Psyllid ID: psy14168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGAWSQ
cccccccHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccc
cccEEEcHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHcEEEEccccccHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEHHHHHccHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccc
MDSTVVNREGIEKLLsmlptdeeKCKILEAvsanpgvplgsaeNFLLELSNINELVARLKLWAFKLDYENLEREKLlsmlptdeeKCKILEAvsanpgvplgsaeNFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIflngtevkgfqieyltkvpevkdtvhkHSLLHHLCDLvlhqfpqstdlyseigpvtraskvdFDELASSLRRMETECKASFDYLKLIIKhdgsatsvkvktqgawsq
mdstvvnregiEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSeigpvtraskVDFDELASSLRRMETECKASFDYLKLIIkhdgsatsvkvktqgawsq
MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGAWSQ
***********************KCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHD****************
*DSTVVNREGIEK*****************************ENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKI**********PLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASF*******************T******
MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGS**************
MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGAWSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q2V2M9 1422 FH1/FH2 domain-containing yes N/A 0.735 0.142 0.619 7e-68
Q76LL6 1578 FH1/FH2 domain-containing yes N/A 0.735 0.128 0.619 1e-67
Q6P9Q4 1197 FH1/FH2 domain-containing no N/A 0.677 0.156 0.582 2e-58
Q9Y613 1164 FH1/FH2 domain-containing no N/A 0.677 0.160 0.572 2e-58
P48608 1091 Protein diaphanous OS=Dro no N/A 0.623 0.157 0.308 5e-18
Q54WH2 1218 Formin-A OS=Dictyostelium yes N/A 0.644 0.146 0.247 5e-12
Q9C6S11230 Formin-like protein 14 OS yes N/A 0.659 0.147 0.257 2e-11
Q54N00 1087 Formin-H OS=Dictyostelium no N/A 0.681 0.172 0.276 3e-11
Q8BPM0 1077 Disheveled-associated act no N/A 0.536 0.137 0.276 4e-11
Q7XWS71669 Formin-like protein 12 OS yes N/A 0.739 0.122 0.277 4e-11
>sp|Q2V2M9|FHOD3_HUMAN FH1/FH2 domain-containing protein 3 OS=Homo sapiens GN=FHOD3 PE=1 SV=2 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 158/205 (77%), Gaps = 2/205 (0%)

Query: 56   VARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNIN 115
            +A L    + L+ E +E  K+L+M+PTDEEK KI EA  ANP +PLGSAE FLL LS+I+
Sbjct: 984  IAILNFDEYALNKEGIE--KILTMIPTDEEKQKIQEAQLANPEIPLGSAEQFLLTLSSIS 1041

Query: 116  ELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE 175
            EL ARL LWAFK+DYE  E+EVAEPL+DLK+G+D L  N T   ILSTLL+IG FLNGT 
Sbjct: 1042 ELSARLHLWAFKMDYETTEKEVAEPLLDLKEGIDQLENNKTLGFILSTLLAIGNFLNGTN 1101

Query: 176  VKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDEL 235
             K F++ YL KVPEVKDTVHK SLLHH+C +V+  FP S+DLYSEIG +TR++KVDFD+L
Sbjct: 1102 AKAFELSYLEKVPEVKDTVHKQSLLHHVCTMVVENFPDSSDLYSEIGAITRSAKVDFDQL 1161

