Psyllid ID: psy14213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MNFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcHHHHHHHcccEEEEccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHEEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHEEEEEEHcccccccccccEEEEccHccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHcHHHHHHHHEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnfssdyrgaFALVIPHLDLLISLFGAFClaslgiifpATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAiqedfhpktqIVKIEhhmrepkkfrqpigvfNVGIVLTALLFAITGMcgymkygtaaqgsmtlnIAEDQIMAQIVKLLYAFVIFFsyplqnfvpleLLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHekvsfgplgwilIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Flexible Loop (DISEMBL)
MNFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Low Complexity Region (SEG)
MNFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Disordered region (IsUnstruct)
******YRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAI***
Disordered Region (DISOPRED)
*NFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAI***
Disordered Region (DISEMBL)
MNFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Disordered Region (DISPRO)
*NFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIA**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFSSDYRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.632	0.365	0.301	1e-24
Q8CH36	500	Proton-coupled amino acid	yes	N/A	0.615	0.372	0.319	1e-22
Q6YBV0	504	Proton-coupled amino acid	yes	N/A	0.615	0.369	0.324	2e-22
Q7Z2H8	476	Proton-coupled amino acid	no	N/A	0.589	0.373	0.336	1e-19
Q495N2	470	Proton-coupled amino acid	no	N/A	0.629	0.404	0.311	1e-18
Q811P0	477	Proton-coupled amino acid	no	N/A	0.589	0.373	0.336	2e-18
Q4V8B1	477	Proton-coupled amino acid	no	N/A	0.589	0.373	0.321	2e-17
Q8K4D3	475	Proton-coupled amino acid	no	N/A	0.635	0.404	0.303	1e-16
Q924A5	475	Proton-coupled amino acid	no	N/A	0.635	0.404	0.303	1e-16
Q495M3	483	Proton-coupled amino acid	no	N/A	0.589	0.368	0.284	7e-11

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 115/202 (56%), Gaps = 11/202 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ MR+ K F + +   N+G+ +   L+      GY  +G   +GS+TLN+ +D  
Sbjct: 310 VLPLENRMRDKKDFSKAL---NIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSW 366

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q+VK+LY+F I+ +Y +Q +VP E++    +        + +KL+ E+  R  +V +T
Sbjct: 367 LYQLVKILYSFGIYVTYAIQYYVPAEII----LPAVTSRVQKTRKLLCEFTMRFFLVCLT 422

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
            A A++IP LDL+IS  GA   ++L +I P  + I+    E +S     W+++KD+ + V
Sbjct: 423 CAVAVLIPRLDLVISFVGAVSSSTLALILPPLVEIITYHKENLS----PWVIMKDVGIAV 478

Query: 279 FGIFIMVSGTVISIMDIFTAIA 300
            G    ++GT ++I ++   I+
Sbjct: 479 IGFVGFIAGTYVTIEEMIYPIS 500

Xenopus laevis (taxid: 8355)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 11/197 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ MRE K+F Q     N+G+ +  +L+      GYM +    +GS+TLN+ +D  
Sbjct: 287 VLPLENQMRESKRFPQ---ALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMW 343

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VK+LY+F IF +Y +Q +VP E++    I         K K I E+  R ++V IT
Sbjct: 344 LYQSVKILYSFGIFVTYSIQFYVPAEII----IPGVTARLHAKWKRICEFGIRSLLVSIT 399

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
            A A++IP LD++IS  GA   ++L +I P  + IL    +  +     W+++K+I++  
Sbjct: 400 RAGAILIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKDHYNI----WMILKNISIAF 455

Query: 279 FGIFIMVSGTVISIMDI 295
            G+   + GT +++ +I
Sbjct: 456 TGVVGFLLGTYVTVEEI 472

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 11/197 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ M+E K+F Q     N+G+ +   L+      GYM +    +GS+TLN+ +D  
Sbjct: 290 VLPLENQMKESKRFPQ---ALNIGMGIVTTLYVTLATLGYMCFHDEIKGSITLNLPQDVW 346

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VK+LY+F IF +Y +Q +VP E++    I     ++  K K I E+  R  +V IT
Sbjct: 347 LYQSVKILYSFGIFVTYSIQFYVPAEII----IPGITSKFHTKWKQICEFGIRSFLVSIT 402

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
            A A++IP LD++IS  GA   ++L +I P  + IL    E  +     W+++K+I++  
Sbjct: 403 CAGAILIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKEHYNI----WMVLKNISIAF 458

Query: 279 FGIFIMVSGTVISIMDI 295
            G+   + GT I++ +I
Sbjct: 459 TGVVGFLLGTYITVEEI 475

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 111/190 (58%), Gaps = 12/190 (6%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ M++P+KF  P+ +  +G+V+  +L+   G  GY+++G   QGS+TLN+  +  
Sbjct: 275 VLPLENKMKDPRKF--PL-ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLP-NCW 330

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKLLY+  IFF+Y LQ +VP E++   ++ +      E  +L+V+   R V+V +T
Sbjct: 331 LYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRA----PEHCELVVDLFVRTVLVCLT 386

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L +I P  + +     E +S  PL   + KD  + +
Sbjct: 387 CILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMS--PL--TIFKDALISI 442

Query: 279 FGIFIMVSGT 288
            G    V GT
Sbjct: 443 LGFVGFVVGT 452

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 114/202 (56%), Gaps = 12/202 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +++ M+ P++F     V  +G+ +  +L+ + G  GYMK+G+  Q S+TLN+  +  
Sbjct: 270 VLPLKNQMKHPQQFS---FVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNL-PNCW 325

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKL+Y+  IFF+Y LQ  VP E++    I   + + SE   L V+   R  +V +T
Sbjct: 326 LYQSVKLMYSIGIFFTYALQFHVPAEII----IPFAISQVSESWALFVDLSVRSALVCLT 381

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L +I PA + I++   E +S   +     KDI + +
Sbjct: 382 CVSAILIPRLDLVISLVGSVSSSALALIIPALLEIVIFYSEDMSCVTIA----KDIMISI 437

Query: 279 FGIFIMVSGTVISIMDIFTAIA 300
            G+   + GT  ++ ++   I+
Sbjct: 438 VGLLGCIFGTYQALYELPQPIS 459

Homo sapiens (taxid: 9606)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 12/190 (6%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ ++  M+ P++F     V  +G+     L+   G  GYMK+GT  Q S+TLN+    +
Sbjct: 277 VLPLKSQMKSPQQFP---AVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICWL 333

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             Q VKL+Y+  IFF+Y LQ  VP E++ + Y+   +   SE   L V+   R  +V +T
Sbjct: 334 Y-QSVKLMYSVGIFFTYALQFHVPAEII-VPYVVSRV---SENWALFVDLTVRTALVCLT 388

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L II P  + I     E +S       ++KDI + +
Sbjct: 389 CFSAVLIPRLDLVISLVGSVSSSALAIIIPPLLEIATFYSENISCA----TIVKDIMISI 444

Query: 279 FGIFIMVSGT 288
            G+   V GT
Sbjct: 445 LGLLGCVLGT 454

Mus musculus (taxid: 10090)

>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 12/190 (6%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ ++  M+ P++F     V  +G+     L+   G  GYMK+G   Q S+TLN+  +  
Sbjct: 277 VLPLKSQMKSPQQFP---AVLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNL-PNCW 332

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKL+Y+  IFF+Y LQ  VP E++ + Y+   +   SE   L ++   R  +V +T
Sbjct: 333 LYQSVKLMYSVGIFFTYALQFHVPAEII-VPYV---VSRASENWALFIDLTVRAALVCLT 388

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L +I P  + I     E +S   +     KDI + +
Sbjct: 389 CFSAVLIPRLDLVISLVGSVSSSALALIIPPLLEIATFYSENISCTTIA----KDIMISI 444

Query: 279 FGIFIMVSGT 288
            G+   V GT
Sbjct: 445 LGLLGCVLGT 454

Rattus norvegicus (taxid: 10116)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 112/204 (54%), Gaps = 12/204 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ M++ +KF  P+ +  +G+ +  +L+   G  GY+++G   +GS+TLN+  +  
Sbjct: 274 VLPLENKMKDSQKF--PL-ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLP-NCW 329

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKLLY+  IFF+Y LQ +V  E++    I   +    E  +L+V+   R  +V +T
Sbjct: 330 LYQSVKLLYSIGIFFTYALQFYVAAEII----IPAIVSRVPEHFELMVDLCVRTAMVCVT 385

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L +I P  + ++    E +S  PL   + KD  + +
Sbjct: 386 CVLAILIPRLDLVISLVGSVSSSALALIIPPLLEVVTYYGEGIS--PL--TVTKDALISI 441

Query: 279 FGIFIMVSGTVISIMDIFTAIAGD 302
            G    V GT  S+ ++      D
Sbjct: 442 LGFVGFVVGTYESLCELIQPSHSD 465

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 112/204 (54%), Gaps = 12/204 (5%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ M++ +KF  P+ +  +G+ +  +L+   G  GY+++G   +GS+TLN+  +  
Sbjct: 274 VLPLENKMKDSQKF--PL-ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLP-NCW 329

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKLLY+  IFF+Y LQ +V  E++    I   +    E+ +L+V+   R  +V +T
Sbjct: 330 LYQSVKLLYSIGIFFTYALQFYVAAEII----IPAIVSRVPERFELVVDLSARTAMVCVT 385

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+   ++L +I P  + +     E +S  PL   + KD  + +
Sbjct: 386 CVLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGIS--PL--TITKDALISI 441

Query: 279 FGIFIMVSGTVISIMDIFTAIAGD 302
            G    V GT  S+ ++      D
Sbjct: 442 LGFVGFVVGTYESLWELIQPSHSD 465

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 12/190 (6%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           ++ +E+ M+  + F     + ++G+ +   L+      GY+++G   + S++LN+  +  
Sbjct: 282 VLPLENKMKNARHFP---AILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLP-NCW 337

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           + Q VKLLY   I  +Y LQ +VP E++    I   +   S +  L ++   R V+V +T
Sbjct: 338 LYQSVKLLYIAGILCTYALQFYVPAEII----IPFAISRVSTRWALPLDLSIRLVMVCLT 393

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A++IP LDL+ISL G+    +L +I P  + +     E +S  PL   + KD  + +
Sbjct: 394 CLLAILIPRLDLVISLVGSVSGTALALIIPPLLEVTTFYSEGMS--PL--TIFKDALISI 449

Query: 279 FGIFIMVSGT 288
            G    V GT
Sbjct: 450 LGFVGFVVGT 459

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
307204533	467	Proton-coupled amino acid transporter 1	0.645	0.417	0.455	2e-41
383861318	467	PREDICTED: proton-coupled amino acid tra	0.645	0.417	0.44	8e-41
345495708	471	PREDICTED: proton-coupled amino acid tra	0.642	0.411	0.435	4e-40
307189898	481	Proton-coupled amino acid transporter 1	0.635	0.399	0.451	9e-40
332025159	501	Proton-coupled amino acid transporter 4	0.645	0.389	0.42	2e-38
350402512	467	PREDICTED: proton-coupled amino acid tra	0.635	0.411	0.426	4e-38
66513394	466	PREDICTED: proton-coupled amino acid tra	0.635	0.412	0.406	1e-37
380029865	346	PREDICTED: proton-coupled amino acid tra	0.645	0.563	0.415	2e-35
195016889	453	GH14995 [Drosophila grimshawi] gi|193897	0.662	0.441	0.387	2e-35
195377335	474	GJ11930 [Drosophila virilis] gi|19415460	0.662	0.421	0.406	8e-35

>gi|307204533|gb|EFN83213.1| Proton-coupled amino acid transporter 1 [Harpegnathos saltator]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 134/200 (67%), Gaps = 5/200 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+++  +L+   G  GY+KYG+AA GS+T N+ E++I
Sbjct: 271 IIALENNMKTPQYFGGYCGVLNIGMIVIVILYIAMGFFGYLKYGSAAAGSVTFNLPEEEI 330

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF +Y LQ +VP+E+LW  Y+   +       KL  EYV R V+ L T
Sbjct: 331 MAQSIKIMFAIAIFITYALQAYVPVEILWNTYLDHRV----RSGKLFWEYVCRTVVTLAT 386

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L ISLFGA CL++LGI FPA I I VL  +   FGPL +++IK+I LIV
Sbjct: 387 FVLAITIPRLGLFISLFGALCLSALGIAFPAIIEICVLWPDN-DFGPLKFMMIKNILLIV 445

Query: 279 FGIFIMVSGTVISIMDIFTA 298
           FG+  +V GT +SI+DI  +
Sbjct: 446 FGLIGLVVGTYVSIVDIVNS 465

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861318|ref|XP_003706133.1| PREDICTED: proton-coupled amino acid transporter 1-like [Megachile rotundata]

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 134/200 (67%), Gaps = 5/200 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +   L+ + G  GY+KYG  A GS+T N+  D++
Sbjct: 271 IIALENNMKTPQYFGGYCGVLNIGMTVIVALYILMGFFGYVKYGDKAGGSITFNLRSDEV 330

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +++++A  IF ++ LQ +VP+E++W  Y+ Q +    +K+K+  EYV R VI LIT
Sbjct: 331 MAQSIRIMFAIAIFITHALQGYVPVEIIWNTYLDQKI----QKRKIFWEYVCRTVITLIT 386

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ +P L L ISLFGA CL++LGI FPA I I VL  E+  FGP   +L+K+I LIV
Sbjct: 387 FTLAVAVPRLGLFISLFGALCLSALGIAFPAIIEICVLWPER-EFGPCMIMLLKNICLIV 445

Query: 279 FGIFIMVSGTVISIMDIFTA 298
           FG+  +V GT +SI+DI  +
Sbjct: 446 FGLLGLVIGTYVSIVDIVNS 465

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495708|ref|XP_003427558.1| PREDICTED: proton-coupled amino acid transporter 1-like [Nasonia vitripennis]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 130/200 (65%), Gaps = 6/200 (3%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ FR   GV NVG+++  +L+ + G  GY+KYG  A GS+TLN+  D +
Sbjct: 269 IIALENNMKTPQNFRGTFGVLNVGMLVIVVLYILVGFFGYIKYGPDASGSITLNLPMDAV 328

