Psyllid ID: psy14241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSGAGEKAEKAT
Secondary Structure (PSIPRED)
cccccHHHHHccccEEEEcccEEEEccccccccHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHHcccEEEEEccccccEEEEEccccccccccHHHHHHHHHccccHHHHHHHHHcccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccEEEEEcccEEEEccccccccHHHHHHHHHHccccccccEEHHHHHHHcccHHHHHHccEEEEEccccccEEEEEccccccccccHHHHHHHHcccHHHHHHHHHHHcccEEEccccccccccc
Coil and Loop (DISEMBL)
mkwlstealqnnpkieviegnkyifkpvfkiKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIyvtrpadkrkvmfyndksaqldlDEDFQKLWRSISVDGMILRIRSFYgvdyfsgagekaekat
Flexible Loop (DISEMBL)
mkwlstealqnnpkieviegnkyiFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKAlkneiiyvtrpadkRKVMFYNDksaqldldedFQKLWRSISVDGMILRIRSFYgvdyfsgagekaekat
Low Complexity Region (SEG)
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSGAGEKAEKAT
Disordered region (IsUnstruct)
*************KIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFS**********
Disordered Region (DISOPRED)
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILR*********************
Disordered Region (DISEMBL)
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSGA********
Disordered Region (DISPRO)
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSGAGEKAEKAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
P29084	291	Transcription initiation	yes	N/A	0.801	0.374	0.587	1e-34
P29540	288	General transcription fac	N/A	N/A	0.801	0.378	0.587	4e-34
Q2KJF9	289	General transcription fac	yes	N/A	0.801	0.377	0.578	6e-34
Q9D902	292	General transcription fac	yes	N/A	0.801	0.373	0.578	7e-34
Q54KJ8	276	General transcription fac	yes	N/A	0.705	0.347	0.299	0.0003

>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens GN=GTF2E2 PE=1 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 94/114 (82%), Gaps = 5/114 (4%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+L
Sbjct: 117 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEAL 175

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct: 176 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 228

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
Homo sapiens (taxid: 9606)

>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis GN=gtf2e2 PE=2 SV=1

 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 93/114 (81%), Gaps = 5/114 (4%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL +EAL NNPKIE+I+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E L
Sbjct: 114 QWLMSEALVNNPKIEIIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGL 172

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           P+ +KA+K   ++I++VTRP DK+K++FYNDKS Q  +DE+FQKLWRS+ VD M
Sbjct: 173 PNAQKAIKALGDQIVFVTRP-DKKKILFYNDKSCQFTVDEEFQKLWRSVPVDSM 225

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Xenopus laevis (taxid: 8355)

>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2 PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 93/114 (81%), Gaps = 5/114 (4%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL +EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E L
Sbjct: 115 QWLMSEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGL 173

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct: 174 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 226

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Bos taurus (taxid: 9913)

>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus GN=Gtf2e2 PE=2 SV=2

 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 93/114 (81%), Gaps = 5/114 (4%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E L
Sbjct: 118 QWLMTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGL 176

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           P+ +KA+K   ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct: 177 PNSQKAVKALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 229

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Mus musculus (taxid: 10090)

>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 11/107 (10%)

Query: 7   EALQNNPKIEVIEGN-KYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 65
           E L+NN KI +  GN ++ FKP F ++ ++ +L LL  +     GGIL+ ++ ES  + E
Sbjct: 108 ELLRNNEKI-IDHGNDRFSFKPKFNVRTQRDILDLLPNYP----GGILVSELAESYNNAE 162

Query: 66  KALK----NEIIYVTRPADKR-KVMFYNDKSAQLDLDEDFQKLWRSI 107
             +K     + I+  + A+    ++F ND+  ++ L  +   +W+SI
Sbjct: 163 SDVKKLKETKQIFAIKAAESACDIIFPNDERLRVPLSSELVDMWKSI 209

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
157129398	295	hypothetical protein AaeL_AAEL011462 [Ae	0.808	0.372	0.681	3e-41
357605075	291	transcription initiation factor IIE subu	0.816	0.381	0.675	1e-40
118786363	295	AGAP005382-PA [Anopheles gambiae str. PE	0.808	0.372	0.654	1e-39
307184669	286	General transcription factor IIE subunit	0.816	0.388	0.649	1e-39
332021782	280	General transcription factor IIE subunit	0.808	0.392	0.657	2e-39
312371209	238	hypothetical protein AND_22400 [Anophele	0.808	0.462	0.646	3e-39
322797068	280	hypothetical protein SINV_01812 [Solenop	0.808	0.392	0.649	6e-39
307208277	281	General transcription factor IIE subunit	0.816	0.395	0.631	9e-39
195135453	292	GI16593 [Drosophila mojavensis] gi|19391	0.808	0.376	0.657	3e-38
194747415	292	GF25060 [Drosophila ananassae] gi|190623	0.808	0.376	0.657	6e-38

>gi|157129398|ref|XP_001661672.1| hypothetical protein AaeL_AAEL011462 [Aedes aegypti] gi|108872235|gb|EAT36460.1| AAEL011462-PA [Aedes aegypti]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 96/113 (84%), Gaps = 3/113 (2%)

Query: 3   WLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLP 62
           WL TEAL+NNPKI+V    +Y+FK VFKIKD K L++LLKQHDLKG+GG+LLDDV+ESLP
Sbjct: 109 WLQTEALRNNPKIDVTPEGRYVFKAVFKIKDGKSLMRLLKQHDLKGLGGVLLDDVQESLP 168