Query: 236  ASSLRRMETECKASFDYLKLIIKHD 260
              +L +ME  CKAS+D+LK I KH+
Sbjct: 1162 QDNLCQMERRCKASWDHLKAIAKHE 1186
Actin-organizing protein that may cause stress fiber formation together with cell elongation.
Homo sapiens (taxid: 9606)
>sp|Q76LL6|FHOD3_MOUSE FH1/FH2 domain-containing protein 3 OS=Mus musculus GN=Fhod3 PE=1 SV=1 Back     alignment and function description
>sp|Q6P9Q4|FHOD1_MOUSE FH1/FH2 domain-containing protein 1 OS=Mus musculus GN=Fhod1 PE=2 SV=3 Back     alignment and function description
>sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Homo sapiens GN=FHOD1 PE=1 SV=3 Back     alignment and function description
>sp|P48608|DIA_DROME Protein diaphanous OS=Drosophila melanogaster GN=dia PE=2 SV=2 Back     alignment and function description
>sp|Q54WH2|FORA_DICDI Formin-A OS=Dictyostelium discoideum GN=forA PE=1 SV=1 Back     alignment and function description
>sp|Q9C6S1|FH14_ARATH Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3 Back     alignment and function description
>sp|Q54N00|FORH_DICDI Formin-H OS=Dictyostelium discoideum GN=forH PE=1 SV=1 Back     alignment and function description
>sp|Q8BPM0|DAAM1_MOUSE Disheveled-associated activator of morphogenesis 1 OS=Mus musculus GN=Daam1 PE=1 SV=4 Back     alignment and function description
>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp. japonica GN=FH12 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
340714873 2697 PREDICTED: hypothetical protein LOC10064 0.764 0.078 0.705 1e-81
380029537 2715 PREDICTED: uncharacterized protein LOC10 0.764 0.077 0.700 7e-81
328780025 2747 PREDICTED: hypothetical protein LOC40978 0.764 0.076 0.700 8e-81
350414953 2696 PREDICTED: hypothetical protein LOC10074 0.764 0.078 0.700 9e-81
383865148 1140 PREDICTED: FH1/FH2 domain-containing pro 0.764 0.185 0.705 1e-80
332021730 1116 FH1/FH2 domain-containing protein 3 [Acr 0.764 0.189 0.705 2e-80
307180845 1134 FH1/FH2 domain-containing protein 3 [Cam 0.764 0.186 0.705 3e-80
322798807 1135 hypothetical protein SINV_01606 [Solenop 0.764 0.185 0.705 3e-80
307191734 979 FH1/FH2 domain-containing protein 3 [Har 0.764 0.215 0.705 4e-80
251829648 1161 jazigo [Apis mellifera] 0.764 0.181 0.700 5e-80
>gi|340714873|ref|XP_003395947.1| PREDICTED: hypothetical protein LOC100648204 [Bombus terrestris] Back     alignment and taxonomy information
 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 184/214 (85%), Gaps = 3/214 (1%)

Query: 56   VARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNIN 115
            +A LK+ A  ++ E +E  KLL+MLPT+EE+ +I EA +ANP +PLGSAE FLL L++I+
Sbjct: 2287 IAILKMDATIMNREGIE--KLLTMLPTEEERSRIQEAQAANPDLPLGSAEQFLLTLASIS 2344

Query: 116  ELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE 175
            EL ARLKLWAFKLD+EN E+E+A+PLMDLKQGM+ LR N TF+ ILSTLLSIGIFLNG E
Sbjct: 2345 ELPARLKLWAFKLDFENSEKEIADPLMDLKQGMETLRVNKTFRGILSTLLSIGIFLNGNE 2404

Query: 176  VKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDEL 235
            VKGFQ+EYL KVPEVKDTVHKHSLLHHLC +V+ +FP STDLYSEIG VTRASK+DFDEL
Sbjct: 2405 VKGFQLEYLAKVPEVKDTVHKHSLLHHLCHMVMEKFPDSTDLYSEIGAVTRASKIDFDEL 2464

Query: 236  ASSLRRMETECKASFDYLKLIIKHDGSATSVKVK 269
            A+++ ++E+ECKAS+DYLKLI KHDGS T +KVK
Sbjct: 2465 AANIGKLESECKASWDYLKLIAKHDGS-TMMKVK 2497