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF +Y LQ +VP+E++W  Y+   +    +K KL  EY+ R ++ L T
Sbjct: 329 MAQSIKVMFAVAIFITYALQAYVPVEIIWTTYLDHRI----KKNKLFWEYIVRTLVTLTT 384

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ +P L L ISLFGA CL++LGI FPA I I VL     +FGP    LIKDI LI+
Sbjct: 385 FILAIAVPRLGLFISLFGALCLSALGIAFPAIIEICVLWPH--NFGPFKVALIKDIGLII 442

Query: 279 FGIFIMVSGTVISIMDIFTA 298
           FG   ++ GT +S+ DI  +
Sbjct: 443 FGCIGLIVGTYVSLGDIIAS 462

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189898|gb|EFN74142.1| Proton-coupled amino acid transporter 1 [Camponotus floridanus]

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 135/197 (68%), Gaps = 5/197 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +  +L+ I G  GY+KYG+ A+GS+T N+ +++I
Sbjct: 285 IIALENNMKTPQNFGGYFGVLNIGMTVIVILYIIIGFFGYVKYGSEAKGSVTFNLPQEEI 344

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           M+Q +K+++A  IF +Y LQ +VP+E++W  Y+   +    + +K++ EYV R  + L T
Sbjct: 345 MSQSIKIMFAIAIFITYALQAYVPVEIIWNTYLNPRI----KNRKILWEYVCRTGVTLAT 400

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L ISLFGA CL++LGI FPA I I VL  EK +FG L  +LIK+I LIV
Sbjct: 401 FVLAIAIPRLGLFISLFGALCLSALGIAFPAIIDICVLWPEK-NFGFLKALLIKNIFLIV 459

Query: 279 FGIFIMVSGTVISIMDI 295
           FG+  +V GT ISI+DI
Sbjct: 460 FGLLGLVVGTYISIVDI 476

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025159|gb|EGI65339.1| Proton-coupled amino acid transporter 4 [Acromyrmex echinatior]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 130/200 (65%), Gaps = 5/200 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +  +L+   G+ GY+KYG+ A+GS+T N+  D+ 
Sbjct: 295 IIALENNMKTPQNFGGYCGVLNIGMTVIVILYIAIGLFGYIKYGSDAKGSVTFNLPSDEA 354

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF +Y LQ +VP+E+LW  Y+   +    +  K++ EY  R  + L+T
Sbjct: 355 MAQSIKIMFAIAIFITYALQAYVPVEILWTTYLDHRI----QNHKILWEYACRTFVTLVT 410

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L ISLFGA CL++LGI FPA I I V   E   FGP   +LIK++ LIV
Sbjct: 411 FILAIAIPRLGLFISLFGALCLSALGIAFPAIIDICVSWPEN-DFGPFKIMLIKNLLLIV 469

Query: 279 FGIFIMVSGTVISIMDIFTA 298
           FG+  +V GT +SI++I  +
Sbjct: 470 FGLLGLVVGTYVSIVEIIKS 489

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402512|ref|XP_003486512.1| PREDICTED: proton-coupled amino acid transporter 1-like isoform 1 [Bombus impatiens] gi|350402515|ref|XP_003486513.1| PREDICTED: proton-coupled amino acid transporter 1-like isoform 2 [Bombus impatiens]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 132/197 (67%), Gaps = 5/197 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +   L+ + G  GY+KYG++A GS+T N+  +++
Sbjct: 271 IIALENNMKTPQYFGGYFGVLNIGMTVIVALYILIGFFGYIKYGSSASGSVTFNLPANEV 330

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF ++ LQ +VP++++W  Y+ Q +    +K+K+  EYV R VI L T
Sbjct: 331 MAQSIKIMFAIAIFITHALQGYVPVDIIWNTYLDQKI----QKRKIFWEYVCRTVITLAT 386

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ +P L L ISLFGA CL++LGI FPA I I VL   +  FGP   + IK+I LIV
Sbjct: 387 FTLAITVPRLALFISLFGALCLSALGIAFPAIIEICVLWPNR-DFGPCMIMFIKNIFLIV 445

Query: 279 FGIFIMVSGTVISIMDI 295
           FG+  +V GT +SI++I
Sbjct: 446 FGLLGLVIGTYVSIVEI 462

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66513394|ref|XP_393138.2| PREDICTED: proton-coupled amino acid transporter 1-like isoform 1 [Apis mellifera]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 132/197 (67%), Gaps = 5/197 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +   L+ + G  GY+KYG+  +GS+T N+  ++I
Sbjct: 271 IIALENNMKTPQYFGGYCGVLNIGMTVIVALYIVMGFFGYIKYGSNVEGSVTFNLPSEEI 330

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF ++ LQ +VP++++W  Y+ Q +    +K+K+  EYV R ++ L T
Sbjct: 331 MAQSIKIMFAIAIFITHALQGYVPVDIIWNTYLDQKI----QKRKIFWEYVCRTILTLST 386

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ +P L L ISLFGA CL++LGI FPA I I VL  ++   GP   +L+K++ LIV
Sbjct: 387 FTLAITVPRLGLFISLFGALCLSALGIAFPAIIEICVLWPDR-DLGPCMIMLVKNLLLIV 445

Query: 279 FGIFIMVSGTVISIMDI 295
           FG+  +V GT +S++DI
Sbjct: 446 FGLLGLVIGTYVSMVDI 462

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029865|ref|XP_003698585.1| PREDICTED: proton-coupled amino acid transporter 1-like [Apis florea]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 135/200 (67%), Gaps = 5/200 (2%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ +E++M+ P+ F    GV N+G+ +   L+ I G  GY+KYG++A+GS+T N+  ++I
Sbjct: 150 IIALENNMKTPQYFGGYCGVLNIGMTVIVALYIIMGFFGYIKYGSSAEGSVTFNLPSEEI 209

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           MAQ +K+++A  IF ++ LQ +VP++++W  Y+ Q +    +K+K+  EYV R +I L T
Sbjct: 210 MAQSIKIMFAIAIFITHALQGYVPVDIIWNTYLDQKI----QKRKIFWEYVCRTIITLST 265

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L ISLFGA CL++LGI FPA I I VL  ++   GP   +L+K++ LI+
Sbjct: 266 FTLAITIPRLGLFISLFGALCLSALGIAFPAIIEICVLWPDR-DLGPCMIMLVKNLLLII 324

Query: 279 FGIFIMVSGTVISIMDIFTA 298
           FG+  +V GT +S++DI  +
Sbjct: 325 FGLLGLVIGTYVSMVDIIKS 344

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195016889|ref|XP_001984495.1| GH14995 [Drosophila grimshawi] gi|193897977|gb|EDV96843.1| GH14995 [Drosophila grimshawi]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 129/204 (63%), Gaps = 4/204 (1%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ IE +M  P+ + QP G+ N+G+ +   L+ + G  GY KYG  A GS+TLNI ++++
Sbjct: 252 ILAIEENMATPRAYVQPCGIMNIGMGIVMSLYLLLGFFGYWKYGDEALGSVTLNIPQEKV 311

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
            AQ+ K+ +A   + SY LQ +V   ++W  Y+ + +   + K   + E +FR +IVL+T
Sbjct: 312 AAQVAKIFFAITTYISYALQGYVTAHIVWGQYLSKRIE--NVKMHTLYELIFRALIVLLT 369

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L +SL G+FCL+ LG+IFPA +HI V+  E   +GP  + L+ ++ L++
Sbjct: 370 FGCAIAIPDLSLFLSLVGSFCLSILGLIFPALLHICVIYEE--GYGPYRYRLVFNLLLLI 427

Query: 279 FGIFIMVSGTVISIMDIFTAIAGD 302
           FG+F    GT +SI+DI  A++G 
Sbjct: 428 FGVFGGAVGTYVSIVDIVNAMSGK 451

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377335|ref|XP_002047446.1| GJ11930 [Drosophila virilis] gi|194154604|gb|EDW69788.1| GJ11930 [Drosophila virilis]

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 127/204 (62%), Gaps = 4/204 (1%)

Query: 99  IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
           I+ IE +M  P+ + QP G+ N G+ +   L+   G  GY KYG  A+GS+TLNI + +I
Sbjct: 273 ILAIEENMATPRAYVQPCGIMNWGMSIVLSLYVFLGFFGYWKYGAEAKGSVTLNIPQTEI 332

Query: 159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
           +AQ+VK+ +A   + SY LQ +V   +LW  Y+ + +   + KK    E  FR +IVL+T
Sbjct: 333 LAQVVKIFFAITTYISYALQGYVTAHILWTKYLSKRI--ENTKKHAFYELCFRALIVLLT 390

Query: 219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
           +  A+ IP L L +SL G+FCL+ LG+IFPA + I V    +  +GP G+ L+ ++ L++
Sbjct: 391 FGCAIAIPDLSLFLSLVGSFCLSVLGLIFPALLQICV--QYETGYGPAGYRLLVNLLLLL 448

Query: 279 FGIFIMVSGTVISIMDIFTAIAGD 302
           FGIF  V GT +SI+DI  + +G 
Sbjct: 449 FGIFGGVVGTYVSIVDIIKSFSGQ 472

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.874	0.585	0.330	3.9e-37
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.642	0.417	0.370	1.5e-33
FB|FBgn0030816	468	CG16700 [Drosophila melanogast	0.632	0.408	0.385	9.8e-32
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.652	0.394	0.343	4.3e-30
FB|FBgn0052079	457	CG32079 [Drosophila melanogast	0.639	0.422	0.318	1.6e-29
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.635	0.380	0.345	3.2e-28
FB|FBgn0052081	471	CG32081 [Drosophila melanogast	0.910	0.583	0.276	1.2e-27
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.655	0.417	0.352	1.3e-27
WB|WBGene00020837	449	T27A1.5 [Caenorhabditis elegan	0.708	0.476	0.328	1.3e-27
FB|FBgn0033572	460	CG12943 [Drosophila melanogast	0.625	0.410	0.329	3.7e-27

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 92/278 (33%), Positives = 156/278 (56%)

Query:    20 LLISLFGAFCLASLGIIFP--ATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSG 77
             +++ L   + + +L ++ P  +  ++L+L    +GFG + + +F+++  ++     + +G
Sbjct:   181 IIVPLLLIYSIKNLKLLAPFSSAANLLLL----VGFGIILYYIFEELPPLSERDPFVAAG 236

Query:    78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCG 137
                 L   F  +         I+ IE +M  PK F  P G+ N G+ +   L+ + G  G
Sbjct:   237 ---KLPTFFGTVLFALEAVGVILAIEENMATPKSFVGPCGILNSGMSIVLGLYVLLGFFG 293

Query:   138 YMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVE 197
             Y KYG  ++GS+TLNI + +I AQ+VK+ +A   + SY LQ +V   +LW  Y+ +    
Sbjct:   294 YWKYGNESEGSITLNIPQSEIPAQVVKVFFAITTWISYALQGYVTAHILWDKYLAKR--- 350

Query:   198 YSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLR 257
             + E ++   E +FR +IVL+T+  A+ IP L + +SL G+FCL+ LG+IFP  + I V  
Sbjct:   351 FKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFCLSILGLIFPVLLQICVQY 410

Query:   258 HEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDI 295
              E   +GP    LI ++ L+ FGIF  V GT +SI+DI
Sbjct:   411 TE--GYGPFRIKLIINLLLLCFGIFGGVVGTYVSILDI 446

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 73/197 (37%), Positives = 122/197 (61%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             I+ +E+ M+ P+KF    GV NV +VL   L+   G+ GY+ YG+A  GS+TLN+ E ++
Sbjct:   266 ILPLENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEV 325

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             ++  VK + AF I+ ++ L  +V +++ W +Y+ + +   +++  L  EY  R  +VLIT
Sbjct:   326 LSMCVKGMLAFAIYITHGLACYVAIDITWNDYVAKRLG--AQRNALFWEYAVRTGLVLIT 383

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
             +  A+ IP+L+L ISLFGA CL++LG+ FPA I I    +    F  + W+++ +  LI+
Sbjct:   384 FLLAVAIPNLELFISLFGALCLSALGLAFPALIQICTHWYNTKGFAKV-WLVLSNFVLII 442

Query:   279 FGIFIMVSGTVISIMDI 295
              GI  +V GT  S+ +I
Sbjct:   443 VGILGLVIGTYTSLKEI 459

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 76/197 (38%), Positives = 121/197 (61%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             ++ +++ MR+P +F +P+GV NVG+ L +++F   G  GYMK+G    GS+TLN+  D I
Sbjct:   268 VMPLKNAMRKPHQFERPLGVLNVGMFLVSVMFMFAGSVGYMKWGEQVGGSLTLNLG-DTI 326

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             +AQ VKL+ +  +   YPLQ FV ++++W N  KQ M    E + L+ E  FR  +VL+T
Sbjct:   327 LAQAVKLMVSAGVLLGYPLQFFVAIQIMWPN-AKQ-MCGI-EGRSLLGELGFRTFMVLVT 383

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
              A A ++P L L ISL GA C  +L ++FP  I  L+ R E ++ GP  WI +K++ ++V
Sbjct:   384 LAIAEMVPALGLFISLIGALCSTALALVFPPVIE-LISRSE-LNKGPGIWICVKNLVILV 441

Query:   279 FGIFIMVSGTVISIMDI 295
               +    +G+  S+  I
Sbjct:   442 LALLGFFTGSYESLKQI 458

GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
 Identities = 70/204 (34%), Positives = 118/204 (57%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             ++ +E++M+ P+ F    GV + G+    L++ + G  GY++YG+A   S+TLN+  ++ 
Sbjct:   299 VMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEEW 358

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
              AQ VK+L +  ++ ++ LQ FV LE++W + IK    E  +K+  +V YV R V+V   
Sbjct:   359 PAQTVKVLISLAVYCTFGLQFFVCLEIIW-DGIK----EKCKKRPTLVNYVLRTVLVTAA 413

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
                A+ +P +   + L GAFC + LG+IFP  I ++V  H +  FG   WIL K+  + +
Sbjct:   414 VVLAVAVPTIGPFMGLIGAFCFSILGLIFPVVIELIV--HWESGFGKYNWILWKNAIITL 471

