Psyllid ID: psy14223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MQACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqacrgerasdkeergpgdkeergpgdkkargpgdkeergpgdkeergpgdeeergpgdkekrgpgdkeergpgdkekrgpgdkeergpgdkeergpgdrekrgpgdkeergpgdkekrgpgdkekrgpgdkeergpgdkeergpgdkeergqgdkekrgpgdkeerapgglv
Flexible Loop (DISEMBL)
mqacrgerasdkeergpgdkeergpgdkkargpgdkeergpgdkeergpgdeeergpgdkekrgpgdkeergpgdkekrgpgdkeergpgdkeergpgdrekrgpgdkeergpgdkekrgpgdkekrgpgdkeergpgdkeergpgdkeergqgdkekrgpgdkeerapgglv
Low Complexity Region (SEG)
MQACRGERASDKEERGPGDKEERGPGDKKARGPgdkeergpgdkeergpgdeeergpgdkekrgPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV
Disordered region (IsUnstruct)
*****************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
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Disordered Region (DISEMBL)
*****************************************************************************************************************************************************************************
Disordered Region (DISPRO)
*****************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q68DN1	1984	Uncharacterized protein C	yes	N/A	0.843	0.073	0.189	2e-15

>sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sapiens GN=C2orf16 PE=2 SV=3

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 63/153 (41%)

Query: 12   KEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEER 71
            +  RGP ++    P +++ R P  +  RGP ++    P     R P  +  R P ++   
Sbjct: 1676 RSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHH 1735

Query: 72   GPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGD 131
             P ++    P ++    P ++    P +R    P ++  R P ++    P +K    P +
Sbjct: 1736 SPSERSHHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSE 1795

Query: 132  KEERGPGDKEERGPGDKEERGQGDKEKRGPGDK 164
            +    P ++    P ++      ++  R P ++
Sbjct: 1796 RSHHSPSERRRHSPLERSRHSLLERSHRSPSER 1828

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
307210912	189	Stress protein DDR48 [Harpegnathos salta	0.901	0.825	0.337	6e-22
221060662	677	hypothetical protein, conserved in Plasm	0.612	0.156	0.310	5e-21
119597552	1032	hCG1806822 [Homo sapiens]	0.774	0.129	0.373	3e-20
147901845	705	serpin peptidase inhibitor, clade F (alp	0.872	0.214	0.463	1e-19
156368065	152	predicted protein [Nematostella vectensi	0.867	0.986	0.348	5e-19
21740062	845	hypothetical protein [Homo sapiens]	0.907	0.185	0.217	9e-18
52545606	954	hypothetical protein [Homo sapiens] gi|1	0.907	0.164	0.217	1e-17
268575306	110	Hypothetical protein CBG00004 [Caenorhab	0.630	0.990	0.440	1e-17
332243340	2027	PREDICTED: uncharacterized protein C2orf	0.907	0.077	0.243	2e-17
83592099	433	hypothetical protein Rru_A0760 [Rhodospi	0.930	0.371	0.327	2e-17

>gi|307210912|gb|EFN87242.1| Stress protein DDR48 [Harpegnathos saltator]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%)

Query: 13  EERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERG 72
           EER   + EER   + + R   + EER   + EER   ++EER   + E+R   + EER 
Sbjct: 6   EERASANDEERASANDEERASANDEERASANDEERASANDEERASANDEERASANDEERA 65

Query: 73  PGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK 132
             + E+R   + EER   + EER   + E+R   + EER   + E+R   + E+R   + 
Sbjct: 66  SANDEERASANDEERASANDEERASANDEERASANDEERASANDEERASANDEERASAND 125

Query: 133 EERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
           EER   + EER   + EER   + E+R   + EERA 
Sbjct: 126 EERASANDEERASANDEERASANDEERASANDEERAS 162

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221060662|ref|XP_002260976.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193811050|emb|CAQ42948.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 67/158 (42%)

Query: 9   ASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDK 68
             DK +    DK +R   D+      DK +R   D+ +R   D+ +R   DK  R   DK
Sbjct: 215 LLDKSDESLFDKSDRNLVDRSDDNLLDKSDRNLIDRYDRNVIDKFDRNVLDKFDRNVLDK 274

Query: 69  EERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRG 128
            +R   DK  R   DK  R   DK +R   D+  R   DK +R   DK  R   D+  R 
Sbjct: 275 FDRNVVDKFNRNVVDKFNRNVVDKFDRNVVDKFNRNVVDKFDRNVLDKFDRNVVDRFNRN 334

Query: 129 PGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEE 166
             D+  R   DK  R   DK +R   D+  R   D+ +
Sbjct: 335 VVDRFNRNVVDKFNRNVVDKFDRNVLDRYNRNVLDRSD 372

Source: Plasmodium knowlesi strain H

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|119597552|gb|EAW77146.1| hCG1806822 [Homo sapiens]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 56/150 (37%)

Query: 13  EERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERG 72
              GPG     GPG     GPG     GPG     GPG     GPG     GPG     G
Sbjct: 45  IVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSG 104