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380029537|ref|XP_003698426.1| PREDICTED: uncharacterized protein LOC100869084 [Apis florea] Back     alignment and taxonomy information
>gi|328780025|ref|XP_393280.4| PREDICTED: hypothetical protein LOC409786 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350414953|ref|XP_003490485.1| PREDICTED: hypothetical protein LOC100740589 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383865148|ref|XP_003708037.1| PREDICTED: FH1/FH2 domain-containing protein 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332021730|gb|EGI62086.1| FH1/FH2 domain-containing protein 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307180845|gb|EFN68683.1| FH1/FH2 domain-containing protein 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322798807|gb|EFZ20354.1| hypothetical protein SINV_01606 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307191734|gb|EFN75176.1| FH1/FH2 domain-containing protein 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|251829648|gb|ACT21202.1| jazigo [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
FB|FBgn0261259 2511 Fhos [Drosophila melanogaster 0.731 0.080 0.663 1.3e-66
UNIPROTKB|E1BUP4 1241 FHOD3 "Uncharacterized protein 0.721 0.160 0.631 1.9e-63
UNIPROTKB|E1C972 1253 FHOD3 "Uncharacterized protein 0.721 0.158 0.631 2e-63
UNIPROTKB|K7EKZ0 375 FHOD3 "FH1/FH2 domain-containi 0.735 0.541 0.619 4.2e-63
UNIPROTKB|K7EP24 635 FHOD3 "FH1/FH2 domain-containi 0.735 0.319 0.619 4.2e-63
UNIPROTKB|F1PDT3 1233 FHOD3 "Uncharacterized protein 0.735 0.164 0.624 4.8e-63
UNIPROTKB|J9NVV0 1356 FHOD3 "Uncharacterized protein 0.735 0.149 0.624 5.3e-63
UNIPROTKB|J9PAL1 1395 FHOD3 "Uncharacterized protein 0.735 0.145 0.624 6.2e-63
ZFIN|ZDB-GENE-081028-61 1549 si:ch211-209d1.1 "si:ch211-209 0.677 0.120 0.663 7.3e-63
RGD|2322319 480 Fhod3 "formin homology 2 domai 0.735 0.422 0.619 8.8e-63
FB|FBgn0261259 Fhos [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 693 (249.0 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 136/205 (66%), Positives = 167/205 (81%)

Query:    59 LKLWAFKLDYENLERE---KLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNIN 115
             +K    K+D   + RE   KLL+MLPTDEE+ KI EA  +NP +PLGSAE FLL L++I+
Sbjct:  2095 IKTAILKMDATVVTREGIDKLLNMLPTDEERGKIQEAQLSNPELPLGSAEQFLLTLASIS 2154

Query:   116 ELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE 175
             EL ARLKLWAF+LD++N E+E+AEPLMDLKQG++ILR+N TF++ILSTLLS+GIFLNG  
Sbjct:  2155 ELEARLKLWAFRLDFDNSEKEIAEPLMDLKQGIEILRQNRTFRSILSTLLSVGIFLNGAP 2214

Query:   176 VKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDEL 235
             VKGFQIEYL KVPEVKDTVHKHSLLHHLC +V+     ++DLYSEIGP+TRASK DF +L
Sbjct:  2215 VKGFQIEYLAKVPEVKDTVHKHSLLHHLCHMVMESSSDTSDLYSEIGPITRASKADFTDL 2274

Query:   236 ASSLRRMETECKASFDYLKLIIKHD 260
             A +L ++E ECKA +D LKLI KHD
Sbjct:  2275 AHNLNQLEAECKACWDRLKLIAKHD 2299
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0030036 "actin cytoskeleton organization" evidence=IEA
GO:0003012 "muscle system process" evidence=IEP;IGI
GO:0046716 "muscle cell homeostasis" evidence=IGI;IMP
UNIPROTKB|E1BUP4 FHOD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C972 FHOD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K7EKZ0 FHOD3 "FH1/FH2 domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EP24 FHOD3 "FH1/FH2 domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDT3 FHOD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVV0 FHOD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAL1 FHOD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081028-61 si:ch211-209d1.1 "si:ch211-209d1.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2322319 Fhod3 "formin homology 2 domain containing 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2V2M9FHOD3_HUMANNo assigned EC number0.61950.73550.1427yesN/A
Q76LL6FHOD3_MOUSENo assigned EC number0.61950.73550.1286yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 1e-44
smart00498392 smart00498, FH2, Formin Homology 2 Domain 1e-27
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 2e-11
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  154 bits (391), Expect = 1e-44
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 6/179 (3%)