Query:   279 FGIFIMVSGTVISIMDIFTAIAGD 302
              GI  +V GT  +I DI  A + +
Sbjct:   472 CGIGALVFGTQAAIKDIVKAYSNN 495

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0052079 CG32079 [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 63/198 (31%), Positives = 112/198 (56%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             I+ +   MR+P+      GV N G+++    +A+ G  GY +YG     S+  N+ ++ I
Sbjct:   257 ILSLGRSMRKPESLMGTCGVLNQGMIVVISFYAVFGFFGYWRYGENTSNSILQNMPQNDI 316

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             + ++   ++A  IFFSY LQ +V ++++W NY++    E  ++    VE + R  +V+ +
Sbjct:   317 LPKLATGIFALAIFFSYALQGYVTVDIIWRNYLEP---ELEDRYLRTVECLLRIALVIAS 373

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
                A+  P   LL+SL G+FCLA LG+I P  + I  LR+E+  +GP    LI+ +  I 
Sbjct:   374 VLVAIQYPDFGLLLSLVGSFCLAQLGLILPGIVDIC-LRYEE-DYGPGKIFLIRSMLFIC 431

Query:   279 FGIFIMVSGTVISIMDIF 296
              G+   V+GTV+++  ++
Sbjct:   432 MGLAGGVAGTVVTLQTLY 449

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 68/197 (34%), Positives = 114/197 (57%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             ++ +E++MR P+ F    GV N G+V+ A L+   G  GY+KYG   +GS+TLN+ +   
Sbjct:   307 VLPLENNMRTPEDFGGTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDT 366

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             ++Q+V++  A  IF SY LQ +VP+ ++   +++ H  + +  K L    V R V+V  T
Sbjct:   367 LSQLVRISMAVAIFLSYTLQFYVPVNIV-EPFVRSHF-DTTRAKDLSAT-VLRVVLVTFT 423

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
             +  A  IP+L  +ISL GA   ++L +I P  I ++   +  V +G   W+L KD+ +++
Sbjct:   424 FLLATCIPNLGSIISLVGAVSSSALALIAPPIIEVITFYN--VGYGRFNWMLWKDVLILI 481

Query:   279 FGIFIMVSGTVISIMDI 295
             FG+   V GT  S+  I
Sbjct:   482 FGLCGFVFGTWASLAQI 498

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0052081 CG32081 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 78/282 (27%), Positives = 140/282 (49%)

Query:    20 LLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTV 79
             + + L   F +  L  + P  I   +L +   GF  + + LF D+  I     +   G +
Sbjct:   157 IALCLIPPFQIRKLKYLVPFNILASILIYT--GFSLMMYYLFVDLPPITERNILF--GRI 212

Query:    80 ISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYM 139
               +   F            ++ +E  M +P+ +    G+ +  I+L  + +   G+ GY 
Sbjct:   213 DKIPLFFGIALFSITSVGVMLAVEATMAKPRHYLGWFGILDRAILLVIISYVTFGLMGYW 272

Query:   140 KYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYS 199
             +YG    GS++LNI  D++++Q+ K   A  IF +YPL  FV ++++ MN+      +  
Sbjct:   273 RYGDETAGSISLNIPTDEVLSQVAKGFIAAAIFLTYPLAGFVIIDII-MNHFWNKNGDLP 331

Query:   200 EKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259
                  + E + R   V++    A++ P+L  L+SL GA  ++ L ++FPA I I +    
Sbjct:   332 NAA--LKESILRACTVVLICITAIIAPNLGPLLSLVGALTISLLNLVFPALIEICLYYPP 389

Query:   260 KVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAG 301
             + ++G L W+L+KDI  ++ GI I+V GTV SI D+ +   G
Sbjct:   390 EYNYGKLKWVLVKDIFYVIVGILILVQGTVFSIKDMISEWGG 431

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 72/204 (35%), Positives = 115/204 (56%)

Query:    99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
             ++ +E+ MR+P+ F    GV N+ +V    L+AI G  GY+++G   +GS+TLN+ E   
Sbjct:   276 VMPVENSMRKPQHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPEGAW 335

Query:   159 MAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLIT 218
             +    KLL A  I F++ LQ +VP E+LW      H  ++S +K  I + + R  I+L++
Sbjct:   336 LGDTAKLLMAVAILFTFGLQFYVPNEILWRKI--SH--KFSPEKHNITQILLRSGIILLS 391

Query:   219 WAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIV 278
                A  IP+L+  ISL GA   + LGI  P+ +  + L  +++  G   W L+K+I L V
Sbjct:   392 GGVAAAIPNLEPFISLVGAVFFSLLGIFVPSFVETVYLWPDRL--GVCKWKLVKNIFLGV 449

Query:   279 FGIFIMVSGTVISIMDIFTAIAGD 302
             F I  +V+G V SI +I    + D
Sbjct:   450 FSILALVAGAVASINEIIEMYSDD 473

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

WB|WBGene00020837 T27A1.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 291 (107.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 73/222 (32%), Positives = 119/222 (53%)

Query:    77 GTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMC 136
             G V +L   F  +   F     ++ IE+ M EP  F  P GV N   +L  L++   G  
Sbjct:   230 GAVENLPLFFGTVMFAFEGVAVVLPIENQMNEPIHFITPNGVLNTSCILVLLVYMTVGFF 289

Query:   137 GYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMV 196
             G+++YG   + ++TLN+ +     Q +K+++   I  SYPLQ +VP+E +   +IK+ +V
Sbjct:   290 GFLRYGNDIKDTLTLNLPQTPFY-QAIKVMFVLCILVSYPLQFYVPMERV-EKWIKRKVV 347

Query:   197 EYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVL 256
             E ++++ +I  Y  R   VL+T A A +IPHL L ISL G+    SL ++FP  I +L  
Sbjct:   348 E-AKQEPMI--YAIRFGGVLLTCAMAQLIPHLALFISLVGSVAGTSLTLVFPPLIELLC- 403

Query:   257 RHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTA 298
              + K       W+ I++I L+ F +    +GT  S++ I  A
Sbjct:   404 SYSKQELTK--WVWIRNIGLMAFAMVGFTTGTYASMVQIIEA 443

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033572 CG12943 [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 3.7e-27, P = 3.7e-27
 Identities = 64/194 (32%), Positives = 111/194 (57%)

Query:   102 IEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQ 161
             +E HM  P+ +    GV N+ ++   L     G+ GY ++G     S+TLNI +D+I++Q
Sbjct:   261 VEAHMAHPQSYLGLFGVLNLAVLFILLSNMFFGIIGYWRFGDNVHASITLNIPQDEILSQ 320

Query:   162 IVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAF 221
              +K+  A  IF SYPL  FV + +++ +Y      E   + + ++EYV R + + +T A 
Sbjct:   321 FIKVFIASGIFLSYPLNGFVVITVMFSDYENS---EPRGRYRTLIEYVVRLLFLFLTGAV 377

Query:   222 ALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGI 281
             A+ +P+L  L  L GAF L++L ++ PA I + +  +  V +G L W LI+DI LI+ G+
Sbjct:   378 AIGVPNLAALTELEGAFSLSNLNLLCPALIDVFL--NYNVGYGRLMWKLIRDILLILIGL 435

Query:   282 FIMVSGTVISIMDI 295
                + G  +++M +
Sbjct:   436 IFGIVGCTVALMQL 449

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0005615 "extracellular space" evidence=IDA

GO:0032504 "multicellular organism reproduction" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-24
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-04
PTZ00206	467	PTZ00206, PTZ00206, amino acid transporter; Provis	0.001

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  100 bits (250), Expect = 6e-24
 Identities = 53/192 (27%), Positives = 93/192 (48%)

Query: 102 IEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQ 161
           I++ M+ P KF+    V    I++  +L+ + G+ GY+ +G   +G++ LN+ +   +  
Sbjct: 215 IQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLID 274

Query: 162 IVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAF 221
           I  LL    +  SYPLQ F   +++     ++        K  ++  V R  +V+IT+  
Sbjct: 275 IANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLI 334

Query: 222 ALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGI 281
           A+ +P L   +SL GA   A L  I P   H+ + + +K S   L    I D+  IV G+
Sbjct: 335 AISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGL 394

Query: 282 FIMVSGTVISIM 293
            +M  G    I+
Sbjct: 395 LLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 31/72 (43%)

Query: 12  ALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGL 71
           A+ +P L   +SL GA   A L  I P   H+ + + ++     L      D+  I  GL
Sbjct: 335 AISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGL 394

Query: 72  FVMVSGTVISLM 83
            +M  G    ++
Sbjct: 395 LLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 98  QIVKIEHHM----REPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLN- 152
           QI   E +M    R   KF   +    + + +   ++ +T   GYM +G    GS+ L  
Sbjct: 272 QITAYEVYMDMTNRSVGKF---VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMY 328

Query: 153 --IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKK----KLIV 206
             + E  IM   V +L    +F SY L        L+       ++ +  +K    K  +
Sbjct: 329 DPVNEPAIMVGFVGVLVK--LFVSYALLGMACRNALY------DVIGWDARKVAFWKHCI 380

Query: 207 EYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPL 266
             V   V++L+     L IP ++ ++   G+     LG I PA + +          GP 
Sbjct: 381 AVVTLSVVMLLC---GLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPF 437

Query: 267 GWILIKDIALIVFGIFIMVSGTVISIMDIFT 297
            +  I    +++ G+  +V GT  +I  +  
Sbjct: 438 YY--ISTYVVLITGVIAIVFGTGATIWGVTV 466

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG1304|consensus	449		100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303|consensus	437		99.97
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.96
KOG4303|consensus	524		99.93
KOG1305|consensus	411		99.92
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.27
KOG1304|consensus	449		99.13
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.52
PLN03074	473	auxin influx permease; Provisional	98.38
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.98
PRK10483	414	tryptophan permease; Provisional	97.73
PRK15132	403	tyrosine transporter TyrP; Provisional	97.67
PTZ00206	467	amino acid transporter; Provisional	97.64
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.4
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.33
PRK09664	415	tryptophan permease TnaB; Provisional	97.33
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.23
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.0
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	96.97
PRK10655	438	potE putrescine transporter; Provisional	96.96
PRK10249	458	phenylalanine transporter; Provisional	96.95
PRK10746	461	putative transport protein YifK; Provisional	96.82
PRK11021	410	putative transporter; Provisional	96.62
PRK10238	456	aromatic amino acid transporter; Provisional	96.59
TIGR00909	429	2A0306 amino acid transporter.	96.53
PRK15049	499	L-asparagine permease; Provisional	96.48
PRK10644	445	arginine:agmatin antiporter; Provisional	96.46
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	96.45
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.42
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.33
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.13
PRK11387	471	S-methylmethionine transporter; Provisional	96.12
PRK11357	445	frlA putative fructoselysine transporter; Provisio	96.07
KOG1287|consensus	479		95.82
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	95.81
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	95.75
PRK10580	457	proY putative proline-specific permease; Provision	95.74
TIGR00906	557	2A0303 cationic amino acid transport permease.	95.71
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	95.66
TIGR00913	478	2A0310 amino acid permease (yeast).	95.61
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	95.53
PRK10836	489	lysine transporter; Provisional	95.23
PRK15238	496	inner membrane transporter YjeM; Provisional	94.99
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	94.89
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	94.54
TIGR00911	501	2A0308 L-type amino acid transporter.	94.33
TIGR00930	953	2a30 K-Cl cotransporter.	93.75
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	93.73
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	89.08
KOG4303|consensus	524		87.21
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	85.06
TIGR00912	359	2A0309 spore germination protein (amino acid perme	83.69
KOG1303|consensus	437		83.17

>KOG1304|consensus

Probab=100.00  E-value=2.4e-42  Score=316.92  Aligned_cols=210  Identities=39%  Similarity=0.730  Sum_probs=198.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc
Q psy14213         69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS  148 (302)
Q Consensus        69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~  148 (302)
                      ++.+++++||..+++|++          ++++|+||+||||++|+.+.++++.+|.+++++|+.+|++||++|||+++++
T Consensus       240 ~~~~~lf~GtaifafEGi----------g~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s  309 (449)
T KOG1304|consen  240 WSGLPLFFGTAIFAFEGI----------GMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS  309 (449)
T ss_pred             hhhhHHHHHHHHHHhccc----------eEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce
Confidence            678999999999999999          9999999999999999988889999999999999999999999999999999


Q ss_pred             hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCch
Q psy14213        149 MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHL  228 (302)
Q Consensus       149 il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~  228 (302)
                      |++|+|+ +++.+.+|+++++++++|||||++|+.|++|+. +++|..+   ++++|..+.+|..+++++..+|.++||+
T Consensus       310 ITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-i~~k~~~---~~~~~~~~~~R~~lVllt~~iA~~iPnL  384 (449)
T KOG1304|consen  310 ITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-IRKKFSE---NRKKLLEYALRVFLVLLTFLIAVAVPNL  384 (449)
T ss_pred             EEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-HHHhcCc---chhHHHHHHHHHHHHHHHHHHHHHCCcH
Confidence            9999996 999999999999999999999999999999998 8877742   4578899999999999999999999999


Q ss_pred             hHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        229 DLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDI  295 (302)
Q Consensus       229 ~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~i  295 (302)
                      +.+++|+||++++.+++++|+++|++.++++.  .+..+|+.+.|.+++++|+++++.|||++++++
T Consensus       385 ~~fisLVGs~~~s~L~li~P~liel~~~~~~~--~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  385 ALFISLVGSVSCSLLALIFPPLIELITFYPEG--KGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HhhHHHHHHHHHHHHHHHccHHHHHHHhcccc--cCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999875  256679999999999999999999999999874

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=3.2e-32  Score=258.35  Aligned_cols=207  Identities=15%  Similarity=0.214  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCcccc--chhcc
Q psy14213         75 VSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQG--SMTLN  152 (302)
Q Consensus        75 ~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~--~il~n  152 (302)
                      .+++..+++++|          +++||+|+|||||++|++   +...++..+...|..+|+.||+.|||++++  +.+.|
T Consensus       238 ~~~~i~faf~g~----------~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~  304 (473)
T PLN03074        238 GATNILYTFGGH----------AVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSL  304 (473)
T ss_pred             HHHHHHHHhccc----------ccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhc
Confidence            344577888888          999999999999999998   888999999999999999999999999764  45667


