Psyllid ID: psy14218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVPPPS
Secondary Structure (PSIPRED)
cccEEcccccccccccccccccccccEEEEEEEcccccccEEcEEEEccccccccEEEEcccccccccccEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcHccccccccccccccccccHEEEEEEcccccccccEEEEEEccccccHcccccccccccccccEEEcccccccccccccccccHHHcccccc
Coil and Loop (DISEMBL)
fweiisdehgidptgayhgdsdlqLERINVYYneasgskyvprailvdlepgtmdavrsgpfgqifrpdnfvfgqsgagnnwakghytepiplpvppps
Flexible Loop (DISEMBL)
FWEIIsdehgidptgayhgdsdLQLERINVYYNeasgskyvpRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYtepiplpvppps
Low Complexity Region (SEG)
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVPPPS
Disordered region (IsUnstruct)
*************TGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY************
Disordered Region (DISOPRED)
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVP***
Disordered Region (DISEMBL)
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVPPPS
Disordered Region (DISPRO)
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVPPPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P30883	445	Tubulin beta-4 chain OS=X	N/A	N/A	0.898	0.2	0.943	6e-49
P32882	445	Tubulin beta-2 chain OS=G	yes	N/A	0.898	0.2	0.943	7e-49
Q3KRE8	445	Tubulin beta-2B chain OS=	yes	N/A	0.898	0.2	0.943	7e-49
Q9CWF2	445	Tubulin beta-2B chain OS=	yes	N/A	0.898	0.2	0.943	7e-49
Q9BVA1	445	Tubulin beta-2B chain OS=	yes	N/A	0.898	0.2	0.943	7e-49
Q6B856	445	Tubulin beta-2B chain OS=	yes	N/A	0.898	0.2	0.943	7e-49
P02554	445	Tubulin beta chain OS=Sus	yes	N/A	0.898	0.2	0.943	7e-49
P09203	445	Tubulin beta-1 chain OS=G	yes	N/A	0.898	0.2	0.943	8e-49
Q27U48	447	Tubulin beta-1 chain OS=G	N/A	N/A	0.898	0.199	0.955	1e-48
Q24560	447	Tubulin beta-1 chain OS=D	yes	N/A	0.898	0.199	0.955	1e-48

>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1

 Score =  192 bits (488), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTGAYHGDSDLQLERINVYYNEA+G KYVPRA+LVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Xenopus laevis (taxid: 8355)

>sp|P32882|TBB2_CHICK Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Gallus gallus (taxid: 9031)

>sp|Q3KRE8|TBB2B_RAT Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity). TUBB2B is implicated in neuronal migration.

Rattus norvegicus (taxid: 10116)

>sp|Q9CWF2|TBB2B_MOUSE Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity). TUBB2B is implicated in neuronal migration.

Mus musculus (taxid: 10090)

>sp|Q9BVA1|TBB2B_HUMAN Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity). TUBB2B is implicated in neuronal migration.

Homo sapiens (taxid: 9606)

>sp|Q6B856|TBB2B_BOVIN Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Bos taurus (taxid: 9913)

>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Sus scrofa (taxid: 9823)

>sp|P09203|TBB1_CHICK Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1

 Score =  191 bits (486), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Gallus gallus (taxid: 9031)

>sp|Q27U48|TBB1_GLOMM Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1

 Score =  191 bits (485), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWEIISDEHGID TGAYHGDSDLQLERINVYYNEASG KYVPRA+LVDLEPGTMD+VRSG
Sbjct: 20  FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Glossina morsitans morsitans (taxid: 37546)

>sp|Q24560|TBB1_DROME Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2

 Score =  191 bits (485), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWEIISDEHGID TGAYHGDSDLQLERINVYYNEASG KYVPRA+LVDLEPGTMD+VRSG
Sbjct: 20  FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
307189546	550	Tubulin beta chain [Camponotus floridanu	0.898	0.161	0.955	5e-49
167745164	447	beta-tubulin [Chilo suppressalis]	0.898	0.199	0.977	2e-48
156553669	446	PREDICTED: tubulin beta-1 chain-like [Na	0.898	0.199	0.966	3e-48
91086093	447	PREDICTED: similar to beta1-tubulin [Tri	0.898	0.199	0.977	6e-48
164683616	447	beta1-tubulin [Monochamus alternatus]	0.898	0.199	0.977	6e-48
110762983	447	PREDICTED: tubulin beta chain-like [Apis	0.898	0.199	0.966	9e-48
340723999	447	PREDICTED: tubulin beta-4 chain-like [Bo	0.898	0.199	0.966	1e-47
322792784	447	hypothetical protein SINV_02386 [Solenop	0.898	0.199	0.955	1e-47
307205450	447	Tubulin beta chain [Harpegnathos saltato	0.898	0.199	0.955	1e-47
383854500	447	PREDICTED: tubulin beta-4 chain-like [Me	0.898	0.199	0.966	1e-47

>gi|307189546|gb|EFN73922.1| Tubulin beta chain [Camponotus floridanus]

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+G KYVPRAILVDLEPGTMDAVRSG
Sbjct: 166 FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDAVRSG 225

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 226 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 254

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167745164|gb|ABZ91904.1| beta-tubulin [Chilo suppressalis]

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/89 (97%), Positives = 88/89 (98%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Chilo suppressalis

Species: Chilo suppressalis

Genus: Chilo

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553669|ref|XP_001602360.1| PREDICTED: tubulin beta-1 chain-like [Nasonia vitripennis]

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/89 (96%), Positives = 88/89 (98%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTGAYHGDSDLQLERINVYYNEA+G KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086093|ref|XP_967267.1| PREDICTED: similar to beta1-tubulin [Tribolium castaneum] gi|270010215|gb|EFA06663.1| hypothetical protein TcasGA2_TC009589 [Tribolium castaneum]

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/89 (97%), Positives = 88/89 (98%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|164683616|gb|ABY66392.1| beta1-tubulin [Monochamus alternatus]

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/89 (97%), Positives = 88/89 (98%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Monochamus alternatus

Species: Monochamus alternatus

Genus: Monochamus

Family: Cerambycidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762983|ref|XP_394038.2| PREDICTED: tubulin beta chain-like [Apis mellifera]

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/89 (96%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723999|ref|XP_003400373.1| PREDICTED: tubulin beta-4 chain-like [Bombus terrestris] gi|350427858|ref|XP_003494904.1| PREDICTED: tubulin beta-4 chain-like [Bombus impatiens] gi|380021994|ref|XP_003694840.1| PREDICTED: tubulin beta-4 chain-like [Apis florea]

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/89 (96%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792784|gb|EFZ16617.1| hypothetical protein SINV_02386 [Solenopsis invicta] gi|332025231|gb|EGI65405.1| Tubulin beta chain [Acromyrmex echinatior]

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+G KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205450|gb|EFN83782.1| Tubulin beta chain [Harpegnathos saltator]

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+G KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854500|ref|XP_003702759.1| PREDICTED: tubulin beta-4 chain-like [Megachile rotundata]

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/89 (96%), Positives = 87/89 (97%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEASG KYVPRAILVDLEPGTMDAVRSG
Sbjct: 20  FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDAVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|E1C520	445	TUBB2B "Uncharacterized protei	0.898	0.2	0.943	4.4e-45
UNIPROTKB|G1K338	445	LOC768337 "Uncharacterized pro	0.898	0.2	0.943	4.4e-45
UNIPROTKB|P09203	445	P09203 "Tubulin beta-1 chain"	0.898	0.2	0.943	4.4e-45
UNIPROTKB|P32882	445	P32882 "Tubulin beta-2 chain"	0.898	0.2	0.943	4.4e-45
UNIPROTKB|E1BJB1	445	TUBB2A "Uncharacterized protei	0.898	0.2	0.943	4.4e-45
UNIPROTKB|G3N1W7	330	TUBB2B "Tubulin beta-2B chain"	0.898	0.269	0.943	4.4e-45
UNIPROTKB|G3X7R7	330	TUBB2A "Uncharacterized protei	0.898	0.269	0.943	4.4e-45
UNIPROTKB|Q6B856	445	TUBB2B "Tubulin beta-2B chain"	0.898	0.2	0.943	4.4e-45
UNIPROTKB|E2RFJ7	445	TUBB2B "Uncharacterized protei	0.898	0.2	0.943	4.4e-45
UNIPROTKB|F1PQ68	445	TUBB2B "Uncharacterized protei	0.898	0.2	0.943	4.4e-45

UNIPROTKB|E1C520 TUBB2B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|G1K338 LOC768337 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|P09203 P09203 "Tubulin beta-1 chain" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|P32882 P32882 "Tubulin beta-2 chain" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|E1BJB1 TUBB2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|G3N1W7 TUBB2B "Tubulin beta-2B chain" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|G3X7R7 TUBB2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q6B856 TUBB2B "Tubulin beta-2B chain" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|E2RFJ7 TUBB2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1PQ68 TUBB2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query:     1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
             FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct:    20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query:    61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
             PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct:    80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q767L7	TBB5_PIG	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q6B856	TBB2B_BOVIN	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
Q9YHC3	TBB1_GADMO	No assigned EC number	0.9101	0.8989	0.2	N/A	N/A
Q4R5B3	TBB2A_MACFA	No assigned EC number	0.9139	0.9393	0.2089	N/A	N/A
Q13885	TBB2A_HUMAN	No assigned EC number	0.9139	0.9393	0.2089	yes	N/A
Q6P9T8	TBB4B_RAT	No assigned EC number	0.9325	0.8989	0.2	yes	N/A
P68372	TBB4B_MOUSE	No assigned EC number	0.9325	0.8989	0.2	yes	N/A
P32882	TBB2_CHICK	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
P04350	TBB4A_HUMAN	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q2KJD0	TBB5_BOVIN	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P99024	TBB5_MOUSE	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q24560	TBB1_DROME	No assigned EC number	0.9550	0.8989	0.1991	yes	N/A
P02554	TBB_PIG	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
Q7JJU6	TBB5_PANTR	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q5R943	TBB5_PONAB	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q3KRE8	TBB2B_RAT	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
P69897	TBB5_RAT	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P85108	TBB2A_RAT	No assigned EC number	0.9139	0.9393	0.2089	yes	N/A
Q27U48	TBB1_GLOMM	No assigned EC number	0.9550	0.8989	0.1991	N/A	N/A
P41937	TBB4_CAEEL	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P09206	TBB3_CHICK	No assigned EC number	0.9213	0.8989	0.2	yes	N/A
P69893	TBB5_CRIGR	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P09203	TBB1_CHICK	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
P69895	TBB5_MACMU	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P68371	TBB4B_HUMAN	No assigned EC number	0.9325	0.8989	0.2	yes	N/A
O44388	TBB_TRITR	No assigned EC number	0.9101	0.8989	0.2004	N/A	N/A
Q3ZBU7	TBB4A_BOVIN	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
Q4R4X8	TBB4A_MACFA	No assigned EC number	0.9213	0.8989	0.2004	N/A	N/A
O17449	TBB1_MANSE	No assigned EC number	0.9462	0.9393	0.2080	N/A	N/A
Q9NFZ6	TBB2_ECHMU	No assigned EC number	0.9139	0.9393	0.2089	N/A	N/A
Q6GLE7	TBB5_XENTR	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P09244	TBB7_CHICK	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P11833	TBB_PARLI	No assigned EC number	0.9325	0.8989	0.1991	N/A	N/A
Q9BVA1	TBB2B_HUMAN	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
Q9CWF2	TBB2B_MOUSE	No assigned EC number	0.9438	0.8989	0.2	yes	N/A
Q91575	TBB5_XENLA	No assigned EC number	0.9213	0.8989	0.2004	N/A	N/A
P07437	TBB5_HUMAN	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P13602	TBB2_XENLA	No assigned EC number	0.9325	0.8989	0.2009	N/A	N/A
Q3MHM5	TBB4B_BOVIN	No assigned EC number	0.9325	0.8989	0.2	yes	N/A
Q9D6F9	TBB4A_MOUSE	No assigned EC number	0.9213	0.8989	0.2004	yes	N/A
P30883	TBB4_XENLA	No assigned EC number	0.9438	0.8989	0.2	N/A	N/A
Q7TMM9	TBB2A_MOUSE	No assigned EC number	0.9139	0.9393	0.2089	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
PLN00220	447	PLN00220, PLN00220, tubulin beta chain; Provisiona	4e-67
cd02187	425	cd02187, beta_tubulin, The tubulin superfamily inc	6e-67
PTZ00010	445	PTZ00010, PTZ00010, tubulin beta chain; Provisiona	4e-65
COG5023	443	COG5023, COG5023, Tubulin [Cytoskeleton]	1e-47
PLN00221	450	PLN00221, PLN00221, tubulin alpha chain; Provision	3e-24
PTZ00335	448	PTZ00335, PTZ00335, tubulin alpha chain; Provision	4e-23
pfam00091	210	pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do	9e-23
cd02186	434	cd02186, alpha_tubulin, The tubulin superfamily in	3e-22
cd02188	431	cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit	1e-21
smart00864	192	smart00864, Tubulin, Tubulin/FtsZ family, GTPase d	2e-19
PLN00222	454	PLN00222, PLN00222, tubulin gamma chain; Provision	1e-18
cd00286	328	cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ	1e-14
cd06059	382	cd06059, Tubulin, The tubulin superfamily includes	5e-14
PTZ00387	465	PTZ00387, PTZ00387, epsilon tubulin; Provisional	7e-12
cd02190	379	cd02190, epsilon_tubulin, The tubulin superfamily	1e-11
cd02189	446	cd02189, delta_tubulin, The tubulin superfamily in	1e-11

>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional

 Score =  207 bits (528), Expect = 4e-67
 Identities = 79/89 (88%), Positives = 86/89 (96%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE++ DEHGIDPTG YHGDSDLQLERINVYYNEASG +YVPRA+L+DLEPGTMD+VRSG
Sbjct: 20  FWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           P+GQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Length = 447

>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score =  206 bits (526), Expect = 6e-67
 Identities = 81/89 (91%), Positives = 86/89 (96%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHG+DPTG Y GDSDLQLERINVY+NEASG KYVPRAILVDLEPGTMD+VRSG
Sbjct: 19  FWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQ+FRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 79  PFGQLFRPDNFVFGQSGAGNNWAKGHYTE 107

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425

>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional

 Score =  201 bits (514), Expect = 4e-65
 Identities = 76/89 (85%), Positives = 86/89 (96%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMD+VR+G
Sbjct: 20  FWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           P+GQ+FRPDNF+FGQSGAGNNWAKGHYTE
Sbjct: 80  PYGQLFRPDNFIFGQSGAGNNWAKGHYTE 108

Length = 445

>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton]

 Score =  156 bits (397), Expect = 1e-47
 Identities = 52/89 (58%), Positives = 65/89 (73%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE +  EHGI P G     SD   ER +V++ EAS  K+VPRAILVDLEPG +D VR+G
Sbjct: 20  FWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           P+G +F P+N +FG+ GAGNNWA+GHYT 
Sbjct: 80  PYGSLFHPENIIFGKEGAGNNWARGHYTV 108

Length = 443

>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional

 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 2   WEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80

Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLISGKEDAANNFARGHYT 109

Length = 450

>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional

 Score = 90.9 bits (226), Expect = 4e-23
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 2   WEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D ++ +E    N +++E    K+VPR + +DLEP  +D VR+
Sbjct: 21  WELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80

Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLISGKEDAANNFARGHYT 109

Length = 448

>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score = 87.0 bits (216), Expect = 9e-23
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 1  FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           WE++  EHGIDP G          ++INV++ E+    Y PR I +D +P  ++ +++G
Sbjct: 17 LWELLCKEHGIDPDG-----MLFHADKINVFFEESGDGVYGPRFIAIDTDPQVLNEIKAG 71

Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEP 90
              +F  +N   G  GAGNN A G+YT  
Sbjct: 72 NK--LFIGNNLTKGLEGAGNNPAVGYYTHK 99