Query: 74  EKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENL 133
           E LL M PT EE  K+ E         LG AE FLLELS I  L  RL+   FK  +E  
Sbjct: 118 ENLLKMAPTKEELKKLKEY--KGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEE 175

Query: 134 EREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT----EVKGFQIEYLTKVPE 189
             E+   L  L+   + LR +  FK +L  +L++G ++N        KGF++  L K+ +
Sbjct: 176 VEELKPSLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSD 235

Query: 190 VKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKA 248
            K T +K +LLH+L  ++  + P   D  SE+  V +A+KVD ++L   ++ +E   K 
Sbjct: 236 TKSTDNKTTLLHYLVKIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKK 294

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
smart00498 432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1924|consensus 1102 100.0
KOG1925|consensus 817 100.0
KOG1923|consensus 830 100.0
KOG1922|consensus 833 99.95
KOG1925|consensus 817 97.54
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information 
Probab=100.00  E-value=1.5e-54  Score=417.33  Aligned_cols=260  Identities=25%  Similarity=0.323  Sum_probs=239.3

Q ss_pred             ccChhhhhHHhccCCCh-------------------hHHHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccC
Q psy14168          5 VVNREGIEKLLSMLPTD-------------------EEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFK   65 (276)
Q Consensus         5 ~~~~~~iE~lf~~~~~~-------------------~~~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~   65 (276)
                      .++.+.||.+|+..++.                   ++++.|+++|+||++|+|++++     ++..++++||+.||...
T Consensus        36 ~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~ni~I~L~~l~-----~~~~ei~~ai~~~d~~~  110 (432)
T smart00498       36 EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQNLAILLRKLH-----MSYEEICEAILEGDEDV  110 (432)
T ss_pred             ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhhHHHHHHhcC-----CCHHHHHHHHHhcChhh
Confidence            58899999999863221                   1123467799999999999974     78888999999999999


Q ss_pred             CChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168         66 LDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLK  145 (276)
Q Consensus        66 L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~  145 (276)
                      |+.+.+  +.|++++||+||+..+++|.++++ +.|++||||++.|++||++..||+||+|+.+|++.++++.+.+..+.
T Consensus       111 l~~e~l--~~L~~~~Pt~eE~~~l~~~~~~~~-~~L~~~Eqfl~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~  187 (432)
T smart00498      111 LSVDLL--EQLLKYAPTKEELKKLREYKEEDP-EELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDLKPQLEKVE  187 (432)
T ss_pred             CCHHHH--HHHHhhCcCHHHHHHHHHhcccch-hhcchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999  999999999999999999953334 68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHhhhhcCC----CcccceeccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccc
Q psy14168        146 QGMDILRRNPTFKAILSTLLSIGIFLNG----TEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEI  221 (276)
Q Consensus       146 ~a~~~l~~S~~l~~lL~~vL~iGN~lNG----g~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL  221 (276)
                      .||++|++|+.|+.+|++||++||||||    |+|+||+|+||.||.|||++|+++|||||||+.+.+++|++++|.+||
T Consensus       188 ~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el  267 (432)
T smart00498      188 AACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKIIRKKYPDLLDFYSDL  267 (432)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHHHHHHhChhhccchhhh
Confidence            9999999999999999999999999994    489999999999999999999999999999999999999999999999


Q ss_pred             cchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhc
Q psy14168        222 GPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGA  273 (276)
Q Consensus       222 ~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  273 (276)
                      ++|..|++++ +++.+++++++++++.++..+..++.+...++.|..+|..|
T Consensus       268 ~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F  318 (432)
T smart00498      268 HHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPF  318 (432)
T ss_pred             ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHH
Confidence            9999999999 99999999999999999998888888877678999888765