Q ss_pred             cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHH
Q psy14213        153 IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLI  232 (302)
Q Consensus       153 ~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~  232 (302)
                      +|+ +.+.+++++++.++++.+||+++.|..+..|+. .+.+     +++..+.|.++|+.+++.++++|..+|+|++++
T Consensus       305 lp~-~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~-~~~~-----~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~ll  377 (473)
T PLN03074        305 LPR-SGWRDAAVILMLIHQFITFGFACTPLYFVWEKA-IGVH-----DTKSICLRALARLPVVVPIWFLAIIFPFFGPIN  377 (473)
T ss_pred             CCC-chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hccc-----ccccHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            884 456789999999999999999999998888776 4432     134567889999999999999999999999999


Q ss_pred             HHhhhHHhhhHHHHhhHHHHHHHhcccccc----------CCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q psy14213        233 SLFGAFCLASLGIIFPAAIHILVLRHEKVS----------FGPLGWILIKDIALIVF-GIFIMVSGTVISIMDIFTAIAG  301 (302)
Q Consensus       233 ~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~----------~~~~~~~~~~~~~ii~~-G~~~~v~Gt~~si~~ii~~~~~  301 (302)
                      +|+||++++++++++|+++|++.++++.++          .+..+|..++|++++++ |+++.+.|+|.+++++++++++
T Consensus       378 sLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        378 SAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence            999999999999999999999977654211          11223457999999986 6666799999999999999875

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=7.8e-33  Score=263.23  Aligned_cols=207  Identities=16%  Similarity=0.211  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhc
Q psy14213         72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTL  151 (302)
Q Consensus        72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~  151 (302)
                      ....+|+..++|++|          .+.+|+|+|||||+. +++.+++..++.++.++|..+|++||++|||+++++++.
T Consensus       258 ~~~algi~~faF~~h----------~~~~~i~~~M~~~t~-~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Ill  326 (467)
T PTZ00206        258 AIEGLGVFIFAYVFQ----------ITAYEVYMDMTNRSV-GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL  326 (467)
T ss_pred             HHhhhhHHHhhhhhh----------hhhHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHH
Confidence            445566666666666          999999999998653 333338999999999999999999999999999999999


Q ss_pred             cc-ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhH
Q psy14213        152 NI-AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDL  230 (302)
Q Consensus       152 n~-p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~  230 (302)
                      |+ |.+++...++++++.++++++||++.+|+|+.+++. +.++.    ++.+.|+|...+..+++.++++|+++|+++.
T Consensus       327 n~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~-~~~~~----~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~  401 (467)
T PTZ00206        327 MYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDV-IGWDA----RKVAFWKHCIAVVTLSVVMLLCGLFIPKINT  401 (467)
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH-hCCCc----ccCchhhHHHHHHHHHHHHHHHHhccCCHHH
Confidence            99 566788899999999999999999999999999887 54332    1334567777777888889999999999999


Q ss_pred             HHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        231 LISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIF  296 (302)
Q Consensus       231 v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii  296 (302)
                      +++|+||++++.++|++|+++|++....+.+  +..+++...+++++++|+++.+.|||+++++.+
T Consensus       402 vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~--~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        402 VLGFAGSISGGLLGFILPALLFMYSGGFTWQ--KVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCCccHH--hhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999999999999984211111  122345689999999999999999999999875

>KOG1303|consensus

Probab=99.97  E-value=6.2e-30  Score=238.28  Aligned_cols=204  Identities=20%  Similarity=0.418  Sum_probs=172.8

Q ss_pred             HhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHH
Q psy14213         84 DIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIV  163 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~  163 (302)
                      .+...+.++|.+|+++||||++||+|++|+|   ++..++.+++.+|..+++.||++|||+++|+++.|++++.++...+
T Consensus       232 ~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~a  308 (437)
T KOG1303|consen  232 TALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALA  308 (437)
T ss_pred             hhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHH
Confidence            3444444555555999999999999999988   9999999999999999999999999999999999996457999999


Q ss_pred             HHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhH
Q psy14213        164 KLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASL  243 (302)
Q Consensus       164 ~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l  243 (302)
                      ++++.+|++.+|+....|..+.+|+. .+.+.++. .++..+.|.+.|+.+++.++++|+.+|+|+++++++||+...++
T Consensus       309 ni~i~~h~i~s~~i~a~pl~~~~E~~-~~~~~~~~-~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~  386 (437)
T KOG1303|consen  309 NILIVLHLIGSYQIYAQPLFDVVEKL-IGVKHPDF-KKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPL  386 (437)
T ss_pred             HHHHHHHHhhhhhhhhcchHHHHHHH-hccCCccc-cccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHH
Confidence            99999999999999999999999998 55433111 11345789999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHhccccccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy14213        244 GIIFPAAIHILVLRHEKVSFGPLGWILIKDIAL-IVFGIFIMVSGTVISIMDIFT  297 (302)
Q Consensus       244 ~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~i-i~~G~~~~v~Gt~~si~~ii~  297 (302)
                      ++++|+++|++.++.++  .+ .+|  ..++.+ +++|++.++....+++++++.
T Consensus       387 t~ilP~~~yl~~~k~~~--~s-~~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  387 TFILPCLMYLLIKKPKR--FS-PKW--LLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHHHHHHHHhhhhhh--hh-HHH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999977654  22 233  555566 788888888888888888764

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.96  E-value=6.2e-31  Score=246.65  Aligned_cols=213  Identities=26%  Similarity=0.510  Sum_probs=182.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc
Q psy14213         69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS  148 (302)
Q Consensus        69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~  148 (302)
                      +......+|+..+++.+|          +++||+++|||||++++|++++...++.+++++|..+|.+||++|||+++++
T Consensus       191 ~~~~~~~~~i~~faf~~~----------~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~  260 (409)
T PF01490_consen  191 FSGFFSAFGIIIFAFSCH----------PNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGN  260 (409)
T ss_pred             hhHHHHhhhhhhhhhhcc----------cccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecch
Confidence            346677778888888888          9999999999999998866669999999999999999999999999999999


Q ss_pred             hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14213        149 MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFAL  223 (302)
Q Consensus       149 il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~  223 (302)
                      +++|+|++++...++++++.++++.+||++.+|.++.+++. +.++     .....++.++++|..+|+.++..+.++|+
T Consensus       261 il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~  339 (409)
T PF01490_consen  261 ILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL-LFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAI  339 (409)
T ss_pred             hhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh-eeccccccccccccccccceeeeeeecchhhhhhhhhh
Confidence            99999977789999999999999999999999999999998 5432     00000134568899999999999999999


Q ss_pred             hcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        224 VIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISI  292 (302)
Q Consensus       224 ~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si  292 (302)
                      .+||++++++++||++++.++|++|+++|++.+++++++.++...+...++.++++|++.++.|+|+++
T Consensus       340 ~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  340 FVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            999999999999999999999999999999998876521111111236688999999999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303|consensus

Probab=99.93  E-value=1.9e-27  Score=208.12  Aligned_cols=202  Identities=24%  Similarity=0.409  Sum_probs=177.6

Q ss_pred             hccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHHHHHHHH
Q psy14213         90 QEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAF  169 (302)
Q Consensus        90 ~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~~~~~~l  169 (302)
                      .+.|++|...|+++.+|++|++|.-   .+.++-+...++-..+|..||++|||.+++.|++|+| +.....++++++.+
T Consensus       312 VFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~  387 (524)
T KOG4303|consen  312 VFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVV  387 (524)
T ss_pred             EEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHH
Confidence            4567778999999999999999988   8999999999999999999999999999999999999 46778899999999


Q ss_pred             HHHHhhhcchhcHHHHHHHhhhhhcccc------ccc-cchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhh
Q psy14213        170 VIFFSYPLQNFVPLELLWMNYIKQHMVE------YSE-KKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLAS  242 (302)
Q Consensus       170 ~~~~sypL~~~p~~~~l~~~~~~~~~~~------~~~-~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~  242 (302)
                      ..++||||-++.+.+.+|+. +....++      +++ +.-+-+...+|.++++.+.+.|+.+|+|..+++|+|++.++.
T Consensus       388 KALLSYPLPfyAAvelLe~n-lF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtm  466 (524)
T KOG4303|consen  388 KALLSYPLPFYAAVELLENN-LFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTM  466 (524)
T ss_pred             HHHHcCCchHHHHHHHHHHh-hhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhccccccc
Confidence            99999999999999999998 3322211      112 122344578999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213        243 LGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAG  301 (302)
Q Consensus       243 l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~~~~~  301 (302)
                      ++|+.|++||+++.++.     ....++.++..++++|...++.|.|.+..++++.++.
T Consensus       467 LsFiwP~lFHl~ik~~~-----L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  467 LSFIWPALFHLYIKEKT-----LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             HHHHHHHHHHHHHHHHh-----hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            99999999999999874     2245789999999999999999999999999998875

>KOG1305|consensus

Probab=99.92  E-value=8.7e-25  Score=202.81  Aligned_cols=208  Identities=18%  Similarity=0.335  Sum_probs=178.8

Q ss_pred             HHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchH-
Q psy14213         81 SLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIM-  159 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~-  159 (302)
                      ..+.....+.++|.||.+..++++|||||++ ++++++...+...+.++|..+|.+||+.|||++.+|++.++|+++.. 
T Consensus       195 ~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~  273 (411)
T KOG1305|consen  195 SLFYALPIFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNL  273 (411)
T ss_pred             hhhhhhhhhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchh
Confidence            3456677778888888999999999999986 55555999999999999999999999999999999999999865433 


Q ss_pred             -----HHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHH
Q psy14213        160 -----AQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISL  234 (302)
Q Consensus       160 -----~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~l  234 (302)
                           ...++..+.++.+.++|++.+|.|+.+++. +.++.+++ ...++.+|.+++..+...+.+.|+.+|++++++++
T Consensus       274 l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~-~~~~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~  351 (411)
T KOG1305|consen  274 LRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDEL-LFPYQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGF  351 (411)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHH-hcccCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence                 479999999999999999999999998887 43333211 12456778999999999999999999999999999


Q ss_pred             hhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        235 FGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTA  298 (302)
Q Consensus       235 vGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~~  298 (302)
                      +||+++..++|++|+++|++..|+ +      .+++...+....+|+...+.|+...+.++..+
T Consensus       352 vGAT~~~~i~FI~P~~~yl~~~~~-~------~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  352 VGATSSTSISFILPALYYLKASKK-K------SREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             hhhhhhhhhHHHHHHHhhheeecc-c------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998875 2      24567888999999999999999999998765

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.27  E-value=4.2e-11  Score=112.58  Aligned_cols=198  Identities=18%  Similarity=0.220  Sum_probs=139.1

Q ss_pred             HhhhhhhccCCCceEEEeecccccCccc--cccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHH
Q psy14213         84 DIFTAIQEDFHPKTQIVKIEHHMREPKK--FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQ  161 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~i~~~M~~p~~--~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~  161 (302)
                      ..+..+.++|++|++++++++||+|+++  .+|   +...+..+..++|..+++++|..+|+.+.++++.+.++ +....
T Consensus       197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~-~~~~l  272 (415)
T COG0814         197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ-NISLL  272 (415)
T ss_pred             HHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc-hHHHH
Confidence            3445555666666999999999998865  566   99999999999999999999999999999999999985 44444


Q ss_pred             HHHHHHHHHHHHhhhcchhcHHHHHHHh---h----------hhhccccccccchhhh--hhhhHHHHHHHHHHHHHhcC
Q psy14213        162 IVKLLYAFVIFFSYPLQNFVPLELLWMN---Y----------IKQHMVEYSEKKKLIV--EYVFREVIVLITWAFALVIP  226 (302)
Q Consensus       162 ~~~~~~~l~~~~sypL~~~p~~~~l~~~---~----------~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~iA~~iP  226 (302)
                      .++.....+...+++.+.++.+...-..   .          .++ .++..+++..+.  ...............+...|
T Consensus       273 ~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~  351 (415)
T COG0814         273 SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK-SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALG  351 (415)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh-ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence            4444555555577777777777553221   0          111 000001122232  33445555666677888899


Q ss_pred             chhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        227 HLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVIS  291 (302)
Q Consensus       227 ~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~s  291 (302)
                      ..+.+++-+|+.....+.++.|...+.+....+.  .+   .++..+++++++|+..++.-.++.
T Consensus       352 ~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~--~~---g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         352 YAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV--YG---GNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee--cC---CCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988877654432  11   112467888888988877765544

>KOG1304|consensus

Probab=99.13  E-value=4.4e-11  Score=110.98  Aligned_cols=76  Identities=37%  Similarity=0.635  Sum_probs=68.6

Q ss_pred             chhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeeeeeccchhhhhhHHHHHHHHHHHHHH
Q psy14213          7 YRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMD   84 (302)
Q Consensus         7 ~~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~~~k~i~~~~~~~~~~~~Gt~~~~~~   84 (302)
                      .|+++|.++|||++||||+||+|++.|++++|+++|..+.+.+..  +..+|.++||+....+|.++..+||+.+..|
T Consensus       373 lt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~--~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~  448 (449)
T KOG1304|consen  373 LTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK--GRFMWKLIKNIVLIVFGVFGFVYGTYTSIKE  448 (449)
T ss_pred             HHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc--CceehHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            378999999999999999999999999999999999998777643  6777888999988889999999999988765

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.52  E-value=6.7e-07  Score=83.38  Aligned_cols=156  Identities=14%  Similarity=0.133  Sum_probs=108.8

Q ss_pred             cCCCceEEEeecccccCc-cccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc-------------hhcccccCc
Q psy14213         92 DFHPKTQIVKIEHHMREP-KKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS-------------MTLNIAEDQ  157 (302)
Q Consensus        92 ~~~~~~~~~~i~~~M~~p-~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~-------------il~n~p~~~  157 (302)
                      .|+.|++++++.++++|| |+.+|   +...+..+++++|...........+.+.-.+             ...+.-.+.
T Consensus       190 ~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~  266 (381)
T TIGR00837       190 SFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSS  266 (381)
T ss_pred             HHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccch
Confidence            345557899999999744 56566   9999999999999988665554443221111             111111123