Query: 73  PGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK 132
           PG     GPG     GPG     GPG     GPG     GPG     GPG     GPG  
Sbjct: 105 PGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKA 164

Query: 133 EERGPGDKEERGPGDKEERGQGDKEKRGPG 162
              GPG     GPG     G G     GPG
Sbjct: 165 IVSGPGKAIVSGPGKAIVSGLGKAIVSGPG 194

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147901845|ref|NP_001087821.1| serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 precursor [Xenopus laevis] gi|51704159|gb|AAH81282.1| MGC86518 protein [Xenopus laevis]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 99/151 (65%)

Query: 14  ERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGP 73
           E GP +K E+GP +    GP +K E GP +K E GP ++ E GP +K ++GP +K E GP
Sbjct: 134 EEGPDEKLEKGPDENLEEGPDEKLEEGPDEKLEEGPDEKLEEGPDEKLEKGPDEKPEEGP 193

Query: 74  GDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKE 133
            +K ++GP +K E+GP +K E+GP ++ + G  +K E GP DK + GP DK + G  DK 
Sbjct: 194 DEKLEKGPDEKLEKGPDEKLEKGPDEKLEEGSDEKLEEGPHDKLEEGPHDKLEEGLHDKL 253

Query: 134 ERGPGDKEERGPGDKEERGQGDKEKRGPGDK 164
           E+GP DK E+GP DK E+G  DK ++GP DK
Sbjct: 254 EKGPHDKLEKGPHDKLEKGPHDKLEKGPHDK 284

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156368065|ref|XP_001627517.1| predicted protein [Nematostella vectensis] gi|156214429|gb|EDO35417.1| predicted protein [Nematostella vectensis]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 56/152 (36%), Gaps = 2/152 (1%)

Query: 12  KEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEER 71
           K    PG K    PG K+   PG K    PG K    PG +    PG K    PG K   
Sbjct: 1   KRLLAPGVKRLLAPGLKRLLAPGVKRLLAPGVKRLLVPGVKLVLAPGVKRLLAPGVKRLL 60

Query: 72  GPGDKEKRGPGDKEERGPGDKEERGPGDREKR--GPGDKEERGPGDKEKRGPGDKEKRGP 129
            P  K    PG K    PG K    PG + KR   PG K    PG K    PG K    P
Sbjct: 61  APKVKCLLAPGVKRLLAPGVKRLLAPGVKLKRLLAPGVKRLLAPGVKRLLAPGVKRLLAP 120

Query: 130 GDKEERGPGDKEERGPGDKEERGQGDKEKRGP 161
             K    PG K    PG K     G K    P
Sbjct: 121 RVKRLLAPGVKRLLAPGVKRLLAPGVKRLLVP 152

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|21740062|emb|CAD39047.1| hypothetical protein [Homo sapiens]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 67/161 (41%)

Query: 10  SDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKE 69
           S +  RGP  +    P ++  R P ++  R P ++  R P     RGP ++    P ++ 
Sbjct: 495 SQRSHRGPSQRRHHSPSERSHRSPSERSHRSPSERRHRSPSQRSHRGPSERSHCSPSERR 554

Query: 70  ERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGP 129
            R P  +  RGP ++    P  +  R P  R  R P ++    P ++    P ++    P
Sbjct: 555 HRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSERRHHSP 614

Query: 130 GDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
            ++    P ++    P ++  R   ++    P +K   +P 
Sbjct: 615 SERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPS 655

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|52545606|emb|CAB66832.2| hypothetical protein [Homo sapiens] gi|141794864|gb|AAI15377.1| C2orf16 protein [Homo sapiens]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 67/161 (41%)

Query: 10  SDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKE 69
           S +  RGP  +    P ++  R P ++  R P ++  R P     RGP ++    P ++ 
Sbjct: 604 SQRSHRGPSQRRHHSPSERSHRSPSERSHRSPSERRHRSPSQRSHRGPSERSHCSPSERR 663

Query: 70  ERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGP 129
            R P  +  RGP ++    P  +  R P  R  R P ++    P ++    P ++    P
Sbjct: 664 HRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSERRHHSP 723

Query: 130 GDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
            ++    P ++    P ++  R   ++    P +K   +P 
Sbjct: 724 SERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPS 764

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|268575306|ref|XP_002642632.1| Hypothetical protein CBG00004 [Caenorhabditis briggsae]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 62/109 (56%)

Query: 53  EERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERG 112
           E   PG +E   PG +E R PG +E R PG++E R  G +E R PG +E   PG +E R 
Sbjct: 2   ESMNPGIQESMNPGIQESRNPGIQESRNPGNQESRNSGIQEYRNPGIQESMNPGIEETRN 61

Query: 113 PGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGP 161
           PG  E   PG +E R PG +E R PG +E R  G  E R +G++E R P
Sbjct: 62  PGIHESMNPGIQEFRNPGIQEFRNPGIQESRNTGIHESRNRGNQESRNP 110