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>KOG1922|consensus Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 3e-12
2j1d_G 483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 4e-12
3o4x_E 467 Crystal Structure Of Complex Between Amino And Carb 7e-09
3obv_E 457 Autoinhibited Formin Mdia1 Structure Length = 457 9e-09
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 1e-08
1ux4_A410 Crystal Structures Of A Formin Homology-2 Domain Re 2e-07
1ux5_A411 Crystal Structures Of A Formin Homology-2 Domain Re 2e-07
1y64_B443 Bni1p Formin Homology 2 Domain Complexed With Atp-a 3e-07
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 3e-07
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
           +  A+ FL E+S IN    RL+   FK  +     EV   +  ++ G + + R+   K +
Sbjct: 161 MAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQL 220
Query: 161 LSTLLSIGIFLNGTE---VKGFQIEYLTKVPEVKDTVHKH-SLLHHLCDLVLHQFPQSTD 216
           L  +L+ G ++N  +     GF+I  L K+ + K ++ K+ +LLH+L  +V +++P   +
Sbjct: 221 LEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLN 280
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETECKA 248
           L  E+  + +A+KV+  EL   +  + +  KA
Sbjct: 281 LNEELRDIPQAAKVNMTELDKEISTLRSGLKA 312
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Tethered-Dimer Architecture Length = 410 Back     alignment and structure
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Flexibly Tethered Dimer Architecture Length = 411 Back     alignment and structure
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin Length = 443 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 3e-44
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 1e-12
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 4e-44
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 2e-12
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 5e-44
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 6e-07
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 1e-40
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  154 bits (391), Expect = 3e-44
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 59  LKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELV 118
           L++    L    ++   L+  +P  E+   + E         L  +E F + +  +  L 
Sbjct: 110 LEVNEAVLTESMIQ--NLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLR 165

Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT---- 174
            RL    FKL +      +   ++ +    + LR++  F ++L   L +G ++N      
Sbjct: 166 PRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNA 225

Query: 175 EVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDE 234
              GF I +L K+ + K    K +LLH L +L  +  P+      E+  V +AS+V  + 
Sbjct: 226 GAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAEN 285

Query: 235 LASSLRRMETECK 247
           L  SL +M+ +  
Sbjct: 286 LQKSLDQMKKQIA 298
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 100.0
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 100.0
4eah_A402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
Probab=100.00  E-value=6.1e-58  Score=427.22  Aligned_cols=244  Identities=21%  Similarity=0.293  Sum_probs=210.5

Q ss_pred             hhHHHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCC
Q psy14168         21 DEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVP  100 (276)
Q Consensus        21 ~~~~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~  100 (276)
                      +++++.|+++||||++|+|++++     ++..++++||+.||..+|+.+.|  +.|++++||+||++.+++|. +++ ..
T Consensus         6 ~~~i~vLD~kraqNi~I~L~~~k-----~~~~ei~~aI~~~D~~~L~~e~l--~~L~~~~Pt~eE~~~l~~~~-~~~-~~   76 (340)
T 1v9d_A            6 VKELKVLDSKTAQNLSIFLGSFR-----MPYQEIKNVILEVNEAVLTESMI--QNLIKQMPEPEQLKMLSELK-EEY-DD   76 (340)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHTCTTTCCHHHH--HHHHHHSCCHHHHHHHHTCG-GGG-GG
T ss_pred             CCeeeecCHHHHhHHHHHHhhcC-----CCHHHHHHHHHhCCcccCCHHHH--HHHHccCCCHHHHHHHHHhh-CCh-hh
Confidence            34556678899999999999975     78888999999999999999999  99999999999999999995 444 58


Q ss_pred             CChHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcC-C---Ccc
Q psy14168        101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLN-G---TEV  176 (276)
Q Consensus       101 L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lN-G---g~A  176 (276)
                      |++||||++.|+.||++..||+||.|+.+|++.++++.+.+..+..||++|++|++|+.+|++||++||||| |   |+|
T Consensus        77 L~~~EqF~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A  156 (340)
T 1v9d_A           77 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGA  156 (340)
T ss_dssp             SCHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC-------------------
T ss_pred             cCHHHHHHHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 4   599