Q ss_pred             hHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchh-HHHHHhh
Q psy14213        158 IMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLD-LLISLFG  236 (302)
Q Consensus       158 ~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~-~v~~lvG  236 (302)
                      +...+...+-.+++..|+.-.....+|.+.+. ++++.    ++++   |.....+..+...++|.+.|+.. ..++..|
T Consensus       267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-~~~~~----~~~~---~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G  338 (381)
T TIGR00837       267 AIELALELFSNFALASSFLGVTLGLFDYLADL-FKFDD----SKKG---RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG  338 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc----ccCC---CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH
Confidence            45567777777788888888777888887666 54422    1112   34455666678889999999987 9999999


Q ss_pred             hHHhhhHHHHhhHHHHHHHhccc
Q psy14213        237 AFCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       237 s~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                       +.++.+.+++|++++++.++++
T Consensus       339 -~~~~~~~~~~p~l~~~~~r~~~  360 (381)
T TIGR00837       339 -LAATIWAVIIPALLAWKARKKF  360 (381)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcC
Confidence             8899999999999999977653

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PLN03074 auxin influx permease; Provisional

Probab=98.38  E-value=5.3e-07  Score=86.27  Aligned_cols=83  Identities=18%  Similarity=0.226  Sum_probs=65.9

Q ss_pred             hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--cc--------ceeeeeeeeeccchhhhh-hHHHHHH
Q psy14213          8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE--RI--------GFGFLNWVLFKDIFLIAF-GLFVMVS   76 (302)
Q Consensus         8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~--~~--------g~~~~~~~~~k~i~~~~~-~~~~~~~   76 (302)
                      ++++|+++|++++++||+||++.+++++++|++.+..+++.+  ..        ..+.+.|..++|+..+.+ +..+..+
T Consensus       363 ~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~  442 (473)
T PLN03074        363 IWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGF  442 (473)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhcc
Confidence            788999999999999999999999999999999998754332  01        134455667899877765 5555789


Q ss_pred             HHHHHHHHhhhhhh
Q psy14213         77 GTVISLMDIFTAIQ   90 (302)
Q Consensus        77 Gt~~~~~~~~~~~~   90 (302)
                      |++.++.++++.+.
T Consensus       443 G~~asi~~ii~~~~  456 (473)
T PLN03074        443 GGWASMTNFVRQID  456 (473)
T ss_pred             chHHHHHHHHHhhh
Confidence            99999999887664

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.98  E-value=0.00022  Score=66.89  Aligned_cols=168  Identities=15%  Similarity=0.196  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCceEEEeeccccc-CccccccccchhhhHHHHHHHHHHHH--Hhhhhe--------
Q psy14213         71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMR-EPKKFRQPIGVFNVGIVLTALLFAIT--GMCGYM--------  139 (302)
Q Consensus        71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~-~p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~--------  139 (302)
                      ..........+++.-|          +++|++.+.++ |+++.+|   ++..+..+..++|...  .+.|-+        
T Consensus       185 ~~~~~lPv~~~Sf~f~----------~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~  251 (394)
T PF03222_consen  185 YILPALPVLVFSFGFH----------NIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLPREQFAEA  251 (394)
T ss_pred             HHHHHHHHHHHHHHHH----------hhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3344455555555555          99999999887 5566666   8888888888888765  334421        


Q ss_pred             -ecCCcccc--chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHH
Q psy14213        140 -KYGTAAQG--SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVL  216 (302)
Q Consensus       140 -~fG~~~~~--~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  216 (302)
                       .-|++..+  ....+..++.+......+.-.+++..||-=...-.+|.+.+. ++.+.    .++   .|...-.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~k~~~----~~~---~r~~~~~ltf~  323 (394)
T PF03222_consen  252 IAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-FKLKN----NSS---GRLKTWLLTFL  323 (394)
T ss_pred             HhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCc----ccc---chHHHHHHHHH
Confidence             11211111  122333333455666777777888888766666777887776 54311    112   22223344455


Q ss_pred             HHHHHHHhcCc-hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213        217 ITWAFALVIPH-LDLLISLFGAFCLASLGIIFPAAIHILVLRHEK  260 (302)
Q Consensus       217 ~~~~iA~~iP~-~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~  260 (302)
                      ..+++|...|+ |-..+++.| ...+.+..++|+++.+|.+++++
T Consensus       324 ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  324 PPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             hHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            67888888886 678899999 99999999999999999877654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=97.73  E-value=0.00074  Score=63.38  Aligned_cols=163  Identities=12%  Similarity=0.121  Sum_probs=108.4

Q ss_pred             HHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHH--Hhhhhee---------cCCccccchh
Q psy14213         83 MDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAIT--GMCGYMK---------YGTAAQGSMT  150 (302)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~~---------fG~~~~~~il  150 (302)
                      ...+.....+|+.|+++|++.+.+++ +++.+|   ++..+..+..++|+..  .+.|-..         -|+++ +..+
T Consensus       195 ~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~  270 (414)
T PRK10483        195 LMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLV  270 (414)
T ss_pred             HHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHH
Confidence            34555566677778999999999874 566666   9999999999998873  3333322         22222 1111


Q ss_pred             ccc---ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCc
Q psy14213        151 LNI---AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPH  227 (302)
Q Consensus       151 ~n~---p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~  227 (302)
                      ..+   .++..........-.+++..||-=...-.+|.+.+. ++.+.    +   ...|...-....+-.+++|...|+
T Consensus       271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~-~k~~~----~---~~~r~~~~~ltflPPl~~al~~P~  342 (414)
T PRK10483        271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL-FGFDD----S---AMGRFKTALLTFLPPVVGGLLFPN  342 (414)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhHHHHHHHhHH
Confidence            111   223345566777777777777655666677777766 54332    1   112333344566788899999998


Q ss_pred             -hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213        228 -LDLLISLFGAFCLASLGIIFPAAIHILVLRH  258 (302)
Q Consensus       228 -~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~  258 (302)
                       |-.-++..|.+ ...+.-++|+++-++.+|+
T Consensus       343 ~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        343 GFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence             88899999977 6777789999999998865

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=97.67  E-value=0.00068  Score=63.64  Aligned_cols=192  Identities=14%  Similarity=0.146  Sum_probs=121.9

Q ss_pred             HHHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHHHhhhheecCCcc-----c-----cchh
Q psy14213         82 LMDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-----Q-----GSMT  150 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-----~-----~~il  150 (302)
                      ....+.....+|+.|+++|++.+.+++ +++.+|   ++..+..+..++|+..=......-+.+.     +     ++++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            445556666677778999999999874 456566   8888888888888765433332222221     0     1222


Q ss_pred             ccc---ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCc
Q psy14213        151 LNI---AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPH  227 (302)
Q Consensus       151 ~n~---p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~  227 (302)
                      ..+   .++.+....+...-.+++..||-=...-.+|.+.+. ++++.    +   ...|...-....+..+++|...|+
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~~~~~----~---~~~r~~~~~l~flppli~a~~~P~  331 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADL-FQRRN----T---VGGRLQTGLITFLPPLAFALFYPR  331 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCc----c---ccCCchhehhhHHHHHHHHHHhHH
Confidence            222   123455666777777777777655666677777766 44322    1   122455566777888999999997


Q ss_pred             -hhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc-cccCCcchHHHHHHHHHHHHHHHHHHH
Q psy14213        228 -LDLLISLFGAFCLASLGIIFPAAIHILVLRHE-KVSFGPLGWILIKDIALIVFGIFIMVS  286 (302)
Q Consensus       228 -~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~-~~~~~~~~~~~~~~~~ii~~G~~~~v~  286 (302)
                       |....++.|. ..+.+.+++|+++-+|.++++ +++++.+ -.+..+++++.+|++..+.
T Consensus       332 ~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~-gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        332 GFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVK-GGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCC-CChHHHHHHHHHHHHHHHH
Confidence             6667888776 578999999999999988654 1111110 0245667777777766554

>PTZ00206 amino acid transporter; Provisional

Probab=97.64  E-value=1.6e-05  Score=76.14  Aligned_cols=75  Identities=19%  Similarity=0.386  Sum_probs=58.0

Q ss_pred             hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHH--hhccccceeeeeeeeeccchhhhhhHHHHHHHHHHHHHHh
Q psy14213          8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILV--LRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI   85 (302)
Q Consensus         8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~--~~~~~~g~~~~~~~~~k~i~~~~~~~~~~~~Gt~~~~~~~   85 (302)
                      +.++|+++||++.+++|+||+|.+.+++++|++.++..  ..++..  +..  ..++|.....+|....++||+.+.++.
T Consensus       389 ~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~--~~~--~~~~~~~lli~Gv~~~v~Gt~~si~~~  464 (467)
T PTZ00206        389 MLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKV--GPF--YYISTYVVLITGVIAIVFGTGATIWGV  464 (467)
T ss_pred             HHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhh--chH--HHHHHHHHHHHHhheEEecchhHhhHH
Confidence            46789999999999999999999999999999986542  122222  211  125677777799999999999988775


Q ss_pred             h
Q psy14213         86 F   86 (302)
Q Consensus        86 ~   86 (302)
                      .
T Consensus       465 ~  465 (467)
T PTZ00206        465 T  465 (467)
T ss_pred             h
Confidence            4

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.40  E-value=0.0024  Score=60.27  Aligned_cols=201  Identities=14%  Similarity=0.085  Sum_probs=125.5

Q ss_pred             HHHHhhhhhhccCCCceEEEeecccccCc-------c-ccccccchhhhHHHHHHHHHHHHHhhhheecCCcc-----cc
Q psy14213         81 SLMDIFTAIQEDFHPKTQIVKIEHHMREP-------K-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-----QG  147 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~M~~p-------~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-----~~  147 (302)
                      .....+....++|++|+.+++....+|+.       + .-+|.++++..+..+..++|+..-+..-..-+++.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            34455566666777779999987773211       1 01333348888888888888877655554444221     11


Q ss_pred             ch--hcc----cccC--------chHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhh---ccccccccchhhhhhhh
Q psy14213        148 SM--TLN----IAED--------QIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQ---HMVEYSEKKKLIVEYVF  210 (302)
Q Consensus       148 ~i--l~n----~p~~--------~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~  210 (302)
                      ++  +..    +++.        ........+.-.+++..||-=...-.+|.++.. +.+   +..++ +..++..+...
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl-~~~~~~~~~~~-~~~~~~~~~~~  367 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGL-ILKFGYKGDKT-KVSLGKLNTIS  367 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc-ccCHHHHHHHH
Confidence            11  211    2210        223445555555667777666666788888776 421   11110 11234456677


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy14213        211 REVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTV  289 (302)
Q Consensus       211 r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~  289 (302)
                      ...+.+.++.+|..-|++=.+++-+|+-....+.|++|...-.|.-.-++  ++    .+..|+++.+.|++......|
T Consensus       368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~--yr----~~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAK--YR----GRLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHH--hC----CCchhHHHHHHHHHHHHHHHH
Confidence            78888999999999999999999888888899999999987766533221  11    123578999999887655443

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.33  E-value=0.0092  Score=57.38  Aligned_cols=46  Identities=9%  Similarity=0.106  Sum_probs=34.4

Q ss_pred             HHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         80 ISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      .+++.|.          ......-+|+|||+ +.+|   .+..+..++.++|....+.-.
T Consensus       204 ~~af~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~  250 (474)
T TIGR03813       204 FLFYAGM----------EMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIA  250 (474)
T ss_pred             HHHHhch----------hHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence            4466777          55667779999996 4666   899999999999987654433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.33  E-value=0.0047  Score=58.01  Aligned_cols=164  Identities=12%  Similarity=0.083  Sum_probs=105.2

Q ss_pred             HHHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHH--Hhhhhe---------ecCCccccc-
Q psy14213         82 LMDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAIT--GMCGYM---------KYGTAAQGS-  148 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~---------~fG~~~~~~-  148 (302)
                      ....+..+..+|+.|+++|++.+.+++ +++.+|   .+.....+..++|..-  .+.|-+         .-|+++.+- 
T Consensus       195 i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~  271 (415)
T PRK09664        195 IFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV  271 (415)
T ss_pred             HHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH
Confidence            344555556667777999999988874 455455   7777777777777433  333422         222222221 


Q ss_pred             --hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcC
Q psy14213        149 --MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIP  226 (302)
Q Consensus       149 --il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP  226 (302)
                        ...+ .++.+........-.+++..||-=...-..|.+.+. ++.+.    +   ...|...-....+-.++.|...|
T Consensus       272 ~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~-~~~~~----~---~~~r~~~~~ltflPPl~~al~~P  342 (415)
T PRK09664        272 KSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL-FKIDN----S---HGGRFKTVLLTFLPPALLYLIFP  342 (415)
T ss_pred             HHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhhHHHHHHhh
Confidence              1112 223455667777777777777655555667777665 44322    1   12233344456678889999999


Q ss_pred             c-hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213        227 H-LDLLISLFGAFCLASLGIIFPAAIHILVLRH  258 (302)
Q Consensus       227 ~-~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~  258 (302)
                      + |=..++..|.. .+.+.-++|+++-++.+++
T Consensus       343 ~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        343 NGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            8 88899999996 5688889999999998875

>TIGR00814 stp serine transporter

Probab=97.23  E-value=0.0011  Score=62.20  Aligned_cols=192  Identities=13%  Similarity=0.080  Sum_probs=117.4

Q ss_pred             HHHhhhhhhccCCCceEEEeecc----cccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCccc-----cc--h
Q psy14213         82 LMDIFTAIQEDFHPKTQIVKIEH----HMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ-----GS--M  149 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~~----~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~-----~~--i  149 (302)
                      ...+......+|++|+.+++...    +.+||+ .-+|.+++...+..+..++|+..-+..-...+.+.-     ++  +
T Consensus       188 i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~  267 (397)
T TIGR00814       188 LWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISI  267 (397)
T ss_pred             HHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Confidence            34445555555666689998863    333232 012223388888888888888776655555553321     11  1


Q ss_pred             hcc---cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhh-hccccccccchhhhhhhhHHHHHHHHHHHHHhc
Q psy14213        150 TLN---IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIK-QHMVEYSEKKKLIVEYVFREVIVLITWAFALVI  225 (302)
Q Consensus       150 l~n---~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i  225 (302)
                      +..   -.++..........-.+++..||-=+..-.+|.+... +. .+..+.....++..+......+.+.++.+|..-
T Consensus       268 Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n  346 (397)
T TIGR00814       268 LSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI-VLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYIN  346 (397)
T ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            111   1112344555666666677788777778888888876 42 211111011234445677778889999999999


Q ss_pred             CchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHH-HHHHHHHHHHHH
Q psy14213        226 PHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWI-LIKDIALIVFGI  281 (302)
Q Consensus       226 P~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~-~~~~~~ii~~G~  281 (302)
                      |++=.+++-+|+-....+.|++|...-.|.-.-+       ++| +..|+++++.|+
T Consensus       347 ~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~-------~~~~~~~~~fv~~~g~  396 (397)
T TIGR00814       347 PSILSFIEALGGPIIAMILFLMPMYAIYKVPALK-------KYRGRISNVFVTVIGL  396 (397)
T ss_pred             ccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH-------HhCCCcchheeEeeec
Confidence            9999999988888889999999998766643222       121 134666666554

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.00  E-value=0.011  Score=56.31  Aligned_cols=170  Identities=11%  Similarity=0.067  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh--hheecCCcc--
Q psy14213         71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC--GYMKYGTAA--  145 (302)
Q Consensus        71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--GY~~fG~~~--  145 (302)
                      .+....-...+++.+.          ......-+|+|||+| .+|   ++..++..+.++|....+.  +...+++.-  
T Consensus       182 ~~~~a~~~~~faf~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~  248 (446)
T PRK10197        182 AVLSAMLITMFSFMGA----------EIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLK  248 (446)
T ss_pred             HHHHHHHHHHHHHhCH----------HHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCccccc
Confidence            3444444556677777          555678899999974 566   8878888888889876544  222232210  


Q ss_pred             -cc---chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhh-hhhHHHHH
Q psy14213        146 -QG---SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVE-YVFREVIV  215 (302)
Q Consensus       146 -~~---~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~r~~~~  215 (302)
                       .+   ....+.. ......+......+..+.+.--.++...+.++.. -+++     ..+. ++++...+ ..+..++.
T Consensus       249 ~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~-ardg~lP~~~~~~-~~~~~P~~Ail~~~~~~  325 (446)
T PRK10197        249 AVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL-SRRGDAPAVMGKI-NRSKTPYVAVLLSTGAA  325 (446)
T ss_pred             ccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcCHHHHhh-CcCCCcHHHHHHHHHHH
Confidence             01   1122222 1233444455555555444444445555555543 2211     1110 11111111 22222222


Q ss_pred             HHHHHHHHhcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213        216 LITWAFALVIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRH  258 (302)
Q Consensus       216 ~~~~~iA~~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~  258 (302)
                      .+..+.....|  .++.++++.+...  .+.+..+++.+++.+|+
T Consensus       326 ~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~  368 (446)
T PRK10197        326 FLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI  368 (446)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            22222222222  3666676655444  48888898888887764

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=96.97  E-value=0.056  Score=51.86  Aligned_cols=165  Identities=9%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             HHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCcc----ccc----h
Q psy14213         78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA----QGS----M  149 (302)
Q Consensus        78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~----~~~----i  149 (302)
                      ...+++.+.|          ....+.+|+|||++.+|   .+..++..+..+|....+..+-..+++.    +++    +
T Consensus       203 ~~~~~f~G~e----------~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~  269 (468)
T TIGR03810       203 VTVWVFIGIE----------GASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYV  269 (468)
T ss_pred             HHHHHHHhHh----------HHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHH
Confidence            3455666663          33356677888777777   8999999999999988766554333211    111    1


Q ss_pred             hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHh----hhhhccccccccchhhhh-hhhHHHHHHHHHHHHHh
Q psy14213        150 TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMN----YIKQHMVEYSEKKKLIVE-YVFREVIVLITWAFALV  224 (302)
Q Consensus       150 l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~iA~~  224 (302)
                      ..+.- .++...+...+..++.+.+.--......|.++..    .+.+...+. ++++...+ ..+...+.....++...
T Consensus       270 ~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~-~~~~tP~~al~~~~~i~~~~~l~~~~  347 (468)
T TIGR03810       270 LEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKE-NANGAPTNALWLTNGLIQIFLLTTLF  347 (468)
T ss_pred             HHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            11111 1233445555555555544333333444444332    011111110 11111212 22222222221111111


Q ss_pred             -cCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213        225 -IPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       225 -iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                       -+.++.+.++  +.....+.|.++++.+++.++++
T Consensus       348 ~~~~~~~l~~~--~~~~~li~y~~~~~~~~~l~~~~  381 (468)
T TIGR03810       348 SEQAYNFAISL--ATSAILVPYLWSAAYQVKLSWRG  381 (468)
T ss_pred             cHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence             2345555555  33356788999999999887553

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10655 potE putrescine transporter; Provisional

Probab=96.96  E-value=0.064  Score=50.93  Aligned_cols=48  Identities=6%  Similarity=0.037  Sum_probs=36.9

Q ss_pred             HHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213         77 GTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCG  137 (302)
Q Consensus        77 Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~G  137 (302)
                      ....+++.+.          ......-+|+|||+ +.+|   .+..+..++.++|.......
T Consensus       196 ~~~~~af~G~----------e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        196 AMTLWAFLGL----------ESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHhhh----------hhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            3445666677          66678889999996 5677   99999999999998865443

>PRK10249 phenylalanine transporter; Provisional

Probab=96.95  E-value=0.012  Score=56.41  Aligned_cols=167  Identities=13%  Similarity=0.176  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCcc----cc
Q psy14213         73 VMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA----QG  147 (302)
Q Consensus        73 ~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~----~~  147 (302)
                      ........+++.+.          ......-+|+|||+| .||   ++..++..+.++|......-....+++.    .+
T Consensus       212 ~~~~~~~~~af~G~----------e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  278 (458)
T PRK10249        212 ILSLAVIMFSFGGL----------ELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSS  278 (458)
T ss_pred             HHHHHHHHHHHcCH----------HHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHheeccccccCccCC
Confidence            34444455666677          455578899999964 566   8888888888889775443332222211    01


Q ss_pred             chh---cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchh-hhhhhhHHHHHHHH
Q psy14213        148 SMT---LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKL-IVEYVFREVIVLIT  218 (302)
Q Consensus       148 ~il---~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~-~~~~~~r~~~~~~~  218 (302)
                      +..   .+.. .+....+......+..+.+.--.++...+.++.. -+++     +.+- ++++. +.-..+..++..+.
T Consensus       279 p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~-ardg~lP~~~~kv-~~~~~P~~All~~~~i~~l~  355 (458)
T PRK10249        279 PFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGL-SVQGNAPKFLTRV-SRRGVPINSLMLSGAITSLV  355 (458)
T ss_pred             cHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcCHHHHHh-CCCCCCHHHHHHHHHHHHHH
Confidence            111   1111 1223333333344444333322233444544433 1211     1110 11111 22223333333333


Q ss_pred             HHHHHhcCc--hhHHHHHhhhHHhhhHHHHhhHHHHHHHhc
Q psy14213        219 WAFALVIPH--LDLLISLFGAFCLASLGIIFPAAIHILVLR  257 (302)
Q Consensus       219 ~~iA~~iP~--~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~  257 (302)
                      .++....|+  ++.+.++  +.....+.|++|++.+++.++
T Consensus       356 ~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        356 VLINYLLPQKAFGLLMAL--VVATLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             HHHHHhChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            333223332  4444444  233567899999999999775

>PRK10746 putative transport protein YifK; Provisional

Probab=96.82  E-value=0.029  Score=53.77  Aligned_cols=175  Identities=9%  Similarity=0.066  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc-cc--
Q psy14213         71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-AQ--  146 (302)
Q Consensus        71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~~--  146 (302)
                      .+........+++.+.          ..+...-+|+|||+ ..||   +...++..+.++|......--.....+ ..  
T Consensus       201 g~~~~~~~~~faf~G~----------e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~  267 (461)
T PRK10746        201 GFLTALCIVVASYQGV----------ELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSN  267 (461)
T ss_pred             HHHHHHHHHHHHhcCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCC
Confidence            3344445556667777          45557888999995 5565   777777777888887544333333221 11  


Q ss_pred             -cchh---cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-ccc---ccccchh-hhhhhhHHHHHHH
Q psy14213        147 -GSMT---LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MVE---YSEKKKL-IVEYVFREVIVLI  217 (302)
Q Consensus       147 -~~il---~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~~---~~~~~~~-~~~~~~r~~~~~~  217 (302)
                       ++..   .+.. ......+......+..+.+.--.++...+.++.. -+++ .++   +.+++.. +.-..+......+
T Consensus       268 ~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~-a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l  345 (461)
T PRK10746        268 GSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL-AKNRQLPAAMAKVSRHGVPVAGVAVSILILLV  345 (461)
T ss_pred             CCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence             1111   1111 1122334444444444444433445555655543 2211 110   0011111 1112222222222


Q ss_pred             HHHHHHhcCchhHHHHHhhhHHh--hhHHHHhhHHHHHHHhcccc
Q psy14213        218 TWAFALVIPHLDLLISLFGAFCL--ASLGIIFPAAIHILVLRHEK  260 (302)
Q Consensus       218 ~~~iA~~iP~~~~v~~lvGs~~~--~~l~fi~P~l~~l~~~~~~~  260 (302)
                      ...+....|+-+.+++.+-+.++  ..+.++.+++.+++.+++++
T Consensus       346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~  390 (461)
T PRK10746        346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK  390 (461)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33344456766666665554443  47889999999999877654

>PRK11021 putative transporter; Provisional

Probab=96.62  E-value=0.19  Score=47.35  Aligned_cols=52  Identities=12%  Similarity=0.330  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      +........+++.+.          ......-+|+|||+ +.+|   .+..+..++.++|......
T Consensus       179 ~~~~~~~~~~af~G~----------e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        179 LFAALGVMFWCFVGI----------EAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHhcH----------HHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence            334444555667777          66678899999995 5677   9999999999999987654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=96.59  E-value=0.043  Score=52.54  Aligned_cols=168  Identities=11%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh--hheecCCcc--ccc
Q psy14213         74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC--GYMKYGTAA--QGS  148 (302)
Q Consensus        74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--GY~~fG~~~--~~~  148 (302)
                      ...+...+++.+.          ......-+|+|||+| .||   ++..++....+.|...-..  +...+++-.  .++
T Consensus       204 ~~~~~~~~af~G~----------e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP  270 (456)
T PRK10238        204 MMMAIIMFSFGGL----------ELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP  270 (456)
T ss_pred             HHHHHHHHHhcCH----------HHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence            3444556677777          455578899999964 666   7776777777777654222  122222111  111


Q ss_pred             h---hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhh-hhhHHHHHHHHH
Q psy14213        149 M---TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVE-YVFREVIVLITW  219 (302)
Q Consensus       149 i---l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~r~~~~~~~~  219 (302)
                      .   ..+.. ......+......+..+.+.--..+...+.++.. -+++     +.+- ++++...+ ..+...+..+..
T Consensus       271 ~~~~~~~~g-~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~-ardg~lP~~f~kv-~~~~~P~~Ail~~~~i~~l~~  347 (456)
T PRK10238        271 FVLIFHELG-DTFVANALNIVVLTAALSVYNSCVYCNSRMLFGL-AQQGNAPKALASV-DKRGVPVNTILVSALVTALCV  347 (456)
T ss_pred             HHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHhh-CcCCCcHHHHHHHHHHHHHHH
Confidence            1   11121 1223334444444444433333344555555443 2211     1110 11111222 222222222222


Q ss_pred             HHHHhcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213        220 AFALVIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       220 ~iA~~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                      ++....|  .++.+.++  +..+..+.|.+|++.+++.+|++
T Consensus       348 l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~~  387 (456)
T PRK10238        348 LINYLAPESAFGLLMAL--VVSALVINWAMISLAHMKFRRAK  387 (456)
T ss_pred             HHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211223  25555555  33456789999999999987653

>TIGR00909 2A0306 amino acid transporter

Probab=96.53  E-value=0.091  Score=49.66  Aligned_cols=164  Identities=12%  Similarity=0.067  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc--ccc-----
Q psy14213         76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA--AQG-----  147 (302)
Q Consensus        76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~--~~~-----  147 (302)
                      .....+++.+.          .......+|+|||+ +.+|   .+..++.++.++|..........-+.+  .++     
T Consensus       201 ~~~~~~af~G~----------e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~  267 (429)
T TIGR00909       201 TALVFFAFIGF----------EAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLS  267 (429)
T ss_pred             HHHHHHHHhhH----------HHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHH
Confidence            33445556666          45557889999995 4566   899999999999998865443222111  111     


Q ss_pred             chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHH
Q psy14213        148 SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFA  222 (302)
Q Consensus       148 ~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA  222 (302)
                      .+..+.. .++...+..+...+....+.--......+.+... -+++     ..+..++.+...+..+-..  ..+. +.
T Consensus       268 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~-a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~-~~  342 (429)
T TIGR00909       268 LVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM-SRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAA-LL  342 (429)
T ss_pred             HHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHH-HH
Confidence            1111111 2334445555555555555444444444444433 2221     1110011111111111111  1111 11


Q ss_pred             HhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213        223 LVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       223 ~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                      ....+++.+.++.  ..+..+.|++.++-.++.++++
T Consensus       343 ~~~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~~  377 (429)
T TIGR00909       343 ASLVPLEGLAELT--SIGTLIAFAAVNVAVIILRRRR  377 (429)
T ss_pred             HHHcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence            2245677777753  3334667777777776766544

>PRK15049 L-asparagine permease; Provisional

Probab=96.48  E-value=0.069  Score=51.76  Aligned_cols=163  Identities=9%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             HHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCc-c---ccchh--
Q psy14213         78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-A---QGSMT--  150 (302)
Q Consensus        78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~---~~~il--  150 (302)
                      ...+++.+.          ..+...-+|+|||+| .+|   ++..++..+.++|......-....+.+ .   .++..  
T Consensus       228 ~~~faf~G~----------e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~  294 (499)
T PRK15049        228 GVVFAFASI----------EMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF  294 (499)
T ss_pred             HHHHHHhhH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence            355667777          555578899999974 666   888888888888887655433333311 1   11111  