This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. Length = 210

>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 88.5 bits (220), Expect = 3e-22
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 2   WEIISDEHGIDPTGAYHGDS--DLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D       +  N +++E    K+VPRA+ +DLEP  +D VR+
Sbjct: 20  WELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT 79

Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 80  GTYRQLFHPEQLISGKEDAANNFARGHYT 108

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434

>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

 Score = 86.9 bits (216), Expect = 1e-21
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FW+ +  EHGI P G     +    +R +V++ +A    YVPRAIL+DLEP  ++++++ 
Sbjct: 19  FWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78

Query: 61  PFGQIFRPDNFVFGQS--GAGNNWAKGHYT 88
            +  ++ P+N    +   GAGNNWA G+  
Sbjct: 79  EYRNLYNPENIFLSKHGGGAGNNWASGYSQ 108

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping. Length = 431

>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score = 77.5 bits (192), Expect = 2e-19
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 28 INVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 87
              +         P A+ VDLEPG +D VR+    Q   P++   G+  AGNNW +G  
Sbjct: 1  KIKVFGVG---GGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57

Query: 88 TEPIP 92
              P
Sbjct: 58 AGADP 62

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. Length = 192

>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FW+ +  EHGI   G     +    +R +V++ +A    Y+PRA+L+DLEP  ++ +++ 
Sbjct: 21  FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNS 80

Query: 61  PFGQIFRPDNFVFGQS--GAGNNWAKGH 86
            +  ++  +N        GAGNNWA G+
Sbjct: 81  EYRNLYNHENIFVSDHGGGAGNNWASGY 108

Length = 454

>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 44 AILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           +LVD EPG +D   SGP+  +F     +    GAGNNWA GH T 
Sbjct: 22 LVLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETA 67

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. Length = 328

>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 65.4 bits (160), Expect = 5e-14
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 37 GSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
          G+K+    ILVDL+P  ++ +  G   ++F P+  V G+ G+GNNWA+G+YT 
Sbjct: 15 GNKFWELLILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTI 67

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology. Length = 382

>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional

 Score = 59.4 bits (144), Expect = 7e-12
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1   FWEIISDEH-GIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           FW++   EH  I+    Y    D   E ++   N         RA+LVD+E G ++ +  
Sbjct: 20  FWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILK 79

Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHY 87
            P G +F  + FV   SGAGNNWA GH 
Sbjct: 80  SPLGDLFDENFFVSDVSGAGNNWAVGHM 107

Length = 465

>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 43 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
          RA+L+D+E G ++ +  GP   +F     V   SGAGNNWA G++ 
Sbjct: 31 RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQ 76

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis. Length = 379

>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN--EASGSKYVPRAILVDLEPGTMDAVR 58
            ++ ++ E       +   D   + ER        E S  + + R++LVD+EP  +++  
Sbjct: 18  LFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTL 71

Query: 59  SGPFGQI--FRPDNFVFGQSGAGNNWAKGHY 87
           S   G    +   N +  QSG+GNNWA G+Y
Sbjct: 72  SKSSGGTWKYDKKNVICQQSGSGNNWAYGYY 102

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies. Length = 446

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
COG5023	443	Tubulin [Cytoskeleton]	100.0
PTZ00335	448	tubulin alpha chain; Provisional	99.96
PLN00221	450	tubulin alpha chain; Provisional	99.95
KOG1374|consensus	448		99.95
PLN00220	447	tubulin beta chain; Provisional	99.95
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	99.94
KOG1376|consensus	407		99.94
cd02186	434	alpha_tubulin The tubulin superfamily includes fiv	99.94
PTZ00010	445	tubulin beta chain; Provisional	99.94
PLN00222	454	tubulin gamma chain; Provisional	99.94
cd02187	425	beta_tubulin The tubulin superfamily includes five	99.93
cd02189	446	delta_tubulin The tubulin superfamily includes fiv	99.93
PTZ00387	465	epsilon tubulin; Provisional	99.93
PF00091	216	Tubulin: Tubulin/FtsZ family, GTPase domain; Inter	99.81
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	99.77
KOG1375|consensus	369		99.24
cd06059	382	Tubulin The tubulin superfamily includes five dist	99.21
smart00864	192	Tubulin Tubulin/FtsZ family, GTPase domain. This d	99.05
cd00286	328	Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin	98.69
cd02202	349	FtsZ_type2 FtsZ is a GTPase that is similar to the	96.32
PF10644	115	Misat_Tub_SegII: Misato Segment II tubulin-like do	86.08

>COG5023 Tubulin [Cytoskeleton]

Probab=100.00  E-value=6.6e-39  Score=242.59  Aligned_cols=96  Identities=54%  Similarity=1.022  Sum_probs=93.3

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      |||+||+||||+++|.+.+.++.+.+++++||+|++.|+|+||||+|||||.||++|+++++++||+|+|+|++|+||||
T Consensus        20 fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~lf~Pen~i~gkegAgN   99 (443)
T COG5023          20 FWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGN   99 (443)
T ss_pred             HHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccccccChhheeeccccccc
Confidence            89999999999999999988888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPVP   96 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~~   96 (99)
                      |||+|||++|++++|.
T Consensus       100 nwA~GhYtvG~e~~dd  115 (443)
T COG5023         100 NWARGHYTVGKEIIDD  115 (443)
T ss_pred             cccccccchhHHHHHH
Confidence            9999999999999864

>PTZ00335 tubulin alpha chain; Provisional

Probab=99.96  E-value=7.8e-30  Score=198.64  Aligned_cols=95  Identities=37%  Similarity=0.771  Sum_probs=86.3

Q ss_pred             CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      ||+++|+||+|+++|.+.....  .+.+++++||+|+.+++|+|||||||+||++|++|+.++++++|++++++++++||
T Consensus        20 fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~ga   99 (448)
T PTZ00335         20 CWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA   99 (448)
T ss_pred             HHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCccccccCchheeecCCCC
Confidence            7999999999999998754332  23578899999999999999999999999999999999899999999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|+++.|
T Consensus       100 gnnwa~Gy~~~G~~~~d  116 (448)
T PTZ00335        100 ANNFARGHYTIGKEIVD  116 (448)
T ss_pred             CCcccccccchhhhHhH
Confidence            99999999999998765

>PLN00221 tubulin alpha chain; Provisional

Probab=99.95  E-value=7.1e-30  Score=198.96  Aligned_cols=95  Identities=39%  Similarity=0.738  Sum_probs=86.2

Q ss_pred             CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      ||+++|+||+|+++|.+.....  .+.+++++||+|+.+++|+|||||||+||++|++|+.+++++||++++++++++||
T Consensus        20 fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~ga   99 (450)
T PLN00221         20 CWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA   99 (450)
T ss_pred             HHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCccccccCccceeccCCCc
Confidence            7999999999999998754432  23578999999999999999999999999999999998889999999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|++++|
T Consensus       100 gNnwa~Gy~~~g~~~~~  116 (450)
T PLN00221        100 ANNFARGHYTIGKEIVD  116 (450)
T ss_pred             cccccccccchhHHHHH
Confidence            99999999999998764

>KOG1374|consensus

Probab=99.95  E-value=1.4e-29  Score=192.15  Aligned_cols=94  Identities=35%  Similarity=0.746  Sum_probs=86.6

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeec--cCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFG--QSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~--~~ga   78 (99)
                      ||+++|+||||.++|.+....+.+.++-++||++..++.|+||||||||||+||+.+.+++++++|+++|+++.  +.||
T Consensus        21 fwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~~s~~ggGA  100 (448)
T KOG1374|consen   21 FWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIFLSDHGGGA  100 (448)
T ss_pred             HHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchhhcccCccceEEecCCCCc
Confidence            79999999999999998877777788999999999999999999999999999999999999999999999975  4799


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||.||. .|+++.|
T Consensus       101 GNNWA~GY~-~G~~~~e  116 (448)
T KOG1374|consen  101 GNNWASGYS-QGERVQE  116 (448)
T ss_pred             ccccccccc-cchhhHH
Confidence            999999976 4888764

>PLN00220 tubulin beta chain; Provisional

Probab=99.95  E-value=3.6e-29  Score=194.76  Aligned_cols=95  Identities=84%  Similarity=1.457  Sum_probs=87.7

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      ||+++|+||+|+++|.+....+.+.+++++||+|...++|+|||||||+||+||++++.++++++|++++++++++||||
T Consensus        20 ~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gagn   99 (447)
T PLN00220         20 FWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGN   99 (447)
T ss_pred             HHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccccccCccceEecccCCCC
Confidence            79999999999999988665555557889999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPV   95 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~   95 (99)
                      |||+|||+.|++++|
T Consensus       100 nwa~G~~~~g~~~~~  114 (447)
T PLN00220        100 NWAKGHYTEGAELID  114 (447)
T ss_pred             ccCceeecccHHHHH
Confidence            999999999998764

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=99.94  E-value=2e-28  Score=190.02  Aligned_cols=94  Identities=34%  Similarity=0.738  Sum_probs=84.6

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC--CC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~--ga   78 (99)
                      |||++|+||+|+++|.+...++.+.+++++||+|+.+++|+|||||||+||+||++|+.++++++|++++++++++  ||
T Consensus        19 ~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~ga   98 (431)
T cd02188          19 FWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGA   98 (431)
T ss_pred             HHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccccccCccceEeeccCCCc
Confidence            7999999999999998765544456789999999999999999999999999999999998999999999999998  99


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+||+ .|++++|
T Consensus        99 gnnwa~Gy~-~g~~~~d  114 (431)
T cd02188          99 GNNWASGYS-QGEEVQE  114 (431)
T ss_pred             cccHHHHHH-HHHHHHH
Confidence            999999966 5877654

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>KOG1376|consensus

Probab=99.94  E-value=3.7e-28  Score=183.56  Aligned_cols=95  Identities=39%  Similarity=0.755  Sum_probs=88.6

Q ss_pred             CHHHHHhHhCCCCCCCccCCCch--hhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      +||++|.||||+++|.++.+.+.  ..+.+++||+++..++++||++|||+||. |+++++++++.+|.|+++|.||++|
T Consensus        20 Cwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrtG~y~~lfHPeqlitGkedA   98 (407)
T KOG1376|consen   20 CWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRTGTYRQLFHPEQLITGKEDA   98 (407)
T ss_pred             hHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcccchhhccCchhccCcchHh
Confidence            69999999999999998765543  35689999999999999999999999999 9999999999999999999999999


Q ss_pred             CcccccccCCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPVP   96 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~~   96 (99)
                      +||+|+|||++|+|+++.
T Consensus        99 annyArghyt~g~e~id~  116 (407)
T KOG1376|consen   99 ANNYARGHYTIGKEIIDL  116 (407)
T ss_pred             hhhHHhhhhhcchhhhHH
Confidence            999999999999999863

>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.94  E-value=3.6e-28  Score=188.66  Aligned_cols=95  Identities=38%  Similarity=0.734  Sum_probs=86.6

Q ss_pred             CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      ||+++|+||+|+++|.+.....  .+++++++||+|+.+++|+|||||||+||++|++++.++++.+|++++++.+++||
T Consensus        19 ~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~   98 (434)
T cd02186          19 CWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA   98 (434)
T ss_pred             HHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccCccccccCccceeecCCCC
Confidence            7999999999999998755433  34678999999999999999999999999999999998889999999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|+++.|
T Consensus        99 gnnwa~Gy~~~G~~~~~  115 (434)
T cd02186          99 ANNFARGHYTIGKEIID  115 (434)
T ss_pred             CcccccccchhHHHHHH
Confidence            99999999999998764

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino

>PTZ00010 tubulin beta chain; Provisional

Probab=99.94  E-value=6.6e-28  Score=187.68  Aligned_cols=95  Identities=81%  Similarity=1.439  Sum_probs=86.8

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      ||+++|+||+|+++|.+....+.+.+++++||+|+..|+|+|||||||+||++|+.++.++++.+|++++++++++||||
T Consensus        20 ~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~gagN   99 (445)
T PTZ00010         20 FWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGN   99 (445)
T ss_pred             HHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchhhhcCccceeecccCCcc
Confidence            79999999999999987655444457889999999999999999999999999999999888899999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPV   95 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~   95 (99)
                      |||+|||+.|+++++
T Consensus       100 nwa~G~~~~g~~~~~  114 (445)
T PTZ00010        100 NWAKGHYTEGAELID  114 (445)
T ss_pred             ccccchhhhhHHHHH
Confidence            999999999998764

>PLN00222 tubulin gamma chain; Provisional

Probab=99.94  E-value=9.8e-28  Score=187.18  Aligned_cols=94  Identities=30%  Similarity=0.656  Sum_probs=83.9

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC--CC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~--ga   78 (99)
                      ||+++|+||+|+++|.+....+.+++++++||+|+..++|+|||||||+||+||++|+.++++++|++++++++++  ||
T Consensus        21 ~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~ga  100 (454)
T PLN00222         21 FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGA  100 (454)
T ss_pred             HHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccccccCccceeecccCCCc
Confidence            7999999999999998765544456789999999999999999999999999999999988999999999999996  69


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+||+ .|+++.|
T Consensus       101 gnn~a~Gy~-~g~~~~d  116 (454)
T PLN00222        101 GNNWASGYH-QGEQVEE  116 (454)
T ss_pred             ccchHHhHH-HHHHHHH
Confidence            999999965 6877654

>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.93  E-value=5.5e-27  Score=181.60  Aligned_cols=95  Identities=86%  Similarity=1.448  Sum_probs=86.2

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      ||+++|+||+|+++|.+....+...+++++||+|+.+++|+|||||||+||++|++++.++++.+|++++++.+++||||
T Consensus        19 ~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~gagn   98 (425)
T cd02187          19 FWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGN   98 (425)
T ss_pred             HHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcccceecCcceeeccCCCCC
Confidence            79999999999999987544444457889999999999999999999999999999998888899999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPV   95 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~   95 (99)
                      |||+|||+.|++++|
T Consensus        99 nwa~G~~~~G~~~~e  113 (425)
T cd02187          99 NWAKGHYTEGAELID  113 (425)
T ss_pred             ccCccchhhcHHHHH
Confidence            999999999998764

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-

>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.93  E-value=5.2e-27  Score=182.69  Aligned_cols=91  Identities=24%  Similarity=0.475  Sum_probs=82.3

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCC--CccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF--GQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~--~~lf~~~~~i~~~~ga   78 (99)
                      ||+++|+||+++++|.+.    .+.+++++||+|...++|+|||||||+||+||++|+++..  +++|++++++++++||
T Consensus        18 fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~~ga   93 (446)
T cd02189          18 LFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGS   93 (446)
T ss_pred             HHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCcccccCchheeecCCCC
Confidence            799999999999998763    2357889999999999999999999999999999998653  4799999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|+++.|
T Consensus        94 gnnwa~Gy~~~g~~~~~  110 (446)
T cd02189          94 GNNWAYGYYVHGPQIKE  110 (446)
T ss_pred             ccchhccccccchhhHH
Confidence            99999999999998865

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.

>PTZ00387 epsilon tubulin; Provisional

Probab=99.93  E-value=7.3e-27  Score=182.72  Aligned_cols=88  Identities=33%  Similarity=0.630  Sum_probs=78.4

Q ss_pred             CHHHHHhHhC-CCCCCCccCCCchhhccccceeeecC-----CC--ceeceEEEecCCCCcccccccCCCCccccCCcee
Q psy14218          1 FWEIISDEHG-IDPTGAYHGDSDLQLERINVYYNEAS-----GS--KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFV   72 (99)
Q Consensus         1 fWe~~~~EH~-i~~~g~~~~~~~~~~~~~~~fF~e~~-----~~--~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i   72 (99)
                      ||+++|+||+ |+++|.+       ++++++||++.+     .+  +|+|||||||+||+||++|+.++++++|++++++
T Consensus        20 fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~~~~f~~~~~i   92 (465)
T PTZ00387         20 FWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFV   92 (465)
T ss_pred             HHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCcccccCccccc
Confidence            7999999999 8898865       367899998533     23  4999999999999999999998899999999999


Q ss_pred             eccCCCCcccccccCCCCCCCCC
Q psy14218         73 FGQSGAGNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        73 ~~~~gagnNwA~Gyy~~g~~~~~   95 (99)
                      ++++|||||||+|||+.|+++.|
T Consensus        93 ~~~~GaGNnwa~G~~~~g~~~~d  115 (465)
T PTZ00387         93 SDVSGAGNNWAVGHMEYGDKYID  115 (465)
T ss_pred             ccCCCCCCCcCCCcccccHHHHH
Confidence            99999999999999999988754

>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins

Probab=99.81  E-value=9.8e-22  Score=140.10  Aligned_cols=89  Identities=45%  Similarity=0.886  Sum_probs=78.6

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      ||+++|+||+|+++    .......++.++||++...++++||+|+||+||++|++++..+.+++|.+++++.+++|+||
T Consensus        18 ~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~~~~~~~~~~g~g~   93 (216)
T PF00091_consen   18 FWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFDPNNLISGQEGSGN   93 (216)
T ss_dssp             HHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESCGGGEEETSSTSTT
T ss_pred             HHHHHHHhhccccc----cccccccccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            69999999999998    22334457889999999999999999999999999999998887899999999999999999


Q ss_pred             ccccccCCCCCCC
Q psy14218         81 NWAKGHYTEPIPL   93 (99)
Q Consensus        81 NwA~Gyy~~g~~~   93 (99)
                      ||++||+..|+++
T Consensus        94 n~~~G~~~~~~~~  106 (216)
T PF00091_consen   94 NWAVGYYTFGEEA  106 (216)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             ccccccccccccc
Confidence            9999998655443

These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.77  E-value=4.4e-20  Score=141.46  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=52.9

Q ss_pred             eeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCC
Q psy14218         40 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        40 ~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~   95 (99)
                      ++|||||||+||++|++++.++++++|++++++.++.|||||||+|||+.|+++.|
T Consensus        28 ~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~   83 (379)
T cd02190          28 LKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYID   83 (379)
T ss_pred             cCCcceeccCChhHHHHHhcCccccccCcccccccCCCCCCCccceeeccchhHHH
Confidence            78999999999999999999888999999999999999999999999999988754

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>KOG1375|consensus

Probab=99.24  E-value=2.9e-12  Score=97.42  Aligned_cols=67  Identities=84%  Similarity=1.315  Sum_probs=61.2

Q ss_pred             CchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCCC
Q psy14218         21 SDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVP   96 (99)
Q Consensus        21 ~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~~   96 (99)
                      ++.|.++++++|++...++|+||||++||||.+++.|..++++.+|+|++   +++|      +|||+.|+++.|.
T Consensus         4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds   70 (369)
T KOG1375|consen    4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS   70 (369)
T ss_pred             ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc
Confidence            55778999999999999999999999999999999999999999999999   5544      8999999998874

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.21  E-value=2.8e-12  Score=98.30  Aligned_cols=51  Identities=41%  Similarity=0.804  Sum_probs=47.7

Q ss_pred             EEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCC
Q psy14218         45 ILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        45 v~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~   95 (99)
                      ||||+||++|++++..+.+.+|++++++.+++|+|||||+||++.|+++.|
T Consensus        23 i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e   73 (382)
T cd06059          23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELID   73 (382)
T ss_pred             HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHH
Confidence            999999999999999888899999999999999999999999999977653

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain

Probab=99.05  E-value=9e-12  Score=87.46  Aligned_cols=56  Identities=41%  Similarity=0.756  Sum_probs=50.2

Q ss_pred             ceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCC
Q psy14218         30 VYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT   88 (99)
Q Consensus        30 ~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~   88 (99)
                      .||.+.   ++.||+|++|+||++++.+...+.+.+|++.+.+.++.++||||++|||+
T Consensus         3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~   58 (192)
T smart00864        3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGA   58 (192)
T ss_pred             EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCC
Confidence            466653   77899999999999999998777888999999999999999999999998

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.

>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

Probab=98.69  E-value=3e-09  Score=79.86  Aligned_cols=50  Identities=42%  Similarity=0.708  Sum_probs=46.2

Q ss_pred             EEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCC
Q psy14218         45 ILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLP   94 (99)
Q Consensus        45 v~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~   94 (99)
                      |+||+|+++|+.++..+...+|++.+.+.++.||||||++||+..|++..
T Consensus        23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~   72 (328)
T cd00286          23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQ   72 (328)
T ss_pred             heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHH
Confidence            99999999999999888888999999999999999999999999887544

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.

>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=96.32  E-value=0.0015  Score=49.96  Aligned_cols=43  Identities=21%  Similarity=0.421  Sum_probs=34.7

Q ss_pred             ceeceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218         39 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH   86 (99)
Q Consensus        39 ~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy   86 (99)
                      +|+||+|+||+|+..++.++.     ...++.++.++     .|+|+||..|.
T Consensus        29 ~~~~~~iavntD~~~L~~l~~-----~~~~~ki~~g~~~t~G~GaG~~~~~G~   76 (349)
T cd02202          29 GYCVGALAINTAKNDLKGLKH-----IPAEDRILIGQSEVKGHGVGADRELGA   76 (349)
T ss_pred             ccceeEEEEECCHHHHHhhhc-----CCCCCEEEecCcccCCCCCCCChHHHH
Confidence            688999999999999988754     34577788876     38999998774

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []

Probab=86.08  E-value=0.54  Score=30.49  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=18.9

Q ss_pred             cccceeeecC----CCceeceEEEecCCC
Q psy14218         27 RINVYYNEAS----GSKYVPRAILVDLEP   51 (99)
Q Consensus        27 ~~~~fF~e~~----~~~~~pRav~iD~ep   51 (99)
                      ..+++|.+..    .-.|.||+|++|+--
T Consensus        39 ~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg   67 (115)
T PF10644_consen   39 DHDVLFREGITLSGTVTYTPRLLLFDLKG   67 (115)
T ss_pred             CCceEEecccCcCCCeeECCcEEEEecCC
Confidence            4578998753    347899999999754

This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
4i4t_B	445	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		5e-50
1ffx_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		5e-50
2xrp_A	445	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		5e-50
3ryc_B	445	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		6e-50
3du7_B	445	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		6e-50
4f61_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		6e-50
1tub_B	427	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		6e-50
1z2b_B	445	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		6e-50
4drx_B	431	Gtp-Tubulin In Complex With A Darpin Length = 431		9e-49
4ffb_B	463	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		2e-33
4i4t_A	450	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		6e-18
4drx_A	437	Gtp-Tubulin In Complex With A Darpin Length = 437		6e-18
3hkb_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		6e-18
3ryc_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		6e-18
3du7_A	449	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		7e-18
1sa0_A	451	Tubulin-Colchicine: Stathmin-Like Domain Complex Le		7e-18
1ffx_A	451	Tubulin:stathmin-Like Domain Complex Length = 451		7e-18
1tub_A	440	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		7e-18
2xrp_B	452	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		7e-18
1jff_A	451	Refined Structure Of Alpha-Beta Tubulin From Zinc-I		7e-18
1z2b_A	448	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		8e-18
4ffb_A	447	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		2e-16
3cb2_A	475	Crystal Structure Of Human Gamma-Tubulin Bound To G		4e-13
1z5v_A	474	Crystal Structure Of Human Gamma-Tubulin Bound To G		4e-13
2btq_B	426	Structure Of Btubab Heterodimer From Prosthecobacte		7e-13
2bto_A	473	Structure Of Btuba From Prosthecobacter Dejongeii L		8e-11

>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  192 bits (487), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427

Iteration: 1
 Score =  191 bits (486), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  191 bits (486), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431

Iteration: 1
 Score =  187 bits (476), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPL 93
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE   L
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112

>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 72/93 (77%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE I  EHG+D  G YHG  D+Q ER+NVY+NEAS  K+VPR+I VDLEPGT+DAVR+ 
Sbjct: 20  FWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNS 79
Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPL 93
             G +FRPDN++FGQS AGN WAKGHYTE   L
Sbjct: 80  AIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAEL 112

>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLISGKEDAANNYARGHYT 109

>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+
Sbjct: 21  WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           G + Q+F P+  + G+  A NN+A+GHYT
Sbjct: 81  GTYRQLFHPEQLITGKEDAANNYARGHYT 109

>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 2   WEIISDEHGIDPTGAYHGDSDLQL-----ERINVYYNEASGSKYVPRAILVDLEPGTMDA 56
           WE+ S EHGI P G  H +  L       E  + +++E    K+VPRAI VDLEP  +D 
Sbjct: 21  WELYSLEHGIKPDG--HLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDE 78
Query: 57  VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
           VR+GP+  +F P+  + G+  A NN+A+GHYT
Sbjct: 79  VRNGPYKDLFHPEQLISGKEDAANNYARGHYT 110

>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FW+ +  EHGI P       +    +R +V++ +A    Y+PRA+L+DLEP  + ++ + 
Sbjct: 21  FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNS 80
Query: 61  PFGQIFRPDNFVFGQS--GAGNNWAKG 85
           P+ +++ P+N    +   GAGNNWA G
Sbjct: 81  PYAKLYNPENIYLSEHGGGAGNNWASG 107

>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FW+ +  EHGI P       +    +R +V++ +A    Y+PRA+L+DLEP  + ++ + 
Sbjct: 21  FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNS 80
Query: 61  PFGQIFRPDNFVFGQS--GAGNNWAKG 85
           P+ +++ P+N    +   GAGNNWA G
Sbjct: 81  PYAKLYNPENIYLSEHGGGAGNNWASG 107

>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1   FWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           FW +   EHG+   G    G +      + V++++    KYVPRA+LVDLEPG +  +  
Sbjct: 20  FWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEG 79
Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           G   Q+F   + V    GA NNWA+G+  E
Sbjct: 80  GDMSQLFDESSIVRKIPGAANNWARGYNVE 109

>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAV 57
           FW+ +  EHGIDP               + +++   E+S   YVPRAI+VDLEP  +D V
Sbjct: 22  FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV 81
Query: 58  RSGPFGQIFRPDNFVFGQSGAGNNWAKGH 86
           ++   G +F P N +    GAG N+A G+
Sbjct: 82  KATS-GSLFNPANLISRTEGAGGNFAVGY 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	3e-51
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	1e-48
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	2e-44
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	3e-44
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	4e-42

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445

 Score =  165 bits (420), Expect = 3e-51
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451

 Score =  158 bits (402), Expect = 1e-48
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVR 58
            WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR
Sbjct: 20  CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79

Query: 59  SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           +G + Q+F P+  + G+  A NN+A+GHYT 
Sbjct: 80  TGTYRQLFHPEQLITGKEDAANNYARGHYTI 110

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426

 Score =  147 bits (372), Expect = 2e-44
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 1   FWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
           FW +   EHG+   G    G +      + V++++    KYVPRA+LVDLEPG +  +  
Sbjct: 20  FWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEG 79

Query: 60  GPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           G   Q+F   + V    GA NNWA+G+  E
Sbjct: 80  GDMSQLFDESSIVRKIPGAANNWARGYNVE 109

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475

 Score =  147 bits (374), Expect = 3e-44
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FW+ +  EHGI P       +    +R +V++ +A    Y+PRA+L+DLEP  + ++ + 
Sbjct: 21  FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNS 80

Query: 61  PFGQIFRPDNFVFGQ--SGAGNNWAKGHYTE 89
           P+ +++ P+N    +   GAGNNWA G +++
Sbjct: 81  PYAKLYNPENIYLSEHGGGAGNNWASG-FSQ 110

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473

 Score =  142 bits (359), Expect = 4e-42
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAV 57
           FW+ +  EHGIDP               + +++   E+S   YVPRAI+VDLEP  +D V
Sbjct: 22  FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV 81

Query: 58  RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           ++   G +F P N +    GAG N+A G+   
Sbjct: 82  KATS-GSLFNPANLISRTEGAGGNFAVGYLGA 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	100.0
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	100.0
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	99.95
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	99.94
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	99.94
3m89_A	427	FTSZ/tubulin-related protein; partition, TUBZ, GTP	97.77
2r75_1	338	Cell division protein FTSZ; GTPase, tubulin-like,	93.94
1ofu_A	320	FTSZ, cell division protein FTSZ; bacterial cell d	90.7
2vaw_A	394	FTSZ, cell division protein FTSZ; bacterial cell d	89.52
1w5f_A	353	Cell division protein FTSZ; complete proteome, GTP	89.31
1rq2_A	382	Cell division protein FTSZ; cell cycle, tubulin, G	87.23
2vxy_A	382	FTSZ, cell division protein FTSZ; GTP-binding, nuc	86.37
2vap_A	364	FTSZ, cell division protein FTSZ homolog 1; polyme	85.74

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...

Probab=100.00  E-value=6.2e-37  Score=237.06  Aligned_cols=95  Identities=89%  Similarity=1.489  Sum_probs=91.7

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      |||+||+||||+++|++.++++.+++++++||+|+..|+|+||||||||||+||++|++++++.||+|+++|++|+||||
T Consensus        20 ~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~~~~lf~p~~~i~g~~gAgN   99 (445)
T 3ryc_B           20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN   99 (445)
T ss_dssp             HHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTSTTGGGSCGGGEEECSSCCTT
T ss_pred             HHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhcccccceecccceEEccccccC
Confidence            79999999999999999988888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPV   95 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~   95 (99)
                      |||+|||+.|+++.|
T Consensus       100 N~A~G~yt~G~e~~d  114 (445)
T 3ryc_B          100 NWAKGHYTEGAELVD  114 (445)
T ss_dssp             CHHHHHHSHHHHHHH
T ss_pred             CccccchhhhHHHHH
Confidence            999999999998764

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...

Probab=100.00  E-value=1.2e-36  Score=235.82  Aligned_cols=95  Identities=39%  Similarity=0.766  Sum_probs=86.8

Q ss_pred             CHHHHHhHhCCCCCCCccCCCch--hhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      |||+||+||||++||++.++++.  +++++++||+|+..|+|+||||||||||+||++|+++++++||+|+++|++|+||
T Consensus        20 ~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~g~~~~lf~p~~~i~gk~gA   99 (451)
T 3ryc_A           20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDA   99 (451)
T ss_dssp             HHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHHSTTTTTSCGGGEEECSSCC
T ss_pred             HHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeeecccccccCHHHeeeccccc
Confidence            79999999999999999877654  4789999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|+++.|
T Consensus       100 gNNwA~G~yt~G~e~~d  116 (451)
T 3ryc_A          100 ANNYARGHYTIGKEIID  116 (451)
T ss_dssp             TTCHHHHHHTSHHHHHH
T ss_pred             cCCCCeeecccchHhHH
Confidence            99999999999998764

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}

Probab=99.95  E-value=7.8e-30  Score=196.45  Aligned_cols=95  Identities=35%  Similarity=0.670  Sum_probs=73.3

Q ss_pred             CHHHHHhHhCCCCCCCccCCC-chhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAG   79 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~-~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gag   79 (99)
                      ||+++|+||||+++|.+.+++ +.+++++++||+|+..++|+||||+|||||++|+.++.++++.+|+|+++++|++|||
T Consensus        20 fW~~~~~ehgi~~~g~~~~~~~~~~~~~~~~fF~e~~~~~yvPRav~vDle~~~l~~i~~~~~~~lf~p~~i~~g~~gAg   99 (426)
T 2btq_B           20 FWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAA   99 (426)
T ss_dssp             HHHHHHHHHTBCTTSBBCC-------CCCTTTEEEEETTEEEECEEEEEECC------------CCCCTTSEEECCSCCT
T ss_pred             HHHHHHHHcCCCCCCCccCcccccccccccceeeecCCCceeeeeEEEecCccccccccccccccccCcccccccccCcc
Confidence            799999999999999988766 5667899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCC
Q psy14218         80 NNWAKGHYTEPIPLPV   95 (99)
Q Consensus        80 nNwA~Gyy~~g~~~~~   95 (99)
                      ||||+|||+.|+++.+
T Consensus       100 nn~a~G~~~~G~~~~e  115 (426)
T 2btq_B          100 NNWARGYNVEGEKVID  115 (426)
T ss_dssp             TCHHHHHTHHHHHHHH
T ss_pred             CcccccccchhHHHHH
Confidence            9999999999987653

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*

Probab=99.94  E-value=5.7e-29  Score=193.74  Aligned_cols=93  Identities=37%  Similarity=0.663  Sum_probs=85.0

Q ss_pred             CHHHHHhHhCCCCC-CCccCCCchhhccccceee---ecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC
Q psy14218          1 FWEIISDEHGIDPT-GAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS   76 (99)
Q Consensus         1 fWe~~~~EH~i~~~-g~~~~~~~~~~~~~~~fF~---e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~   76 (99)
                      ||+++|+||||+++ |++.++++. ++++++||+   |+..++|+||||+|||||++|+.++.++ +.+|.|+++++++.
T Consensus        22 ~We~~~~Ehgi~~~~g~~~~~~~~-~~~~~~fF~~~~e~~~~~~vpRav~vDlep~vi~~i~~~~-~~lf~p~~~it~~~   99 (473)
T 2bto_A           22 FWKTVCLEHGIDPLTGQTAPGVAP-RGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTE   99 (473)
T ss_dssp             HHHHHHHHHTCCTTTCCCSSSCCC-SSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHHHHS-TTCSCGGGEEECSS
T ss_pred             HHHHHHHhcCCCCCCCeecCCCcc-cccccceecccccccCCceeeeeeEecCcchhhhhhhccc-cccccccceEeccc
Confidence            79999999999999 998876665 788999999   9999999999999999999999999988 99999999999999


Q ss_pred             CCCcccccccCCCCCCCCC
Q psy14218         77 GAGNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        77 gagnNwA~Gyy~~g~~~~~   95 (99)
                      |||||||+|||+.|+++.|
T Consensus       100 GAgnn~a~G~~~~G~~~~e  118 (473)
T 2bto_A          100 GAGGNFAVGYLGAGREVLP  118 (473)
T ss_dssp             CCTTCHHHHHTSHHHHHHH
T ss_pred             CCCCCcCCCcchhhHHHHH
Confidence            9999999999999987653

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*

Probab=99.94  E-value=1.2e-28  Score=192.11  Aligned_cols=93  Identities=32%  Similarity=0.763  Sum_probs=84.8

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC--CC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~--ga   78 (99)
                      ||+++|.||||+++|.+.+....+++++++||+|+..++|+||||||||||++|++|++++++.||+|++++++++  ||
T Consensus        21 fWe~~~~Ehgi~~~g~~~~~~~~~~~~~~vfF~e~~~~~yvPRavlvDLEp~vid~i~~~~~~~lf~p~~~i~g~~g~gA  100 (475)
T 3cb2_A           21 FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGA  100 (475)
T ss_dssp             HHHHHHHHTTBCTTSCBCTTCCTTSSCGGGTEEECTTSCEEECEEEEESSSHHHHHHHHSTTTTTSCGGGEEECCTTCCC
T ss_pred             HHHHHHHhcCCCCCCCCcCcccccccccceeeeecCCCceecceeEecCCcceeeeeccccccccCCccceeecccccCC
Confidence            7999999999999999876655567889999999999999999999999999999999999999999999999997  79


Q ss_pred             CcccccccCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLP   94 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~   94 (99)
                      |||||+|| +.|+++.
T Consensus       101 gnn~a~G~-~~g~e~~  115 (475)
T 3cb2_A          101 GNNWASGF-SQGEKIH  115 (475)
T ss_dssp             TTCHHHHH-HHHHHHH
T ss_pred             CCCchhhh-hhhHhhH
Confidence            99999995 6676543

>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*

Probab=97.77  E-value=6.1e-06  Score=63.60  Aligned_cols=49  Identities=12%  Similarity=-0.014  Sum_probs=30.1

Q ss_pred             CCceeceEEEecCCCCcccccccCCCCccccCCce-eeccCCCCcccccccCCCC
Q psy14218         37 GSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNF-VFGQSGAGNNWAKGHYTEP   90 (99)
Q Consensus        37 ~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~-i~~~~gagnNwA~Gyy~~g   90 (99)
                      .+++.+|+|+||+|+.+++.++..+.     ++.+ +.++.||||||++||+..|
T Consensus        68 ~g~~~~~~iavNtd~~dl~~L~~~~~-----~~~i~l~G~~GAG~np~~G~~~ag  117 (427)
T 3m89_A           68 NGTTCYPTLAVNFAESDMMHLQNIIK-----EDRIHFDGLKGAARTPSVVTDLFD  117 (427)
T ss_dssp             TSCBSCCEEEEESSGGGGTTCSSSCG-----GGEEEC-----------CHHHHHS
T ss_pred             cCCcCceEEEEECCHHHHHHHhcCCC-----cceEEecCCCCCCCCHHHHHHHhh
Confidence            46789999999999999998877663     3343 5688999999999998764

>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*

Probab=93.94  E-value=0.0089  Score=44.56  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             ceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218         42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH   86 (99)
Q Consensus        42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy   86 (99)
                      ++.|.+|+|+.+++.+..        ++.+..|+     .||||||+.|+
T Consensus        34 v~~ia~NTD~q~L~~~~a--------~~ki~iG~~~t~g~GAGnn~a~G~   75 (338)
T 2r75_1           34 VELYAINTDVQHLSTLKV--------PNKIQIGEKVTRGLGAGAKPEVGE   75 (338)
T ss_dssp             CEEEEEESBHHHHHTCCC--------SEEEECCHHHHTTBCCTTCHHHHH
T ss_pred             ceEEEEECCHHHHhcCCC--------CcEEEecCcccCCCCCCCChHHHH
Confidence            799999999999877543        34455554     89999999884

>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=90.70  E-value=0.07  Score=39.38  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=28.4

Q ss_pred             ceEEEecCCCCcccccccCCCCccccCCceeec-----cCCCCccccccc
Q psy14218         42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFG-----QSGAGNNWAKGH   86 (99)
Q Consensus        42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~-----~~gagnNwA~Gy   86 (99)
                      .+.+.+|+|.+.++.+..        ++.+..|     ..||||||+.|+
T Consensus        38 v~~i~~ntD~q~L~~~~a--------~~~i~iG~~~t~g~GAG~n~~~G~   79 (320)
T 1ofu_A           38 VEFICANTDAQALKNIAA--------RTVLQLGPGVTKGLGAGANPEVGR   79 (320)
T ss_dssp             EEEEEEESBTGGGSSCSC--------SEEEECCHHHHTTBCCCSCHHHHH
T ss_pred             CCEEEEcCCHHHHhcCCC--------CcEEEccCCccCCCCCCCCHHHHH
Confidence            589999999998877653        3445555     359999999985

>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=89.52  E-value=0.14  Score=38.99  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             ceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218         42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH   86 (99)
Q Consensus        42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy   86 (99)
                      .+.|.+++|.+.++.+..        ++.+..|+     .||||||+.|+
T Consensus        38 v~fia~NTD~q~L~~~~a--------~~ki~iG~~~t~G~GAG~n~~~G~   79 (394)
T 2vaw_A           38 VEFICANTDAQALKNIAA--------RTVLQLGPGVTKGLGAGANPEVGR   79 (394)
T ss_dssp             EEEEEEESCTTTTSSCSS--------SCEEECCHHHHSSSCCCSCHHHHH
T ss_pred             CCEEEecCCHHHHhcCCC--------CcEEEccccccCCCCCCCCHHHHH
Confidence            589999999998876543        44555553     69999999985

>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1

Probab=89.31  E-value=0.073  Score=39.88  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             ccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218         28 INVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH   86 (99)
Q Consensus        28 ~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy   86 (99)
                      ++.+......|   .+.+.+++|...++.+..        ++.+..|+     .||||||+.|+
T Consensus        37 vn~m~~~gi~g---v~~ia~nTD~q~L~~~~a--------~~~i~iG~~~t~G~GAG~n~~~G~   89 (353)
T 1w5f_A           37 INRMIEIGIHG---VEFVAVNTDLQVLEASNA--------DVKIQIGENITRGLGAGGRPEIGE   89 (353)
T ss_dssp             HHHHHHHCCTT---EEEEEEESCHHHHHTCCC--------SEEEECCTTTTTTSCCTTCHHHHH
T ss_pred             HHHHHHhCCCC---CCEEEEcCCHHHHhcCCC--------CcEEEccCcccCCCCCCCChHHHH
Confidence            34444433333   589999999988876543        34455554     59999999985