Q ss_pred             cceeccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168        177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLI  256 (276)
Q Consensus       177 ~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~  256 (276)
                      +||+|+||.||.||||+|+++|||||||+++.+++|++++|.+||++|..|++||+++|.+++.+|+++++.++.+++.+
T Consensus       157 ~GFkL~sL~KL~d~Ks~d~k~TLLh~lv~~~~~~~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~  236 (340)
T 1v9d_A          157 FGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF  236 (340)
T ss_dssp             -----CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eeeehHHHHhhhhhcCCCCCccHHHHHHHHHHHhCchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HhcCCCcchhhhhhhhc
Q psy14168        257 IKHDGSATSVKVKTQGA  273 (276)
Q Consensus       257 ~~~~~~~~~~~~~~~~~  273 (276)
                      ++...+.++|+.+|..|
T Consensus       237 ~~~~~~~d~f~~~m~~F  253 (340)
T 1v9d_A          237 PAATDEKDKFVEKMTSF  253 (340)
T ss_dssp             CCCSSSSCCHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHH
Confidence            66555668999999876
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 2e-34
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 2e-33
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 6e-04
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 2e-34
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 6/178 (3%)

Query: 74  EKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENL 133
           + L+  +P  E+   + E         L  +E F + +  +  L  RL    FKL +   
Sbjct: 47  QNLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQ 104

Query: 134 EREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE----VKGFQIEYLTKVPE 189
              +   ++ +    + LR++  F ++L   L +G ++N         GF I +L K+ +
Sbjct: 105 VENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRD 164

Query: 190 VKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECK 247
            K    K +LLH L +L  +  P+      E+  V +AS+V  + L  SL +M+ +  
Sbjct: 165 TKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIA 222
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-55  Score=403.88  Aligned_cols=242  Identities=20%  Similarity=0.281  Sum_probs=208.9

Q ss_pred             HHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCCh
Q psy14168         24 KCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGS  103 (276)
Q Consensus        24 ~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~  103 (276)
                      +.-++++|+||++|+|++++     +++.++++||+.||..+|+.|.+  +.|++++||+||++.+++|. ++. +.|++
T Consensus         4 i~vLd~kr~~ni~I~L~~~k-----~~~~~i~~ai~~~D~~~l~~e~l--~~L~~~~Pt~eE~~~l~~~~-~~~-~~L~~   74 (332)
T d1v9da_           4 LKVLDSKTAQNLSIFLGSFR-----MPYQEIKNVILEVNEAVLTESMI--QNLIKQMPEPEQLKMLSELK-EEY-DDLAE   74 (332)
T ss_dssp             CSSSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHTCTTTCCHHHH--HHHHHHSCCHHHHHHHHTCG-GGG-GGSCH
T ss_pred             eEeccHHHHHHHHHHHhhCC-----cCHHHHHHHHHhCCcccCCHHHH--HHHHHhCcCHHHHHHHHHhc-CCh-hhcCh
Confidence            34467899999999999975     78888999999999999999999  99999999999999999985 544 58999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcCC----Ccccce
Q psy14168        104 AENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNG----TEVKGF  179 (276)
Q Consensus       104 ~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lNG----g~A~GF  179 (276)
                      ||+|+++|++||+++.||+||.|+.+|++.++++.+.+..+..||+++++|++|+.+|++||++||||||    |+|+||
T Consensus        75 ~E~f~~~l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GF  154 (332)
T d1v9da_          75 SEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGF  154 (332)
T ss_dssp             HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC----------------------
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcchhcccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999995    489999


Q ss_pred             eccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14168        180 QIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKH  259 (276)
Q Consensus       180 kL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~  259 (276)
                      +|+||.||.++|++|+++||||||++.+.+++|++++|.+||++|..|++++++++.+++++|++++..++.+++.....
T Consensus       155 kL~sL~kL~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~  234 (332)
T d1v9da_         155 NISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA  234 (332)
T ss_dssp             --CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CHHHHHhHhhccCCCCCccHHHHHHHHHHHhCchhccchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987666


Q ss_pred             CCCcchhhhhhhhcc
Q psy14168        260 DGSATSVKVKTQGAW  274 (276)
Q Consensus       260 ~~~~~~~~~~~~~~~  274 (276)
                      ..+.++|+.+|..|-
T Consensus       235 ~~~~d~f~~~~~~Fl  249 (332)
T d1v9da_         235 TDEKDKFVEKMTSFV  249 (332)
T ss_dssp             SSSSCCHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHH
Confidence            566689999998763
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure