Psyllid ID: psy14212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meelflhhphnhllHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Flexible Loop (DISEMBL)
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYeeqqgnteTLTELMSALQVS
Low Complexity Region (SEG)
MEElflhhphnhllhQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Disordered region (IsUnstruct)
****FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA*******QMMWVS***************************
Disordered Region (DISOPRED)
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC********************MMWVSKHL*****************MSALQV*
Disordered Region (DISEMBL)
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Disordered Region (DISPRO)
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS*AKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q6TGY8	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.381	4e-19
Q5R882	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.364	4e-18
Q15006	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.364	4e-18
B0BNG0	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.355	7e-18
Q9CRD2	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.364	8e-18
Q5M7J9	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.347	3e-17
Q6INS3	297	ER membrane protein compl	N/A	N/A	1.0	0.373	0.347	3e-17
Q5E993	297	ER membrane protein compl	yes	N/A	1.0	0.373	0.347	5e-17
Q8AVU9	297	ER membrane protein compl	N/A	N/A	1.0	0.373	0.338	1e-16

>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +PHNHL  ++YA++ YTQGGLEN+ELA  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            +  S K SA  KK+  K   W +  ++R Y+       E + + + + E++ +LQ++
Sbjct: 238 HIAASPKVSAKVKKDNVKYAAWAAAQISRAYQMAGRGKKENKCSVKAVEEMLESLQIT 295

Danio rerio (taxid: 7955)

>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + R Y+       E + + + + +++  LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

Pongo abelii (taxid: 9601)

>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + R Y+       E + + + + +++  LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

Homo sapiens (taxid: 9606)

>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  +   W +  + R Y+       E + + + + +++  LQ++
Sbjct: 238 HIASNPKASAKMKKDNIRYAGWAANQINRAYQFAGRSKKETKSSLKAVEDMLETLQIT 295

Rattus norvegicus (taxid: 10116)

>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + R Y+       E + + + + +++  LQ++
Sbjct: 238 HIASNPKASAKMKKDNIKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

Mus musculus (taxid: 10090)

>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ LN  N+RAL+GL +S  
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSV 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + + Y+       + Q + + + +++  LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295

Xenopus tropicalis (taxid: 8364)

>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ LN  N+RAL+GL +S  
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSV 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + + Y+       + Q + + + +++  LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWAASQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295

Xenopus laevis (taxid: 8355)

>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL + +P+NHL  Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S  
Sbjct: 178 LEELMMTNPYNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + + Y+       E + + + + +++  LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINKAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

Bos taurus (taxid: 9913)

>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 7/118 (5%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ LN  ++RAL+GL +S  
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHSMRALFGLYMSSV 237

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
            + ++ K SA  KK+  K   W +  + + Y+       + Q + + + +++  LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
91077750	278	PREDICTED: similar to CG17556 CG17556-PA	0.981	0.392	0.558	2e-27
307199386	1367	Tetratricopeptide repeat protein 35-B [H	0.990	0.080	0.508	9e-26
225718804	289	Tetratricopeptide repeat protein 35 [Cal	0.837	0.321	0.559	2e-24
307177773	289	Tetratricopeptide repeat protein 35-B [C	0.990	0.380	0.491	5e-24
290462971	290	Tetratricopeptide repeat protein 35 [Lep	0.837	0.320	0.548	2e-23
332019332	289	Tetratricopeptide repeat protein 35-B [A	0.990	0.380	0.473	4e-23
156550299	291	PREDICTED: tetratricopeptide repeat prot	0.990	0.378	0.482	8e-23
332375893	275	unknown [Dendroctonus ponderosae]	0.837	0.338	0.569	4e-22
350412349	289	PREDICTED: tetratricopeptide repeat prot	0.918	0.352	0.480	8e-22
48102403	289	PREDICTED: tetratricopeptide repeat prot	0.846	0.325	0.5	3e-21

>gi|91077750|ref|XP_966972.1| PREDICTED: similar to CG17556 CG17556-PA [Tribolium castaneum] gi|270002222|gb|EEZ98669.1| hypothetical protein TcasGA2_TC001201 [Tribolium castaneum]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL LH+PHNHLLHQRYADI YTQGGLENIELA S+Y  AI LN KN+RALYGL ++  
Sbjct: 170 VEELILHNPHNHLLHQRYADIKYTQGGLENIELARSYYCQAIKLNPKNVRALYGLYIATT 229

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS 111
            + TSAKCS+ KKKE  K   W    +  QY  +  N + + + + ALQ++
Sbjct: 230 AIATSAKCSSQKKKEAQKLSEWALNEIQNQY--KHSNIDDIEDRLGALQIN 278

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199386|gb|EFN80011.1| Tetratricopeptide repeat protein 35-B [Harpegnathos saltator]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 80/112 (71%), Gaps = 2/112 (1%)

Query: 1    MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
            MEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A+ LN  NIRALYGL L+ +
Sbjct: 1254 MEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFSQAVKLNPNNIRALYGLLLTTN 1313

Query: 61   QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTE--TLTELMSALQV 110
             + TSAKC A+KKKE  K   W SK + +QYE +  N +  T+  L+  LQ+
Sbjct: 1314 NIATSAKCPASKKKEAIKLSEWASKQIEKQYESKVSNEDVKTVERLLGQLQL 1365

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225718804|gb|ACO15248.1| Tetratricopeptide repeat protein 35 [Caligus clemensi]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 2   EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
           EELFLH+PHNH+ +QR+A+I YTQGG EN+E A  +Y  A+ LN  NIRALYGL L+C Q
Sbjct: 178 EELFLHNPHNHVFYQRFAEIKYTQGGFENLETAKYYYCHALQLNPNNIRALYGLLLTCSQ 237

Query: 62  VLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 94
           V++S KC+A KKK+  K + W    L + YEE+
Sbjct: 238 VISSPKCTALKKKDYQKIITWGKTELTKMYEEK 270

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177773|gb|EFN66770.1| Tetratricopeptide repeat protein 35-B [Camponotus floridanus]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           MEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A  LN  NIRALYGL L+ +
Sbjct: 176 MEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFCQAAKLNPNNIRALYGLLLTTN 235

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTET--LTELMSALQV 110
            + TS KC A+KKKE  K   W SK + +QYE +  N +   +  L+  LQ+
Sbjct: 236 NIATSPKCPASKKKEAVKLSEWASKQIEKQYESKVSNEDVKNIERLLGQLQL 287

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462971|gb|ADD24533.1| Tetratricopeptide repeat protein 35 [Lepeophtheirus salmonis] gi|290561284|gb|ADD38044.1| Tetratricopeptide repeat protein 35 [Lepeophtheirus salmonis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 67/93 (72%)

Query: 2   EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
           EELFLH+PHNH+ +QR+A+I YTQGG EN+E A  +Y  A+ LN  N RALYGL L+C Q
Sbjct: 179 EELFLHNPHNHIFYQRFAEIKYTQGGFENLETAKYYYCHALQLNPNNTRALYGLLLTCSQ 238

Query: 62  VLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 94
           V++S KC+A KKK+  K + W    L + YEE+
Sbjct: 239 VISSPKCTALKKKDYLKIITWGKIELTKMYEEK 271

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019332|gb|EGI59838.1| Tetratricopeptide repeat protein 35-B [Acromyrmex echinatior]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           MEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A  LN  NIRALYGL L+ +
Sbjct: 176 MEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFCQAAKLNPNNIRALYGLLLTTN 235

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTET--LTELMSALQV 110
            + TS KC ++KKKE  K   W S+ + +QYE +  N +   +  L+  LQ+
Sbjct: 236 NIATSPKCPSSKKKEAMKLSEWASRQIEKQYESKVTNEDVKNVERLLGQLQL 287

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550299|ref|XP_001603293.1| PREDICTED: tetratricopeptide repeat protein 35-A-like [Nasonia vitripennis]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 4/114 (3%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL LH+PHNHLLHQRYA+I Y+QGG +N+  A +++  AI LN  NIRALYGL L+ +
Sbjct: 176 IEELILHNPHNHLLHQRYAEIKYSQGGYDNMVTAKAYFSQAIKLNPNNIRALYGLLLTAN 235

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE----EQQGNTETLTELMSALQV 110
            +  S KC A+KKKE  K   WV+  + RQY+    E+  +T+ +  L++ LQ+
Sbjct: 236 NIALSPKCPASKKKETIKLSEWVANQIERQYKTKTAEENKDTKCIEGLLAQLQL 289

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375893|gb|AEE63087.1| unknown [Dendroctonus ponderosae]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           +EEL LH+PHNHLLHQRYADI YT GGLEN+E A S+Y  A+ +N KN+RALYGL L+  
Sbjct: 170 VEELILHNPHNHLLHQRYADIKYTIGGLENLETARSYYSQALKINPKNMRALYGLYLTSS 229

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEE 93
            + TSAKCS+ +KKE +K +    K + ++Y E
Sbjct: 230 ALSTSAKCSSQRKKEAAKLVERSLKEIKKRYSE 262

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412349|ref|XP_003489615.1| PREDICTED: tetratricopeptide repeat protein 35-B-like [Bombus impatiens]

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           MEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A  LN  NIRALYGL L+ +
Sbjct: 176 MEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAARLNPNNIRALYGLLLATN 235

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLT 102
            + TS KC ++KKK+  K   W +  + +QYE +  +    T
Sbjct: 236 NIATSPKCPSSKKKDAIKLSEWAANQIEKQYESKVSDENIKT 277

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48102403|ref|XP_395349.1| PREDICTED: tetratricopeptide repeat protein 35-B-like [Apis mellifera]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 68/94 (72%)

Query: 1   MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
           MEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A  LN  NIRALYGL L+ +
Sbjct: 176 MEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAARLNPNNIRALYGLLLASN 235

Query: 61  QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 94
            + TS KC ++KKK+  K   W +  + +QY+ +
Sbjct: 236 NIATSPKCPSSKKKDAIKLSEWAANQIEKQYQSK 269

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
ZFIN|ZDB-GENE-040625-82	297	emc2 "ER membrane protein comp	0.864	0.323	0.359	1.1e-14
UNIPROTKB|E1BRW7	297	TTC35 "Uncharacterized protein	0.864	0.323	0.339	7.5e-14
UNIPROTKB|Q15006	297	EMC2 "ER membrane protein comp	0.864	0.323	0.339	7.5e-14
UNIPROTKB|F1S1G1	297	EMC2 "Uncharacterized protein"	0.864	0.323	0.339	7.5e-14
UNIPROTKB|Q5R882	297	EMC2 "ER membrane protein comp	0.864	0.323	0.339	7.5e-14
MGI|MGI:1913986	297	Emc2 "ER membrane protein comp	0.864	0.323	0.339	9.9e-14
UNIPROTKB|Q5E993	297	EMC2 "ER membrane protein comp	0.864	0.323	0.330	1.7e-13
RGD|1310430	297	Emc2 "ER membrane protein comp	0.864	0.323	0.330	1.7e-13
UNIPROTKB|Q5M7J9	297	emc2 "ER membrane protein comp	0.783	0.292	0.386	1.1e-12
UNIPROTKB|Q6INS3	297	emc2-a "ER membrane protein co	0.783	0.292	0.386	1.1e-12

ZFIN|ZDB-GENE-040625-82 emc2 "ER membrane protein complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 37/103 (35%), Positives = 64/103 (62%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             ++YA++ YTQGGLEN+ELA  ++  A+ LN +N+RAL+GL +S   +  S K SA  KK+
Sbjct:   193 EQYAEVKYTQGGLENLELARKYFAQALKLNNRNMRALFGLYMSASHIAASPKVSAKVKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  ++R Y+       E + + + + E++ +LQ++
Sbjct:   253 NVKYAAWAAAQISRAYQMAGRGKKENKCSVKAVEEMLESLQIT 295

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BRW7 TTC35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 35/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKMKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NMKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0005739 "mitochondrion" evidence=IEA

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q15006 EMC2 "ER membrane protein complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 35/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1S1G1 EMC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 35/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0072546 "ER membrane protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5R882 EMC2 "ER membrane protein complex subunit 2" [Pongo abelii (taxid:9601)]

 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 35/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

MGI|MGI:1913986 Emc2 "ER membrane protein complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 9.9e-14, P = 9.9e-14
 Identities = 35/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKMKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NIKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=ISO

UNIPROTKB|Q5E993 EMC2 "ER membrane protein complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 34/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               K   W +  + + Y+       E + + + + +++  LQ++
Sbjct:   253 NMKYASWAASQINKAYQFAGRSKKETKYSLKAVEDMLETLQIT 295

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1310430 Emc2 "ER membrane protein complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 34/103 (33%), Positives = 63/103 (61%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q+YA++ YTQGGLEN+EL+  ++  A+ LN +N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKMKKD 252

Query:    76 ISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
               +   W +  + R Y+       E + + + + +++  LQ++
Sbjct:   253 NIRYAGWAANQINRAYQFAGRSKKETKSSLKAVEDMLETLQIT 295

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

UNIPROTKB|Q5M7J9 emc2 "ER membrane protein complex subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/88 (38%), Positives = 55/88 (62%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q++A++ YTQGGLEN+EL+  ++  A+ LN  N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSVHIASNPKASAKMKKD 252

Query:    76 ISKQMMWVSKHLARQYEEQQGNTETLTE 103
               K   W +  + + Y+   G T T T+
Sbjct:   253 NVKYATWATSQIKKAYQ-LAGRTMTDTQ 279

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q6INS3 emc2-a "ER membrane protein complex subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/88 (38%), Positives = 55/88 (62%)

Query:    16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 75
             Q++A++ YTQGGLEN+EL+  ++  A+ LN  N+RAL+GL +S   + ++ K SA  KK+
Sbjct:   193 QQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSVHIASNPKASAKMKKD 252

Query:    76 ISKQMMWVSKHLARQYEEQQGNTETLTE 103
               K   W +  + + Y+   G T T T+
Sbjct:   253 NVKYATWAASQIKKAYQ-LAGRTMTDTQ 279

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG3060|consensus	289		99.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.88
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.85
PRK15359	144	type III secretion system chaperone protein SscB;	97.71
PF13371	73	TPR_9: Tetratricopeptide repeat	97.59
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.57
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.38
PF13428	44	TPR_14: Tetratricopeptide repeat	97.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.14
PRK15359	144	type III secretion system chaperone protein SscB;	97.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.05
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.05
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.95
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.9
PRK12370	553	invasion protein regulator; Provisional	96.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.76
PRK11189	296	lipoprotein NlpI; Provisional	96.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.69
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.62
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.6
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.29
PF13431	34	TPR_17: Tetratricopeptide repeat	96.27
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.18
PRK12370	553	invasion protein regulator; Provisional	96.17
PRK11189	296	lipoprotein NlpI; Provisional	96.09
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.93
KOG1155|consensus	559		95.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.84
KOG1125|consensus	579		95.77
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.72
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.62
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.6
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.53
KOG1126|consensus	638		95.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.27
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.09
KOG0553|consensus	304		95.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.7
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.7
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.62
KOG1127|consensus	1238		94.53
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.4
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	93.94
KOG1173|consensus	611		93.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	93.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.84
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.81
KOG0553|consensus	304		93.77
PF13371	73	TPR_9: Tetratricopeptide repeat	93.62
KOG2076|consensus	895		93.59
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	93.53
KOG4626|consensus	966		93.43
PRK10803	263	tol-pal system protein YbgF; Provisional	93.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.26
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.95
PF13431	34	TPR_17: Tetratricopeptide repeat	92.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.77
KOG1173|consensus	611		92.76
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	91.79
KOG1174|consensus	564		91.71
PLN02789	320	farnesyltranstransferase	91.35
PRK11788	389	tetratricopeptide repeat protein; Provisional	91.16
KOG1155|consensus	559		90.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	90.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	90.39
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	90.39
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	90.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.23
PLN02789	320	farnesyltranstransferase	89.82
PRK15331	165	chaperone protein SicA; Provisional	89.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	89.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.02
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	88.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	88.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	87.94
KOG4626|consensus	966		87.86
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.41
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	86.03
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	86.0
KOG1126|consensus	638		85.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	85.46
PRK14574	822	hmsH outer membrane protein; Provisional	85.41
KOG0624|consensus	504		84.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	84.13
PRK15331	165	chaperone protein SicA; Provisional	84.09
PF13512	142	TPR_18: Tetratricopeptide repeat	83.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	83.08
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	82.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	82.05
PRK11906	458	transcriptional regulator; Provisional	81.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	81.83
PRK14574	822	hmsH outer membrane protein; Provisional	81.77
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	81.32
PRK11906	458	transcriptional regulator; Provisional	80.84
KOG0543|consensus	397		80.77
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	80.17

>KOG3060|consensus

Probab=99.97  E-value=3.7e-31  Score=209.27  Aligned_cols=111  Identities=35%  Similarity=0.565  Sum_probs=101.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhhhhhhhHHh--HHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE--ISK   78 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k~~~~~~~e--~~k   78 (111)
                      ||||+|++|+||.||+||||++||+||.||++.||||||+||++||.|+|||||+++|+++|.+.+|...+++++  ..+
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~K~~a~~~  256 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRKKDVAAPD  256 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhh
Confidence            699999999999999999999999999999999999999999999999999999999999999999888877777  569


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHhhccCC
Q psy14212         79 QMMWVSKHLARQYEEQQGNTETLTELMSALQVS  111 (111)
Q Consensus        79 L~~~A~~~L~~~Y~~~~~~~~~~~~~l~~~~~~  111 (111)
                      +..||..++.++|+...+++..++++|..++|+
T Consensus       257 l~~~aas~l~r~~q~s~~~~d~i~~~l~~lKi~  289 (289)
T KOG3060|consen  257 LISLAASQLERISQKSKNKLDLITAALENLKIT  289 (289)
T ss_pred             HHHhHHHHHHHHHHhccchhhHHHHHHHHhccC
Confidence            999999999999944333344899999999885

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.88  E-value=5.8e-05  Score=46.23  Aligned_cols=50  Identities=30%  Similarity=0.392  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +...+..+|.+++..|   +++.|+++|.++|+++|++..++|++-.|...+.
T Consensus         2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             SHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            5678889999999999   9999999999999999999999999999976554

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.85  E-value=1.8e-05  Score=48.21  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      +++-..|.++..+..+|.+++..|   +++.|+.+|.++++++|++
T Consensus        22 ~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   22 QALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCC
Confidence            344444555555555555555444   4455555555555544443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.71  E-value=8.6e-05  Score=52.81  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ..++-.+|.++.+|..+|.++...|   +++.|...|.++++++|++..++|++-.|-..+.
T Consensus        48 ~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         48 SWLVMAQPWSWRAHIALAGTWMMLK---EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            3466778888888888888888888   7888888888888888888888888877766443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.59  E-value=8.5e-05  Score=45.85  Aligned_cols=48  Identities=23%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA   51 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa   51 (111)
                      +|.++.++|.++..+..+|.+++.+|   ++..|+..|.++++++|++.-+
T Consensus        18 ~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen   18 LERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHH
Confidence            36788899999999999999999999   9999999999999999976543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.57  E-value=0.00018  Score=38.38  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      -++..+|.+++-.|   ++..|+++|-++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLG---NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCcCC
Confidence            35678899999999   9999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.47  E-value=0.00013  Score=44.68  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ++++|.++|+++..|..+|.+++-+|  ++.+.|+++|.+|++++|
T Consensus        26 ~~~ai~~~p~~~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   26 FEKAIELDPNNAEAYYNLGLAYMKLG--KDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHSTTHHHHHHHHHHHHHHTT--THHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHcCc
Confidence            36788999999999999999999888  369999999999999998