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|332243340|ref|XP_003270836.1| PREDICTED: uncharacterized protein C2orf16 homolog [Nomascus leucogenys]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 3/160 (1%)

Query: 14   ERGPGDKEERG---PGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEE 70
            ER      ERG   P  +  R P  +    P +     P ++  R P ++    P +K  
Sbjct: 1619 ERSCHSLSERGLRSPSQRSHRSPSQRSHHSPSEIRHHSPSEKSHRSPSERSHHSPSEKSH 1678

Query: 71   RGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPG 130
            R P +   R P ++  R P ++  R P  R +  P ++  R P D+  R P  +  RGP 
Sbjct: 1679 RSPSETSHRSPSERRHRSPSERRHRSPSQRSRPSPSERRHRRPSDRSHRSPAQRSHRGPS 1738

Query: 131  DKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
            ++    P ++    P ++  R   D+    P ++  R+P 
Sbjct: 1739 ERRHHSPSERSHHSPSERRHRISYDRRHHSPSERRHRSPS 1778

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|83592099|ref|YP_425851.1| hypothetical protein Rru_A0760 [Rhodospirillum rubrum ATCC 11170] gi|83575013|gb|ABC21564.1| hypothetical protein Rru_A0760 [Rhodospirillum rubrum ATCC 11170]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 12  KEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGP------ 65
              RGP     RGP     RGP     RGP     RGP     RGP     RGP      
Sbjct: 133 VSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPG 192

Query: 66  ----------GDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGD 115
                       +  RGP     RGP     RGP     RGP     RGP     RGP  
Sbjct: 193 QEASSALRNEAAQSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFA 252

Query: 116 KEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGL 172
              RGP     RGP     RGP     RGP     RG      RGP     R P  +
Sbjct: 253 VSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAVSPRGPFAV 309

Source: Rhodospirillum rubrum ATCC 11170

Species: Rhodospirillum rubrum

Genus: Rhodospirillum

Family: Rhodospirillaceae

Order: Rhodospirillales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
RGD|1560136	572	Rpgr "retinitis pigmentosa GTP	0.606	0.183	0.391	9.6e-16
UNIPROTKB|A2VD00	1424	eif3a "Eukaryotic translation	0.601	0.073	0.492	5.2e-14
DICTYBASE|DDB_G0268004	459	snrp70 "U1 small nuclear ribon	0.537	0.202	0.411	6.3e-12
UNIPROTKB|A4II09	1391	eif3a "Eukaryotic translation	0.601	0.074	0.406	1.8e-12
UNIPROTKB|Q02388	2944	COL7A1 "Collagen alpha-1(VII)	0.572	0.033	0.443	2.9e-12
FB|FBgn0003861	1275	trp "transient receptor potent	0.907	0.123	0.257	1.1e-11
POMBASE|SPAC19G12.10c	1002	cpy1 "vacuolar carboxypeptidas	0.416	0.071	0.530	1.3e-11
GENEDB_PFALCIPARUM|PF10_0374	9563	PF10_0374 "Pf 11-1 protein" [P	0.606	0.010	0.304	3.2e-11
UNIPROTKB|Q8I6U6	9563	PF10_0374 "Pf11-1 protein" [Pl	0.606	0.010	0.304	3.2e-11
GENEDB_PFALCIPARUM|PF07_0100	1032	PF07_0100 "hypothetical protei	0.595	0.099	0.380	3.6e-11

RGD|1560136 Rpgr "retinitis pigmentosa GTPase regulator" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
 Identities = 45/115 (39%), Positives = 63/115 (54%)

Query:    66 GDKEERGPGDKEKRGP--GDKEERGPGDKE----ERGPGDREKRGP--GDKEERGPGDKE 117
             GD+EE G G++E  G   G  EE G G++E    E G G+ E  G   G  EE G G++E
Sbjct:   308 GDREEEGGGEEEGGGEEEGGGEEEGGGEEEWEGEEEGQGEEEGEGEEEGGGEEEGGGEEE 367

Query:   118 KRGPGDKEKRGPGDKEERGPGDKEERGP--GDKEERGQGDKEKRGPGDKEERAPG 170
               G  + E    G+ EE G G++E  G   G+ EE G+G++E +G G+ EE   G
Sbjct:   368 GEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGQGEGEGEEEGEG 422

GO:0001750 "photoreceptor outer segment" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007601 "visual perception" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0042384 "cilium assembly" evidence=ISO

GO:0042462 "eye photoreceptor cell development" evidence=ISO

UNIPROTKB|A2VD00 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus laevis (taxid:8355)]

 Score = 178 (67.7 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
 Identities = 63/128 (49%), Positives = 72/128 (56%)

Query:    66 GDKEERGP--GDKEKRGP--GDKEERGP--GDKEERGP--GDREKRGP--GDKEERGP-- 113
             G  E+RGP  G  E RGP  G  E+RGP  G  E+RGP  G  E RGP  G  E+RGP  
Sbjct:  1002 GLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRR 1061

Query:   114 GDKEKRGP--GDKEKRGP--GDKEERGPG-D-KEERGP--GDKEERG--QGDKEKRGP-- 161
             G  E RGP  G  E RGP  G  E+RGP  D  E+RGP  G  E+RG  +G  E RGP  
Sbjct:  1062 GLDEDRGPRRGFDEDRGPRRGFDEDRGPRRDFDEDRGPRRGFDEDRGPRRGFDEDRGPRR 1121

Query:   162 GDKEERAP 169
             G  E+R P
Sbjct:  1122 GFDEDRGP 1129

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

DICTYBASE|DDB_G0268004 snrp70 "U1 small nuclear ribonucleoprotein 70 kDa protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 169 (64.5 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 42/102 (41%), Positives = 62/102 (60%)

Query:    66 GDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKE 125
             GD+ +RG  D+  RG  D+ +R   D+E RG GDR+ RG G + ER   D+  RG GD+ 
Sbjct:   262 GDRGDRGDRDRGDRG--DRSDRSDRDRE-RGRGDRDHRGSGGERER-ERDQRDRG-GDRG 316

Query:   126 KRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
                 GD+ +RG  D+ +RG  D+ +RG+ D+E RG  D+ +R
Sbjct:   317 G-DRGDRSDRGRSDRGDRG--DRSDRGRDDRE-RGRDDRGDR 354

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0005685 "U1 snRNP" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A4II09 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 160 (61.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 52/128 (40%), Positives = 75/128 (58%)

Query:    66 GDKEERGP--GDKEKRGP--GDKEERGP--GDKEERGP--GDREKRGP--GDKEERGP-- 113
             G  E+R P  G  + RGP  G  ++RGP  G  E+RGP  G  + RGP  G +++RGP  
Sbjct:  1060 GFDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRRGFEDDRGPRRGFEDDRGPRR 1119

Query:   114 GDKEKRGP--GDKEKRGP--GDKEERGP--GDKEERGP--GDKEERG--QGDKEKRGP-- 161
             G ++ RGP  G ++ RGP  G +++RGP  G  E+RGP  G +++RG  +G  E R P  
Sbjct:  1120 GFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGPRRGFEDDRGPRRGFDEDRTPRR 1179

Query:   162 GDKEERAP 169
             G  ++R P
Sbjct:  1180 GFDDDRGP 1187

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q02388 COL7A1 "Collagen alpha-1(VII) chain" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 51/115 (44%), Positives = 63/115 (54%)

Query:    71 RGP-GDKEKRG-PGDKEERG-PGDKEERGP-GDREKRGP----GDKEERGPGDKEKRGPG 122
             RGP G+K  +G PG+    G PG     GP GDR + GP    G   + GPG +EK  PG
Sbjct:  1666 RGPVGEKGDQGDPGEDGRNGSPGSS---GPKGDRGEPGPPGPPGRLVDTGPGAREKGEPG 1722

Query:   123 DKEKRGP-GDKEERG-PGDKEERG-PGDKEERG-QGDKEKRGP-GDKEERAPGGL 172
             D+ + GP G K + G PG   ERG  G +   G QGD   RGP G+K +R P GL
Sbjct:  1723 DRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGL 1777

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005590 "collagen type VII" evidence=TAS

GO:0008544 "epidermis development" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0031012 "extracellular matrix" evidence=ISS

FB|FBgn0003861 trp "transient receptor potential" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 44/171 (25%), Positives = 81/171 (47%)

Query:     2 QACRGERASDKEE--RGPGDKEERGPGDKKARGPXXXXXXXXXXXXXXXXXXXXXXXXXX 59
             ++ + E A+ KEE  +    K     G  K+  P                          
Sbjct:  1080 ESAKPEAAAKKEESSKTEASKPAATNGAAKSAAPSAPSDAKPDSKLKPGAAGAPEATKAT 1139

Query:    60 XXXXXPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKR 119
                  P D+++ GP ++ K+  GD +   PGD  +    D++K+ PGD +++ PGD + +
Sbjct:  1140 NGASKP-DEKKSGP-EEPKKAAGDSK---PGDDAK----DKDKK-PGDDKDKKPGDDKDK 1189

Query:   120 GPGDKEKRGPGDKEERGPGDKEERGPGD-KEERGQGDKEKRGPGDKEERAP 169
              P D   + P D +++ PGD +++ PGD K+++   DK+K+ P D +++ P
Sbjct:  1190 KPADNNDKKPADDKDKKPGDDKDKKPGDDKDKKPSDDKDKK-PADDKDKKP 1239

GO:0016028 "rhabdomere" evidence=NAS;IDA;TAS

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0005262 "calcium channel activity" evidence=ISS;IMP

GO:0009416 "response to light stimulus" evidence=IMP;TAS

GO:0006816 "calcium ion transport" evidence=ISS;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0008086 "light-activated voltage-gated calcium channel activity" evidence=NAS;IMP

GO:0035997 "rhabdomere microvillus membrane" evidence=IDA

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008377 "light-induced release of internally sequestered calcium ion" evidence=IDA

GO:0015279 "store-operated calcium channel activity" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0008087 "light-activated voltage-gated calcium channel complex" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007602 "phototransduction" evidence=NAS

GO:0070588 "calcium ion transmembrane transport" evidence=IMP

GO:0071454 "cellular response to anoxia" evidence=IGI

GO:0008355 "olfactory learning" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0005218 "intracellular ligand-gated calcium channel activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0030845 "phospholipase C-inhibiting G-protein coupled receptor signaling pathway" evidence=IMP

GO:0050962 "detection of light stimulus involved in sensory perception" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007605 "sensory perception of sound" evidence=IMP

POMBASE|SPAC19G12.10c cpy1 "vacuolar carboxypeptidase Y" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 171 (65.3 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 43/81 (53%), Positives = 52/81 (64%)

Query:    84 KEERGPGDKEERGPGDREK-RGPGDKEE-RGPGDKEK-RGPGDKEK-RGPGDKEE-RGPG 138
             +E  GP  +  RGP D+E  +GP DKE  +GP DKE  +GP DKE  +GP DKE  +GP 
Sbjct:   348 EEHEGP--EHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPK 405

Query:   139 DKEE-RGPGDKEERGQGDKEK 158
             DKE  +GP DKE   QG KEK
Sbjct:   406 DKEHHKGPKDKEHH-QGPKEK 425

GO:0000324 "fungal-type vacuole" evidence=IDA

GO:0004185 "serine-type carboxypeptidase activity" evidence=IMP

GO:0005737 "cytoplasm" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0007039 "vacuolar protein catabolic process" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IDA

GENEDB_PFALCIPARUM|PF10_0374 PF10_0374 "Pf 11-1 protein" [Plasmodium falciparum (taxid:5833)]

 Score = 176 (67.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 32/105 (30%), Positives = 64/105 (60%)

Query:    65 PGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDK 124
             P  K+E+ P  K+++ P  K+E+ P  K+E+    ++++ P  K+E+ P  K+++ P  K
Sbjct:  9411 PVPKKEKVPAPKKEKVPAPKKEKVPAPKKEKPAVPKKEKVPETKKEKAPEPKKEKAPEPK 9470

Query:   125 EKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
             +++ P  K+E+ P  K+E+ P  K+E+    K+++ P  K+E+ P
Sbjct:  9471 KEKAPEPKKEKAPEPKKEKAPAPKKEKVPVPKKEKVPAPKKEKVP 9515

GO:0007276 "gamete generation" evidence=TAS

UNIPROTKB|Q8I6U6 PF10_0374 "Pf11-1 protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 176 (67.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 32/105 (30%), Positives = 64/105 (60%)

Query:    65 PGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDK 124
             P  K+E+ P  K+++ P  K+E+ P  K+E+    ++++ P  K+E+ P  K+++ P  K
Sbjct:  9411 PVPKKEKVPAPKKEKVPAPKKEKVPAPKKEKPAVPKKEKVPETKKEKAPEPKKEKAPEPK 9470

Query:   125 EKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
             +++ P  K+E+ P  K+E+ P  K+E+    K+++ P  K+E+ P
Sbjct:  9471 KEKAPEPKKEKAPEPKKEKAPAPKKEKVPVPKKEKVPAPKKEKVP 9515

GO:0007276 "gamete generation" evidence=TAS

GENEDB_PFALCIPARUM|PF07_0100 PF07_0100 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 167 (63.8 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 40/105 (38%), Positives = 55/105 (52%)

Query:    66 GDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKE 125
             G+K     G+K     G+KE  G G+K     G++E  G G+KE  G G+KE  G G+KE
Sbjct:   749 GEKGNIDGGEKGNIDGGEKENIGGGEKGNIDGGEKENIGGGEKENIGDGEKENIGGGEKE 808

Query:   126 KRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
               G G+KE  G GD++E   GD++E   GD +   P D      G
Sbjct:   809 NIGDGEKENIG-GDEKEHVGGDEKEHTCGDNQA-SPCDHRNHCDG 851

GO:0020011 "apicoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	3e-08
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	3e-08
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	4e-08
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	1e-07
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	2e-07
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	3e-07
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	5e-07
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	2e-06
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	6e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	8e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-04
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	8e-04

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 55/160 (34%), Positives = 72/160 (45%)

Query: 8   RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
           R  D E R  G+  ER   D + R  G+  ER   D E R  G+  ER   D E R  G+
Sbjct: 34  RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGN 93

Query: 68  KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
             ER   D E +  G+  ER   D E +  G+  +R   D E R  G+  +R   D E +
Sbjct: 94  VLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENK 153

Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
             G+  ER   D E R  G+  ER Q D E +  G+  ER
Sbjct: 154 SQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLER 193

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 54/160 (33%), Positives = 72/160 (45%)

Query: 8   RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
           R  D E R  G+  ER   D + R  G+  ER   D E R  G+  ER   D E +  G+
Sbjct: 50  RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGN 109

Query: 68  KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
             ER   D E +  G+  ER   D E R  G+  +R   D E +  G+  +R   D E R
Sbjct: 110 VLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENR 169

Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
             G+  ER   D E +  G+  ER Q D E +  G+  ER
Sbjct: 170 SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLER 209

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 53/160 (33%), Positives = 72/160 (45%)

Query: 8   RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
           R  D E R  G+  ER   D + +  G+  ER   D E +  G+  ER   D E R  G+
Sbjct: 82  RQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGN 141

Query: 68  KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
             ER   D E +  G+  ER   D E R  G+  +R   D E +  G+  +R   D E +
Sbjct: 142 VLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENK 201

Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
             G+  ER   D E R  G+  ER Q D E +  G+  ER
Sbjct: 202 SQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLER 241

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 54/161 (33%), Positives = 72/161 (44%)

Query: 7   ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
            R  D E R  G+  ER   D + R  G+  ER   D E +  G+  ER   D E +  G
Sbjct: 65  RRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQG 124

Query: 67  DKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEK 126
           +  ER   D E R  G+  ER   D E +  G+  +R   D E R  G+  +R   D E 
Sbjct: 125 NVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVEN 184

Query: 127 RGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
           +  G+  ER   D E +  G+  ER Q D E R  G+  ER
Sbjct: 185 KSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLER 225

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 52/160 (32%), Positives = 72/160 (45%)

Query: 8   RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
           R  D E +  G+  ER   D + +  G+  ER   D E R  G+  ER   D E +  G+
Sbjct: 98  RQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGN 157

Query: 68  KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
             ER   D E R  G+  ER   D E +  G+  +R   D E +  G+  +R   D E R
Sbjct: 158 VLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENR 217

Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
             G+  ER   D E +  G+  ER Q D E +  G+  ER
Sbjct: 218 SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLER 257

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 52/160 (32%), Positives = 72/160 (45%)

Query: 14  ERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGP 73
           ER   D E R  G+   R   D E R  G+  ER   D E R  G+  +R   D E R  
Sbjct: 32  ERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQ 91

Query: 74  GDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKE 133
           G+  +R   D E +  G+  ER   D E +  G+  ER   D E R  G+  +R   D E
Sbjct: 92  GNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAE 151

Query: 134 ERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV 173
            +  G+  ER   D E R QG+  +R   D E ++ G ++
Sbjct: 152 NKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVL 191

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 52/150 (34%), Positives = 68/150 (45%)

Query: 18  GDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKE 77
           G+  ER   D + R  G+  ER   D E R  G+  ER   D E R  G+  ER   D E
Sbjct: 28  GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAE 87

Query: 78  KRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGP 137
            R  G+  ER   D E +  G+  +R   D E +  G+  +R   D E R  G+  ER  
Sbjct: 88  NRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQ 147

Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEER 167
            D E +  G+  ER Q D E R  G+  ER
Sbjct: 148 RDAENKSQGNVLERRQRDAENRSQGNVLER 177

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 50/160 (31%), Positives = 72/160 (45%)

Query: 14  ERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGP 73
           ER   D E R  G+   R   D E +  G+  ER   D E R  G+  +R   D E +  
Sbjct: 128 ERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQ 187

Query: 74  GDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKE 133
           G+  +R   D E +  G+  ER   D E R  G+  ER   D E +  G+  +R   D E
Sbjct: 188 GNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVE 247

Query: 134 ERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV 173
            +  G+  ER   D E R QG+  +R   D E ++ G ++
Sbjct: 248 NKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVL 287

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 48/148 (32%), Positives = 67/148 (45%)

Query: 26  GDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKE 85
           G+   R   D E R  G+  ER   D E R  G+  +R   D E R  G+  +R   D E
Sbjct: 28  GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAE 87

Query: 86  ERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGP 145
            R  G+  ER   D E +  G+  ER   D E +  G+  +R   D E R  G+  ER  
Sbjct: 88  NRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQ 147

Query: 146 GDKEERGQGDKEKRGPGDKEERAPGGLV 173
            D E + QG+  +R   D E R+ G ++
Sbjct: 148 RDAENKSQGNVLERRQRDAENRSQGNVL 175

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 3/170 (1%)

Query: 5   RGERASDKEER---GPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
            GER  ++ ER     G+  E   G+ +  G  + +     + E       E+ G G+ E
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIE 700

Query: 62  KRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGP 121
            +    K E    + E  G  + E      + E G    E    G+ E  G  + E  G 
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760

Query: 122 GDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGG 171
             + +     + E    + E      ++   +GD+   G  + E     G
Sbjct: 761 RKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAG 810

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 3/164 (1%)

Query: 7   ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGP---GDEEERGPGDKEKR 63
           E A  +E R  G+   RG   K   G          D  ER      DE  R    ++++
Sbjct: 123 EAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ 182

Query: 64  GPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGD 123
              ++ ERG  ++  R   D++ R   ++ +R      + G   +  R   D+      D
Sbjct: 183 AEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDD 242

