=22  Identities=36%  Similarity=0.717  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3899999999999999999864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.0013  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3899999999999999999865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=50.92  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=50.89  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=51.03  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .-|+|+|.+|||||||+++|+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            56899999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.004  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..++|.||+|+||||+++.|++.
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999999876

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0011  Score=51.52  Aligned_cols=22  Identities=45%  Similarity=0.693  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+++|.+|||||||+++|....
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0017  Score=53.28  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.|+|-|+-||||||+++.|.+..+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            579999999999999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0017  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ...++|.||+|+||||+++.|++.
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            345899999999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=50.85  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0014  Score=53.45  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|.||+|+||||+++.|+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4889999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=50.71  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+|+|.+|||||||+++|+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0016  Score=50.98  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||+|+++++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999999865

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.07  E-value=0.0018  Score=57.86  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .-+.++||+|||||+|+++|++...
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cceeeeCCCCccHHHHHHHHHhhcc
Confidence            5799999999999999999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=50.99  Aligned_cols=22  Identities=55%  Similarity=0.741  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0016  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0017  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++++..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0019  Score=49.80  Aligned_cols=21  Identities=38%  Similarity=0.597  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+|+|.+|||||||+++|+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0018  Score=50.53  Aligned_cols=22  Identities=45%  Similarity=0.712  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.98  E-value=0.0016  Score=54.97  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +-|+|.||+|+|||+|++.|+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            569999999999999999999874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0019  Score=51.01  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0021  Score=54.64  Aligned_cols=25  Identities=24%  Similarity=0.608  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++-++|.||+|+|||+|++.|+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            4789999999999999999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.96  E-value=0.0019  Score=53.69  Aligned_cols=25  Identities=20%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+||+||||||.+-+|+..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999998888865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.002  Score=50.07  Aligned_cols=22  Identities=36%  Similarity=0.672  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.002  Score=50.49  Aligned_cols=23  Identities=35%  Similarity=0.637  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|.+|||||+|+++|+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.002  Score=50.41  Aligned_cols=21  Identities=43%  Similarity=0.787  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+|+|.+|||||||+++|+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0013  Score=52.68  Aligned_cols=22  Identities=45%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||||+++|...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            3889999999999999999865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0021  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||+|+++++..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.91  E-value=0.0025  Score=56.12  Aligned_cols=30  Identities=30%  Similarity=0.318  Sum_probs=24.6

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        104 YPMETLRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       104 ~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.......|.|.||+|||||||++.|+..
T Consensus        45 ~~~~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          45 LPQTGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hhccCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            334345578999999999999999999974

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.0018  Score=59.42  Aligned_cols=24  Identities=46%  Similarity=0.998  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .=|+|+||+|||||.|++.|++..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0022  Score=53.31  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+|+|+||+||||||.+-+|+..
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999888864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.003  Score=53.31  Aligned_cols=26  Identities=35%  Similarity=0.686  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++-++|.||+|+|||+|++.|+....
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC
Confidence            36799999999999999999998753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0022  Score=49.99  Aligned_cols=22  Identities=41%  Similarity=0.745  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      |+|+|.+|||||+|+++|....
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            7899999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.86  E-value=0.014  Score=52.39  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCH---HHHHHHH-----HcCCcceeeee
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH---ETMTSLI-----SAGKMIEFGEY  182 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~---~~f~~~i-----~~~~flE~~~~  182 (264)
                      -+|+|+||+||||||.+..++...+..-...+  |-=.|-+....|..-.-++.   ..|...+     ..-+.+-.|+.
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~--tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEi  236 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNIL--TVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI  236 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE--EEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceEE--EeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCc
Confidence            69999999999999999998886432111111  11122233334432221211   1233322     35577777776


Q ss_pred             cCceecCCHHHHHHHHHcCCeEEEEcCH----HHHHHHhcCCC
Q psy14166        183 KGHLYGTSSDSVLELVNSGRVAVLNPAY----QSLKVLRSPAF  221 (264)
Q Consensus       183 ~g~~YGt~~~si~~vl~~Gki~vld~~~----~~~~~Lr~~~~  221 (264)
                      .+.   .......++...|+.|+..++.    .++.+|...+.
T Consensus       237 Rd~---~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~  276 (401)
T d1p9ra_         237 RDL---ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI  276 (401)
T ss_dssp             CSH---HHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC
T ss_pred             CCh---HHHHHHHHHHhcCCeEEEEeccCchHhhhhhhhhccc
Confidence            652   2234445667799999888884    45666665433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0022  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0022  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0024  Score=49.64  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999965