>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*

Probab=87.23  E-value=0.094  Score=39.74  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             ceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218         42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH   86 (99)
Q Consensus        42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy   86 (99)
                      .+.|.+|+|...++.+..        ++.+..|+     .||||||+.|+
T Consensus        38 v~fia~NTD~q~L~~~~a--------~~~i~iG~~~t~G~GAG~n~~~G~   79 (382)
T 1rq2_A           38 VEFIAINTDAQALLMSDA--------DVKLDVGRDSTRGLGAGADPEVGR   79 (382)
T ss_dssp             EEEEEEESCHHHHHHCCC--------SEEEECCTTTC-----CCCHHHHH
T ss_pred             CCEEEecCCHHHHhcCCC--------CcEEEecccccCCCCCCCChHHHH
Confidence            589999999988876542        33444543     59999999985

>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*

Probab=86.37  E-value=0.097  Score=39.68  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             ceEEEecCCCCcccccccCCCCccccCCceeec-----cCCCCccccccc
Q psy14218         42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFG-----QSGAGNNWAKGH   86 (99)
Q Consensus        42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~-----~~gagnNwA~Gy   86 (99)
                      .+.|.+|+|..+++.+..        ++.+..|     ..||||||+.|+
T Consensus        38 v~fia~NTD~q~L~~~~a--------~~ki~iG~~~t~G~GAGnn~a~G~   79 (382)
T 2vxy_A           38 VEYIAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGK   79 (382)
T ss_dssp             CEEEEEESBHHHHHTCCC--------SEEEECCHHHHTTBCCTTCHHHHH
T ss_pred             CCEEEEeCCHHHHhcCCC--------CcEEEecccccCCCCCCCChHHHH
Confidence            689999999988877653        2344444     459999999885

>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*

Probab=85.74  E-value=0.14  Score=38.49  Aligned_cols=35  Identities=17%  Similarity=0.408  Sum_probs=25.8

Q ss_pred             eEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCcccccc
Q psy14218         43 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKG   85 (99)
Q Consensus        43 Rav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~G   85 (99)
                      ..+.+++|.+.++.+..        ++.+..|+     .||||||++|
T Consensus        65 ~fia~NTD~q~L~~~~a--------~~ki~iG~~~t~G~GAGnn~a~G  104 (364)
T 2vap_A           65 KTVAINTDAQQLIRTKA--------DKKILIGKKLTRGLGAGGNPKIG  104 (364)
T ss_dssp             EEEEEESBHHHHHTSCC--------SEEEECCTTTTTTBCCTTCHHHH
T ss_pred             CEEEEcCcHHHHhcCCC--------CcEEEeccccccCCCCCCChHHH
Confidence            67889998888776543        33445543     5999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1tubb1	243	c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus	2e-40
d1tuba1	245	c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus	1e-32
d2btoa1	244	c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec	8e-29

>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  131 bits (330), Expect = 2e-40
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  111 bits (279), Expect = 1e-32
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVR 58
            WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR
Sbjct: 20  CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79

Query: 59  SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           +G + Q+F P+  + G+  A NN+A+GHYT 
Sbjct: 80  TGTYRQLFHPEQLITGKEDAANNYARGHYTI 110

>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

 Score =  101 bits (253), Expect = 8e-29
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAV 57
           FW+ +  EHGIDP               + +++   E+S   YVPRAI+VDLEP  +D V
Sbjct: 20  FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV 79

Query: 58  RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           ++   G +F P N +    GAG N+A G+   
Sbjct: 80  KA-TSGSLFNPANLISRTEGAGGNFAVGYLGA 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1tubb1	243	Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982	99.97
d1tuba1	245	Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98	99.97
d2btoa1	244	Tubulin alpha-subunit {Prosthecobacter dejongeii [	99.95

>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=6.8e-34  Score=204.13  Aligned_cols=95  Identities=89%  Similarity=1.488  Sum_probs=90.1

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN   80 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn   80 (99)
                      ||+++|+||+|+++|.+..+.+.+.+++++||+|...++|+|||||||+||+||+++++++++++|+++++|++++||||
T Consensus        20 fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~gagN   99 (243)
T d1tubb1          20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN   99 (243)
T ss_dssp             HGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSSSCCCCSSSCCCCTTCCCCS
T ss_pred             HHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCccccccCccceEEcccCccc
Confidence            79999999999999998887877889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q psy14218         81 NWAKGHYTEPIPLPV   95 (99)
Q Consensus        81 NwA~Gyy~~g~~~~~   95 (99)
                      |||+|||+.|+++.|
T Consensus       100 NwA~Gy~~~G~~~~d  114 (243)
T d1tubb1         100 NWAKGHYTEGAELVD  114 (243)
T ss_dssp             STHHHHTSHHHHHHH
T ss_pred             ceeeeeeccCHHHHH
Confidence            999999999987653

>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.5e-33  Score=201.45  Aligned_cols=95  Identities=39%  Similarity=0.741  Sum_probs=88.2

Q ss_pred             CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA   78 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga   78 (99)
                      ||+++|+||+|++||.+..++.  .+++++++||+|...++|+|||||||+||+||++++.++++++|++++++++++||
T Consensus        20 ~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~~~~~~~f~~~~~i~~~~gs   99 (245)
T d1tuba1          20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDA   99 (245)
T ss_dssp             HHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSGGGCSCCCCSSSEEECCSCC
T ss_pred             HHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeeccCcchhccCccccccCCCCc
Confidence            7999999999999998765543  35788999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCCCCCCC
Q psy14218         79 GNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        79 gnNwA~Gyy~~g~~~~~   95 (99)
                      |||||+|||+.|+++.|
T Consensus       100 gNNwA~Gy~~~G~~~~d  116 (245)
T d1tuba1         100 ANNYARGHYTIGKEIID  116 (245)
T ss_dssp             CCSSSTTTTSHHHHTTH
T ss_pred             ccchHhhhhccchhhHH
Confidence            99999999999998764

>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

Probab=99.95  E-value=6.4e-31  Score=188.63  Aligned_cols=94  Identities=35%  Similarity=0.626  Sum_probs=81.2

Q ss_pred             CHHHHHhHhCCCCCCCccCCCchhhccccceee---ecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCC
Q psy14218          1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSG   77 (99)
Q Consensus         1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~---e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~g   77 (99)
                      ||++||+||+|++.+........+.+++++||.   |+..++|+|||||||+||+||++++++ .+++|+|+++|++++|
T Consensus        20 fw~~l~~EH~i~~~~~~~~~~~~~~~~~~~ff~~~~e~~~~~~~pRavliD~Ep~vi~~~~~~-~~~~f~~~~~i~~~~g   98 (244)
T d2btoa1          20 FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEG   98 (244)
T ss_dssp             HHHHHHHHHTCCTTTCCCSSSCCCSSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHHHH-STTCSCGGGEEECSSC
T ss_pred             HHHHHHHHhCCCCCCCcCCCcccccCCccccccccccccCCCcccceEEEcCCcchhhhhccc-cccccCcccccccccc
Confidence            799999999999988766555555677888886   778899999999999999999998764 5899999999999999


Q ss_pred             CCcccccccCCCCCCCCC
Q psy14218         78 AGNNWAKGHYTEPIPLPV   95 (99)
Q Consensus        78 agnNwA~Gyy~~g~~~~~   95 (99)
                      ||||||+|||+.|+++.|
T Consensus        99 sgnNwa~Gy~~~G~~~~d  116 (244)
T d2btoa1          99 AGGNFAVGYLGAGREVLP  116 (244)
T ss_dssp             CTTCHHHHHTSHHHHHHH
T ss_pred             cccchhhhcchhHHHHHH
Confidence            999999999999988654