Query: 124 KEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
             +       + G G    RG   ++   +G +   G  ++E  
Sbjct: 243 NREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPE 286

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 3/165 (1%)

Query: 7   ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
             A+ ++   P  +      +                         E R  G+  +RG  
Sbjct: 83  AAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAA 142

Query: 67  DKEERGPGDKEKRGPGDKEERGPGDK--EERGPGDREKRGP-GDKEERGPGDKEKRGPGD 123
            K   G          D  ER   ++  E R  GDRE R    ++ ERG  ++  R   D
Sbjct: 143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202

Query: 124 KEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERA 168
           +++R   ++ +R        G   +  R + D+      D  E  
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDR 247

Length = 672

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 11  DKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGP---GDKEKRGPGD 67
           +  E   G+ E+ G  + K     + E       E+ G G+ E +     G+ E      
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEH 717

Query: 68  KEERGPGDKEKRGPGDKEERG-------PGDKEERGPGDREKRGPGDKEERGPGDKEKRG 120
           + E      E  G  +  E G        G+ E +   + E      + E     + K  
Sbjct: 718 EGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED 777

Query: 121 PGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
             + E +   D E +  GD+   G  + E   +  ++    G  E +A  
Sbjct: 778 EDEGEIQAGEDGEMK--GDEGAEGKVEHEGETEAGEKDEHEGQSETQADD 825

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 4/160 (2%)

Query: 2   QACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
            A      +         +E R  G+   RG   K   G          D  ER   ++ 
Sbjct: 110 AAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEER 169

Query: 62  KRGPGDKEERGPGDKEKRGP-GDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRG 120
                  +      + +RG  G +EERG    +      RE+    ++  R  G   +  
Sbjct: 170 DERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229

Query: 121 PGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRG 160
              +++R     + R          GD  E   G + +R 
Sbjct: 230 RRRRDRRDARGDDNREDRG---DRDGDDGEGRGGRRGRRF 266

Length = 672

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 2/143 (1%)

Query: 17  PGDKEERGPGDKKA--RGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPG 74
                ER   + +      G+  E   G+ E+ G  + +     + E       E+ G G
Sbjct: 638 AEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEG 697

Query: 75  DKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEE 134
           + E +    K E    + E  G  + E      + E G   +E    G+ E  G  + E 
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757

Query: 135 RGPGDKEERGPGDKEERGQGDKE 157
            G   + E     + E  + + E
Sbjct: 758 EGDRKETEHEGETEAEGKEDEDE 780

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 2/164 (1%)

Query: 2   QACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
            A + E+ + +      +          A             +E R  G+   RG   K 
Sbjct: 86  AARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKA 145

Query: 62  KRGPGDKEERGPGDKEKRGPGDK--EERGPGDKEERGPGDREKRGPGDKEERGPGDKEKR 119
             G          D  +R   ++  E R  GD+E+R            +E    GD   R
Sbjct: 146 GEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205

Query: 120 GPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGD 163
               ++     ++  R  GD+  R         +GD  +   GD
Sbjct: 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGD 249

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 3/161 (1%)

Query: 7   ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
             A+            R      A     K E  P  +       E    P   + R   
Sbjct: 72  APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131

Query: 67  DKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEK 126
           ++ E       ++     E+     + +      E+      E R  GD+E R    +  
Sbjct: 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEER---DERRRRGDREDRQAEAERG 188

Query: 127 RGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
                +E    GD  +R    ++   + ++ +R  GD+  R
Sbjct: 189 ERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229

Length = 672

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 6   GERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGP 65
           GE   + E+ G G+ E +   + +      + E     + +    + E +   D E +  
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK-- 792

Query: 66  GDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKE 125
           GD+   G  + E      +++   G  E +      K   G++E     + E +G   ++
Sbjct: 793 GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE----LNAENQGEAKQD 848

Query: 126 KRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEE 166
           ++G         GD EE    ++EE  + ++E+    ++EE
Sbjct: 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 1/149 (0%)

Query: 18  GDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKE 77
           GD  E     ++    G++     G+  E   G+ E+ G  + +     + E       E
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGE 692

Query: 78  KRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGP 137
           + G G+ E +    K E    + E  G  + E      + + G   +E    G+ E  G 
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGK 752

Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEE 166
            + E  G   KE   +G+ E  G  D++E
Sbjct: 753 HEVETEGD-RKETEHEGETEAEGKEDEDE 780

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 2/154 (1%)

Query: 20  KEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKR 79
           KE RG G   A                      +   P  +      +            
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 80  GPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK--EERGP 137
                       +E R  G+  +RG   K   G          D  +R   ++  E R  
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175

Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEERAPGG 171
           GD+E+R    +       +E+   GD  +R    
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209

Length = 672

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 42  GDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDR- 100
           GD  E     E     G++     G+  E   G+ E+   G+ E +G  + E   P +R 
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQ--EGETETKGENESEGEIPAERK 690

Query: 101 -EKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKR 159
            E+ G G+ E +    K +    + E  G  + E      + E G   +E   +G+ E  
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750