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.38  E-value=0.00039  Score=37.49  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      .+.++|.+++.+|   +++.|..+|.+||+++|+|
T Consensus         3 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLG---DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence            4678899999999   9999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.35  E-value=0.00055  Score=39.54  Aligned_cols=40  Identities=20%  Similarity=0.083  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      .+..+|+++.-.|   +++.|++.|.++|+++|+|..+++.+-
T Consensus         3 ~~~~la~~~~~~G---~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLG---QPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4567899999999   999999999999999999999998764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.34  E-value=0.0003  Score=42.76  Aligned_cols=44  Identities=18%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      ++++-.+|+|.-+...+|++++..|   +++.|+..+.+.++.+|++
T Consensus        15 ~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   15 EKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCH
Confidence            5667778888888888888888887   7888888888888888876

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.33  E-value=0.00033  Score=55.59  Aligned_cols=57  Identities=30%  Similarity=0.365  Sum_probs=51.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH--HhHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL--YGLALSCH   60 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal--yGL~l~~~   60 (111)
                      +|++|-++|+++..|.-+|.++=+.|   ..+.|.++|-+|+.+.|+|-+-+  ||-+||..
T Consensus        58 lekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          58 LEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            58899999999999999999999999   78999999999999999755554  99999975

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.31  E-value=0.0013  Score=38.63  Aligned_cols=52  Identities=29%  Similarity=0.395  Sum_probs=27.8

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      +++-..|.++..+..+|.+++..|   +++.|.++|.+++++.|.+..+++.+-.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (100)
T cd00189          25 KALELDPDNADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYYNLGL   76 (100)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence            344445555555555555555554   5555555555555555555544444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.14  E-value=0.0017  Score=43.94  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.++-.+|.+...+..+|..++..|   ++..|...|.++++++|++.++++.+-.|.....
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~   65 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQG---RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK   65 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            4677788888888888888888888   8888999999999988988888888877766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.12  E-value=0.0015  Score=46.37  Aligned_cols=48  Identities=13%  Similarity=0.025  Sum_probs=44.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL   52 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal   52 (111)
                      +.++-++|.++..|..+|.++...|   +++.|++.|.++++++|++...+
T Consensus        82 ~~Al~l~p~~~~a~~~lg~~l~~~g---~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         82 GHALMLDASHPEPVYQTGVCLKMMG---EPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHH
Confidence            5677899999999999999999999   99999999999999999988776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.10  E-value=0.0015  Score=53.08  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |+++|-.+|.+..++..+|.+++-.|   ++..|+..|.++|+++|++..+++-+-.+..++.+
T Consensus        25 ~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         25 YTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            35678888999999988899988888   88899999999999999888888877776666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.05  E-value=0.0015  Score=48.92  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +..+-.+|.|.-.+..+|.++...|   +++.|...|.+++++.|++...++++-.+
T Consensus        63 ~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         63 QDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567788999999999999999888   89999999999999999998888887665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.05  E-value=0.0015  Score=44.22  Aligned_cols=57  Identities=21%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +.++-.+|.++..+..+|.+++.+|   +...|.++|.++++++|++...+|-+-.|...
T Consensus        41 ~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        41 QLLAAYDPYNSRYWLGLAACCQMLK---EYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            4566779999999999999999999   99999999999999999999888877766553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.95  E-value=0.002  Score=48.29  Aligned_cols=62  Identities=21%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.++-+.|.+..++..+|.++|..+|....+.|++.|.++++++|++.++++-+-++.....
T Consensus        97 ~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g  158 (198)
T PRK10370         97 RQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA  158 (198)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence            56788999999999999999865544334699999999999999999999998877776443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.94  E-value=0.0013  Score=35.20  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      .+..+|.++...|   +++.|.++|-++++++|+|
T Consensus         3 ~~~~lg~~y~~~~---~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    3 AYYNLGKIYEQLG---DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT---SHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence            5677899999988   9999999999999999965

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.90  E-value=0.0043  Score=37.50  Aligned_cols=43  Identities=30%  Similarity=0.331  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212         17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus        17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      .+|..+|..|   +++.|++.|.++++..|++..++|++-.|..+.
T Consensus         2 ~~a~~~~~~g---~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~   44 (65)
T PF13432_consen    2 ALARALYQQG---DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ   44 (65)
T ss_dssp             HHHHHHHHCT---HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            4689999999   999999999999999999999999999887643

>PRK12370 invasion protein regulator; Provisional

Probab=96.87  E-value=0.0026  Score=54.07  Aligned_cols=55  Identities=9%  Similarity=-0.136  Sum_probs=38.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +.++-++|++...|..+|.++...|   +++.|..+|.+|++++|++..++|.+-.+.
T Consensus       328 ~~Al~ldP~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  382 (553)
T PRK12370        328 IKATELDHNNPQALGLLGLINTIHS---EYIVGSLLFKQANLLSPISADIKYYYGWNL  382 (553)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4456667777777777777777666   677777777777777777777666554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.76  E-value=0.0039  Score=50.63  Aligned_cols=60  Identities=8%  Similarity=-0.068  Sum_probs=55.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +.++-++|.++..|.++|.+++.+|   +++.|+.+|.++++++|++.++..-+..|-.+|..
T Consensus        60 ~~Al~l~P~~~~a~~~lg~~~~~lg---~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         60 NKAIELDPSLAKAYLRKGTACMKLE---EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999   99999999999999999999999988888888864

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.72  E-value=0.004  Score=48.90  Aligned_cols=50  Identities=14%  Similarity=0.076  Sum_probs=24.1

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      ++-.+|.++..+..+|.++...|   +++.|...|.++++++|++.-+++++-
T Consensus        90 Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         90 ALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34444555555555554444444   444555555555555554444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.69  E-value=0.0052  Score=42.97  Aligned_cols=54  Identities=22%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-..|.+...+..+|.+++..|   ++..|+++|.+++++.|++..+++.+-.+
T Consensus        55 ~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        55 DKALEHDPDDYLAYLALALYYQQLG---ELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4566678888888888888888888   88888888888888888877776665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.63  E-value=0.03  Score=40.21  Aligned_cols=59  Identities=24%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             ccchhcCCC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPH---NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~---n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.   ....+..+|.+++..|   +++.|+++|.+++++.|++.++++.+-.+...+.
T Consensus        59 ~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  120 (172)
T PRK02603         59 EEALKLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALELNPKQPSALNNIAVIYHKRG  120 (172)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            344544454   2468888999999988   8899999999999999999998887766555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.62  E-value=0.018  Score=42.85  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212         17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus        17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      .||-.+|..|   +++.|.+.|...+.++|.+.|.||||-+|+....
T Consensus        40 ~~A~~ly~~G---~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g   83 (157)
T PRK15363         40 RYAMQLMEVK---EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK   83 (157)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence            4455555555   5555666665555555666666666655555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.60  E-value=0.0048  Score=52.66  Aligned_cols=55  Identities=15%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+++|-++++++|++..+++.+-.+.
T Consensus       389 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       389 DKALKLNSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            4556667777777777777777776   677777777777777777776666554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0041  Score=50.32  Aligned_cols=56  Identities=29%  Similarity=0.248  Sum_probs=48.8

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ..+-+.|.|+-+..-|||++|-++|...-..++..|-+++.++|+|+|++|=|-+.
T Consensus       181 ~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~  236 (287)
T COG4235         181 NALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA  236 (287)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            45667899999999999999999888888999999999999999999999855443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.33  E-value=0.0081  Score=29.11  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      ..+.++|.+++.+|   +++.|..+|.++++++|++
T Consensus         2 ~~~~~~a~~~~~~~---~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLG---DYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCCC
Confidence            35678899999998   9999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.29  E-value=0.013  Score=43.73  Aligned_cols=58  Identities=16%  Similarity=0.015  Sum_probs=52.6

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +...+|.|+.|+--||-++=.+|   +++.|+.-|.+|+.|+|++.|+.+=+-.|--.+.+
T Consensus        61 L~~~Dp~~~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         61 LTIYDAWSFDYWFRLGECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHhCcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            45789999999999999999999   99999999999999999999999988888765554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.27  E-value=0.0037  Score=34.76  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAI   35 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~   35 (111)
                      |+.+|-++|+|+..+..||.+++-.|   +++.|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g---~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG---DYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc---CHHhhc
Confidence            35678889999999999999999888   777775

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.18  E-value=0.0086  Score=34.94  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ++++-..|.++..+..+|.++...|   +.+.|+++|.++++++|+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          58 EKALELDPDNAKAYYNLGLAYYKLG---KYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHhCCCcchhHHHHHHHHHHHHH---hHHHHHHHHHHHHccCCC
Confidence            4567788999999999999999998   899999999999999874

>PRK12370 invasion protein regulator; Provisional

Probab=96.17  E-value=0.011  Score=50.22  Aligned_cols=50  Identities=18%  Similarity=0.192  Sum_probs=45.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY   53 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly   53 (111)
                      +++++-++|+++..|..+|.++..+|   +.+.|..+|.++++++|++..+.+
T Consensus       361 ~~~Al~l~P~~~~a~~~lg~~l~~~G---~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        361 FKQANLLSPISADIKYYYGWNLFMAG---QLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCChhhHH
Confidence            46788899999999999999999999   899999999999999999876543

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.09  E-value=0.015  Score=45.64  Aligned_cols=50  Identities=22%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch-HHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI-RALYG   54 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l-RalyG   54 (111)
                      +.++-++|.+...+..+|.++|-.|   +++.|.+.|.++++++|++. |++|.
T Consensus       122 ~~Al~l~P~~~~a~~~lg~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189        122 DSVLELDPTYNYAYLNRGIALYYGG---RYELAQDDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4567899999999999999999998   99999999999999999875 65554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.93  E-value=0.015  Score=42.96  Aligned_cols=58  Identities=24%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             CccchhcCCCCH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHHH
Q psy14212          1 MEELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCHQ   61 (111)
Q Consensus         1 ~EEvlL~~P~n~---~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~~   61 (111)
                      +++++-.+|.++   ..+..+|.+++..|   +++.|+..|.++++..|++..   ++|.+-.|-.+
T Consensus        56 ~~~~~~~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302        56 FEALESRYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN  119 (235)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence            467888899876   46688999999998   999999999999999997776   67776666544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155|consensus

Probab=95.88  E-value=0.013  Score=50.68  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=40.2

Q ss_pred             hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      |-+||.--..|.-+|-=+--+   .|...|+.-|-+||++||.+-||||||=++-.-
T Consensus       357 LkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  357 LKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             HhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            445666555555554444333   388889999999999999999999999887653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.84  E-value=0.017  Score=53.15  Aligned_cols=55  Identities=16%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +++++-.+|.+...+..+|+++...|   +++.|+++|.++++++|++.+++.|+..+
T Consensus       374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l  428 (1157)
T PRK11447        374 YQQARQVDNTDSYAVLGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35778889999999999999999999   99999999999999999999999888765

>KOG1125|consensus

Probab=95.77  E-value=0.0075  Score=52.79  Aligned_cols=60  Identities=30%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |=+|...|+|..+--|||-++-   ..+.-++|+.-|-||++|.|+++|+.|-|-.+|-.|..
T Consensus       454 ~~AL~v~Pnd~~lWNRLGAtLA---N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~  513 (579)
T KOG1125|consen  454 EAALQVKPNDYLLWNRLGATLA---NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA  513 (579)
T ss_pred             HHHHhcCCchHHHHHHhhHHhc---CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence            3467889999999999998763   23467999999999999999999999999999977664

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.72  E-value=0.026  Score=48.20  Aligned_cols=52  Identities=10%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      ++++-++|.+...|..+|.+++-.|   +++.|..+|.+++++.|++..+++.+-
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg  474 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKKNFPEAPDVYNYYG  474 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            4566777777777777788877777   777777777777777777766665543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.62  E-value=0.0075  Score=46.16  Aligned_cols=58  Identities=17%  Similarity=0.101  Sum_probs=43.2

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCC--------cccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGG--------LENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg--------~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +||+|.++|..|--+--+|-.+++.|=        .+.++.|..||.+|++.+|+|-=-.=.|-|+
T Consensus        58 ~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   58 FEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            589999999999999999999999871        2479999999999999999875333334444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.60  E-value=0.053  Score=37.79  Aligned_cols=52  Identities=13%  Similarity=0.034  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |..+.....+|.+++..|   +++.|.++|.++++.+|++..+++.+-.+.....
T Consensus       132 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  183 (234)
T TIGR02521       132 PQPARSLENAGLCALKAG---DFDKAEKYLTRALQIDPQRPESLLELAELYYLRG  183 (234)
T ss_pred             ccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence            556667777899999888   8899999999999999988888887766655433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.53  E-value=0.42  Score=33.95  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             cchhcCCC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          3 ELFLHHPH---NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         3 EvlL~~P~---n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++-+.|.   ....|..+|-++...|   +.+.|+++|.+|+++.|++..++..+-.+-..+.
T Consensus        60 ~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         60 EAMRLEIDPYDRSYILYNIGLIHTSNG---EHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHhccccchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            34444454   2347888999999999   8899999999999999998887766655554333

>KOG1126|consensus

Probab=95.49  E-value=0.017  Score=51.09  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=26.3

Q ss_pred             cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212         28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus        28 ~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .|.++.|.++|-.||..+|.+-||||||=|+-.+
T Consensus       468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            3466777777777777777899999999888654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.27  E-value=0.069  Score=34.44  Aligned_cols=55  Identities=22%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHH
Q psy14212          2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~   59 (111)
                      ++++-..|.+   ...+..+|.+++..|   ++..|.++|..++.+.|++   ..+++.+-.+-
T Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795        26 QAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3455566765   346777899999888   8999999999999998875   45555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.09  E-value=0.054  Score=47.28  Aligned_cols=56  Identities=9%  Similarity=-0.143  Sum_probs=49.2

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++++-.+|.++-.|..+|.++...|   +++.|+..|.++++++|++..+++.+-.+.
T Consensus        99 l~~~l~~~P~~~~a~~~la~~l~~~g---~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l  154 (656)
T PRK15174         99 VNKLLAVNVCQPEDVLLVASVLLKSK---QYATVADLAEQAWLAFSGNSQIFALHLRTL  154 (656)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35678889999999999999999998   899999999999999999998888775553

>KOG0553|consensus

Probab=95.03  E-value=0.067  Score=43.73  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      .|-++|+-|-.+.|+|-.+|++|   +++.|...|.++|+|.|+|-=..=+|..+-.++-.
T Consensus       141 Al~iDp~yskay~RLG~A~~~~g---k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALG---KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccC---cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            46678888888888888888888   88888888999999999888555566666655554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.70  E-value=0.41  Score=36.74  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhhhhhhhHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGL-------ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK   74 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~-------enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k~~~~~~~   74 (111)
                      |+....+|+++-...|-|..+.-.+..       +-++.|+.=|..||.+||+.-+|+|=+=.+-..+...   . ....
T Consensus        15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l---~-~d~~   90 (186)
T PF06552_consen   15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL---T-PDTA   90 (186)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-------HH
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh---c-CChH
Confidence            566788999999888999888877522       3588899999999999999999998665554433321   1 1122


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcCC
Q psy14212         75 EISKQMMWVSKHLARQYEEQQGN   97 (111)
Q Consensus        75 e~~kL~~~A~~~L~~~Y~~~~~~   97 (111)
                      +...+-+.|++..++....+..+
T Consensus        91 ~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   91 EAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCc
Confidence            34567788888888887764444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.70  E-value=0.078  Score=44.33  Aligned_cols=54  Identities=28%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-..|.++..+.++|.+++..|   +.+.|.++|.++++.+|++..+++++..+
T Consensus       625 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  678 (899)
T TIGR02917       625 KKLLALQPDSALALLLLADAYAVMK---NYAKAITSLKRALELKPDNTEAQIGLAQL  678 (899)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3445566777777777777777777   77777777777777777777666665544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=94.62  E-value=0.027  Score=35.81  Aligned_cols=58  Identities=26%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             ccchhcCCC--CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~--n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |.++-..|.  +..+...+|.++|.+|   +++.|...+-+ .+.+|.+.+..|-+-.|.-++.
T Consensus        13 ~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen   13 EKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             HHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence            455666774  4556666899999999   99999999999 8899988888886655554433

>KOG1127|consensus

Probab=94.53  E-value=0.064  Score=50.13  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=50.5

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ||-.+|+|++.|.-+|--+...|+  +++.|..+|-.|.++.|+|+=||=||..--.+
T Consensus        28 vLk~dpdNYnA~vFLGvAl~sl~q--~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen   28 VLKEDPDNYNAQVFLGVALWSLGQ--DLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             HHhcCCCcchhhhHHHHHHHhccC--CHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            677899999999999999999986  59999999999999999999999998865544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.40  E-value=0.099  Score=48.26  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=49.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +++++-.+|.++..+..+|.+++-.|   +++.|++.|.+++++.|++..++|.+-+.
T Consensus       484 ~~~Al~~~P~~~~~~~~LA~~~~~~G---~~~~A~~~l~~al~~~P~~~~~~~a~al~  538 (1157)
T PRK11447        484 QRQRLALDPGSVWLTYRLAQDLRQAG---QRSQADALMRRLAQQKPNDPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            46788899999999999999999999   99999999999999999998888766543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.40  E-value=0.11  Score=46.08  Aligned_cols=58  Identities=26%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++++-..|.|.-.+..+|.++...|   +.+.|.+.|.+++++.|++...+++.-++.-.
T Consensus       382 l~~al~~~P~n~~l~~~lA~l~~~~g---~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        382 ARELAYNAPGNQGLRIDYASVLQARG---WPRAAENELKKAEVLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            35777889999999999999999888   88999999999999999999999888886543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.19  E-value=0.12  Score=43.29  Aligned_cols=55  Identities=35%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      ++++-.+|.+...+..+|.+++..|   +++.|.+.|.++++++|++.++++.+..+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  237 (899)
T TIGR02917       183 DEVLTADPGNVDALLLKGDLLLSLG---NIELALAAYRKAIALRPNNPAVLLALATIL  237 (899)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4556667888878888888888877   788888888888888888888777765554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.04  E-value=0.16  Score=38.76  Aligned_cols=46  Identities=24%  Similarity=0.311  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      |.++.+...+|+++.-.|   +...|++.|-++|+++|++..++.++.-
T Consensus       143 ~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~  188 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAW  188 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            688999999999999999   8999999999999999998877766543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=93.94  E-value=0.12  Score=47.77  Aligned_cols=57  Identities=14%  Similarity=0.084  Sum_probs=40.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++++-++|.++.+|..+|-++.-.|   +++.|+.+|.++++++|++.-++|.+-++-..
T Consensus       633 ~~AL~l~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        633 RAALELEPNNSNYQAALGYALWDSG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4556667777777777777777666   67777777777777777777777766666544

>KOG1173|consensus

Probab=93.90  E-value=0.15  Score=45.06  Aligned_cols=53  Identities=30%  Similarity=0.412  Sum_probs=47.4

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHHHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSC   59 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~l~~   59 (111)
                      +|+..|++|.+|.-+|=|+--.|   |+..|.-||-.|+-+.|+|  .+.+-|..+=.
T Consensus       481 aL~l~~k~~~~~asig~iy~llg---nld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  481 ALLLSPKDASTHASIGYIYHLLG---NLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHcCCCchhHHHHHHHHHHHhc---ChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            68899999999999999999999   9999999999999999988  57777755444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=93.86  E-value=0.16  Score=44.34  Aligned_cols=52  Identities=17%  Similarity=0.188  Sum_probs=23.8

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLE-NIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~e-nl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      ++-..|.+...+..+|.+++..|-.+ ....|..+|.++++++|++.++++.+
T Consensus       238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l  290 (656)
T PRK15174        238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLY  290 (656)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            33444555555555555555555111 01124555555555555554444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.84  E-value=0.39  Score=37.17  Aligned_cols=53  Identities=21%  Similarity=0.145  Sum_probs=43.2

Q ss_pred             CccchhcCCCCHHHH---HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          1 MEELFLHHPHNHLLH---QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h---~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      +|+++-..|.++...   ..+|.++|-.|   ++..|+.+|.+.|++.|++..+=|-++
T Consensus        55 f~~l~~~yP~s~~a~~a~l~la~ayy~~~---~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         55 LEALDNRYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            467788889888777   78899999888   999999999999999997654443333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.84  E-value=0.14  Score=41.74  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH-HHHhHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-ALYGLAL   57 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR-alyGL~l   57 (111)
                      |..+-..|+|+.++.-+|.+++-.|   ++..|++||.+++++.|++.- .+++..+
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~al~~~P~~~~~~~La~~~  371 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHG---EWQEASLAFRAALKQRPDAYDYAWLADAL  371 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4566778999999999999999998   899999999999999998765 4444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.81  E-value=0.1  Score=28.73  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      +..+|.++..+|   +++.|+.+|-+++++..
T Consensus         2 l~~Lg~~~~~~g---~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    2 LNNLGRIYRQQG---DYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhcc
Confidence            467999999999   99999999999776654

>KOG0553|consensus

Probab=93.77  E-value=0.07  Score=43.63  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      |.++|.++|.|..||.-=|-+|-..|   .++.|+|=-..||.++|.+.|||==|=++-
T Consensus       104 Y~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen  104 YTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            46889999999999999999999999   899999999999999999999986444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=93.62  E-value=0.17  Score=30.79  Aligned_cols=42  Identities=19%  Similarity=0.110  Sum_probs=34.0

Q ss_pred             HHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212         19 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus        19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++...+   +++.|++++.++++++|++.++++..-.|-.+..
T Consensus         2 ~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g   43 (73)
T PF13371_consen    2 KQIYLQQE---DYEEALEVLERALELDPDDPELWLQRARCLFQLG   43 (73)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc
Confidence            56677666   9999999999999999999999877666655333

>KOG2076|consensus

Probab=93.59  E-value=0.88  Score=41.99  Aligned_cols=31  Identities=29%  Similarity=0.255  Sum_probs=25.1

Q ss_pred             cHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212         30 NIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus        30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      |+..|+-+|.+||.++|.|.+-.|-=..-+.
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            8999999999999999988776665444444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=93.53  E-value=0.21  Score=29.89  Aligned_cols=34  Identities=24%  Similarity=0.050  Sum_probs=30.9

Q ss_pred             cHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212         30 NIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus        30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++..|.++|.++++.+|+|..+++++..|.-+..
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g   39 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG   39 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            8999999999999999999999999988876544

...

>KOG4626|consensus

Probab=93.43  E-value=0.16  Score=45.90  Aligned_cols=53  Identities=30%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      +-.+...|++...|--+|-|||-+|   .+++|+..|-|+|++.|+..-|+--|--
T Consensus       276 ~rAl~lrpn~A~a~gNla~iYyeqG---~ldlAI~~Ykral~~~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  276 LRALNLRPNHAVAHGNLACIYYEQG---LLDLAIDTYKRALELQPNFPDAYNNLAN  328 (966)
T ss_pred             HHHHhcCCcchhhccceEEEEeccc---cHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence            4567889999999999999999999   8999999999999999987777655543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.31  E-value=0.65  Score=36.64  Aligned_cols=54  Identities=11%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHH
Q psy14212          2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~   58 (111)
                      +.++-..|.+   ++.|-.+|+++|..|   ++..|+.+|..+++.-|++   .-|+|-+-.+
T Consensus       167 ~~fl~~yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~  226 (263)
T PRK10803        167 QNFVKKYPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPKAADAMFKVGVI  226 (263)
T ss_pred             HHHHHHCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence            4556677887   579999999999999   9999999999999998864   4555544333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.26  E-value=0.16  Score=32.63  Aligned_cols=47  Identities=15%  Similarity=0.010  Sum_probs=38.9

Q ss_pred             ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212          2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA   51 (111)
Q Consensus         2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa   51 (111)
                      ++++-..|.+   +..+..+|.+++-.|   +...|.++|.++++..|++..+
T Consensus        63 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        63 LAVVKKYPKSPKAPDALLKLGMSLQELG---DKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHCCCCCcccHHHHHHHHHHHHhC---ChHHHHHHHHHHHHHCcCChhH
Confidence            4566667775   567899999999888   8999999999999999987653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.95  E-value=0.26  Score=38.20  Aligned_cols=42  Identities=14%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ++++-.+|.+...|..+|.++|-.|   +++.|+.+|.+++++.|
T Consensus       138 ~~al~~~p~~~~~~~~la~i~~~~g---~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         138 RRALELNPDDAWAVHAVAHVLEMQG---RFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHhhhhccC
Confidence            4566677888777777888888777   77888888888888776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.93  E-value=0.08  Score=29.24  Aligned_cols=23  Identities=39%  Similarity=0.340  Sum_probs=19.7

Q ss_pred             HHHHhccCCCchHHHHhHHHHHH
Q psy14212         38 YLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus        38 f~~aleL~~~~lRalyGL~l~~~   60 (111)
                      |.+||+++|+|..+++-|-.+-.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~   24 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYL   24 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHH
Confidence            78999999999999998776544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.77  E-value=0.4  Score=41.16  Aligned_cols=53  Identities=17%  Similarity=0.166  Sum_probs=44.9

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCHQV   62 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~~l   62 (111)
                      .+|.+.-.|.-+|-+++..|   +++.|...|.+||+++|++.=   ++|-+-.|-.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L  125 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKG---RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR  125 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence            58999999999999999999   999999999999999999873   366665555443

>KOG1173|consensus

Probab=92.76  E-value=0.13  Score=45.44  Aligned_cols=49  Identities=16%  Similarity=0.024  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      -|+.++-.--.|=-+|++|   +.+.||+||+.|.-++|.+-+||-|+-.+-
T Consensus       308 yP~~a~sW~aVg~YYl~i~---k~seARry~SKat~lD~~fgpaWl~fghsf  356 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIG---KYSEARRYFSKATTLDPTFGPAWLAFGHSF  356 (611)
T ss_pred             CCCCCcchhhHHHHHHHhc---CcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence            4555555555666666666   899999999999999999999999886543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.55  E-value=0.26  Score=25.41  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ..++|.+++-.|   +.+.|+++|.+.++..|+
T Consensus         3 ~~~~a~~~~~~g---~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLG---DYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHC---HHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcc---CHHHHHHHHHHHHHHCcC
Confidence            357899999988   999999999999998886

>TIGR00540 hemY_coli hemY protein

Probab=91.79  E-value=0.28  Score=40.04  Aligned_cols=46  Identities=11%  Similarity=0.082  Sum_probs=40.5

Q ss_pred             ccchhcCCCCH--HHHHHHHHHHHhcCCcccHHHHHHHHH--HHhccCCCchH
Q psy14212          2 EELFLHHPHNH--LLHQRYADILYTQGGLENIELAISHYL--MAINLNEKNIR   50 (111)
Q Consensus         2 EEvlL~~P~n~--~~h~rlAEi~Yt~Gg~enl~~A~kyf~--~aleL~~~~lR   50 (111)
                      |..+-..|.|+  .++.-||-++|-.|   ++..|++||.  ++++..|++.-
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~---~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHG---EFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcc---cHHHHHHHHHHhHHhhcCCCHHH
Confidence            44567889999  99999999999998   9999999999  79999998765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174|consensus

Probab=91.71  E-value=0.36  Score=41.84  Aligned_cols=53  Identities=28%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      |.+-.+-+.|..+|++.-...   -+..|..||..|+.++|++-|++=|+-.--++
T Consensus       465 L~~~~D~~LH~~Lgd~~~A~N---e~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  465 LIIFPDVNLHNHLGDIMRAQN---EPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HhhccccHHHHHHHHHHHHhh---hHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            344457789999999998776   78899999999999999999999999766543

>PLN02789 farnesyltranstransferase

Probab=91.35  E-value=0.47  Score=38.39  Aligned_cols=57  Identities=12%  Similarity=0.011  Sum_probs=43.5

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      .+|-.+|.|+..+.--+-++...|   +++.|+.+|.++|+.+|+|-.||+-...+..++
T Consensus       133 kal~~dpkNy~AW~~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        133 KILSLDAKNYHAWSHRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            566677777777777777777777   688899999999999998888887776665443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=91.16  E-value=2.2  Score=33.39  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      ++..+|.+++-.|   +++.|.++|.++++++|++.++++-+-.
T Consensus       182 ~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~  222 (389)
T PRK11788        182 FYCELAQQALARG---DLDAARALLKKALAADPQCVRASILLGD  222 (389)
T ss_pred             HHHHHHHHHHhCC---CHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence            4556677777666   7777888888888877777776655433

>KOG1155|consensus

Probab=90.76  E-value=1.4  Score=38.51  Aligned_cols=60  Identities=22%  Similarity=0.177  Sum_probs=52.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      +.+-+-|+++.+-+.+||++=..+   +++.|+|-|-+|+.+++.+--|+|-|--.-.++...
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL  482 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence            456678999999999999997777   999999999999999999999999887777766654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=90.54  E-value=0.62  Score=39.12  Aligned_cols=59  Identities=24%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      .+.|..+|+++..-.-.|+.+...|   +.+.|.+..-+|+++.|+..++||.|..|--++.
T Consensus       224 ~~aL~~~p~d~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  224 NEALKENPQDSELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence            4667788999888888888888887   7899999999999999999999999998876543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=90.41  E-value=0.49  Score=29.18  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLN   45 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~   45 (111)
                      ...+..+|.+++.+|   +++.|.++|-+|+++.
T Consensus        46 a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   46 ANTLNNLGECYYRLG---DYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence            346778899999999   9999999999999874

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=90.39  E-value=0.72  Score=42.80  Aligned_cols=54  Identities=19%  Similarity=0.112  Sum_probs=41.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      ++++-++|+ ...|..+|.++.-.|   +.+.|...|.++++++|++..+++-+-.+.
T Consensus       600 ~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        600 TRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             HHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            566778886 777888888888888   888888888889998888887666554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=90.39  E-value=0.82  Score=32.68  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSCHQV   62 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~~~l   62 (111)
                      |.....+..+|.+++..|   +++.|..+|.+++++.|+.   .-+++.+-.+..++
T Consensus        32 ~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~   85 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADG---EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN   85 (172)
T ss_pred             hhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc
Confidence            366777888899998888   9999999999999988753   45677666666543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=90.35  E-value=0.61  Score=41.39  Aligned_cols=53  Identities=9%  Similarity=-0.030  Sum_probs=43.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-..|.+.. +..+|-++..+|   +.+.|.+.|.+++++.|++..+++.+..+
T Consensus       107 ~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049        107 KQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             HHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            566778899988 888899888888   88999999999999999988877765443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.23  E-value=1.1  Score=34.77  Aligned_cols=51  Identities=22%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      -..|..+..+.-+|.++.-+|   +++.|...|.++++++|++.-++..+-.+.
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~p~~~~~~~~la~i~  158 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAG---QYDRAEEAARRALELNPDDAWAVHAVAHVL  158 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            356888888889999999999   899999999999999999977766664444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=89.82  E-value=0.73  Score=37.31  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=44.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++|.++|.++-...--+.++...|  ++++.++..+.++++.+|+|.-+|+--..+..+
T Consensus        61 ~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~  118 (320)
T PLN02789         61 ADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence            4678889988877777788888775  367889999999999999888777755444433

>PRK15331 chaperone protein SicA; Provisional

Probab=89.55  E-value=2  Score=32.26  Aligned_cols=55  Identities=13%  Similarity=0.052  Sum_probs=31.0

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.+|.|+-|..-||-++=..+   +++.|.--|+.|.-+.+++.|..|=.-.|--.+.
T Consensus        65 ~~d~~n~~Y~~GLaa~~Q~~k---~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         65 IYDFYNPDYTMGLAAVCQLKK---QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HhCcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            345555555555555555555   5566666666666665555555555555544433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=89.35  E-value=0.54  Score=40.51  Aligned_cols=39  Identities=15%  Similarity=-0.016  Sum_probs=33.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      ..|.++..|.-+|-+....|   +.+.|..+|.+|++|+|+.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g---~~~~A~~~l~rAl~L~ps~  453 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKG---KTDEAYQAINKAIDLEMSW  453 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCH
Confidence            47788888999998888887   8999999999999999964

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.02  E-value=2.9  Score=25.59  Aligned_cols=31  Identities=16%  Similarity=0.215  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLN   45 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~   45 (111)
                      ...+..+|.+++-.|   +++.|+.+|.+|+++.
T Consensus         5 a~~~~~la~~~~~~~---~~~~A~~~~~~al~~~   35 (78)
T PF13424_consen    5 ANAYNNLARVYRELG---RYDEALDYYEKALDIE   35 (78)
T ss_dssp             HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence            456778899999888   9999999999999884

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=88.78  E-value=1.2  Score=32.70  Aligned_cols=59  Identities=17%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             ccchhcCCCCHHHH-----------------HHHHHHHHhcCCcccHHHHHHHHHHHhccCCC---chHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAINLNEK---NIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h-----------------~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~---~lRalyGL~l~~~~   61 (111)
                      ++++-..|.+...+                 ..+|++++..|   +...|+.+|..+++.+|+   ..+|+|.+..+-.+
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG---AYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            45666778776543                 35688888888   999999999999999875   46888887776654


Q ss_pred             HH
Q psy14212         62 VL   63 (111)
Q Consensus        62 l~   63 (111)
                      +.
T Consensus       216 lg  217 (235)
T TIGR03302       216 LG  217 (235)
T ss_pred             cC
Confidence            43

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=88.13  E-value=0.8  Score=35.87  Aligned_cols=45  Identities=13%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI   49 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l   49 (111)
                      ++++-..|.+...+..+|+++.-.|   +++.|.++|.++++.+|++.
T Consensus       204 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        204 KKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             HHHHhHCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHChhhH
Confidence            4556678888888888999998888   89999999999999988764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=87.94  E-value=0.24  Score=37.81  Aligned_cols=48  Identities=23%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      .|.|+-++..||.+++..|   +.+.|+.+|.++++.+|++...+.-+--+
T Consensus       210 ~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  210 APDDPDLWDALAAAYLQLG---RYEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             -HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcccc---ccccccccccccccccccccccccccccc
Confidence            4788888899999999999   89999999999999999888766654443

>KOG4626|consensus

Probab=87.86  E-value=2.2  Score=38.96  Aligned_cols=59  Identities=25%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +-.|.++|.=.--|.-+|-++=-.|   |++.|+.-|..+++|.||..-|.--+..|-.-+.
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~kDsG---ni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIYKDSG---NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHhhccC---CcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence            4568889988888999999988888   9999999999999999999999888888776444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.33  E-value=4.3  Score=31.30  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhh
Q psy14212         29 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK   67 (111)
Q Consensus        29 enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k   67 (111)
                      ++...+.++|..+++++|++.++|+.+-.....+....+
T Consensus       272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence            588999999999999999999999999999999887543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.41  E-value=1  Score=24.06  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ...+|.+++.+|   +++.|.++|-+++++..
T Consensus         5 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    5 LNNLANAYRAQG---RYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHCT----HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhh---hcchhhHHHHHHHHHHH
Confidence            456899999998   99999999999998753

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.13  E-value=1.4  Score=25.35  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      .|.++|||-...+   |++.|..-|-.++++..
T Consensus         3 v~~~Lgeisle~e---~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    3 VYDLLGEISLENE---NFEQAIEDYEKALEIQE   32 (38)
T ss_pred             HHHHHHHHHHHhc---cHHHHHHHHHHHHHHHH
Confidence            5889999999887   99999999999998753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=86.03  E-value=1.4  Score=37.99  Aligned_cols=50  Identities=14%  Similarity=-0.005  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      |.+|-.+.| |.-++-.+..+++..|+..|.+||++.|++.+|+=|+.+|-
T Consensus       337 ~~Ay~~~lr-g~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~  386 (517)
T PRK10153        337 GAALTLFYQ-AHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALAD  386 (517)
T ss_pred             HHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            344555555 44444456677899999999999999999999998886655

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=86.00  E-value=1.4  Score=31.48  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      -+..+||.+-+.|   +++.|..||..||..||+
T Consensus        65 ~qV~lGE~L~~~G---~~~~aa~hf~nAl~V~~q   95 (121)
T PF02064_consen   65 QQVQLGEQLLAQG---DYEEAAEHFYNALKVCPQ   95 (121)
T ss_dssp             HHHHHHHHHHHTT----HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCC
Confidence            4678999999988   899999999999999995

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG1126|consensus

Probab=85.78  E-value=0.78  Score=40.95  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      |||--+.|.+...|.-+|-|+=.+|   +...|+++|.-|.+|.|
T Consensus       581 EeLk~~vP~es~v~~llgki~k~~~---~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  581 EELKELVPQESSVFALLGKIYKRLG---NTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHhCcchHHHHHHHHHHHHHHc---cchHHHHhhHHHhcCCC
Confidence            4555555555555555555555555   44555555555555555

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=85.46  E-value=18  Score=29.43  Aligned_cols=57  Identities=9%  Similarity=-0.063  Sum_probs=43.8

Q ss_pred             ccchhcCCCCHHHH-HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h-~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++.-.+|.+.... .+.|+++...|   +.+.|.+++.+.++..|++..++.=+..+--+
T Consensus       142 ~~A~~~~~~~~~~~~l~~a~l~l~~g---~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        142 ERAAELADNDQLPVEITRVRIQLARN---ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            44555678876544 45599999888   89999999999999999998887766655443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=85.41  E-value=1.4  Score=40.25  Aligned_cols=52  Identities=10%  Similarity=0.085  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHH--HHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          8 HPHNHLLHQRY--ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         8 ~P~n~~~h~rl--AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      .|.|..++..+  |.++--+|   ++..|+..|.+++++.|+|.-+++|+.+.....
T Consensus        96 ~p~n~~~~~llalA~ly~~~g---dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~  149 (822)
T PRK14574         96 SSMNISSRGLASAARAYRNEK---RWDQALALWQSSLKKDPTNPDLISGMIMTQADA  149 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence            67777788888  55888778   889999999999999999999999987765544

>KOG0624|consensus

Probab=84.92  E-value=6.5  Score=33.75  Aligned_cols=55  Identities=31%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      |||-+.|.|......=||.+.   |.|.+..|+.-|..|.|+|++|-|+==|+--+-+
T Consensus       332 evL~~d~~dv~~l~dRAeA~l---~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr  386 (504)
T KOG0624|consen  332 EVLDIDPDDVQVLCDRAEAYL---GDEMYDDAIHDYEKALELNESNTRAREGLERAKR  386 (504)
T ss_pred             HHHhcCchHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            789999998888888899887   6789999999999999999999999999876644

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=84.13  E-value=4.3  Score=32.62  Aligned_cols=56  Identities=20%  Similarity=0.082  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      -.|.+.-.+.-+|-.+.-.|   |+..|..+|-++..+.|++-|+|=|+-.+..++-+.
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~  150 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF  150 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence            34555555555666667667   899999999999999999999999998888877654

>PRK15331 chaperone protein SicA; Provisional

Probab=84.09  E-value=4.2  Score=30.57  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212         17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus        17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      ++|=-.|.+|   ++..|.+.|..-.-+++.|.|=|.||-.|+..+.+-
T Consensus        42 ~~Ay~~y~~G---k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y   87 (165)
T PRK15331         42 AHAYEFYNQG---RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF   87 (165)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH
Confidence            4566778888   999999999999999999999999999999866544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=83.58  E-value=13  Score=27.28  Aligned_cols=49  Identities=29%  Similarity=0.241  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCH   60 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~   60 (111)
                      |.....-..+|+.+|-.|   +++.|+.-|-+=|+|+|++..   |+|-.-|+.-
T Consensus        44 ~ya~qAqL~l~yayy~~~---~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   44 EYAEQAQLDLAYAYYKQG---DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             cccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            455566788999999998   999999999999999996543   3444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=83.08  E-value=3.6  Score=36.89  Aligned_cols=53  Identities=11%  Similarity=0.037  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      -|++.-.|..+|++.-..|   .++.|...+.++++++|++.=|...+..+..+.-
T Consensus        82 ~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~  134 (694)
T PRK15179         82 YPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ  134 (694)
T ss_pred             ccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Confidence            4778888889999999888   8888999999999999988877666666655433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=82.88  E-value=2.1  Score=29.74  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAI   42 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~al   42 (111)
                      .|..+.++...|+|+...|   +.+.|++.|.+||
T Consensus       114 ~~~~~~~~~~~Gdi~~~~g---~~~~A~~~y~~Al  145 (145)
T PF09976_consen  114 EAFKALAAELLGDIYLAQG---DYDEARAAYQKAL  145 (145)
T ss_pred             cchHHHHHHHHHHHHHHCC---CHHHHHHHHHHhC
Confidence            4555667777788888777   7788888887764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=82.05  E-value=2.7  Score=27.97  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      |..+-.+|.|+-....+|+.+...|   +++.|...+...|+-++++
T Consensus        12 ~~~~a~~P~D~~ar~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   12 EAALAANPDDLDARYALADALLAAG---DYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccc
Confidence            4456679999999999999999888   9999999999999998865