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0027  Score=55.60  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+-+|.|.|+|||||||+++.|...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHH
Confidence            4458889999999999999998775

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.79  E-value=0.0035  Score=51.61  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..+++|.||+|+|||.|++.++..
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHH
Confidence            367999999999999999999876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.0025  Score=50.23  Aligned_cols=22  Identities=32%  Similarity=0.693  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0025  Score=49.40  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0024  Score=51.90  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|.||+|+||||+++.|++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999999986

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0024  Score=50.00  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +-|+|+|.+|||||+|+++|+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45789999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.76  E-value=0.0028  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +|+|.|+.||||||+++.|.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.74  E-value=0.0016  Score=53.68  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +++|.||+|+|||++++.+++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.71  E-value=0.0029  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||++++...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.003  Score=49.44  Aligned_cols=23  Identities=43%  Similarity=0.681  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|.+|||||+|+++|....
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            48899999999999999998654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0036  Score=54.58  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++|+||+|||||+|++.|++...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            688999999999999999998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.66  E-value=0.0017  Score=50.68  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0031  Score=48.93  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|.+|||||+|++++....
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.66  E-value=0.0039  Score=54.76  Aligned_cols=29  Identities=17%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKF  138 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f  138 (264)
                      ++-|+|+||+||||||+++.|+...|...
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccccc
Confidence            35689999999999999999999877643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0031  Score=48.98  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||+|+++++..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0032  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0031  Score=49.39  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0038  Score=52.66  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++-++|.||+|+|||+|++.|+....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC
Confidence            36799999999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.60  E-value=0.002  Score=50.64  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      --|+|+|++|||||||+++|...
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0032  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.55  E-value=0.0036  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -+|+|+|++||||||+++.|.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            37889999999999999988754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0034  Score=50.47  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +++++.|.||+|+|||+|+..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5799999999999999999888754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0043  Score=50.59  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+|.+.......+-+..++|.||+|+||+|+++.+++.
T Consensus        10 ~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHh
Confidence            35666555544334467999999999999999998875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.51  E-value=0.0036  Score=51.38  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++|+|+|+.||||||+++.|.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            589999999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0035  Score=49.62  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++|+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3899999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0035  Score=49.39  Aligned_cols=19  Identities=21%  Similarity=0.613  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q psy14166        112 PVVLIGPSGVGRSELKRRL  130 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L  130 (264)
                      -|+|+|.+|||||||+++|
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999999

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.004  Score=52.86  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++-|+|.||+|+|||+|++.|+....
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            46799999999999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0044  Score=48.27  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++++..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.37  E-value=0.0048  Score=49.80  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++-|+|+|+||+|||||+-.|+...
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            35789999999999999999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0022  Score=50.13  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|++|||||+|+++|+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.36  E-value=0.004  Score=49.14  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+++|||||+|+|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.36  E-value=0.0042  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||+|+++++..
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0049  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +|+|+|+.||||||+++.|.+.
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7889999999999999998755

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.30  E-value=0.0048  Score=49.86  Aligned_cols=26  Identities=38%  Similarity=0.540  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++-|+|.|+||+|||||+-.|+...
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            35789999999999999999998763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0025  Score=49.76  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=8.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q psy14166        113 VVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |+|+|.+|||||||+++|+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0051  Score=52.79  Aligned_cols=47  Identities=17%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             HHHHcCCe-EEEEcCHHHHHHHhc--CCCC--cEEEEEeCCChHHHHHHHHh
Q psy14166        196 ELVNSGRV-AVLNPAYQSLKVLRS--PAFK--PLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       196 ~vl~~Gki-~vld~~~~~~~~Lr~--~~~~--p~vIfI~pps~e~l~~~r~~  242 (264)
                      ..+..|.+ ||..++++-...+-.  ..|.  -..|.|.+||.+...+....
T Consensus       141 p~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~  192 (268)
T d1r6bx2         141 PLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING  192 (268)
T ss_dssp             SCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHH
Confidence            34568876 888899988776543  3343  34799999998876665443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.26  E-value=0.03  Score=45.35  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy14166        112 PVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      -|+|+|-.++|||||.++|..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.005  Score=50.55  Aligned_cols=46  Identities=11%  Similarity=0.174  Sum_probs=33.3

Q ss_pred             HHHHHHHHcCCe-EEEEcCHHHHHHHhcCC--C--CcEEEEEeCCChHHHH
Q psy14166        192 DSVLELVNSGRV-AVLNPAYQSLKVLRSPA--F--KPLVLFIAPPPFAALK  237 (264)
Q Consensus       192 ~si~~vl~~Gki-~vld~~~~~~~~Lr~~~--~--~p~vIfI~pps~e~l~  237 (264)
                      +-++..+..|.+ ||...+++-...+-..+  |  .-..|.|.+|+.+...
T Consensus       141 ~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~  191 (195)
T d1jbka_         141 NMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI  191 (195)
T ss_dssp             HHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred             HHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHH
Confidence            667778889987 88889998777654332  2  2357999999887654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.04  E-value=0.006  Score=49.52  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++++++|.||+|+|||+|+-.++..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999888765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.03  E-value=0.0064  Score=51.64  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK  150 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r  150 (264)
                      +-.++++|-++||||||+|.|.+..-. -....|.+||...
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~  151 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQ  151 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------C
T ss_pred             ceEEEEEecCccchhhhhhhhhccceE-EECCcccccccce
Confidence            356899999999999999999987542 3456788888754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0064  Score=47.99  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      --|+|+|.+|||||+|+++++...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.94  E-value=0.0075  Score=53.71  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .++.++|.||+|+|||++++.|+....
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457999999999999999999998743

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.93  E-value=0.0067  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|.+|||||+|++++....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999997664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.92  E-value=0.0063  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|.+|||||||+++|...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998644

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0076  Score=52.15  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -+|.|.|++|||||||+..|...
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHH
Confidence            46779999999999999877543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.81  E-value=0.0078  Score=46.76  Aligned_cols=22  Identities=18%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+|+|..|||||+|+++|...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.79  E-value=0.0082  Score=48.05  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++-|+|.|+||+|||||+-.|+...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            35789999999999999999998763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.007  Score=49.97  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ++++|.|.-|||||||+++|+...+
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            5789999999999999999998643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.0054  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.||+||+|||||+|+.+|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5889999999999999998843

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0016  Score=50.19  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.||+||+|||||||+.+|.-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.70  E-value=0.011  Score=48.64  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++|+|+|-+++|||||++.|...
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhh
Confidence            356999999999999999999865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.009  Score=48.24  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.+++|.||+|+|||+|+..++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.67  E-value=0.0049  Score=53.40  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=23.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      --|+|+||+|+|||+|++.|....|.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35899999999999999999987764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.66  E-value=0.0091  Score=52.00  Aligned_cols=23  Identities=39%  Similarity=0.777  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+.++||+|+|||.|++.|++..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            56788999999999999999863

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.63  E-value=0.0099  Score=48.26  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++.+++|.|++|+|||+|+..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5689999999999999999988875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.61  E-value=0.0094  Score=47.57  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.+++|.|++|+|||+|+..++..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5689999999999999999998865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.41  E-value=0.012  Score=46.65  Aligned_cols=23  Identities=22%  Similarity=0.554  Sum_probs=20.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      ++.+++|.|++|+|||+|+..++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            57999999999999999987654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.39  E-value=0.0078  Score=51.70  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        113 VVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       113 ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      |.|+|-++||||||.|.|.+..+
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~~   25 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVDV   25 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC---
T ss_pred             EeEECCCCCCHHHHHHHHHCCCC
Confidence            79999999999999999987654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.37  E-value=0.013  Score=48.76  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      ++.+++|.|+||+|||+|+..|+-
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            568999999999999999888774

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.28  E-value=0.031  Score=47.84  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |-|+|+|..|+|||||+.+|+..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            67999999999999999999754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.28  E-value=0.017  Score=49.31  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      --+.|+|-|+||||||.+.|....... ...-|.||..|-.|
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~-~anypftTi~pn~g   51 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGN-PANYPYATIDPEEA   51 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTS-TTCCSSCCCCTTEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCC-cCCCCccCccCCeE
Confidence            459999999999999999999753211 12346777776443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.016  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ..++|.||+|+||+|+++.++..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            56899999999999999998875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.019  Score=49.13  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP  148 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~  148 (264)
                      -+|.++||.++|||+|+|.|.+..   ++..+.+++.+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~---~~f~~~~~~~~   67 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK---KGFSLGSTVQS   67 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS---SCSCCCCSSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC---CCCccCCCCCC
Confidence            588899999999999999999764   34455544443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.015  Score=50.48  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELKRRLI  131 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~  131 (264)
                      .+.+|+||+|+|||+|+.+|.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            588999999999999999984

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.99  E-value=0.19  Score=40.70  Aligned_cols=51  Identities=14%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             HHHHHHHHcCCeEEEEcCH-HHHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166        192 DSVLELVNSGRVAVLNPAY-QSLKVLRSPAFKPLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       192 ~si~~vl~~Gki~vld~~~-~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~  242 (264)
                      +.|-+...+.+.||||++. +.-.+|....+.|++|||+-.|..+|.++-+.
T Consensus        98 ErIfelar~lqLvvLD~dtInhP~ql~ktsLaPIivyikiss~kVLqrLIKs  149 (219)
T d1t0hb_          98 ERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKS  149 (219)
T ss_dssp             HHHHHHHTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHH
T ss_pred             HHHHHHhhcccEEEeccCccCCHHHhcccCCcceEEEEEeCcHHHHHHHHHh
Confidence            4555666688999999884 44457777889999999999999999875443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.80  E-value=0.024  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.||++|..++|||||+|.|++..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCC
Confidence            458999999999999999999863

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.02  Score=47.29  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +.+++|+|++|+|||+|+-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            589999999999999999887653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.68  E-value=0.02  Score=48.47  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++|+|.|+.|+|||||++.+....
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            3689999999999999999987653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.28  E-value=0.035  Score=46.80  Aligned_cols=39  Identities=23%  Similarity=0.337  Sum_probs=27.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG  152 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g  152 (264)
                      -|.|+|-+.||||||.++|....+.  ...-|.||-.|-.|
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~--~~~ypf~ti~pn~g   42 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTG   42 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCc--cccCCCCCCCCceE
Confidence            5899999999999999999987653  12335677776554

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.25  E-value=0.016  Score=51.95  Aligned_cols=51  Identities=8%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             HHHHHHHHcCCe-EEEEcCHHHHHHHhc-CCCC--cEEEEEeCCChHHHHHHHHh
Q psy14166        192 DSVLELVNSGRV-AVLNPAYQSLKVLRS-PAFK--PLVLFIAPPPFAALKESRIT  242 (264)
Q Consensus       192 ~si~~vl~~Gki-~vld~~~~~~~~Lr~-~~~~--p~vIfI~pps~e~l~~~r~~  242 (264)
                      +-++..+..|.+ ||...+++-.+.+.. ..|.  -.+|.|.+||.+...++.+.
T Consensus       141 ~~Lkp~L~rg~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~  195 (387)
T d1qvra2         141 NMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRG  195 (387)
T ss_dssp             ---HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHH
Confidence            456677889987 899999987776642 3332  24799999998877666544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.12  E-value=0.025  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .++|+||||+|||.|++.|+...
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            45557999999999999999873

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.01  E-value=0.032  Score=44.01  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=23.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      ++-+|.|.|+-||||||+.+.|++..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34689999999999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.66  E-value=0.038  Score=46.78  Aligned_cols=24  Identities=21%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +.||++|..++|||||+|.|++..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999863

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.36  E-value=0.039  Score=40.86  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=21.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        108 TLRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +..+..+|.+|.|+|||+++-.++...
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHc
Confidence            355889999999999999886655443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.064  Score=47.27  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=17.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHH
Q psy14166        110 RRPVVLIGPSGVGRSELKRRL  130 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L  130 (264)
                      +++++|.||+|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            479999999999999987543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.073  Score=44.11  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+.++|.||+++||||+++.+.-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            47999999999999999988653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.83  E-value=0.067  Score=46.83  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      -.|+|-|+-||||||+++.|.+...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            4789999999999999999998753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.095  Score=44.21  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++++.|.||+|+|||||+-.++..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH
Confidence            5789999999999999999887764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.18  E-value=0.075  Score=45.04  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      |-|+|+|..|+|||||...|+-.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Confidence            57999999999999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.12  E-value=0.081  Score=43.34  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      +...++|.||+++|||.++..|+...
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            45899999999999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.01  E-value=0.061  Score=47.11  Aligned_cols=25  Identities=32%  Similarity=0.577  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      ..|+|-|+-||||||+++.|.+...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            3588999999999999999987653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.94  E-value=0.075  Score=46.66  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=19.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        110 RRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       110 ~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+-++|+|++|+|||++++.|+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            36799999999999999876664

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.93  E-value=0.066  Score=46.85  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .|+|-|+-||||||+++.|.+...
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999998754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.63  E-value=0.11  Score=42.76  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHh
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      ++++|.||+.+||||+++.+.-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            5899999999999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.25  E-value=0.095  Score=39.51  Aligned_cols=26  Identities=23%  Similarity=0.153  Sum_probs=22.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      .+=.|.|.|-||+|||||++.|....
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.16  E-value=0.072  Score=44.05  Aligned_cols=17  Identities=18%  Similarity=0.579  Sum_probs=14.2

Q ss_pred             CeEEEEcCCCCCHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELK  127 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~  127 (264)
                      .+++|+|++|+||||++
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            46788899999999754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.06  E-value=0.19  Score=39.89  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALD  134 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~  134 (264)
                      -|+|+|-..+|||||+++|....
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.13  Score=44.22  Aligned_cols=24  Identities=13%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      +|..+.|+|++|+|||+|+..++.
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHH
Confidence            689999999999999999998886

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.01  E-value=0.078  Score=44.40  Aligned_cols=17  Identities=18%  Similarity=0.628  Sum_probs=14.0

Q ss_pred             CeEEEEcCCCCCHHHHH
Q psy14166        111 RPVVLIGPSGVGRSELK  127 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~  127 (264)
                      .+++|.|++|+||||++
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            35788899999999765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=88.74  E-value=0.15  Score=40.05  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      -|+++|-..+|||||+++|.....
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhhh
Confidence            469999999999999999986543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.61  E-value=0.15  Score=42.33  Aligned_cols=25  Identities=36%  Similarity=0.622  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166        111 RPVVLIGPSGVGRSELKRRLIALDP  135 (264)
Q Consensus       111 r~ivLiGpsGvGKsTL~~~L~~~~p  135 (264)
                      .+|+|.|+.|+||+++++.|....+
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcC
Confidence            6899999999999999999976543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.91  E-value=0.2  Score=42.15  Aligned_cols=28  Identities=21%  Similarity=0.438  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      +...++|.||.++|||++++.|+...+.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4579999999999999999999988753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.84  E-value=0.089  Score=46.16  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      ++|.+..+...+..-|-|+|+|..++|||||+.+|+..
T Consensus         3 s~~~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2           3 TVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             CHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            45666666655554467999999999999999999854

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.23  Score=40.61  Aligned_cols=24  Identities=21%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+++|++.|-=||||||++-.|+.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999998655544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.12  E-value=0.25  Score=41.71  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++++.|.||+|+|||+|+-.++..
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHH
Confidence            5799999999999999998777653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.01  E-value=0.25  Score=41.70  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .++++.|.||+|+|||+|+..++..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHH
Confidence            5789999999999999999887764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.85  E-value=0.13  Score=36.89  Aligned_cols=19  Identities=21%  Similarity=0.097  Sum_probs=16.3

Q ss_pred             CCCeEEEEcCCCCCHHHHH
Q psy14166        109 LRRPVVLIGPSGVGRSELK  127 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~  127 (264)
                      +++.++|.+|+|+|||..+
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            5688999999999999655

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=0.38  Score=39.33  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      .+++|.++|--||||||++-.|+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHH
Confidence            348999999999999997665554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.60  E-value=0.36  Score=40.97  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      +|..+.|+|++|+|||+|+..++..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            6788999999999999998888754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.17  E-value=0.33  Score=38.71  Aligned_cols=25  Identities=12%  Similarity=0.007  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166        109 LRRPVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       109 ~~r~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      .+.-++|.||+|+||++++..|+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.17  E-value=0.37  Score=38.24  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166        112 PVVLIGPSGVGRSELKRRLIALDPD  136 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~~p~  136 (264)
                      ++.|+|++.||||..+..|+...+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~~   25 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAPQ   25 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCCC
Confidence            4789999999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=81.77  E-value=0.45  Score=37.87  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Q psy14166        112 PVVLIGPSGVGRSELKRRLIAL  133 (264)
Q Consensus       112 ~ivLiGpsGvGKsTL~~~L~~~  133 (264)
                      -|+++|=.++|||||+++|...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999753

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.05  E-value=0.53  Score=44.67  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=25.3

Q ss_pred             chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166         96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIA  132 (264)
Q Consensus        96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~  132 (264)
                      +|..+....    +...|+|.|-||||||+-.+.++.
T Consensus        76 Ay~~l~~~~----~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          76 AYRSMRQSQ----ENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             HHHHHHHHC----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcC----CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            466666543    346999999999999998887654