Q ss_pred             -cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-cc----cccccchhhhh-hhhHHHHHHHHHHHHH
Q psy14213        151 -LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MV----EYSEKKKLIVE-YVFREVIVLITWAFAL  223 (302)
Q Consensus       151 -~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~----~~~~~~~~~~~-~~~r~~~~~~~~~iA~  223 (302)
                       .+.. ..+...+......+..+.+.--.++...+.++.. -+++ .+    +- ++++...+ .++..++.++..++..
T Consensus       295 ~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~-Ardg~lP~~f~kv-~k~~~P~~Ail~~~~i~~l~~~l~~  371 (499)
T PRK15049        295 FSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM-AMGGSAPSFMAKM-SRQHVPYAGILATLVVYVVGVFLNY  371 (499)
T ss_pred             HHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence             1111 1223344444445554444433344555555443 2211 11    10 11111222 2223332222222333


Q ss_pred             hcCc--hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213        224 VIPH--LDLLISLFGAFCLASLGIIFPAAIHILVLRH  258 (302)
Q Consensus       224 ~iP~--~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~  258 (302)
                      ..|.  ++.++++  +..+..+.|.+|++.+++.+++
T Consensus       372 ~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        372 LVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             cChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence            3332  5555665  4456788999999999988754

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=96.46  E-value=0.13  Score=49.08  Aligned_cols=46  Identities=9%  Similarity=0.122  Sum_probs=35.6

Q ss_pred             HHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      ...+++.+.          ......-+|+|||+ +.+|   .+..+..++.++|......
T Consensus       199 ~~~~af~G~----------e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        199 VTLWSFIGV----------ESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHhH----------HHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHH
Confidence            445566666          45557889999996 5666   9999999999999988765

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=96.45  E-value=0.068  Score=51.33  Aligned_cols=52  Identities=6%  Similarity=0.027  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      .......+++.+.          ......-+|+|||+| .+|   ++..+...+.+.|......-+
T Consensus       215 ~~~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        215 AGFQIAVFAFVGI----------ELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHhcH----------HHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence            3334455666677          556678899999974 566   776666667777876655443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.42  E-value=0.13  Score=49.55  Aligned_cols=33  Identities=3%  Similarity=0.005  Sum_probs=23.6

Q ss_pred             eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHH
Q psy14213         97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAI  132 (302)
Q Consensus        97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~  132 (302)
                      ......-+|+|||+ +.+|   ++..+..++.+++..
T Consensus       234 e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~  267 (482)
T TIGR00907       234 DGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFC  267 (482)
T ss_pred             chhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHH
Confidence            66778899999996 4566   787877766654433

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.33  E-value=0.048  Score=51.44  Aligned_cols=168  Identities=14%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccc---cch-
Q psy14213         74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ---GSM-  149 (302)
Q Consensus        74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~---~~i-  149 (302)
                      ..+....+++.+.          ......-+|+|| |+.+|   .+..++.++.++|......-....+++..   ++. 
T Consensus       192 ~~~~~~~~~~~G~----------e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~  257 (426)
T PF13520_consen  192 AGFSVAFFAFSGF----------EAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSP  257 (426)
T ss_dssp             HHHHHHGGGGTTT----------THHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHH
T ss_pred             hHHHHHHhhcccc----------cccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccc
Confidence            3344445555566          566688888988 56788   99999999999999886655444443211   111 


Q ss_pred             --hcc---cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhcc-ccccc---cchhhhhhhhHHHHHHHHHH
Q psy14213        150 --TLN---IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHM-VEYSE---KKKLIVEYVFREVIVLITWA  220 (302)
Q Consensus       150 --l~n---~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~r~~~~~~~~~  220 (302)
                        ...   .-..++...+..+...+..+.+..-.+....+.++.. -+++. ++.-.   +++...+...  .....+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~-a~d~~lP~~~~~~~k~~~P~~a~~--~~~~i~~i  334 (426)
T PF13520_consen  258 SPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM-ARDGVLPKWFAKVNKFGTPYNAII--LVAVISSI  334 (426)
T ss_dssp             CHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSGGGGTTSSSSSCHHHHH--HHHHHHHH
T ss_pred             cccchhhccccccccccccccccccccccccchhhcchhhccccc-ccccchhhhhhhccccCCceeeeh--hhhHHHHH
Confidence              101   1112355555556666666666555555666666554 22221 11001   1111111111  11122212


Q ss_pred             HHH---hcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213        221 FAL---VIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRHEK  260 (302)
Q Consensus       221 iA~---~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~  260 (302)
                      ...   ..|  +++.+.++  +.....+.++++.+..++.+++++
T Consensus       335 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~  377 (426)
T PF13520_consen  335 LLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKRP  377 (426)
T ss_dssp             HHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred             HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcC
Confidence            221   234  45555554  444567778888888887776643

...

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.13  E-value=0.15  Score=48.44  Aligned_cols=170  Identities=13%  Similarity=0.143  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc-cccc
Q psy14213         71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-AQGS  148 (302)
Q Consensus        71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~~~~  148 (302)
                      ...........++.+.          ....+.-+|+|||+ +.+|   .+..++..+..+|......-....+++ ....
T Consensus       202 ~~~~~~~~~~~~f~G~----------e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~  268 (466)
T COG0531         202 GILAAILLAFFAFTGF----------EAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPAGDLAAS  268 (466)
T ss_pred             HHHHHHHHHHHHhhcH----------HHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc
Confidence            3444455556677777          55557779999995 4466   888999999999998887766666642 2211


Q ss_pred             hhccccc--------CchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-ccc----ccccchhhhhhhhHHHHH
Q psy14213        149 MTLNIAE--------DQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MVE----YSEKKKLIVEYVFREVIV  215 (302)
Q Consensus       149 il~n~p~--------~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~~----~~~~~~~~~~~~~r~~~~  215 (302)
                       ..+.|-        ..+...+..+...+....+..-...-..+.++.. -+++ .|+    -.++.+...+...-..++
T Consensus       269 -~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~-ardg~lP~~~~~~~~~~~~P~~a~~~~~ii  346 (466)
T COG0531         269 -APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAM-ARDGLLPKFFAKVNPKGRTPVIALILTGII  346 (466)
T ss_pred             -CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHHhCCCCCCCHHHHHHHHHH
Confidence             111111        1234444444445554444322222333333322 1111 111    001111122222212111


Q ss_pred             HHHHHHHHhc----CchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213        216 LITWAFALVI----PHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       216 ~~~~~iA~~i----P~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                      ..  .+....    ..++.+.++  +.....+.|.++.+..++.++++
T Consensus       347 ~~--~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~  390 (466)
T COG0531         347 SL--ILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRKK  390 (466)
T ss_pred             HH--HHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence            11  122222    234555555  45557789999999888877663

>PRK11387 S-methylmethionine transporter; Provisional

Probab=96.12  E-value=0.12  Score=49.59  Aligned_cols=46  Identities=15%  Similarity=0.023  Sum_probs=34.6

Q ss_pred             HHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhh
Q psy14213         79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCG  137 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~G  137 (302)
                      ..+++.+.          ......-+|+|||+| .+|   .+..++..+..+|.......
T Consensus       215 ~~faf~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        215 VNFAFSGT----------ELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHcCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            45566677          556688899999974 566   88888888888898876543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=96.07  E-value=0.18  Score=47.94  Aligned_cols=48  Identities=8%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      .....+++.+.          ......-+|+|||+ +.+|   .+..++.++.++|......
T Consensus       201 ~~~~~~af~G~----------e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        201 ISATSWSYTGM----------ASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHhhH----------HHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence            34456677777          56668899999997 4566   9999999999999887654

>KOG1287|consensus

Probab=95.82  E-value=0.2  Score=47.74  Aligned_cols=175  Identities=9%  Similarity=0.103  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCcccc
Q psy14213         69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQG  147 (302)
Q Consensus        69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~  147 (302)
                      .+.+.+.+-+..+++++-          ..+=.+-+|+|||+ .+|+   ++..++.++++.|+.+=+..+-.-   +.+
T Consensus       203 ~g~i~lafysglfa~~GW----------d~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vl---s~~  266 (479)
T KOG1287|consen  203 VGNIALAFYSGLFAFSGW----------DYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVL---SPD  266 (479)
T ss_pred             hHHHHHHHHHhhhcccCc----------hhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhheeEec---CHH
Confidence            345556666666666666          66668889999995 5566   999999999999998866544322   122


Q ss_pred             chhcc------ccc--CchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhh-ccccccccchhhhh-hhhHHHHHHH
Q psy14213        148 SMTLN------IAE--DQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQ-HMVEYSEKKKLIVE-YVFREVIVLI  217 (302)
Q Consensus       148 ~il~n------~p~--~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~r~~~~~~  217 (302)
                      +++.+      +.+  -+.+..+.....+++.+-+.--.++...+.+... -++ +.++.=...+.+.. =.........
T Consensus       267 e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~-areG~LP~~~s~i~~~~~TP~~allf~~~  345 (479)
T KOG1287|consen  267 EILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAG-AREGHLPAFFSMISVRRFTPRPALLFSGL  345 (479)
T ss_pred             HhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHccCccHHHHhhcCCCCCChHHHHHHHH
Confidence            22211      110  0122244445555555444433444444444333 111 11100000011110 1122333344


Q ss_pred             HHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213        218 TWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEK  260 (302)
Q Consensus       218 ~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~  260 (302)
                      ..++...+.|++.+++.++=.-.....+.+=+++++|.++++.
T Consensus       346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            4555556779999999999888888889999999999887764

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=95.81  E-value=0.65  Score=44.10  Aligned_cols=50  Identities=8%  Similarity=-0.008  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      .....+++.+.          ......-+|+|||+ +.+|   .+..+..++.++|......-.
T Consensus       193 ~~~~~faf~G~----------E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        193 ILLCLWAFVGV----------ESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHHHHHHHhhH----------HHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666          44457788999995 6777   999999999999998876543

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=95.75  E-value=0.25  Score=47.17  Aligned_cols=54  Identities=6%  Similarity=-0.092  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      +........+++.+.          ......-+|+|||+ +.||   ++..++.....+|........
T Consensus       203 ~~~a~~~~~~af~G~----------e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       203 VLLAILVTMFSFMGT----------EIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHHHHHHHHHhccH----------HHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence            334444455666677          56668899999996 4566   777777778888887644433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=95.74  E-value=0.24  Score=47.33  Aligned_cols=48  Identities=13%  Similarity=0.056  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh
Q psy14213         76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      .....+++.+.          ......-+|+|||+| .+|   .+..+...+.++|......
T Consensus       205 ~~~~~fsf~G~----------e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        205 LQMVMFAYGGI----------EIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHhCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            33455666777          455578899999975 556   7767777777778766443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=95.71  E-value=0.2  Score=49.33  Aligned_cols=163  Identities=12%  Similarity=0.056  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCc---cccch--
Q psy14213         76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA---AQGSM--  149 (302)
Q Consensus        76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~---~~~~i--  149 (302)
                      .....+++.|.          ..+...-+|+|||+| .+|   .+..++.+++++|..+...--..-+.+   .++.+  
T Consensus       237 ~~~~~faf~Gf----------d~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~  303 (557)
T TIGR00906       237 AATCFFAFIGF----------DAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPV  303 (557)
T ss_pred             HHHHHHHHhhH----------HHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHH
Confidence            33455677777          555688899999975 666   999999999999998865432222211   11111  


Q ss_pred             -hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14213        150 -TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFAL  223 (302)
Q Consensus       150 -l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~  223 (302)
                       ..... .++...+..++.......+.--.++...+.++.. -+++     +.+-.++.+...+..+  ...+.+.+++.
T Consensus       304 a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am-arDGlLP~~fakv~~r~~tP~~Ail--~~~iv~~il~~  379 (557)
T TIGR00906       304 AFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM-ARDGLLFKWLAQINSKTKTPINATV--VSGAIAALMAF  379 (557)
T ss_pred             HHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccHHHhccCCCCCCcHHHHH--HHHHHHHHHHH
Confidence             11111 1333444444444444444333444555555443 2211     1110011111111111  11122223333


Q ss_pred             hcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213        224 VIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRH  258 (302)
Q Consensus       224 ~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~  258 (302)
                       +.+++.+.++.  ..+..+.|.++++..+.++++
T Consensus       380 -~~~~~~l~~l~--sig~ll~y~lv~~~~l~lR~~  411 (557)
T TIGR00906       380 -LFDLKALVDLL--SIGTLLAYSLVAACVLILRYQ  411 (557)
T ss_pred             -HcCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc
Confidence             34577777763  345678999998877776643

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=95.66  E-value=0.56  Score=45.10  Aligned_cols=49  Identities=4%  Similarity=0.030  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         77 GTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        77 Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      ....+++.+.          ......-+|+||+++.+|   .+..+..++.++|........
T Consensus       206 ~~~~~af~G~----------e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       206 LVTLWVFIGI----------EGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHhH----------HHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3355566666          344466678888556677   999999999999998765533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=95.61  E-value=0.41  Score=45.98  Aligned_cols=49  Identities=8%  Similarity=-0.014  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         75 VSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        75 ~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      ......+++.+.          ......-+|+|||+ +.+|   ++..+...+..+|......
T Consensus       202 ~~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       202 VFVTAAFSFGGT----------ELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHhhhccH----------HHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            333445566676          45557889999996 4566   8889999999999987543

>TIGR00908 2A0305 ethanolamine permease

Probab=95.53  E-value=0.46  Score=45.12  Aligned_cols=44  Identities=14%  Similarity=0.051  Sum_probs=31.9

Q ss_pred             HHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHh
Q psy14213         79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGM  135 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~  135 (302)
                      ..+++.+.          ......-+|+|||+ +.+|   .+..+..++..+|...-.
T Consensus       200 ~~~af~G~----------e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       200 AIWFFLAV----------EGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHH----------HHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence            34566666          45557788999996 4666   888888888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10836 lysine transporter; Provisional