Query: 160 GPGDKEERA 168
           G  + E   
Sbjct: 751 GKHEVETEG 759

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%)

Query: 5   RGERASDKEERGPGDKEERGPGDKKARGP---GDKEERG---PGDKEERGPGDEEE--RG 56
           +GE  S+ E       E+ G G+ +A+     G+ E       G+ E  G  DE E   G
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETG 735

Query: 57  PGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDK 116
              +E    G+ E  G  + E  G   + E     + E    + E      ++    GD+
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795

Query: 117 EKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKE 157
              G  + E      +++   G  E +    + +   G++E
Sbjct: 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE 836

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 22/126 (17%), Positives = 37/126 (29%)

Query: 43  DKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREK 102
            KEE     EEE     +E      +EE            +  E     +    P + E 
Sbjct: 44  RKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEA 103

Query: 103 RGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPG 162
             P +   R P  K+        K      + +     +    G    R +G + +R   
Sbjct: 104 ARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKK 163

Query: 163 DKEERA 168
            K++  
Sbjct: 164 KKQKPT 169

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF02389	199	Cornifin: Cornifin (SPRR) family; InterPro: IPR003	96.57

>PF02389 Cornifin: Cornifin (SPRR) family; InterPro: IPR003302 This entry represents Cornifin (also known as SPR), which encodes a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo

Probab=96.57  E-value=0.24  Score=39.16  Aligned_cols=116  Identities=11%  Similarity=-0.054  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy14223         53 EERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK  132 (173)
Q Consensus        53 e~r~PG~~~~ripgsqe~R~pgsq~~R~pgs~~~RiPgs~~~RiPgs~e~RipGsqd~R~PG~qd~Ripgs~n~Ripgsq  132 (173)
                      ...++......+|+.....+|+.....+|+.....+|.....++|+.....+|+.....+|+.....+|..-...++..-
T Consensus        66 ~t~Vp~~~~t~vP~~~~t~Vpe~~~t~VP~~~~t~VP~~~~t~VP~~~~t~Vp~p~~~~VP~~~~~~VP~~~~~~vP~~~  145 (199)
T PF02389_consen   66 YTEVPEPCYTSVPEPCYTKVPEPCYTKVPEPCYTKVPEPGYTKVPEPCTTSVPEPCYTSVPEPCYTKVPEPGCTSVPEPG  145 (199)
T ss_pred             ccccccccccccCCCccCcccCCCcCcCCCCccCCCCCCCcCCCCCCccCccCCCCCCcCCCCcCCCCCCCCcccCCCCc
Confidence            33333344444444444444444444444444444444444444444444444444444444444444444444444433


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy14223        133 EERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERA  168 (173)
Q Consensus       133 e~RiPg~qe~RiPg~qn~ri~~~q~~rip~~k~~~~  168 (173)
                      ...++...--.+|.....++++.....+|...-..+
T Consensus       146 ~~~vp~p~~~~vP~~~~~~vP~~~~~~vP~p~~~~v  181 (199)
T PF02389_consen  146 YTEVPEPCYTKVPEPGYTSVPEPCYTEVPEPCYTKV  181 (199)
T ss_pred             cccccCCccccCCCCcccccCCccccCCCCCCcccC
Confidence            344444444444444444444444444444444333

The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid []. Cornifin is a keratinocyte protein that first appears in the cell cytosol, but ultimately becomes cross-linked to membrane proteins by transglutaminase. All that results in the formation of an insoluble envelope beneath the plasma membrane. It may participate widely in the construction of cell envelopes in cornifying epithelia characterised by either increased thickness or a requirement for extreme flexibility. ; GO: 0018149 peptide cross-linking, 0005737 cytoplasm

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1jmo_A	480	HC-II, heparin cofactor II, HLS2, serin; serpin, t	3e-05
1jmo_A	480	HC-II, heparin cofactor II, HLS2, serin; serpin, t	3e-05
1jmo_A	480	HC-II, heparin cofactor II, HLS2, serin; serpin, t	1e-04

>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin, protease, inhibition, inhibitor, blood CLO; HET: TYS NDG NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A* Length = 480

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 38  ERGPGDKEERGPGDEEERGP-GDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERG 96
            +GP D+ E+G    +   P  ++            P D  K      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 97  PGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEE 134
             D EK    D +     D     P D +       + 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQL 97

>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin, protease, inhibition, inhibitor, blood CLO; HET: TYS NDG NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A* Length = 480

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 14  ERGPGDKEERGPGDKKARGP-GDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERG 72
            +GP D+ E+G    ++  P  ++            P D  +      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 73  PGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEE 110
             D EK    D +     D     P D +       + 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQL 97

>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin, protease, inhibition, inhibitor, blood CLO; HET: TYS NDG NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A* Length = 480

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 78  KRGPGDKEERGPGDKEERGP-GDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERG 136
            +GP D+ E+G    +   P  ++            P D  K      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 137 PGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
             D E+    D +     D     P D +  A 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAG 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00