>PRK11906 transcriptional regulator; Provisional

Probab=81.85  E-value=3.4  Score=35.64  Aligned_cols=47  Identities=9%  Similarity=-0.088  Sum_probs=40.7

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY   53 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly   53 (111)
                      ++-++|.|+..|..+|-+.--.|   .+..|.--|.||++|||+..=++|
T Consensus       330 Aveld~~Da~a~~~~g~~~~~~~---~~~~a~~~f~rA~~L~Pn~A~~~~  376 (458)
T PRK11906        330 VSDITTVDGKILAIMGLITGLSG---QAKVSHILFEQAKIHSTDIASLYY  376 (458)
T ss_pred             HHhcCCCCHHHHHHHHHHHHhhc---chhhHHHHHHHHhhcCCccHHHHH
Confidence            45689999999999999988888   489999999999999998776655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=81.83  E-value=2.6  Score=34.32  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      |..|-.||+|.-=-..||+++-..|   ++..|..-|.+|++|.|+|.=-+=|+
T Consensus       146 e~~L~~nP~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~g~n~~~~~g~  196 (287)
T COG4235         146 ETHLQQNPGDAEGWDLLGRAYMALG---RASDALLAYRNALRLAGDNPEILLGL  196 (287)
T ss_pred             HHHHHhCCCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556789999999999999999999   99999999999999999887555444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=81.77  E-value=4.1  Score=37.26  Aligned_cols=61  Identities=16%  Similarity=0.090  Sum_probs=55.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +|+++-..|.|.-+-..+|+|+=..|   +...|...|-.+..+.|++.++.+|...+.-.+-+
T Consensus       439 le~l~~~aP~n~~l~~~~A~v~~~Rg---~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e  499 (822)
T PRK14574        439 LEDLSSTAPANQNLRIALASIYLARD---LPRKAEQELKAVESLAPRSLILERAQAETAMALQE  499 (822)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence            47888999999999999999999999   99999999999999999999999999888876643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=81.32  E-value=3.1  Score=29.42  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=35.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcC-------C----cccHHHHHHHHHHHhccCCCc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQG-------G----LENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~G-------g----~enl~~A~kyf~~aleL~~~~   48 (111)
                      +.++-++|.+...|..+|-+++-.|       .    ..++..|..+|.+++.+.|++
T Consensus        96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            4566778999999999999999444       2    124667888888888888853

>PRK11906 transcriptional regulator; Provisional

Probab=80.84  E-value=2.4  Score=36.61  Aligned_cols=45  Identities=18%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI   49 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l   49 (111)
                      |=.+.++|+....+.-.|-+....|   +.+.|+.+..+|++|+|.-.
T Consensus       362 ~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        362 EQAKIHSTDIASLYYYRALVHFHNE---KIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCchhh
Confidence            3457899999999999999999999   89999999999999999543

>KOG0543|consensus

Probab=80.77  E-value=6.5  Score=33.43  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=38.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      +.||-+.|+|.--.-|=|.++-++|   .++.||.-|-+++++.|+|
T Consensus       281 ~kvLe~~~~N~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  281 NKVLELDPNNVKALYRRGQALLALG---EYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCc
Confidence            3578888888887778899999998   8999999999999999988

>smart00671 SEL1 Sel1-like repeats

Probab=80.17  E-value=4.6  Score=21.02  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhc-CCcccHHHHHHHHHHHhccC
Q psy14212         15 HQRYADILYTQ-GGLENIELAISHYLMAINLN   45 (111)
Q Consensus        15 h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~   45 (111)
                      ...+|.+++.- |...|...|.++|.+|.+..
T Consensus         4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence            34677776654 44679999999999998764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.18
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.03
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.98
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.98
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.91
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.8
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.79
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.7
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.38
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.37
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.27
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.25
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.23
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.22
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.15
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.14
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.04
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.02
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.0
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.99
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.86
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.84
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.78
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.74
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.72
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.72
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.59
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.41
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.32
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.55
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.53
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.24
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.02
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.02
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.57
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	93.98
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	93.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	93.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	93.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	93.19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	93.01
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	92.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	92.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	91.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	90.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	90.84
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	90.62
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	90.53
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	90.45
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	90.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	90.05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	89.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	88.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	88.42
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	87.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	87.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	87.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	86.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	86.6
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	86.37
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	85.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	85.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	85.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	85.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	84.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	83.38
1klx_A	138	Cysteine rich protein B; structural genomics, heli	82.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	82.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	82.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	82.48
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	82.32
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	81.67
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	81.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	81.02
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	80.83
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	80.76

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.19  E-value=2.3e-06  Score=56.95  Aligned_cols=62  Identities=19%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      |+++|-++|.++..|..+|.+++-+|   +++.|+.+|.++|+++|++..+++.+-.|-..+.+.
T Consensus        36 ~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   97 (126)
T 4gco_A           36 YNEAVKRDPENAILYSNRAACLTKLM---EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW   97 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH
Confidence            35788899999999999999999999   999999999999999999999999998888776543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.18  E-value=2.6e-06  Score=56.68  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      +.-++|...-.|...|.++|-.|   +++.|+++|.++|+++|++..+++.+-.|-.++.+.
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~   63 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF   63 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH
Confidence            34578999999999999999999   999999999999999999999999998888776644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.18  E-value=2.2e-06  Score=59.85  Aligned_cols=55  Identities=15%  Similarity=0.079  Sum_probs=30.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      .++-.+|.++.++..+|.+++..|   +++.|+.+|.++++++|++..++|.+-.|-.
T Consensus        61 ~al~~~P~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           61 FLCIYDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            344455555555555555555555   5555555555555555555555555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.18  E-value=3.2e-06  Score=57.40  Aligned_cols=56  Identities=13%  Similarity=0.076  Sum_probs=34.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +++|-++|+++..|..+|.+++..|   +++.|+.+|.++++++|++..+++.+-.+..
T Consensus        55 ~~al~~~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           55 CTYINVQERDPKAHRFLGLLYELEE---NTDKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455566666666666666666666   6666666666666666666666665554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.13  E-value=4.3e-06  Score=53.78  Aligned_cols=60  Identities=20%  Similarity=0.077  Sum_probs=53.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+|.++..+..+|.+++..|   +++.|+.+|.++++++|++..+++.+-.+...+.
T Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A           27 YTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence            35678889999999999999999999   9999999999999999999999999888765443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.11  E-value=1.2e-05  Score=53.41  Aligned_cols=56  Identities=13%  Similarity=0.046  Sum_probs=35.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ++++-.+|.++.++..+|.+++..|   +++.|+++|.++++++|++..++|.+-.|..
T Consensus        42 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           42 QALCMLDHYDARYFLGLGACRQSLG---LYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            3455566666666666666666666   6666666666666666666666666555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.11  E-value=6.8e-06  Score=54.14  Aligned_cols=59  Identities=20%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.++-.+|.++..+..+|.++...|   +++.|+.+|.++++++|++..+++.+-.+-.+..
T Consensus        41 ~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           41 EAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            5677788999999999999999888   8899999999999999999999888877765443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.10  E-value=9.8e-06  Score=50.08  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc------hHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~------lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.++..+..+|.+++.+|   +++.|+++|.++++++|++      ..++|.+-.+...+
T Consensus        28 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~   91 (111)
T 2l6j_A           28 DQLITAQPQNPVGYSNKAMALIKLG---EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV   91 (111)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777777777766   6677777777777777766      56666555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.05  E-value=1.2e-05  Score=48.14  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |.+...+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....
T Consensus         6 ~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~   57 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   57 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            345667777888888777   7888888888888888888888777766665443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.03  E-value=1.3e-05  Score=51.02  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.....
T Consensus         8 ~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            8 LEAMLAQGTDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            35678889999999999999999999   9999999999999999999999998877765443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.98  E-value=1.1e-05  Score=54.37  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++++-++|.++.++..+|.+++..|   +++.|+.+|.++++++|++..++|.+-.+...+.+
T Consensus        34 ~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           34 YTQALSIAPANPIYLSNRAAAYSASG---QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD   94 (164)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence            35678889999999999999999999   99999999999999999999999998888765543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=1.1e-05  Score=52.47  Aligned_cols=53  Identities=17%  Similarity=-0.028  Sum_probs=46.8

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      .+|.|+-.+..+|+++|..+|....+.|+++|.++++++|+++||++.+-...
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~   53 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDH   53 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHH
Confidence            37999999999999999888766689999999999999999999999885443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.96  E-value=1.2e-05  Score=54.66  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=35.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +++-.+|.++.++..+|.+++..|   +++.|+++|.++++++|++.+++|.+-.|..
T Consensus        46 ~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           46 ALCVLDHYDSRFFLGLGACRQAMG---QYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHcCcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445566666666666666666666   6666666666666666666666666555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.95  E-value=1.1e-05  Score=56.24  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++++-++|.++..+..+|.+++-.|   +++.|.++|.++++++|++..+|+++-.|...+.+
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~   85 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ   85 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence            46789999999999999999999999   99999999999999999999999999888876543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.95  E-value=1.5e-05  Score=51.11  Aligned_cols=58  Identities=14%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++.++++.+-.+...+
T Consensus        33 ~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           33 GRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhhCcCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            4566778888888888888888887   788888888888888888888888877766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.93  E-value=2.4e-05  Score=49.58  Aligned_cols=54  Identities=11%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      .+|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.|...+.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g   55 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD---NASRALALFEELVETDPDYVGTYYHLGKLYERLD   55 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred             CCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            47999999999999999999   9999999999999999999999999887765443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.91  E-value=1.4e-05  Score=56.60  Aligned_cols=56  Identities=21%  Similarity=0.206  Sum_probs=51.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++++-.+|.++..+..+|.+++..|   +++.|+.+|.++++++|++..+++.+-.+-
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            35678899999999999999999999   999999999999999999999999887664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.84  E-value=1.7e-05  Score=48.84  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=42.3

Q ss_pred             ccchhcCCCCHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212          2 EELFLHHPHNHL-LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY   53 (111)
Q Consensus         2 EEvlL~~P~n~~-~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly   53 (111)
                      ++++-.+|.++. .+..+|.+++..|   +++.|+++|.++++++|++..+++
T Consensus        24 ~~al~~~p~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A           24 EEFLQTEPVGKDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHH
Confidence            456778899988 8999999999888   889999999999999998888773

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.84  E-value=4.4e-05  Score=47.31  Aligned_cols=60  Identities=17%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.....+
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           36 GKAIELNPANAVYFCNRAAAYSKLG---NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhh---chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence            4567788999999999999999988   89999999999999999999999888777665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.80  E-value=4.4e-05  Score=47.90  Aligned_cols=60  Identities=17%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+...+.+
T Consensus        40 ~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           40 TEAIKRNPKDAKLYSNRAACYTKLL---EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh
Confidence            5677889999999999999999888   89999999999999999999999998887766543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.80  E-value=3e-05  Score=51.45  Aligned_cols=60  Identities=13%  Similarity=0.015  Sum_probs=53.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+|.+...+..+|.+++..|   +++.|+++|.++++++|++..+|+++-.|..+..
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   66 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAG---KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG   66 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh
Confidence            46788899999999999999999999   9999999999999999999999999988876543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.79  E-value=4.5e-05  Score=46.57  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....+
T Consensus        28 ~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           28 SEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            5677789999999999999999998   89999999999999999999999988877765443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.79  E-value=1.9e-05  Score=50.79  Aligned_cols=59  Identities=8%  Similarity=-0.120  Sum_probs=51.8

Q ss_pred             ccchhc---CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLH---HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~---~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-.   +|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.|..++.
T Consensus        14 ~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A           14 EKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence            455666   5999999999999999999   9999999999999999999999998887776544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.79  E-value=8.4e-06  Score=55.31  Aligned_cols=60  Identities=17%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +.++-.+|.++..+..+|.+++-+|   +++.|+++|.++|+++|++..+++.+-.|-..+.+
T Consensus        21 ~~a~~~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A           21 QGSTPSPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             HHHSCSHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHhcccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            3456677888889999999999999   99999999999999999999999999888776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.72  E-value=5.5e-05  Score=51.08  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+-.+
T Consensus        97 ~~a~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           97 QRAIALNTVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            4567788999999999999999998   89999999999999999999999988776553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.71  E-value=2.8e-05  Score=56.36  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcC--------CcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQG--------GLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~G--------g~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ||++|-++|.++-.+-.+|-+++..|        +.++++.|+++|-+||+++|++.-....+.++-.
T Consensus        69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            47889999999999999999999987        2358999999999999999999766666665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.71  E-value=8e-05  Score=45.16  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +|.++..+..+|.+++..|   +++.|..+|.++++++|++.++++++-.+....
T Consensus         2 ~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~   53 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAG---NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL   53 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence            5666677777777777776   777777777777777777777777666655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.70  E-value=4.8e-05  Score=51.19  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH--HhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL--YGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal--yGL~l~~~~l~~   64 (111)
                      +.++-++|.++..+..+|.+++..|   +++.|+++|.++++++|++..++  -|+..+-.++..
T Consensus        69 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           69 ELATVVDPKYSKAWSRLGLARFDMA---DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999   99999999999999999988755  445555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.70  E-value=0.00083  Score=46.79  Aligned_cols=61  Identities=25%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             CccchhcCCCCHHH-------HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC--chHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLL-------HQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~-------h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~--~lRalyGL~l~~~~l~~   64 (111)
                      +++++-..|.++.+       +..+|.+++..|   +++.|+.+|.++++++|+  +..+++.+-.+......
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG---NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc---cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence            35678899999955       666666666666   999999999999999999  99999999888765443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.68  E-value=4.8e-05  Score=48.75  Aligned_cols=57  Identities=11%  Similarity=-0.095  Sum_probs=50.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC------CCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~------~~~lRalyGL~l~~~~   61 (111)
                      +.++-++|.++..+..+|.+++..|   +++.|+.+|.++++++      |++..++..+..|-.+
T Consensus        62 ~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           62 NKAIEKDPNFVRAYIRKATAQIAVK---EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            5678899999999999999999999   9999999999999999      8888888777766543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.68  E-value=0.0001  Score=49.47  Aligned_cols=57  Identities=16%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      ..+|.+...|..+|.+++.+|   +++.|+.+|.++|+++|++..++|.+-.+...+.+.
T Consensus        57 ~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  113 (162)
T 3rkv_A           57 ELDRKNIPLYANMSQCYLNIG---DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL  113 (162)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH
Confidence            457889999999999999999   999999999999999999999999998887765543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.66  E-value=1.2e-05  Score=54.47  Aligned_cols=47  Identities=17%  Similarity=0.085  Sum_probs=43.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      +++++-.+|.++..+..+|.+++-+|   +++.|+++|.+||+++|++.+
T Consensus       130 ~~~~l~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          130 YEKTISIKPGFIRAYQSIGLAYEGKG---LRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCccCHH
Confidence            35678899999999999999999999   999999999999999998865

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.66  E-value=8.8e-05  Score=45.23  Aligned_cols=50  Identities=18%  Similarity=0.094  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ...+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....+
T Consensus         4 ~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   53 (118)
T 1elw_A            4 VNELKEKGNKALSVG---NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD   53 (118)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc
Confidence            345678899999988   99999999999999999999999988887766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.65  E-value=0.00013  Score=44.77  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=51.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.....
T Consensus        33 ~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   91 (125)
T 1na0_A           33 QKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   91 (125)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            5667788999999999999999998   8999999999999999999999988877766544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.62  E-value=4.7e-05  Score=51.67  Aligned_cols=59  Identities=17%  Similarity=0.025  Sum_probs=53.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.++-++|.+...+..+|.+++..|   +++.|..+|.++++++|++..+|+++-.|...+.
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   69 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG   69 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh
Confidence            4577889999999999999999999   9999999999999999999999999988876544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.62  E-value=0.00012  Score=51.95  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=51.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|..+|.++++++|++..+++.+-.+....
T Consensus        29 ~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A           29 ERALKENPQDPEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            5678889999999999999999999   899999999999999999999988887776655

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.61  E-value=0.00011  Score=46.03  Aligned_cols=53  Identities=21%  Similarity=0.314  Sum_probs=46.6

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ..|.+..-+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   63 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL   63 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT
T ss_pred             cCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence            46788888999999999999   899999999999999999999999888876543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.60  E-value=3.9e-05  Score=50.72  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ...|..+|.++|-.|   +++.|+.+|.+||+++|++..+++++-.|-..+.+
T Consensus         8 A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~   57 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQK---DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK   57 (127)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh
Confidence            345667788888887   78888888888888888888888877777665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.60  E-value=0.00016  Score=52.11  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             ccchhcCCCCHHH----HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLL----HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~----h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.++.+    +..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          258 ESVMKTEPSVAEYTVRSKERICHCFSKDE---KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            4556667777644    445777777777   7777777777777777777777777666655433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=0.00016  Score=46.24  Aligned_cols=51  Identities=14%  Similarity=0.081  Sum_probs=26.9

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSCH   60 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~~   60 (111)
                      ..|.+...+..+|.+++..|   +++.|.++|.++++++|++   ..+++.+-.+..
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~   76 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCG---DYGGALAAYTQALGLDATPQDQAVLHRNRAACHL   76 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            34555555555555555555   5555555555555555554   455555444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.57  E-value=0.00015  Score=50.09  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .+..+|.+++..|   +++.|+++|.++++++|++.+++|.+-.+...
T Consensus        90 ~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  134 (198)
T 2fbn_A           90 CNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLGVANMY  134 (198)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            3344455555444   44555555555555555555555544444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.54  E-value=0.00017  Score=44.56  Aligned_cols=54  Identities=19%  Similarity=0.100  Sum_probs=47.2

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ..|.+...+..+|.+++..|   +++.|..+|.++++++|++..+++.+-.+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVE---NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG   60 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cchhhhHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Confidence            45778888999999999998   9999999999999999999999998888776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.54  E-value=0.00016  Score=47.12  Aligned_cols=59  Identities=19%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++++-.+..++.
T Consensus        37 ~~al~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~   95 (166)
T 1a17_A           37 SQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALG   95 (166)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            4567788999999999999999888   8999999999999999999999988877765543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.52  E-value=0.00012  Score=49.40  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+
T Consensus        34 ~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           34 QDKIRANPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4567788999999999999999998   89999999999999999998888877766

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.00016  Score=46.22  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             CccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          1 MEELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         1 ~EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      +++++-..|.+   +..+..+|.+++..|   +++.|+++|.++++++|++..++|.+-.+...+.+.
T Consensus        51 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  115 (148)
T 2dba_A           51 YTQALGLDATPQDQAVLHRNRAACHLKLE---DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL  115 (148)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH
Confidence            35678889988   899999999999998   999999999999999999999999988887766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.50  E-value=0.00019  Score=54.89  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=51.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +.+|-++|.+...+.++|.+++-+|   +++.|+.+|.++++++|++..+++.+-.+...+.+
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999988   89999999999999999999998888877765553

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.49  E-value=0.00015  Score=45.85  Aligned_cols=57  Identities=16%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             ccchhcCCCCH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~---~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~~~   61 (111)
                      ++++-..|.++   ..+..+|.+++..|   +++.|+++|.+++++.|++   ..++|.+-.|-..
T Consensus        26 ~~~~~~~p~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           26 LSFLELYPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHCSSSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            45667789888   68889999999999   9999999999999999998   7888887766553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.48  E-value=7.9e-05  Score=49.98  Aligned_cols=58  Identities=9%  Similarity=0.019  Sum_probs=48.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH-HHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA-LYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa-lyGL~l~~~~l   62 (111)
                      +.+|-++|.++..|.++|.+++..|   +++.|+.+|.++++++|++..+ .-.|..+-..+
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAW---KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHh---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999   9999999999999999998844 33444444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.47  E-value=0.00026  Score=46.61  Aligned_cols=60  Identities=8%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |+++|-++|.++.++..+|.+++.+|   +++.|+++|.++|+++|++..++..+..+-.++.
T Consensus        31 y~~Al~~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           31 YDKAIELDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            35678899999999999999999999   9999999999999999988777766655544444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.45  E-value=0.00031  Score=45.70  Aligned_cols=54  Identities=11%  Similarity=0.007  Sum_probs=47.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..++..+.++
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALG---KFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567789999999999999999999   99999999999999999998888554444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.45  E-value=0.00012  Score=51.69  Aligned_cols=59  Identities=12%  Similarity=-0.071  Sum_probs=51.8

Q ss_pred             ccchhcCCCCHHHHHH----------------HHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQR----------------YADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~r----------------lAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-.+|.++..+..                +|.+++..|   +++.|+.+|.++++++|++..+++.+-.+-....
T Consensus        28 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  102 (208)
T 3urz_A           28 RQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR---NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG  102 (208)
T ss_dssp             HHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            4667788988888877                999999999   9999999999999999999999999887766544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.43  E-value=0.00036  Score=42.71  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=44.0

Q ss_pred             CCCC-HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          8 HPHN-HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         8 ~P~n-~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +|.+ ...+..+|.+++..|   +++.|+++|.++++.+|++..+++.+-.+.....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   57 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   57 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC
Confidence            5655 778889999999998   9999999999999999999999998887766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00025  Score=48.93  Aligned_cols=54  Identities=20%  Similarity=0.094  Sum_probs=30.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++-..|.++..+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.
T Consensus       164 ~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          164 EMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            444455555555555565555555   555566666666666665555555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.40  E-value=0.00015  Score=43.86  Aligned_cols=58  Identities=21%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC--chHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~--~lRalyGL~l~~~~l   62 (111)
                      +.++-..|.+...+..+|.+++..|   +++.|+++|.++++++|+  +..+++.+-.+..++
T Consensus        30 ~~a~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           30 EKAIQLDPEESKYWLMKGKALYNLE---RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence            4567789999999999999999999   899999999999999999  999999887776533

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.39  E-value=0.00025  Score=49.69  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++++-.+....
T Consensus        67 ~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           67 SQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence            4566778888888888898888888   888899999999999888888888887766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.38  E-value=0.00016  Score=44.84  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc-------hHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-------IRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~-------lRalyGL~l~~   59 (111)
                      +++-..|.++..+..+|.+++..|   +++.|..+|.+++++.|++       .++++.+-.+.
T Consensus        29 ~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~   89 (131)
T 1elr_A           29 KAKELDPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence            444556666666666666666666   6666666666666666654       55555544443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.38  E-value=0.00027  Score=54.48  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+|+++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+...+.
T Consensus        48 ~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  107 (537)
T 3fp2_A           48 YQYAIELDPNEPVFYSNISACYISTG---DLEKVIEFTTKALEIKPDHSKALLRRASANESLG  107 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence            35778899999999999999999999   9999999999999999999999999988876554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.37  E-value=0.00033  Score=48.35  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +.++-++|.+...+.++|.+++..|   +++.|+++|.++++++|++..++..+..|...+..
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFG---FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999   99999999999999999999999998888776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.35  E-value=0.00023  Score=51.50  Aligned_cols=62  Identities=16%  Similarity=0.250  Sum_probs=54.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGL-------ENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~-------enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.++-++|.+.-.+..+|.++...|+.       +.++.|+..|-+||+++|++..|+|.+=.+-..+.
T Consensus        26 ~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           26 ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            567889999999999999999988743       25779999999999999999999999888877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.32  E-value=0.00038  Score=51.69  Aligned_cols=58  Identities=14%  Similarity=0.120  Sum_probs=51.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.++.++..+|.+++..|   +++.|.++|.++++++|++..++|.+-.+-..+
T Consensus        28 ~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A           28 GRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            5677789999999999999999999   999999999999999999999999887766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.31  E-value=0.00038  Score=48.53  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=35.8

Q ss_pred             cchhcCC-CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          3 ELFLHHP-HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         3 EvlL~~P-~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++-.+| .++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+-..
T Consensus        32 ~al~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   88 (228)
T 4i17_A           32 EYLKLTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLANAYIGKSAAYRD   88 (228)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            4455565 66666666677766666   66677777777777777666666666555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.30  E-value=0.00034  Score=55.86  Aligned_cols=60  Identities=12%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++|-++|.+...+.++|.+++.+|   +++.|+++|.++++++|++..+++.+..+-.++.+
T Consensus       341 ~~al~~~p~~~~a~~~~g~a~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          341 DKALGLDSANEKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999998   89999999999999999999999888887776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.29  E-value=0.00061  Score=46.37  Aligned_cols=55  Identities=15%  Similarity=-0.009  Sum_probs=31.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~l~~~   60 (111)
                      .++-.+|.++-.|..+|.++...|   +++.|+.+|.++++++|++  ..+++.+..+..
T Consensus        99 ~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A           99 QELAANPDNFELACELAVQYNQVG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            344556666666666666666666   5666666666666666543  335555544433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.27  E-value=0.00023  Score=50.90  Aligned_cols=53  Identities=9%  Similarity=-0.033  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.....+
T Consensus       233 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          233 DKWEPLLNNLGHVCRKLK---KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCCHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            555566667777777776   67777777777777777777777777666655543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.26  E-value=0.0002  Score=56.73  Aligned_cols=49  Identities=12%  Similarity=0.050  Sum_probs=19.0

Q ss_pred             hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      |.++|.++..+..+|.++..+|   +++.|+..|.++|+++|+|..+|+.+-
T Consensus       159 l~l~P~~~~a~~~~g~~~~~~g---~~~eAl~~~~kal~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          159 IEEQPKNYQVWHHRRVLVEWLR---DPSQELEFIADILNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            3333333333333333333333   333333334444444443333333333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.25  E-value=0.00091  Score=42.56  Aligned_cols=54  Identities=15%  Similarity=0.006  Sum_probs=47.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      .+|.+...+..+|.+++..|   +++.|..+|.++++++|++..+++.+-.|...+.
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~   57 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ   57 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CccccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc
Confidence            46889999999999999999   9999999999999999999999999988876543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.25  E-value=0.00034  Score=49.60  Aligned_cols=57  Identities=16%  Similarity=0.034  Sum_probs=48.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhc-----------CCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQ-----------GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~-----------Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +.++-++|.++..+..+|.++...           |   +++.|+..|.++++++|++..+++.+-.+-..
T Consensus        63 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           63 KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG---YLEQALSVLKDAERVNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            566778999999999999999988           7   89999999999999999999888877666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.24  E-value=0.00056  Score=50.60  Aligned_cols=58  Identities=24%  Similarity=0.378  Sum_probs=37.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..+.
T Consensus       237 ~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          237 NAALTVRPEDYSLWNRLGATLANGD---RSEEAVEAYTRALEIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence            3455566666666666666666666   666677777777776666666666665555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.23  E-value=0.0007  Score=44.04  Aligned_cols=59  Identities=14%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|.++|.++++++|++.++++.+-.+.....
T Consensus        66 ~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           66 ERSLADAPDNVKVATVLGLTYVQVQ---KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            4566778999999999999999888   8899999999999999988888888777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.22  E-value=0.00038  Score=46.80  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             ccchhcCCCCHHHHHHHHHH-HHhcCCcccH--HHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADI-LYTQGGLENI--ELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi-~Yt~Gg~enl--~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++++-.+|.++..+..+|.+ ++..|   ++  +.|+++|.++++++|++..+++.+-.+...
T Consensus        68 ~~al~~~p~~~~~~~~la~~l~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           68 RQALQLRGENAELYAALATVLYYQAS---QHMTAQTRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHTT---TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            56778899999999999999 55666   66  999999999999999999999988776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.22  E-value=0.0013  Score=56.43  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.+|-++|.+...|..+|.+++.+|   +++.|+.+|.+||+++|++..+++++-.+...+.
T Consensus        33 ~kAl~l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g   91 (723)
T 4gyw_A           33 RKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ   91 (723)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            5677888999999999999999888   8899999999999999999999888877765543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.21  E-value=0.00069  Score=41.56  Aligned_cols=56  Identities=21%  Similarity=0.335  Sum_probs=47.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..
T Consensus        25 ~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A           25 QKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHhc---CHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4566678999999999999999888   8999999999999999999888887765543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.19  E-value=0.00072  Score=41.46  Aligned_cols=55  Identities=22%  Similarity=0.354  Sum_probs=47.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+..+.
T Consensus        59 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           59 QKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4566778999999999999999998   899999999999999999988887765443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.16  E-value=0.00068  Score=46.34  Aligned_cols=46  Identities=11%  Similarity=0.048  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      ++..+..+|.+++..|   +++.|+++|.++++++|++..+++++-.+.
T Consensus        36 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A           36 HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3444455555555555   555555555555555555555555444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.16  E-value=0.0011  Score=39.17  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+-.
T Consensus        33 ~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           33 QKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4667789999999999999999999   9999999999999999999999988766543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.15  E-value=0.00077  Score=48.42  Aligned_cols=59  Identities=15%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....
T Consensus        27 ~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A           27 HAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            5677789999999999999999998   8999999999999999999999988887776544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.14  E-value=0.0007  Score=53.57  Aligned_cols=60  Identities=8%  Similarity=-0.022  Sum_probs=53.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLEN-IELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~en-l~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +.+|-++|.+...+..+|.+++..|   + ++.|++.|.++|+++|++..+|+.+-.+...+.+
T Consensus       121 ~~al~l~P~~~~a~~~~g~~l~~~g---~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~  181 (382)
T 2h6f_A          121 RDAIELNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  181 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCccCHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence            5678899999999999999999998   6 9999999999999999999999998888776543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.11  E-value=0.00047  Score=48.51  Aligned_cols=58  Identities=10%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.++..+..+|.+.|..+   +++.|.++|.++++++|++..+++.+-.+...+
T Consensus       132 ~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  189 (272)
T 3u4t_A          132 EKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFVKVLELKPNIYIGYLWRARANAAQ  189 (272)
T ss_dssp             GGGCCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            3455556666666666665555554   666666666666666666666666655555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.09  E-value=0.00089  Score=49.49  Aligned_cols=58  Identities=24%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+....
T Consensus        89 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           89 EAAILQDPGDAEAWQFLGITQAENE---NEQAAIVALQRCLELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence            5677789999999999999999999   899999999999999999999999887776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.07  E-value=0.0018  Score=42.06  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-..|.++..+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+....
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           32 EQVYDADAFDVDVALHLGIAYVKTG---AVDRGTELLERSLADAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             TTTCCTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            5677789999999999999999998   899999999999999999999988876665443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.06  E-value=0.0012  Score=48.39  Aligned_cols=58  Identities=24%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+....
T Consensus        88 ~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           88 EAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            4667788999999999999999988   899999999999999999999988887776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.05  E-value=0.0011  Score=48.44  Aligned_cols=55  Identities=27%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +++-..|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..
T Consensus       242 ~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          242 AALSVRPNDYLLWNKLGATLANGN---QSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            344445555555555555555555   5555555555555555555555555444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.05  E-value=0.00083  Score=51.28  Aligned_cols=59  Identities=15%  Similarity=0.034  Sum_probs=52.3

Q ss_pred             ccchhcCCCC---------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHN---------------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n---------------~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-++|.+               ...+..+|.+++-+|   +++.|+.+|.++++++|++..++|.+-.+...+.
T Consensus       171 ~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             HHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            4667788888               689999999999999   9999999999999999999999999888776544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.04  E-value=0.00088  Score=50.07  Aligned_cols=59  Identities=25%  Similarity=0.153  Sum_probs=49.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.+...+..+|.++...|   +++.|+++|.++++++|++..+++.+-.+..+..
T Consensus       295 ~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          295 NTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            5667788999999999999999888   8899999999999999999888888877655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.03  E-value=0.0019  Score=45.28  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      +.++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-
T Consensus        98 ~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           98 QAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            5667789999999999999999999   999999999999999999999999888

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.02  E-value=0.0012  Score=41.64  Aligned_cols=59  Identities=10%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC--CchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~--~~lRalyGL~l~~~~l~   63 (111)
                      ++++-.+|.+...+..+|.++...|   +++.|+.+|.++++++|  .+..++-.+......+.
T Consensus        43 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           43 RAALDFDPTYSVAWKWLGKTLQGQG---DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            5677889999999999999999999   99999999999999998  45555555555444444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.00  E-value=0.0014  Score=51.24  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      |+..-..|.+...+..+|.+++-+|   +++.|+++|.++++++|++..++|.+-.+...+.+.
T Consensus       263 ~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  323 (370)
T 1ihg_A          263 ADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY  323 (370)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH
Confidence            3455578888999999999999998   899999999999999999999999988887765543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.99  E-value=0.00095  Score=41.98  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      +++++-.+|.++..+..+|.+++..|   +++.|+.+|.++++++|
T Consensus        30 ~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           30 FEELVETDPDYVGTYYHLGKLYERLD---RTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhh
Confidence            35678899999999999999999999   99999999999999987

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.99  E-value=0.00044  Score=45.24  Aligned_cols=46  Identities=11%  Similarity=0.046  Sum_probs=37.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      +.++-++|.++-.+..+|.++...|   +++.|+.+|.++++++|++.+
T Consensus        75 ~~al~l~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           75 NHARMLDPKDIAVHAALAVSHTNEH---NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC-------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCCC
Confidence            5678899999999999999999999   999999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.96  E-value=0.00096  Score=41.18  Aligned_cols=58  Identities=12%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             ccchhcCCCC-------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHN-------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n-------~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.+       +..+..+|.+++..|   +++.|+++|.+++++.| +...+..+..+-..+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEE---KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            3455566666       888999999999998   99999999999999999 5777777776665444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0023  Score=39.08  Aligned_cols=50  Identities=16%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.|...+.
T Consensus         3 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   52 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQG---LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG   52 (111)
T ss_dssp             HHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence            3456778899999999   9999999999999999999999999888776544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.92  E-value=0.0015  Score=48.80  Aligned_cols=57  Identities=19%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++++-..|.++..+..+|.++.-+|   +++.|..+|.++++++|++..+++.+..+...
T Consensus       190 ~~~l~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          190 QEMADKCSPTLLLLNGQAACHMAQG---RWEAAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4556667777777777777777777   77777777777777777777777776655543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.91  E-value=0.0021  Score=44.05  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++-..|.+...+..+|.+++..|   +++.|.++|.+++++.|++..+++.+-.+.
T Consensus        48 ~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           48 KAIEENKEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            344455656666666666666555   555666666666666555555555544443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.91  E-value=0.00085  Score=42.80  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=42.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      ++++-..|.++..+..+|.+++-.|   +++.|+.+|.+++++.|++..
T Consensus        51 ~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           51 ANGVKQFPNHQALRVFYAMVLYNLG---RYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHH
Confidence            5678889999999999999999999   999999999999999997654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.90  E-value=0.0014  Score=52.33  Aligned_cols=61  Identities=11%  Similarity=-0.085  Sum_probs=54.8

Q ss_pred             ccchhcCC---CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          2 EELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         2 EEvlL~~P---~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      ++++-++|   .++..+..+|.+++-.|   +++.|+.+|.++++++|++..+++.+-.+...+.+.
T Consensus       245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          245 AQAEKVDRKASSNPDLHLNRATLHKYEE---SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HHHHHHCGGGGGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            55677899   99999999999999999   999999999999999999999999998887766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.00096  Score=45.94  Aligned_cols=54  Identities=9%  Similarity=-0.125  Sum_probs=47.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC------CCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~------~~~lRalyGL~l~   58 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+.+|.++++++      |++..++-.|..|
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAVK---EYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            5677789999999999999999999   9999999999999999      8887776665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.88  E-value=0.0017  Score=43.71  Aligned_cols=51  Identities=14%  Similarity=0.093  Sum_probs=25.5

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      ++-..|.+...+..+|.++...|   +++.|+++|.++++++|++..+++.+-.
T Consensus        34 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A           34 ALKSDPKNELAWLVRAEIYQYLK---VNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34444555555555555555554   4555555555555555555444444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.87  E-value=0.0012  Score=56.71  Aligned_cols=53  Identities=28%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +|-++|.+...|..+|.+++..|   +++.|+++|.+||+++|++..+++.|-.+-
T Consensus       103 Al~l~P~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l  155 (723)
T 4gyw_A          103 AIQINPAFADAHSNLASIHKDSG---NIPEAIASYRTALKLKPDFPDAYCNLAHCL  155 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence            34444444444444454444444   445555555555555555555544444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.87  E-value=0.002  Score=45.87  Aligned_cols=57  Identities=21%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+...
T Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           45 EAVCQAAPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            4667788999999999999999998   89999999999999999999999888766543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.86  E-value=0.00064  Score=52.07  Aligned_cols=53  Identities=11%  Similarity=0.006  Sum_probs=23.1

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      .+|-++|.+...+.++|.+++..|   +++.|+++|.++++++|++..+++.|..+
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g---~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELG---QMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHTTC---------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            345556666666666666666655   56666666666666666655555554433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.85  E-value=0.0026  Score=39.94  Aligned_cols=51  Identities=12%  Similarity=-0.048  Sum_probs=43.9

Q ss_pred             ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212          2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus         2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      ++++-..|.+   +..+..+|.+++..|   +++.|+++|.++++..|++..+....
T Consensus        63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           63 RDLVSRYPTHDKAAGGLLKLGLSQYGEG---KNTEAQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHHHCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            5677788999   888999999999999   99999999999999999887654433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.85  E-value=0.0011  Score=55.50  Aligned_cols=59  Identities=14%  Similarity=0.054  Sum_probs=48.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-.+|.++..|..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..++.
T Consensus       457 ~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g  515 (681)
T 2pzi_A          457 DDLAERVGWRWRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPGELAPKLALAATAELAG  515 (681)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred             HHHhccCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            4567778889888888899888888   8888999999999999888888888777765443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.84  E-value=0.0028  Score=47.72  Aligned_cols=59  Identities=20%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.+...+..+|.++...|   +++.|+++|.++++++|++..++.++-.+-..+.
T Consensus       319 ~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          319 SEVLQMEPDNVNALKDRAEAYLIEE---MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence            4556678888888888888888888   8888999999998888888888888876655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0015  Score=49.73  Aligned_cols=59  Identities=8%  Similarity=0.061  Sum_probs=50.4

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+| ++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..++.
T Consensus        29 ~~~al~~~p-~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A           29 YNWALELKE-DPVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHHHHHCC-CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCc-cHHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence            356777889 6888999999999999   8999999999999999999999998877765543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.84  E-value=0.0016  Score=49.02  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++..+|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~   70 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAG---QLADALSQFHAAVDGDPDNYIAYYRRATVF   70 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            444455555555555555555555   455555555555555555555555444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.83  E-value=0.0029  Score=44.02  Aligned_cols=59  Identities=10%  Similarity=-0.032  Sum_probs=47.2

Q ss_pred             ccchh--cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFL--HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL--~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-  ..|.++..+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            34445  67888888888999988888   8889999999999999988888888877665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.82  E-value=0.002  Score=45.92  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+.
T Consensus       163 ~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  216 (327)
T 3cv0_A          163 AALEMNPNDAQLHASLGVLYNLSN---NYDSAAANLRRAVELRPDDAQLWNKLGATL  216 (327)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            344445555555555555555555   455555555555555555555544444333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.82  E-value=0.0028  Score=50.83  Aligned_cols=56  Identities=14%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ++++-.+|.+...+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+..
T Consensus        13 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   68 (568)
T 2vsy_A           13 RAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRW   68 (568)
T ss_dssp             --------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4455556666666666666666666   6666666666666666666666665555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.80  E-value=0.0029  Score=43.34  Aligned_cols=52  Identities=10%  Similarity=-0.013  Sum_probs=25.9

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+
T Consensus        83 ~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  134 (243)
T 2q7f_A           83 ALELDSSAATAYYGAGNVYVVKE---MYKEAKDMFEKALRAGMENGDLFYMLGTV  134 (243)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHcCCcchHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34444555555555555555554   45555555555555555544444444333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.78  E-value=0.0022  Score=51.38  Aligned_cols=58  Identities=14%  Similarity=0.033  Sum_probs=47.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      ++++-.+|.+...+..+|.+++..|   +++.|.++|.++++++|++..+++.+-.+....
T Consensus        47 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  104 (568)
T 2vsy_A           47 QRGLALHPGHPEAVARLGRVRWTQQ---RHAEAAVLLQQASDAAPEHPGIALWLGHALEDA  104 (568)
T ss_dssp             HHHHTTSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            5667788888888888999888888   888899999999999988888888877665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.77  E-value=0.0029  Score=42.54  Aligned_cols=50  Identities=16%  Similarity=0.018  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      .|.++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+..
T Consensus       109 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  158 (225)
T 2vq2_A          109 YPTPYIANLNKGICSAKQG---QFGLAEAYLKRSLAAQPQFPPAFKELARTKM  158 (225)
T ss_dssp             CSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            4455556666666666665   5666666666666666666666665555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.76  E-value=0.0024  Score=45.58  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             CccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC---chHHHHhHHHHHHH
Q psy14212          1 MEELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK---NIRALYGLALSCHQ   61 (111)
Q Consensus         1 ~EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~---~lRalyGL~l~~~~   61 (111)
                      +++++-..|.+   +..+..+|.+++-.|   +++.|+.+|.+++++.|+   ...++|.+-.|-..
T Consensus        38 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           38 FKAVFTYGRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHHGGGCSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            35677788888   888999999999998   899999999999999884   45677776666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.74  E-value=0.0028  Score=44.05  Aligned_cols=57  Identities=25%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--cCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN--LNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~ale--L~~~~lRalyGL~l~~~~   61 (111)
                      ++++-..|.+...+..+|.+++..|   +++.|+++|.++++  ..|++..+++.+-.+...
T Consensus        95 ~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  153 (252)
T 2ho1_A           95 RKALASDSRNARVLNNYGGFLYEQK---RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ  153 (252)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCcHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence            4566678888888888888888887   78888888888888  777777777777665544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.72  E-value=0.012  Score=46.79  Aligned_cols=64  Identities=11%  Similarity=-0.044  Sum_probs=54.2

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhc---CCc--ccHHHHHHHHHHHhccCC---CchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQ---GGL--ENIELAISHYLMAINLNE---KNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~---Gg~--enl~~A~kyf~~aleL~~---~~lRalyGL~l~~~~l~~   64 (111)
                      +++++-++|.++..+..+|.++...   .|.  .+++.|+++|.++++++|   ++..+++.+-.+...+.+
T Consensus       202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~  273 (474)
T 4abn_A          202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence            3567889999999999999999888   111  299999999999999999   999999999888765443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.72  E-value=0.0031  Score=42.97  Aligned_cols=45  Identities=16%  Similarity=0.078  Sum_probs=38.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI   49 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l   49 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++.
T Consensus        61 ~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           61 TRSINRDKHLAVAYFQRGMLYYQTE---KYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHhCccchHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcc
Confidence            4567788999999999999999888   89999999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.72  E-value=0.0028  Score=51.08  Aligned_cols=59  Identities=19%  Similarity=0.145  Sum_probs=45.1

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-.+|.+...+..+|.+++.+|   +++.|+++|.+|++++|++..+++.+-.+-.++.
T Consensus        30 ~~Al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           30 SQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            4566678888888888888888877   7888888888888888888888877766655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.71  E-value=0.0028  Score=47.29  Aligned_cols=56  Identities=20%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .++-.+|.+...+..+|.+++..|   +++.|+.+|.++++++|++..+++++-.+..+
T Consensus        58 ~a~~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  113 (388)
T 1w3b_A           58 LAIKQNPLLAEAYSNLGNVYKERG---QLQEAIEHYRHALRLKPDFIDGYINLAAALVA  113 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence            345567777777777788777777   78888888888888888888777777655543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.65  E-value=0.023  Score=43.22  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      |+++-..|.++..+..+|.+++..|   ++..|..+|.+|++++|++..+++.+-.|-..
T Consensus       237 ~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          237 EEALEKAPGVTDVLRSAAKFYRRKD---EPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            5677889999999999999999999   89999999999999999999999988776543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.64  E-value=0.0069  Score=38.82  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +....++..||.++|-+|   +++.|+.+|.+++++.|++.+++..+...-
T Consensus        43 ~~~~~i~~~L~~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~n~~~~~   90 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence            456788999999999999   999999999999999999999987776333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.63  E-value=0.0037  Score=46.27  Aligned_cols=57  Identities=12%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~l~~~~   61 (111)
                      ++++-.+|.++-.+..+|.++...|   +++.|+..|.++++++|++  ..++..+..+-..
T Consensus       209 ~~al~~~P~~~~~~~~la~~l~~~g---~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          209 QQQVAENPEDAALATQLALQLHQVG---RNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            3456677888888888888888887   7888888888888888877  6666666655543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.63  E-value=0.0021  Score=51.19  Aligned_cols=60  Identities=12%  Similarity=0.003  Sum_probs=52.4

Q ss_pred             ccchhcCCCC---------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHN---------------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n---------------~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++|-++|.+               ...+..+|.+++-+|   +++.|+.+|.++|+++|++..++|.+-.+..++.+
T Consensus       292 ~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~  366 (457)
T 1kt0_A          292 GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE  366 (457)
T ss_dssp             HHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC
Confidence            4567778888               688999999999999   99999999999999999999999999887765543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.59  E-value=0.0028  Score=44.28  Aligned_cols=53  Identities=19%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL   57 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l   57 (111)
                      ++++-..|.+...+..+|.+++-.|   +++.|+++|.++++++|++......+.+
T Consensus       101 ~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A          101 DSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhcCccccHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            5677889999999999999999999   9999999999999999988755444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.56  E-value=0.002  Score=54.00  Aligned_cols=54  Identities=9%  Similarity=-0.082  Sum_probs=45.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-++|.+...+..+|.+++..|   +++.|+.+|.++++++|++..|++.+-.+
T Consensus       524 ~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          524 QTVWSTNDGVISAAFGLARARSAEG---DRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHcC---CHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            5677788888888888888888888   88889999999999988888888776655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.54  E-value=0.0025  Score=45.04  Aligned_cols=55  Identities=20%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             ccchhcCCCCH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHH
Q psy14212          2 EELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~---~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~   59 (111)
                      ++++-..|.++   ..+..+|.++|..|   +++.|+..|.++++++|++..   |+|.+-++-
T Consensus        28 ~~~~~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~   88 (225)
T 2yhc_A           28 EALDNRYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN   88 (225)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence            56677778764   57888999999999   999999999999999998875   666555544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.51  E-value=0.0067  Score=44.82  Aligned_cols=55  Identities=18%  Similarity=0.076  Sum_probs=42.7

Q ss_pred             ccchh-cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH-HHHhHHHHH
Q psy14212          2 EELFL-HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-ALYGLALSC   59 (111)
Q Consensus         2 EEvlL-~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR-alyGL~l~~   59 (111)
                      |.++- ++|.+..+|..+|.++...|   +++.|++.|.+++++.|++.. +|..+..+.
T Consensus        88 ~rAl~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A           88 ERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            45566 58999888999999888888   888899999999999887764 665554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.46  E-value=0.0036  Score=44.61  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             ccchhcCCCCHHHH-----------------HHHHHHHHhcCCcccHHHHHHHHHHHhccCCC---chHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAINLNEK---NIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h-----------------~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~---~lRalyGL~l~~~~   61 (111)
                      ++++-..|.+....                 ..+|.+++..|   +++.|+++|.++++..|+   ...++|.+-.+-..
T Consensus       121 ~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          121 QLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE---LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             HHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            56777889887666                 67799999999   999999999999999997   56789988888776


Q ss_pred             HH
Q psy14212         62 VL   63 (111)
Q Consensus        62 l~   63 (111)
                      +.
T Consensus       198 ~g  199 (261)
T 3qky_A          198 YA  199 (261)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.45  E-value=0.0053  Score=43.73  Aligned_cols=54  Identities=11%  Similarity=-0.017  Sum_probs=30.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +++-..|.++..+..+|.++...|   +++.|.++|.++++++|++..+++.+-.+.
T Consensus       150 ~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  203 (330)
T 3hym_B          150 TAAQLMKGCHLPMLYIGLEYGLTN---NSKLAERFFSQALSIAPEDPFVMHEVGVVA  203 (330)
T ss_dssp             HHHHHTTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            344445555555555555555555   556666666666666666655555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.44  E-value=0.0019  Score=49.34  Aligned_cols=59  Identities=20%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             ccchhcCCCCHH-----------------HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHL-----------------LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~-----------------~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      ++++-..|.++.                 .|..+|.+++.+|   +++.|+++|.++|+++|++..++|.+-.+...+.
T Consensus       203 ~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g  278 (338)
T 2if4_A          203 EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG  278 (338)
T ss_dssp             HHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            456677888773                 7888999999998   8999999999999999999999999888765544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.41  E-value=0.0035  Score=50.49  Aligned_cols=54  Identities=11%  Similarity=0.007  Sum_probs=49.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      ++++-++|.+...+..+|.+++.+|   +++.|.++|.++++++|++..+++.+..+
T Consensus        64 ~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           64 TRAIELDKKYIKGYYRRAASNMALG---KFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5677889999999999999999999   99999999999999999998888877766

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.35  E-value=0.003  Score=50.22  Aligned_cols=57  Identities=16%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             CccchhcCCC--CHHHHHHHHHHHHhc----CCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHH
Q psy14212          1 MEELFLHHPH--NHLLHQRYADILYTQ----GGLENIELAISHYLMAINLNEKN---IRALYGLALSC   59 (111)
Q Consensus         1 ~EEvlL~~P~--n~~~h~rlAEi~Yt~----Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~   59 (111)
                      +|.+|-++|+  +.--|.-+|-++|..    ||  +.+.|++||-+||++||+.   .+.+||=.+|.
T Consensus       186 lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          186 LERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--GMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            4678899999  677999999888885    44  8999999999999999964   69999988876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.35  E-value=0.0037  Score=48.85  Aligned_cols=59  Identities=14%  Similarity=0.004  Sum_probs=52.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|-++|.+...+.++|.+++..|   +++.|+++|.+|++++|++..++..+..+-..+.
T Consensus       297 ~~al~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          297 LEALEIDPSNTKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999   9999999999999999999988888777766544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.35  E-value=0.0043  Score=48.60  Aligned_cols=54  Identities=9%  Similarity=0.001  Sum_probs=41.6

Q ss_pred             CCCC-HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          8 HPHN-HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         8 ~P~n-~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      .|.+ ...+..+|++++..|   +++.|+++|.++++++|++..+++.+-.+..+..+
T Consensus       511 ~p~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYRKLK---MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             CSGGGHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             chhhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            5665 567778888888888   88888888888888888888888877777665443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.32  E-value=0.0058  Score=46.93  Aligned_cols=55  Identities=15%  Similarity=0.083  Sum_probs=34.3

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +++-..|.++..+..+|.+++..|   +++.|+.+|.++++++|++..+++++-.+..
T Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          301 KAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            445556666666666666666666   6666666666666666666666666555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.06  E-value=0.0019  Score=49.30  Aligned_cols=54  Identities=24%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      |.++-++|.++-+|..+|.+.|..|.....+.|..+|.+|++++|++..+++.+
T Consensus       162 ~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l  215 (472)
T 4g1t_A          162 EKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL  215 (472)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence            455666777777777777776666544455566666777777777665554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.95  E-value=0.0088  Score=44.15  Aligned_cols=54  Identities=11%  Similarity=0.014  Sum_probs=43.9

Q ss_pred             ccchhcCCCCHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHL-LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~-~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +.+|-+.|.++- .+..+|.++...|   +++.|++.|.++++++|.+...+.|....
T Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          123 NRLLAIEDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHTSSSSCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHhccccCccHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            566778898875 8889999988888   78889999999999999887777765544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.88  E-value=0.02  Score=42.19  Aligned_cols=52  Identities=15%  Similarity=0.010  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.|-.++.
T Consensus         1 p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   52 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ   52 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            677788889999999999   9999999999999999999999999888776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.86  E-value=0.016  Score=45.40  Aligned_cols=55  Identities=16%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+..+..
T Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  418 (597)
T 2xpi_A          364 DLVDRHPEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMDPQFGPAWIGFAHSFA  418 (597)
T ss_dssp             HHHHHCTTSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhhCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344456777777777777777776   6777777777777777777777666655543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.012  Score=44.69  Aligned_cols=46  Identities=24%  Similarity=0.057  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHh---cCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212         14 LHQRYADILYT---QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus        14 ~h~rlAEi~Yt---~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      .+..+|.+++.   .|   +++.|+++|.++++++|++..+++.+-.+..+.
T Consensus       414 ~~~~l~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  462 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVE---NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ  462 (514)
T ss_dssp             HHHHHHHHHHTSCCTT---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            45555666666   55   666666666666666666666666555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.84  E-value=0.011  Score=42.52  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc-------CCCchHHH----HhHHHHHHHHHh
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINL-------NEKNIRAL----YGLALSCHQVLT   64 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL-------~~~~lRal----yGL~l~~~~l~~   64 (111)
                      ..|.-.|.++.-.|   +++.|+..|.+||++       +|++.-||    |..-.+-..+.+
T Consensus        58 ~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr  117 (159)
T 2hr2_A           58 FCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR  117 (159)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC
Confidence            38889999999999   899999999999999       99999999    988777665543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.83  E-value=0.0035  Score=42.53  Aligned_cols=45  Identities=16%  Similarity=-0.032  Sum_probs=36.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      ++++-.+|.++..+..+|.++...|   +++.|+++|.+++++.| +..
T Consensus        30 ~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A           30 QTLSDELQSRGDVKLAKADCLLETK---QFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             HTSCHHHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGC-CHH
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccC-ChH
Confidence            4567778888888888888888888   78888888888888888 554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.81  E-value=0.022  Score=42.10  Aligned_cols=51  Identities=22%  Similarity=0.069  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .|.+.-.+..+|..+...|   +++.|...|.++++++|++.++++++-.+..+
T Consensus       113 lp~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~  163 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQES---NYTDALPLLXDAWQLSNQNGEIGLLLAETLIA  163 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence            4888888889999999888   89999999999999999999999998876544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.55  E-value=0.037  Score=33.35  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=38.9

Q ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH-HHHhHHHHHHHHH
Q psy14212         16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIR-ALYGLALSCHQVL   63 (111)
Q Consensus        16 ~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR-alyGL~l~~~~l~   63 (111)
                      ...|.+++..|   +++.|+++|.++++++|++.. +++.+-.|.....
T Consensus         4 ~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~   49 (99)
T 2kc7_A            4 LKTIKELINQG---DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG   49 (99)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC
Confidence            35688899888   999999999999999999999 9998887766544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.53  E-value=0.016  Score=41.58  Aligned_cols=60  Identities=17%  Similarity=-0.053  Sum_probs=40.7

Q ss_pred             ccchhcC-C-CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHH-P-HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~-P-~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |+++-.. | .+--++--+|=.+|=.|   ++..|++||-++++..|+|.-|.....++-+++..
T Consensus        59 e~ll~~~~p~~~rd~lY~LAv~~~kl~---~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           59 EELLPKGSKEEQRDYVFYLAVGNYRLK---EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCccchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            4555555 5 22223333344446666   88888888888888888888888888887776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.24  E-value=0.023  Score=39.97  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             ccchhcCCCCHHHH-----------------HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch---HHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAINLNEKNI---RALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h-----------------~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l---RalyGL~l~~~~   61 (111)
                      ++++-..|.+....                 ..+|++++..|   ++..|+..|.++++..|++.   .+++.+-.|..+
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG---AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            45677788876433                 46788888888   99999999999999999765   778888777665


Q ss_pred             HH
Q psy14212         62 VL   63 (111)
Q Consensus        62 l~   63 (111)
                      +.
T Consensus       197 ~g  198 (225)
T 2yhc_A          197 MQ  198 (225)
T ss_dssp             TT
T ss_pred             cC
Confidence            44

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.06  E-value=0.035  Score=43.86  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY   53 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly   53 (111)
                      |.++-..|.++.+...+|+.....|   +++.|++.|.++|+.+| +...|+
T Consensus        36 e~al~~~P~~~~~w~~~~~~~~~~~---~~~~a~~~~~ral~~~p-~~~lw~   83 (530)
T 2ooe_A           36 ERLVAQFPSSGRFWKLYIEAEIKAK---NYDKVEKLFQRCLMKVL-HIDLWK   83 (530)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTTCC-CHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCC-ChHHHH
Confidence            4455666777777777777766666   66777777777777777 344333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.02  E-value=0.028  Score=36.00  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      ++++|-.+|+|.--..-+|.++|-.|   ++..|+.+|.++++.+|..
T Consensus        32 l~~AL~~dp~~~rA~~~lg~~~~~~g---~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           32 LEQALQLEPYNEAALSLIANDHFISF---RFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence            35778899999999999999999999   9999999999999999974

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.02  E-value=0.046  Score=43.23  Aligned_cols=56  Identities=11%  Similarity=-0.109  Sum_probs=48.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      +|+.|-.+|.+...+..+++. ...|   +++.|++.|.++++..|++.+.|+.+.-...
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~---~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~   57 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQ---PIDKARKTYERLVAQFPSSGRFWKLYIEAEI   57 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSS---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            478889999999999999984 4455   8999999999999999999999887765543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.57  E-value=0.024  Score=39.07  Aligned_cols=53  Identities=19%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc--------CCCchHHHHhHHHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--------NEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL--------~~~~lRalyGL~l~~~~l~   63 (111)
                      .|.....+..+|.+++..|   +++.|..+|.+++++        .|....+++.+-.+.....
T Consensus       123 ~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence            4677788999999999999   999999999999999        6777888888777765443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.50  E-value=0.014  Score=42.01  Aligned_cols=40  Identities=15%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             CCCCHHHH----HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          8 HPHNHLLH----QRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         8 ~P~n~~~h----~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      +|.+.-.|    .+.|.++..+|   +++.|+..|-+|++++|++--
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lg---r~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLG---RGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCchHHHHHHHHHhHHHHHHHCC---CHHHHHHHHHHHHhcCCCcHH
Confidence            99999999    99999999999   999999999999999986543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=93.98  E-value=0.044  Score=40.68  Aligned_cols=56  Identities=7%  Similarity=0.068  Sum_probs=34.5

Q ss_pred             ccchhcCCCCH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc------CCCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNH----LLHQRYADILYTQGGLENIELAISHYLMAINL------NEKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~----~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL------~~~~lRalyGL~l~~~   60 (111)
                      ++++-..|.++    ..+..+|.+++..|   +++.|..+|.+++++      .+...++++.+-.+..
T Consensus        72 ~~al~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           72 QAAIQAGTEDLRTLSAIYSQLGNAYFYLG---DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccChhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            44555666665    35666777777776   677777777777776      3445555555544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.94  E-value=0.041  Score=40.35  Aligned_cols=57  Identities=16%  Similarity=-0.028  Sum_probs=41.9

Q ss_pred             ccchhcCCCC------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH-------HHHhHHHHHHH
Q psy14212          2 EELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-------ALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n------~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR-------alyGL~l~~~~   61 (111)
                      ++++-+.|.+      ...+..+|+++.-.|   +++.|+.+|.++++++|++..       +++++-.|...
T Consensus       142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          142 ELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence            3445555543      456788999999999   999999999999999986532       55666555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=93.90  E-value=0.064  Score=37.51  Aligned_cols=56  Identities=9%  Similarity=0.021  Sum_probs=38.1

Q ss_pred             ccchhcCCCCH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC------CCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNH----LLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~----~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~------~~~lRalyGL~l~~~   60 (111)
                      ++++-..|.++    ..+..+|.+++..|   +++.|..+|.+++++.      +...++++.+-.+..
T Consensus        29 ~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           29 EAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            45566677774    56677888888887   7888888888888773      344556655554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.84  E-value=0.18  Score=35.60  Aligned_cols=32  Identities=9%  Similarity=0.014  Sum_probs=14.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAIN   43 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~ale   43 (111)
                      |.++..+..+|.+++..|   +++.|.++|.++++
T Consensus         3 ~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~   34 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEK---DFTQAKKYFEKACD   34 (273)
T ss_dssp             --CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH
Confidence            444444444444444444   44444444444444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.19  E-value=0.064  Score=39.32  Aligned_cols=47  Identities=9%  Similarity=-0.051  Sum_probs=33.6

Q ss_pred             ccchhcCCCCHH-------HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212          2 EELFLHHPHNHL-------LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA   51 (111)
Q Consensus         2 EEvlL~~P~n~~-------~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa   51 (111)
                      ++++-+.|.+..       ++..+|.++.-+|   ++..|+.+|.++++++|++..+
T Consensus       182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT---DAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCc
Confidence            456667776643       5788999999999   9999999999999999976543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=93.01  E-value=0.089  Score=38.37  Aligned_cols=56  Identities=9%  Similarity=0.021  Sum_probs=36.3

Q ss_pred             ccchhcCCCCH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC------CCchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNH----LLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~----~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~------~~~lRalyGL~l~~~   60 (111)
                      ++++-..|.++    ..+..+|.+++..|   +++.|..+|.+++++.      |...++++.+-.+..
T Consensus        33 ~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           33 EAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            45556677774    45667777777777   7777888887777773      344555555554443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=92.93  E-value=0.053  Score=37.31  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc--------CCCchHHHHhHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--------NEKNIRALYGLALSCHQ   61 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL--------~~~~lRalyGL~l~~~~   61 (111)
                      .|.....+..+|.+++..|   +++.|..+|.+++++        +|....+++.+-.+...
T Consensus        81 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  139 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN  139 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            4667778899999999999   999999999999999        46777888777666543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.91  E-value=0.16  Score=37.62  Aligned_cols=32  Identities=13%  Similarity=0.032  Sum_probs=20.1

Q ss_pred             cHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212         30 NIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus        30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++.|.+.|.++++.+|++..+++++-.|..+
T Consensus       181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            56666666666666666666666666655544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=92.72  E-value=0.051  Score=38.17  Aligned_cols=41  Identities=15%  Similarity=0.108  Sum_probs=33.6

Q ss_pred             chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212          4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus         4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ++-..|.+...+..+|++++..|   +++.|.++|.+++++.|+
T Consensus       270 ~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          270 CKVDSPTVTTTLKNLGALYRRQG---KFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCchHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhc
Confidence            34467888899999999999999   999999999999998774

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.43  E-value=0.18  Score=35.34  Aligned_cols=52  Identities=19%  Similarity=0.120  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCC--CchHHHHhHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNE--KNIRALYGLALSC   59 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~--~~lRalyGL~l~~   59 (111)
                      .|.++..+..+|.+++.- |...|+..|+++|.+|++..|  ++..|+|-|-.+-
T Consensus        81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y  135 (212)
T 3rjv_A           81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY  135 (212)
T ss_dssp             HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence            345555555566666542 224466666666666666655  3455555544443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=91.82  E-value=0.25  Score=34.54  Aligned_cols=52  Identities=19%  Similarity=0.103  Sum_probs=43.2

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc--------CCCchHHHHhHHHHHHH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--------NEKNIRALYGLALSCHQ   61 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL--------~~~~lRalyGL~l~~~~   61 (111)
                      -.|.+...+..+|.+++..|   +++.|+++|.+++++        .|...++++.+-.+...
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~   81 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQG---RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD   81 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            36788889999999999999   999999999999997        45677777777666544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=90.94  E-value=1.3  Score=34.09  Aligned_cols=61  Identities=16%  Similarity=-0.031  Sum_probs=52.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.+|.++|.++-....=++++...|. .+++.+++.+..+|++||++.-+|+--..+..++.
T Consensus        57 ~~~L~~nP~~~taWn~R~~~L~~l~~-~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           57 ELGINELASHYTIWIYRFNILKNLPN-RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcHHHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence            57899999998887777999988874 48999999999999999999999888877775544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=90.84  E-value=0.11  Score=38.51  Aligned_cols=54  Identities=19%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc------CCCchHHHHhHHHHHHHHHh
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL------NEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL------~~~~lRalyGL~l~~~~l~~   64 (111)
                      .|.....+..+|.+++..|   +++.|..+|.+++++      .+...++++.+-.+.....+
T Consensus       122 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMG---RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            4677788999999999999   999999999999999      45677788877777665554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.75  E-value=0.24  Score=40.07  Aligned_cols=41  Identities=12%  Similarity=0.028  Sum_probs=35.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      +...|.++..|..+|=+....|   +++.|+.++.+|++|||+.
T Consensus       270 ~~~~~~~a~~~~alal~~l~~g---d~d~A~~~l~rAl~Ln~s~  310 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKG---KTDESYQAINTGIDLEMSW  310 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCCH
T ss_pred             cccCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCH
Confidence            4567999999999998888888   8999999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.62  E-value=0.9  Score=31.91  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212          9 PHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt----~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      |.+...+..+|.+++.    .|   +++.|.++|.++++++  +..+++.+-.+..
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~---~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~   85 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEK---NLKKAASFYAKACDLN--YSNGCHLLGNLYY   85 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCC---CHHHHHHHHHHHHHCC--CHHHHHHHHHHHh
Confidence            6777777788888777    44   7888888888888875  5667666655543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=90.53  E-value=0.34  Score=30.89  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ...+||.+-+.|   +++.|..||+.||..||+
T Consensus        20 eV~~GE~L~~~g---~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           20 EIQLGEELLAQG---DYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHcCC
Confidence            467899999999   688999999999999985

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=90.45  E-value=0.2  Score=33.55  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ...+||.+-+.|   +++.|..||+.||..||+
T Consensus        23 eV~lGE~L~~~g---~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           23 EIQLGEELLAQG---DYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHcCC
Confidence            467899999999   699999999999999985

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=90.34  E-value=0.12  Score=38.19  Aligned_cols=45  Identities=11%  Similarity=0.049  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc------hHHHHhHHHHH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALYGLALSC   59 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~------lRalyGL~l~~   59 (111)
                      ...+..+|+++.-+|   +++.|+.+|.+++++.+++      .++++++.+|-
T Consensus       155 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~  205 (307)
T 2ifu_A          155 AELIGKASRLLVRQQ---KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ  205 (307)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence            456777888888888   8889999999999887632      23555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.24  E-value=0.43  Score=38.60  Aligned_cols=54  Identities=9%  Similarity=-0.180  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +|.+|-++.|- --+...+..+++..|+..|.+||++.|++.+|+=|+.+|.-.+
T Consensus       193 ~~~Aydl~Lra-~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~  246 (372)
T 3ly7_A          193 RGALLTNFYQA-HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR  246 (372)
T ss_dssp             SGGGHHHHHHH-HHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            44566666663 3333446788999999999999999999999999999988643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=90.05  E-value=0.49  Score=31.20  Aligned_cols=51  Identities=14%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             hcCC-CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC------CCchHHHHhHHHHH
Q psy14212          6 LHHP-HNHLLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSC   59 (111)
Q Consensus         6 L~~P-~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~------~~~lRalyGL~l~~   59 (111)
                      .-+| .....+..+|.+++..|   +++.|+.+|.+++++.      +...++++.+-.+.
T Consensus        19 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A           19 LAHPATASGARFMLGYVYAFMD---RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE   76 (203)
T ss_dssp             HTSTTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            3344 45566667777777777   7777777777777743      33445555544443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=89.61  E-value=0.47  Score=32.96  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ..+..+|.+++..|   +++.|.++|.+++++.+
T Consensus       184 ~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          184 RAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH
Confidence            34444555555555   45555555555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=88.58  E-value=0.82  Score=28.17  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc------hHHHHhHHHHH
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALYGLALSC   59 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~------lRalyGL~l~~   59 (111)
                      ..+..+|.+++..|   +++.|.++|.+++++.++.      .++++.+-.+.
T Consensus        50 ~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~   99 (164)
T 3ro3_A           50 IAYSNLGNAYIFLG---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY   99 (164)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            36677888888888   8888888888888887632      44555444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=88.42  E-value=0.31  Score=32.19  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc---CCC----chHHHHhHHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL---NEK----NIRALYGLALSCH   60 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL---~~~----~lRalyGL~l~~~   60 (111)
                      .|.....+..+|.+++..|   +++.|..+|.+++++   .++    ...+++.+-.+..
T Consensus        62 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAG---NWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            4455677888999999999   999999999999999   332    2344555444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=87.91  E-value=1.1  Score=31.20  Aligned_cols=46  Identities=11%  Similarity=-0.117  Sum_probs=24.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      +.++..+..+|.+++..|...|++.|+++|.+|++.  ++..|+|-|-
T Consensus        47 ~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~--g~~~a~~~Lg   92 (212)
T 3rjv_A           47 QGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA--GSKSGEIVLA   92 (212)
T ss_dssp             TTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            345555666666665522233666666666666543  3444444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=87.74  E-value=0.34  Score=36.15  Aligned_cols=46  Identities=15%  Similarity=0.004  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhcc-----C-CCchHHHHhHHHHHHHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINL-----N-EKNIRALYGLALSCHQV   62 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL-----~-~~~lRalyGL~l~~~~l   62 (111)
                      .+..+|.+++..|   +++.|+++|.+|+++     + |...++++.+-.+...+
T Consensus       226 ~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          226 TLYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence            5556777777777   788888888888883     4 56667777666665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=87.43  E-value=0.67  Score=34.47  Aligned_cols=33  Identities=6%  Similarity=0.062  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ....+..+|.+++.+|   ++..|.++|.+|+++.+
T Consensus       142 ~a~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~  174 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMK---QTYFSMDYARQAYEIYK  174 (383)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence            4467778888888888   78888888888888855

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=86.82  E-value=0.54  Score=38.88  Aligned_cols=62  Identities=8%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGL-------ENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~-------enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|..+|.++-....=++++...|..       +.++.+.+.|.++++.+|++..||+-=..+..++.
T Consensus        53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            578899999887766668888887731       12899999999999999999999987766665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=86.60  E-value=0.28  Score=35.56  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc------hHHHHhHHHHHHHH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALYGLALSCHQV   62 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~------lRalyGL~l~~~~l   62 (111)
                      ...+.-+|.+++-.|   +++.|+++|.+|++++++.      .++++.+-.|-.++
T Consensus       196 ~~~~~nlg~~y~~~~---~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          196 VKVRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            346678899999888   9999999999999998743      56666666665433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=86.37  E-value=1.3  Score=32.97  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----cCCCchHHHHhHHHHHHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAIN-----LNEKNIRALYGLALSCHQ   61 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~ale-----L~~~~lRalyGL~l~~~~   61 (111)
                      .+..+|.+++..|   +++.|+.+|.+|++     -+|...++++.+-.+..+
T Consensus       224 ~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          224 SLLNIANSYDRSG---DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             HHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            4556677777666   77777777777777     555556666666655543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=85.62  E-value=1.7  Score=31.32  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc---CCCc----hHHHHhHHHHHHH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINL---NEKN----IRALYGLALSCHQ   61 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL---~~~~----lRalyGL~l~~~~   61 (111)
                      ...+..+|.+++..|   +++.|..+|-+|+++   .|++    ..+++.+-.+...
T Consensus       155 ~~~~~~lg~~y~~~~---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          155 LYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            346677888888888   889999999999844   4442    2566666665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=85.48  E-value=8.3  Score=27.70  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch----HHHHhHHHHHH
Q psy14212         10 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCH   60 (111)
Q Consensus        10 ~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l----RalyGL~l~~~   60 (111)
                      .........|++++..|   +++.|+.+|.+++++.|++.    ++++.+-.+..
T Consensus         7 ~~~~~l~~~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~   58 (406)
T 3sf4_A            7 ASCLELALEGERLCKSG---DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF   58 (406)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence            34555678899999999   99999999999999999874    45555555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=85.43  E-value=0.58  Score=33.85  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccC-------CCchHHHHhHHHHHHHH
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLN-------EKNIRALYGLALSCHQV   62 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~-------~~~lRalyGL~l~~~~l   62 (111)
                      .+..+|.+++..|   +++.|..||.+|+++.       +...++++.+-.+...+
T Consensus       157 ~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          157 IENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            4666777777777   7788888888887422       23445666666555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=85.11  E-value=2.5  Score=33.45  Aligned_cols=59  Identities=14%  Similarity=0.038  Sum_probs=41.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +++|.++|.++-.-..=++++...|  .+++.+++.+..+++.+|+|.-+|+.-..+..++
T Consensus        78 ~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           78 EIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4677788877766555567776665  2477788888888888888777777777666665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=84.30  E-value=1.1  Score=34.44  Aligned_cols=62  Identities=11%  Similarity=-0.063  Sum_probs=43.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHH----HhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADIL----YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~----Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|..+|.++-...-=+.++    -..|...+++.++..+.++++.+|+|-.||+--..+..++.
T Consensus        93 ~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~  158 (306)
T 3dra_A           93 EEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD  158 (306)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            467788887765444445666    44432237888999999999999998888887776666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=83.38  E-value=0.7  Score=34.51  Aligned_cols=37  Identities=8%  Similarity=-0.104  Sum_probs=34.0

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      .+|.....+..+|.+++-.|   +++.|+.+|.+++++.+
T Consensus       256 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          256 VPDLLPKVLFGLSWTLCKAG---QTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             CGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCC
T ss_pred             CChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence            67888888999999999999   99999999999999976

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=82.97  E-value=4.3  Score=26.46  Aligned_cols=47  Identities=13%  Similarity=-0.012  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212         10 HNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus        10 ~n~~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      .++.-+..+|.+++.- |...|++.|+++|.+|.+.  ++..|.|-|-.+
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3455566666666652 2345777777777777766  455555554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=82.54  E-value=2.2  Score=35.22  Aligned_cols=58  Identities=9%  Similarity=-0.087  Sum_probs=45.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGL-----------ENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~-----------enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      +.+|-.+|.|.-...-.+-++..+++.           +.++.|+.+|.+||+++|+|--||+-+.-..
T Consensus       168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll  236 (567)
T 1dce_A          168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  236 (567)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            457788998877666667788776321           5789999999999999999888888665544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=82.52  E-value=1.5  Score=34.37  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINL   44 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL   44 (111)
                      |.++..+..+|.++|...+..|++.|.++|.+|++.
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            444444555555544332333444444444444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=82.48  E-value=1.5  Score=37.50  Aligned_cols=54  Identities=11%  Similarity=0.074  Sum_probs=35.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC--chHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~--~lRalyGL~l~   58 (111)
                      |..|-..|+++.+...|++.....|   +.+.||..|.+|++.+|+  ....+|-.++-
T Consensus       494 e~~Lk~~p~~~~~w~~y~~fe~~~~---~~~~AR~lferal~~~~~~~~~~~lw~~~~~  549 (679)
T 4e6h_A          494 ELGLKYFATDGEYINKYLDFLIYVN---EESQVKSLFESSIDKISDSHLLKMIFQKVIF  549 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4455556777777777777766666   667777777777777763  55556655543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=82.32  E-value=3.3  Score=30.27  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      |.....+..+|.+++..|   +++.|..+|.+++++++.
T Consensus       132 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWA---RLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             THHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhc
Confidence            455677888999999999   999999999999999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=81.67  E-value=2.7  Score=32.56  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      ...+..+|.+++..|..++++.|+++|.+|++.  ++..|+|.|
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  369 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL  369 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            344445555555443344555555555555554  334444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=81.63  E-value=2.7  Score=32.88  Aligned_cols=59  Identities=12%  Similarity=0.016  Sum_probs=35.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +++|..+|.|+-....=+-++...|. .+++.++..|.++++++|+|-.||+.-..+..+
T Consensus        98 ~~~L~~~PKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~  156 (331)
T 3dss_A           98 ESCLRVNPKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEADERNFHCWDYRRFVAAQ  156 (331)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCc-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45666677666554444556655552 246667777777777777766666655544443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=81.02  E-value=4.9  Score=28.83  Aligned_cols=44  Identities=11%  Similarity=0.018  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc------hHHHHhHHHHHHH
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALYGLALSCHQ   61 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~------lRalyGL~l~~~~   61 (111)
                      +..+|.++...|   +++.|..+|-+|+++.++.      .++++++-.+...
T Consensus       118 ~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A          118 QYYVAAYVLKKV---DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             HHHHHHHHHTSS---CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            445677766666   8999999999999886533      5667766665544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=80.83  E-value=2  Score=34.70  Aligned_cols=52  Identities=17%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLA   56 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~   56 (111)
                      ||.+|...|+.+-+...||...-..|   +++.|++-|.+|+.. |++  ++-.|+..
T Consensus       202 ye~al~~~p~~~~lW~~ya~~~~~~~---~~~~ar~i~erAi~~-P~~~~l~~~y~~~  255 (493)
T 2uy1_A          202 HNYILDSFYYAEEVYFFYSEYLIGIG---QKEKAKKVVERGIEM-SDGMFLSLYYGLV  255 (493)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence            46778889999999999999888777   789999999999999 954  44455543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=80.76  E-value=8.4  Score=29.97  Aligned_cols=56  Identities=13%  Similarity=0.076  Sum_probs=43.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC--CchHHHHhHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCH   60 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~--~~lRalyGL~l~~~   60 (111)
                      |+++-..|.+...+..+|.+++..|   +++.|++.+.+.|+-+|  +++.+..=+..+.-
T Consensus        90 ~~l~~~~~~~~~~~~~la~i~~~~g---~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L  147 (310)
T 3mv2_B           90 ENLLKDKQNSPYELYLLATAQAILG---DLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL  147 (310)
T ss_dssp             HHTTTTSCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence            4455444666777789999999998   99999999999999997  77777655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.12
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.08
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.75
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.45
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.35
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.3
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.74
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	94.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.68
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.66
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	92.81
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	91.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	90.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	89.41
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.81
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	85.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	82.02
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	80.47

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.2e-07  Score=62.48  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=55.5

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |+++|-++|.++.+|..+|.++.-.|   +++.|+++|.+||+++|++..||+.+-.+-.++..
T Consensus        27 ~~kal~~~p~~~~~~~~lg~~y~~~~---~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          27 YGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCHHHHHhHHHHHhhhh---hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            35788899999999999999999999   99999999999999999999999998888776543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.30  E-value=7.2e-07  Score=57.35  Aligned_cols=61  Identities=20%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++++-.+|.++..+..+|.++.-+|   ++..|+.+|.++|+++|++..++++|-.|-.....
T Consensus        39 ~~~al~~~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          39 FEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             Hhhhcccccccchhhhhhhhhhhhhh---hHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            46788999999999999999999888   99999999999999999999999999988876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.7e-07  Score=59.88  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |+++|-++|.++.+|..+|.+++.+|   +++.|...|-+||+++|++.+|++.+-.|...+.+
T Consensus        33 ~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          33 YSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccchhhhhhhhhhHHHHHhcc---ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            36788899999999999999999999   99999999999999999999999998888776554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.7e-07  Score=57.23  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |+++|-++|+++.++.-+|.+++..|   +++.|+.+|.++++++|++.++||.+-.|-..+.
T Consensus        26 ~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_          26 YSEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCcchhhhhcccccccccc---cccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            35788899999999999999999999   9999999999999999999999999988776544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.5e-06  Score=58.26  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|-++|+++..+.++|.+++-+|   ++..|+++|-++++++|+|..+..++..+-..+.
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhh---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5678888988888899998888888   8888999999999998888888877777655444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=7.3e-06  Score=54.99  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=53.8

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCC-------cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGG-------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg-------~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +|.++-++|+|+..+..+|.+++..+.       .+.++.|+++|-+||+++|++..|+|.+=.+-..+.
T Consensus        20 ~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          20 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            467889999999999999999998753       236789999999999999999999998877665443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.1e-06  Score=58.85  Aligned_cols=56  Identities=27%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .++-..|.+...+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+-..
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         296 TALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             hhhccCCccchhhhHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344455666666666666666665   66666666666666666666666655554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.93  E-value=9e-06  Score=54.52  Aligned_cols=48  Identities=19%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212         14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus        14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      .|.-+|-+++-+|   ++..|+++|.+||+++|+|.+|+|.+-.|-..+.+
T Consensus        69 ~~~Nla~~~~~l~---~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~  116 (153)
T d2fbna1          69 CNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF  116 (153)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHhc---ccchhhhhhhccccccchhhhhhHHhHHHHHHcCC
Confidence            4555677777777   67777777777777777777777777766665553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=9e-06  Score=56.00  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=50.4

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.+|-++|+++..+..+|.+++-.|   +++.|+++|-++++++|++..+++++-.+...+.
T Consensus        61 ~~al~l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          61 SQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHhhccCCCCHHHHhhhchHHHHHH---HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            5677889999999999999999888   8999999999999999999999988877765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.2e-05  Score=57.14  Aligned_cols=60  Identities=25%  Similarity=0.381  Sum_probs=55.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ++++-.+|.++..+..+|.+++..|   +++.|+++|.++++++|++.++++++-.+..++.+
T Consensus       196 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  255 (323)
T d1fcha_         196 TAALSVRPNDYLLWNKLGATLANGN---QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA  255 (323)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccccchhhhhhcccccc---cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC
Confidence            5678889999999999999999999   99999999999999999999999999888877654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.80  E-value=2.1e-05  Score=53.21  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=46.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +++|-++|+++-.|.+.|.+++.+|   +++.|++.|.++++++|+|..+.-.+..+-..+
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5677788888888888888888888   888888888888888888887776666555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=49.81  Aligned_cols=46  Identities=17%  Similarity=0.129  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      .-.+--+|.+++..|   +++.|+++|-++|+++|++.+|++-+...-.
T Consensus        46 ~~~l~~Lg~~~~~~g---~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          46 VSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcC---ChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            456777899999999   9999999999999999999999998866544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.7e-06  Score=53.66  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|-++|+++..+..+|.+++.+|   +++.|+..|-+||+++|++..+++.+--+-.++.
T Consensus        28 ~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_          28 DKAKELDPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHhHHHHHHHcC---chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            5678889999999999999999998   8999999999999999988877776655544444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.2e-05  Score=50.35  Aligned_cols=54  Identities=19%  Similarity=-0.000  Sum_probs=49.7

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +.++-++|.++-.+.++|.++..+|   +++.|++.|-++++++|++..++.++.-+
T Consensus        61 ~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          61 CKTVDLKPDWGKGYSRKAAALEFLN---RFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHhccchhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5678889999999999999999999   99999999999999999999999887644

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=3.2e-05  Score=51.91  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      +..-++|.+..++.-+|.++.-+|   +++.|+.+|-+||+++|++..|+|.+-.+-.++...
T Consensus        68 ~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~  127 (169)
T d1ihga1          68 DGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY  127 (169)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhChhhHHHHHHHHHHHHhhc---ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCH
Confidence            344567888888888888888888   888899999999999999999988887777665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.6e-05  Score=54.62  Aligned_cols=60  Identities=15%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++++-.+|.++..+..+|.+++-.|   +++.|+++|.++++++|++..+++.+-.+..+..
T Consensus        22 ~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_          22 CMQLWRQEPDNTGVLLLLSSIHFQCR---RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            35778889999999999999999999   9999999999999999999999998877765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.8e-05  Score=55.13  Aligned_cols=58  Identities=24%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +|++|-.+|+++..+..+|.+++..|   +++.|+++|.++++++|++..+++.+-.+-..
T Consensus        42 ~~~al~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          42 FEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHhhhccccccccccccccccccc
Confidence            36788899999999999999999999   99999999999999999999999988766544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.1e-05  Score=50.95  Aligned_cols=67  Identities=13%  Similarity=0.012  Sum_probs=56.7

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH--HHHhHHHHHHHHHhhhh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR--ALYGLALSCHQVLTSAK   67 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR--alyGL~l~~~~l~~~~k   67 (111)
                      |+..|-.+|.++-.+..||.+++..+..+++..|++.|.++++.+|++.+  +||.|-.|..++.+..+
T Consensus        22 Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          22 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            35678889999999999999999888777899999999999999987654  89999999888775543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.6e-05  Score=50.50  Aligned_cols=58  Identities=12%  Similarity=0.009  Sum_probs=51.9

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +.+|-++|+++..+.++|.+++.+|   ++..|.+.|-+++++.|++.++++.+..|...+
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g---~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALG---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999   999999999999999999999998887765433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=3.8e-05  Score=51.28  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCC--------cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGG--------LENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg--------~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      ++.+|-++|.++..+..+|-+++..|-        .++++.|.++|.+||+++|+|..++.+|-+|-+.
T Consensus        64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            357888999999999999999998873        2468999999999999999999999988888643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00027  Score=46.19  Aligned_cols=24  Identities=0%  Similarity=-0.054  Sum_probs=11.8

Q ss_pred             cHHHHHHHHHHHhccCCCchHHHH
Q psy14212         30 NIELAISHYLMAINLNEKNIRALY   53 (111)
Q Consensus        30 nl~~A~kyf~~aleL~~~~lRaly   53 (111)
                      +++.|.+.|-++++++|++..++|
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~   37 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQF   37 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHH
Confidence            455555555555555554444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00013  Score=49.87  Aligned_cols=59  Identities=17%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV   62 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l   62 (111)
                      +++++-++|.++..|..+|.+++..|   ++..|.++|.++++++|++..+.+++.++..++
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHh---hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            35788899999999999999999999   899999999999999999888877777665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00022  Score=49.19  Aligned_cols=54  Identities=11%  Similarity=0.024  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      .|.++-.+--+|-+++.+|   +++.|.++|.+||+++|++..+++.+-+|..++.+
T Consensus        32 ~~~~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            4556677778999999999   99999999999999999999999999999876554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.35  E-value=0.00046  Score=45.95  Aligned_cols=59  Identities=14%  Similarity=0.004  Sum_probs=53.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +.+|-++|.+.-.|.++|.+++.+|   +++.|+..|-++++++|+|..+...|..|-..+.
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~---~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999   9999999999999999999988888877766554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.30  E-value=0.00095  Score=44.13  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=53.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      +++|-++|.+.-.+.+.|.+++.+|   ++..|+.+|.++++++|+|.=+...+..|..+|..
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMYFG---FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999   99999999999999999998887777777766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=3.5e-05  Score=51.22  Aligned_cols=48  Identities=10%  Similarity=0.013  Sum_probs=42.5

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL   52 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal   52 (111)
                      +.+|-++|+++-.|.++|.+++.+|   +++.|.++|.++++++|++...+
T Consensus        62 ~~al~l~p~~~~a~~~lg~~~~~l~---~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          62 RRALELDGQSVKAHFFLGQCQLEME---SYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCcccHHHH
Confidence            5678899999999999999999999   99999999999999998544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00036  Score=51.22  Aligned_cols=60  Identities=8%  Similarity=-0.021  Sum_probs=44.2

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      +++|.++|.++..+...|.++...|+  +++.|..+|..+|+++|++..+|+.+-.+..++.
T Consensus        67 ~~ai~lnP~~~~a~~~r~~~l~~l~~--~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~  126 (315)
T d2h6fa1          67 RDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR  126 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCChHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc
Confidence            45677788888777777888777663  5777777888888888777777777776666544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0014  Score=42.06  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      +..+|..+|..|   ++..|+++|.+||+++|++..+++.+-.|..++.+.
T Consensus         7 ~k~~G~~~~~~~---~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~   54 (128)
T d1elra_           7 EKELGNDAYKKK---DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY   54 (128)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch
Confidence            456899999999   999999999999999999999999998888776644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.78  E-value=0.00065  Score=49.86  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS   58 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~   58 (111)
                      +++.|-.+|.|.-.+..||+++.-.|   +++.|++.|.++++++|++.++++.+...
T Consensus        19 l~~al~~~P~d~~ar~~La~lL~~~G---~~e~A~~~l~~a~~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1          19 LIEAIKASPKDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPEYLPGASQLRHL   73 (264)
T ss_dssp             HHHHHHTCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            46788899999999999999999999   99999999999999999999888765443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0011  Score=44.74  Aligned_cols=60  Identities=7%  Similarity=-0.026  Sum_probs=46.8

Q ss_pred             CccchhcCCCCH-HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212          1 MEELFLHHPHNH-LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL   63 (111)
Q Consensus         1 ~EEvlL~~P~n~-~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~   63 (111)
                      |||++-.+|.++ -..--+|-.+|=.|   +++.|++||-++|+.+|+|..|+.+..++-.++.
T Consensus        61 Le~~~~~~p~~~rd~lY~Lav~yyklg---dy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          61 LTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            467777778654 34344566688778   9999999999999999999999988888776654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.00037  Score=50.22  Aligned_cols=51  Identities=12%  Similarity=-0.075  Sum_probs=45.3

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL   55 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL   55 (111)
                      ++++-.+|.+...+..+|+++...|   +++.|+++|-++++++|++.+.|..|
T Consensus       266 ~~~~~~~p~~~~~~~~l~~~~~~~~---~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         266 QELEPENKWCLLTIILLMRALDPLL---YEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCTGG---GHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCcccHHHHHHH
Confidence            4567788999999999999999888   99999999999999999888877766

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00059  Score=50.04  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=28.4

Q ss_pred             cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212          3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus         3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      .+|-.+|.+...+...|.++.-+|   +++.|+.+|.++|+++|+|..+|+.+-.+..+
T Consensus       103 ~al~~~p~~~~a~~~~~~~~~~l~---~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         103 AIIEEQPKNYQVWHHRRVLVEWLR---DPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHhHHHHhhc---cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            344455555555555555555554   44445555555555555555555554444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00063  Score=45.80  Aligned_cols=50  Identities=18%  Similarity=0.042  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      ..|..+|.+++..|   +++.|..+|.++|+++|++..++|++-.|..++...
T Consensus        63 ~~~~nla~~y~k~~---~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  112 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF  112 (170)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhhh---hcccccchhhhhhhccccchhhhHHHHHHHHHhhhH
Confidence            45666899999998   999999999999999999999999999988876644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0015  Score=50.72  Aligned_cols=61  Identities=16%  Similarity=0.043  Sum_probs=54.3

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |++++-++|.+...|..+|-++...|   +...|+.||.+||.+.|.+.-|+..|...-.+...
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~---~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTT---CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            35678899999999999999999999   99999999999999999999999999877666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0018  Score=44.31  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212          1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus         1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ++++|-++|+++..|..+|-+++-+|   +++.|.++|.+||+..+.
T Consensus        59 ~~kAl~ldp~~~~a~~~~g~~~~~~g---~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          59 FTRSINRDKHLAVAYFQRGMLYYQTE---KYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhc---cHHHHHHHHHHHHHhCcc
Confidence            35788899999999999999999999   999999999999987663

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.69  E-value=0.011  Score=39.18  Aligned_cols=50  Identities=14%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212         13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS   65 (111)
Q Consensus        13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~   65 (111)
                      .++.-+|-+++-+|   +++.|+.+|.++++++|+|..++|-+-.|-..+...
T Consensus        65 ~~~~Nla~~~~~l~---~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~  114 (168)
T d1kt1a1          65 AAFLNLAMCYLKLR---EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF  114 (168)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhHHHHHHHhh---hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCH
Confidence            34556799999988   999999999999999999999999998887766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.46  E-value=0.016  Score=36.06  Aligned_cols=46  Identities=11%  Similarity=-0.009  Sum_probs=40.3

Q ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212         16 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus        16 ~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      -..|.+++-.|   ++..|+..|.++|+++|++..+|+.+-.|-.++.+
T Consensus        20 ~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   65 (112)
T d1hxia_          20 MEEGLSMLKLA---NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK   65 (112)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHh---hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh
Confidence            35688999988   99999999999999999999999999888765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.38  E-value=0.035  Score=39.35  Aligned_cols=60  Identities=10%  Similarity=-0.138  Sum_probs=45.0

Q ss_pred             ccchhcCCCCHHHH-HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          2 EELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         2 EEvlL~~P~n~~~h-~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      ++++-.+|.++... ...|.++...|   ..+.|+++|-++|+++|++..+|+.+-.+-..+..
T Consensus       133 ~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         133 ARFLEADERNFHCWDYRRFVAAQAAV---APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTCC---CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhhCchhhhhhhhHHHHHHHhcc---ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            45667788776654 45566666666   78889999999999999999999988777666553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.016  Score=41.27  Aligned_cols=44  Identities=9%  Similarity=-0.118  Sum_probs=32.8

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      |.++...|.+..+..+|++.....|   ++..||..|-++++.+|.+
T Consensus       193 e~~l~~~p~~~~~w~~y~~~~~~~g---~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         193 ELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCC
Confidence            4566677788888888888877777   7777888888888776643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.028  Score=43.29  Aligned_cols=47  Identities=21%  Similarity=0.101  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ   61 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~   61 (111)
                      +..+..+|+++.-.|   +++.|+.||.+|++++|++-++++-|-++...
T Consensus       152 ~~~~~~LG~l~~~~~---~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         152 QHCLVHLGDIARYRN---QTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            456778899999888   89999999999999999999999988777643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.66  E-value=0.012  Score=38.43  Aligned_cols=32  Identities=16%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212         12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus        12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      ...|..+|.+++-.|   +++.|+++|.++|+++|
T Consensus        55 a~~~~nlg~~~~~lg---~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          55 AFCHAGLAEALAGLR---SFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---ccchhhHhhhhhhhccc
Confidence            467888999999999   99999999999998876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.28  Score=32.49  Aligned_cols=42  Identities=7%  Similarity=0.148  Sum_probs=27.8

Q ss_pred             ccchhcCCCCH-----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212          2 EELFLHHPHNH-----LLHQRYADILYTQGGLENIELAISHYLMAINLNE   46 (111)
Q Consensus         2 EEvlL~~P~n~-----~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~   46 (111)
                      +++|-..|.++     ..+..+|++++..|   +++.|+++|.+++++.+
T Consensus        36 ~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_          36 KLALEELPPGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHTCCTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcCCCcHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence            34555666653     24455677777777   77777777777777665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.052  Score=32.76  Aligned_cols=45  Identities=13%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc-------hHHHHhHHHHHHHHH
Q psy14212         16 QRYADILYTQGGLENIELAISHYLMAINLNEKN-------IRALYGLALSCHQVL   63 (111)
Q Consensus        16 ~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~-------lRalyGL~l~~~~l~   63 (111)
                      -.+|-++|-.|   ++..|+.+|.+|+++.|++       ..+++-|-.|..++.
T Consensus         9 ~~lG~~~~~~g---~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g   60 (95)
T d1tjca_           9 FELGKVAYTEA---DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG   60 (95)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC
Confidence            37899999999   9999999999999998743       345655555544433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.23  E-value=0.9  Score=28.75  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=25.5

Q ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212         17 RYADILYTQGGLENIELAISHYLMAINLNEKN   48 (111)
Q Consensus        17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~   48 (111)
                      .-|.+++..|   +++.|.+.|.+||+++|++
T Consensus        14 ~~g~~~~~~g---~y~~Ai~~y~~Al~i~~~~   42 (156)
T d2hr2a1          14 SDAQRQLVAG---EYDEAAANCRRAMEISHTM   42 (156)
T ss_dssp             HHHHHHHHHT---CHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHhChhh
Confidence            3488999999   9999999999999999853

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.31  Score=32.30  Aligned_cols=48  Identities=19%  Similarity=0.048  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc-----hHHHHhHHHHHHH
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-----IRALYGLALSCHQ   61 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~-----lRalyGL~l~~~~   61 (111)
                      +.-+|.-.|++....|   +++.|.++|.+++++.|++     ..+++.+-.+...
T Consensus        11 ~ae~~~lrA~~~~~~g---~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~   63 (366)
T d1hz4a_          11 HAEFNALRAQVAINDG---NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC   63 (366)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence            3446666799999999   9999999999999999965     4566655544443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.16  E-value=0.16  Score=34.28  Aligned_cols=53  Identities=11%  Similarity=-0.077  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212          9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT   64 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~   64 (111)
                      |...-.+..+|+++...|   +.+.|+.+|-++|+++|.+-++++-+..+..+..+
T Consensus        64 ~~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr  116 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACG---RASAVIAELEALTFEHPYREPLWTQLITAYYLSDR  116 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence            344456777888888888   88888888888888888888888877777665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=90.41  E-value=0.25  Score=33.31  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212         11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH   60 (111)
Q Consensus        11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~   60 (111)
                      ||--...+|-.+|..|   |++.|+++|.+|.++  ++.+|.|.|-.+..
T Consensus         1 ~p~~~~~lG~~~~~~~---d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~   45 (265)
T d1ouva_           1 DPKELVGLGAKSYKEK---DFTQAKKYFEKACDL--KENSGCFNLGVLYY   45 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            3445567788888888   899999999999886  46778887766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.41  E-value=0.13  Score=34.73  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=35.0

Q ss_pred             ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Q psy14212          2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN   43 (111)
Q Consensus         2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~ale   43 (111)
                      +.++-++|.+-..|..++.+++.+|   +...|+..|-+..+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~G---r~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSD---RQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence            4567899999999999999999999   89999999998744

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.81  E-value=0.46  Score=33.19  Aligned_cols=41  Identities=22%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212          7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR   50 (111)
Q Consensus         7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR   50 (111)
                      +.|.+..++..||++.-..|   +++.|+..|-++++.+|.+..
T Consensus        94 ~~p~~~~l~~~ya~~~~~~~---~~~~a~~i~~~~l~~~~~~~~  134 (308)
T d2onda1          94 LLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPT  134 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTH
T ss_pred             cCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhcCChH
Confidence            47888888889998888888   788888888888888886543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.36  E-value=0.31  Score=31.05  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212         15 HQRYADILYTQGGLENIELAISHYLMAINLNEK   47 (111)
Q Consensus        15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~   47 (111)
                      ...+||-+.+.|   +++.+..||+.||..||+
T Consensus        23 eV~lGE~Ll~~G---~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          23 EIQLGEELLAQG---DYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHHHcCC
Confidence            457899999998   899999999999999984

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=82.02  E-value=1.7  Score=28.95  Aligned_cols=50  Identities=16%  Similarity=0.140  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212          8 HPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALSC   59 (111)
Q Consensus         8 ~P~n~~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~   59 (111)
                      .+.+...+..+|-+++.. |...|++.|+.+|.+|.++.  +..|.|-|=.+-
T Consensus       174 ~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y  224 (265)
T d1ouva_         174 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQ  224 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHH
Confidence            456777788888887774 44669999999999999984  677887655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=80.47  E-value=1.3  Score=27.32  Aligned_cols=48  Identities=15%  Similarity=0.051  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212          9 PHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLA   56 (111)
Q Consensus         9 P~n~~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~~~lRalyGL~   56 (111)
                      ..++.-...+|.++..- |...|.+.|.++|.+|.+..+...--..|..
T Consensus        52 ~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~  100 (133)
T d1klxa_          52 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK  100 (133)
T ss_dssp             TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHH
Confidence            45666677788877653 4567888899999999888875433334443