Probab=95.23  E-value=0.59  Score=45.14  Aligned_cols=46  Identities=7%  Similarity=-0.095  Sum_probs=34.4

Q ss_pred             HHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213         80 ISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY  138 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY  138 (302)
                      .+++.+.          ......-+|+|||+ +.+|   ++..++..+.++|......-.
T Consensus       215 ~faf~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~  261 (489)
T PRK10836        215 GFSFQGT----------ELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIIS  261 (489)
T ss_pred             HHHHccH----------HHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            4566677          55557889999996 4556   888899999999998765433

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=94.99  E-value=0.8  Score=44.32  Aligned_cols=45  Identities=7%  Similarity=0.160  Sum_probs=33.7

Q ss_pred             HHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      ..+++.+.          ......-+|+|||+ +.+|   .+..+...+..+|....++
T Consensus       220 ~~~~f~G~----------e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        220 AIFAYGGI----------EAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHhH----------HHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHH
Confidence            34566666          45567889999996 4666   8999999999999876443

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=94.89  E-value=0.96  Score=43.98  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHH
Q psy14213         97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITG  134 (302)
Q Consensus        97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g  134 (302)
                      ......-+|+|||+ +++|   .+..++.++.++|....
T Consensus       211 E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       211 EASASHINELENPGRDYPL---AMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence            45557789999996 5777   88888888888887643

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=94.54  E-value=0.028  Score=52.62  Aligned_cols=72  Identities=29%  Similarity=0.579  Sum_probs=47.9

Q ss_pred             hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeee-eeccchhhhhhHHHHHHHHHH
Q psy14213          8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGLFVMVSGTVI   80 (302)
Q Consensus         8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~-~~k~i~~~~~~~~~~~~Gt~~   80 (302)
                      +.++|..+|+++.+++++||++.+.+++++|+.+.....+.+....... +. ...+.....+|......|++.
T Consensus       334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~  406 (409)
T PF01490_consen  334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWW-WILSILNWIIIVFGVVLMVFGTYQ  406 (409)
T ss_pred             hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccccee-ehhhccceEEEEEeeehhHHhHHH
Confidence            4678899999999999999999999999999999776544432211111 10 011223333566666666654

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>TIGR00911 2A0308 L-type amino acid transporter

Probab=94.33  E-value=0.7  Score=44.74  Aligned_cols=53  Identities=8%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213         72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCG  137 (302)
Q Consensus        72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~G  137 (302)
                      +........+++.+.          .......+|+|||+ +.+|   ++..+..++.++|......-
T Consensus       237 ~~~a~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       237 IVLAFYSGIWAYGGW----------NYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHhH----------HHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence            333444556677777          56667899999995 4666   99999999999999885443

>TIGR00930 2a30 K-Cl cotransporter

Probab=93.75  E-value=1.9  Score=45.31  Aligned_cols=52  Identities=12%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213         72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC  136 (302)
Q Consensus        72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~  136 (302)
                      +...+|....++.++          -....+-.|+|||+ ..++   .+..+..+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi----------~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGI----------LAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence            444555544455565          33345789999996 4566   8999999999999998753

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=93.73  E-value=2.5  Score=40.63  Aligned_cols=36  Identities=8%  Similarity=0.147  Sum_probs=25.6

Q ss_pred             eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHh
Q psy14213         97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGM  135 (302)
Q Consensus        97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~  135 (302)
                      ......-+|+|||+| .||   .+..+..+...+|...-+
T Consensus       230 e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~  266 (475)
T TIGR03428       230 GSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMIL  266 (475)
T ss_pred             chHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHH
Confidence            566688899999964 555   888888877665554433

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=89.08  E-value=14  Score=34.89  Aligned_cols=78  Identities=6%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHH
Q psy14213        203 KLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFG  280 (302)
Q Consensus       203 ~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G  280 (302)
                      .+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++..+..+|+...+...++|.+...|...++=
T Consensus       323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i  400 (416)
T COG1914         323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILI  400 (416)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHH
Confidence            456667777666666565555544999999999999988888888888877766652211334556555555554443

>KOG4303|consensus

Probab=87.21  E-value=0.35  Score=44.06  Aligned_cols=77  Identities=31%  Similarity=0.433  Sum_probs=50.6

Q ss_pred             chhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeeee-eccchhhhhhHHHHHHHHHHHHHHh
Q psy14213          7 YRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVL-FKDIFLIAFGLFVMVSGTVISLMDI   85 (302)
Q Consensus         7 ~~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~~-~k~i~~~~~~~~~~~~Gt~~~~~~~   85 (302)
                      .|..+|+-+||+..+++|+|++...+|.++.|+.-.+-.....      ..|+. .+|..++..|....+.|.+-+..+-
T Consensus       441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~------L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~L  514 (524)
T KOG4303|consen  441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT------LNNFEKRFDQGIIIMGCSVCVSGVYFSSMEL  514 (524)
T ss_pred             HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh------hhhHHHhhheeEEEEeeeEEEEeEehhhHHH
Confidence            4778999999999999999999999999999998754332211      01111 1333444455555555665555555


Q ss_pred             hhhh
Q psy14213         86 FTAI   89 (302)
Q Consensus        86 ~~~~   89 (302)
                      ++.+
T Consensus       515 i~A~  518 (524)
T KOG4303|consen  515 IRAI  518 (524)
T ss_pred             HHHH
Confidence            5444

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=85.06  E-value=1.3  Score=42.51  Aligned_cols=59  Identities=8%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecC
Q psy14213         71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYG  142 (302)
Q Consensus        71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG  142 (302)
                      .+........+++.+.          ......-+|.|||+ ..||   ....++....++|.......-...|
T Consensus       201 ~~~~~~~~~~~af~G~----------e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~  260 (478)
T PF00324_consen  201 GFFAALVFAFFAFVGF----------ESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVP  260 (478)
T ss_pred             HHHHhhhhhhcccccc----------cccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccC
Confidence            3444444555566666          67778899999996 4455   8889999999999987765444444

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=83.69  E-value=6.3  Score=36.17  Aligned_cols=145  Identities=13%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             EEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccch-------hcccccC---chHHHHHHHHH
Q psy14213         98 QIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSM-------TLNIAED---QIMAQIVKLLY  167 (302)
Q Consensus        98 ~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~i-------l~n~p~~---~~~~~~~~~~~  167 (302)
                      .......++|||++.+|   ....+..++..+|...-...-..+|.+..++.       .+...-.   +..-.+.-...
T Consensus       197 i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w  273 (359)
T TIGR00912       197 IFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFW  273 (359)
T ss_pred             HHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            34455677888888777   88999999999999888877777775432211       1111100   11111222223


Q ss_pred             HHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhh---HHhhhHH
Q psy14213        168 AFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGA---FCLASLG  244 (302)
Q Consensus       168 ~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs---~~~~~l~  244 (302)
                      ......+..+..+...+.+.+. ++.+.         .+....-.+.  ....++ ..||-..-......   ..+....
T Consensus       274 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  340 (359)
T TIGR00912       274 VFIIFVKIAFYLYIAVKGLSKL-FKKRK---------YSILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFF  340 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCC---------cchhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHH
Confidence            3444555566667777776655 33221         1112221111  222222 35653222333322   3345667


Q ss_pred             HHhhHHHHHHHhcc
Q psy14213        245 IIFPAAIHILVLRH  258 (302)
Q Consensus       245 fi~P~l~~l~~~~~  258 (302)
                      +++|.++.+....+
T Consensus       341 ~~~P~ll~~i~~ik  354 (359)
T TIGR00912       341 LLLPLILFIIVKIK  354 (359)
T ss_pred             HHHHHHHHHHHHHH
Confidence            78899887775543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1303|consensus

Probab=83.17  E-value=1.3  Score=42.15  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=33.6

Q ss_pred             hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14213          8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHIL   44 (302)
Q Consensus         8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~   44 (302)
                      +..+|+.+|.++.+.||+||+....+..++|...-+.
T Consensus       361 ~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~  397 (437)
T KOG1303|consen  361 TTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL  397 (437)
T ss_pred             HHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999988543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 30/240 (12%), Positives = 79/240 (32%), Gaps = 65/240 (27%)

Query: 20  LLISLFGAFCLASLGIIFPATI----HILVLRHERI---GFGFLNWVLFKDIFLIAFGLF 72
             +S+              AT     H+   +   I       L    ++ +F     +F
Sbjct: 328 RRLSIIAESI-----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVF 381

Query: 73  ---VMVSGTVISLM--DIFTAIQED----FHPKTQIVKIEHHMREPKKFRQPIGVFNVGI 123
                +   ++SL+  D+  +         H  + + K      +PK+           I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKEST---------I 426

Query: 124 VLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPL 183
            + ++                    + + +  +  + +   ++  + I  ++   + +P 
Sbjct: 427 SIPSIYL-----------------ELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPP 467

Query: 184 EL--LWMNYIKQHM--VEYSEK----KKLIVEYVFREV-IVLITWAFALVIPHLDLLISL 234
            L   + ++I  H+  +E+ E+    + + +++ F E  I   + A+      L+ L  L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.31
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	96.61
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	96.52

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.31  E-value=0.0034  Score=59.14  Aligned_cols=44  Identities=14%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCC
Q psy14213         97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGT  143 (302)
Q Consensus        97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~  143 (302)
                      ......-+|+|||+| .+|   .+..++.++.++|....+.-....++
T Consensus       218 e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~  262 (511)
T 4djk_A          218 EASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPG  262 (511)
T ss_dssp             GGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCH
Confidence            566688999999964 566   89999999999999887766555554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=96.61  E-value=0.019  Score=52.94  Aligned_cols=152  Identities=9%  Similarity=0.047  Sum_probs=75.6

Q ss_pred             eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCcc-c---cchhcc-ccc--CchHHHHHHHHHH
Q psy14213         97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-Q---GSMTLN-IAE--DQIMAQIVKLLYA  168 (302)
Q Consensus        97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-~---~~il~n-~p~--~~~~~~~~~~~~~  168 (302)
                      .......+|+|||+| .+|   .+..+..++.++|....+......+.+. .   ++.... ..+  .++...+..+...
T Consensus       205 e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~  281 (444)
T 3gia_A          205 GVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL  281 (444)
T ss_dssp             HHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHH
Confidence            566688899999964 677   8999999999999988765444443221 0   000000 000  0122223333333


Q ss_pred             HHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhH
Q psy14213        169 FVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASL  243 (302)
Q Consensus       169 l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l  243 (302)
                      +..+.+.--.+....+.++.. -+++     +.+. +++.......+.    .....+...+.+++.+.++.  ..+..+
T Consensus       282 ~~~~~~~~~~~~~~sR~l~a~-a~dg~lP~~f~~~-~~~~P~~a~~~~----~~~~~~~~~~~~~~~l~~~~--~~~~~~  353 (444)
T 3gia_A          282 FSISSAMNATIYGGANVAYSL-AKDGELPEFFERK-VWFKSTEGLYIT----SALGVLFALLFNMEGVASIT--SAVFMV  353 (444)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHH-HHHSSCCSSCCTT-SCCSCTHHHHHH----HHHHHHHHHHSCHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHhCC-CCCCCcHHHHHH----HHHHHHHHHHcCHHHHHHHH--HHHHHH
Confidence            333333222333334444332 2221     1110 111111111111    11112222245788887773  345678


Q ss_pred             HHHhhHHHHHHHhccc
Q psy14213        244 GIIFPAAIHILVLRHE  259 (302)
Q Consensus       244 ~fi~P~l~~l~~~~~~  259 (302)
                      .|.++++.+++.++++
T Consensus       354 ~~~~~~~~~~~~r~~~  369 (444)
T 3gia_A          354 IYLFVILSHYILIDEV  369 (444)
T ss_dssp             HHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhhhcC
Confidence            8999999888877664

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=96.52  E-value=0.013  Score=54.12  Aligned_cols=153  Identities=13%  Similarity=0.053  Sum_probs=77.5

Q ss_pred             eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCccc----cchh---cccccCchHHHHHHHHHH
Q psy14213         97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ----GSMT---LNIAEDQIMAQIVKLLYA  168 (302)
Q Consensus        97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~----~~il---~n~p~~~~~~~~~~~~~~  168 (302)
                      .......+|+|||+ +.+|   .+..+..++.++|...........+.+..    ++..   .+.- .++...+..+...
T Consensus       208 e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~  283 (445)
T 3l1l_A          208 ESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAA  283 (445)
T ss_dssp             THHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            66678899999995 5667   88999999999999887765555543221    1111   1111 1233344444444


Q ss_pred             HHHHHhhhcchhcHHHHHHHhhhhh-----ccccccccchhhhhhhhHHHHHHHHHHHHHh--cC----chhHHHHHhhh
Q psy14213        169 FVIFFSYPLQNFVPLELLWMNYIKQ-----HMVEYSEKKKLIVEYVFREVIVLITWAFALV--IP----HLDLLISLFGA  237 (302)
Q Consensus       169 l~~~~sypL~~~p~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~--iP----~~~~v~~lvGs  237 (302)
                      +..+.+.--..+...+.++.. -++     ...+. ++++...+.++-...  .+.+++..  .|    .++.+.++.+ 
T Consensus       284 ~~~~~~~~~~~~~~sR~~~~~-a~dg~lP~~~~~~-~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~-  358 (445)
T 3l1l_A          284 AGCLGSLGGWTLLAGQTAKAA-ADDGLFPPIFARV-NKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFGLVSSVSV-  358 (445)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHH-HHTTSSCGGGGCC-CTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCCcHHHHhc-CCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHH-
Confidence            444444333334444444432 221     11110 111111111111111  11112221  23    3555555533 


Q ss_pred             HHhhhHHHHhhHHHHHHHhccc
Q psy14213        238 FCLASLGIIFPAAIHILVLRHE  259 (302)
Q Consensus       238 ~~~~~l~fi~P~l~~l~~~~~~  259 (302)
                       .+..+.|.++++.+++.++++
T Consensus       359 -~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          359 -IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSSS
T ss_pred             -HHHHHHHHHHHHHHHHHhhcC
Confidence             456788999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00