Query: 63  HCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           HCEK LKN   EI+++TRP DK+KV+FYND+SA   +DEDFQKLWR+++VD M
Sbjct: 169 HCEKVLKNRASEIVFITRPNDKKKVLFYNDRSANFQIDEDFQKLWRAVTVDAM 221

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605075|gb|EHJ64456.1| transcription initiation factor IIE subunit beta [Danaus plexippus]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEALQNNPKIE     K+IFKPV+KIKD+K LL+LLKQHDLKG+GGI L+DV+ESL
Sbjct: 109 QWLQTEALQNNPKIEHTFDGKFIFKPVYKIKDKKSLLRLLKQHDLKGLGGIFLEDVQESL 168

Query: 62  PHCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHC++ALK+   EI+Y+TRP+DK+K++FYNDK+A LD+DE+F KLWR+ +VD M
Sbjct: 169 PHCDRALKSLAQEILYITRPSDKKKILFYNDKTATLDVDEEFVKLWRATAVDAM 222

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786363|ref|XP_315392.3| AGAP005382-PA [Anopheles gambiae str. PEST] gi|116126285|gb|EAA11794.3| AGAP005382-PA [Anopheles gambiae str. PEST]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 95/113 (84%), Gaps = 3/113 (2%)

Query: 3   WLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLP 62
           WL  EAL+NNPKIEV    +++FK VFKIKD K L++LLKQHDLKG+GG+LLDDV+ESLP
Sbjct: 109 WLQGEALRNNPKIEVTPDGRFLFKSVFKIKDGKSLMRLLKQHDLKGLGGVLLDDVQESLP 168

Query: 63  HCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           HC+K LKN   EII++TRP DK+K++FYND++A   +DEDFQKLWR+++VD M
Sbjct: 169 HCDKVLKNRASEIIFITRPNDKKKILFYNDRTANFQVDEDFQKLWRAVTVDAM 221

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184669|gb|EFN70998.1| General transcription factor IIE subunit 2 [Camponotus floridanus]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 98/114 (85%), Gaps = 3/114 (2%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEAL  NPKIEV   +++ FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESL
Sbjct: 116 QWLQTEALLKNPKIEVTSDSRFAFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESL 175

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHC+K LK   NEI+Y+TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD M
Sbjct: 176 PHCDKHLKSLQNEILYITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAM 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021782|gb|EGI62128.1| General transcription factor IIE subunit 2 [Acromyrmex echinatior]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 100/114 (87%), Gaps = 4/114 (3%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEAL  NPKIEV +G +++FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESL
Sbjct: 110 QWLQTEALIQNPKIEVTDG-RFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESL 168

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHC+K LK   NEI+Y+TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD M
Sbjct: 169 PHCDKHLKNLQNEILYITRPLDKKKIIFYNDKTAQFPIDEEFQKLWRAVAVDAM 222

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371209|gb|EFR19450.1| hypothetical protein AND_22400 [Anopheles darlingi]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 95/113 (84%), Gaps = 3/113 (2%)

Query: 3   WLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLP 62
           WL  EAL+NNPKIE+    +Y+FK VFK+KD K L++LLKQHDLKG+GG+LLDDV+ESLP
Sbjct: 52  WLQGEALRNNPKIELTPDGRYLFKAVFKLKDGKSLMRLLKQHDLKGLGGVLLDDVQESLP 111

Query: 63  HCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           HCEK LKN   EI+++TRP DK+K+++YND++A   +DEDFQKLWRS++VD M
Sbjct: 112 HCEKVLKNRASEIVFITRPNDKKKILYYNDRTANFQVDEDFQKLWRSVTVDAM 164

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797068|gb|EFZ19357.1| hypothetical protein SINV_01812 [Solenopsis invicta]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 99/114 (86%), Gaps = 4/114 (3%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL +EAL  NPKIEV EG +++FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESL
Sbjct: 110 QWLQSEALVQNPKIEVTEG-RFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESL 168

Query: 62  PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHC+K LK   NEI+Y+ RP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD M
Sbjct: 169 PHCDKHLKSLQNEILYIIRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAM 222

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208277|gb|EFN85709.1| General transcription factor IIE subunit 2 [Harpegnathos saltator]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 2   KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           +WL TEAL  NPKI+V   ++++FK ++KIKD+K LL+LLKQHDLKG+GGILL+D++ESL
Sbjct: 110 QWLQTEALVKNPKIDVTTDSRFVFKAMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESL 169

Query: 62  PHCE---KALKNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHCE   KAL+NEI+++TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD M
Sbjct: 170 PHCEKHLKALQNEILFITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAM 223

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135453|ref|XP_002012147.1| GI16593 [Drosophila mojavensis] gi|193918411|gb|EDW17278.1| GI16593 [Drosophila mojavensis]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 95/114 (83%), Gaps = 4/114 (3%)

Query: 3   WLSTEALQNNPKIEVI-EGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           WL+ EAL NNPKIEV  +G K+ FKPV+KIKD K L++LLKQHDLKG+GGILL+DV+ESL
Sbjct: 111 WLAGEALNNNPKIEVTPDGTKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGILLEDVQESL 170

Query: 62  PHCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHCEK LKN   EI+++ RP DK+K++FYND++A   +DE+FQKLWRS +VD M
Sbjct: 171 PHCEKVLKNRAAEILFIIRPIDKKKILFYNDRTANFSVDEEFQKLWRSATVDAM 224

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747415|ref|XP_001956147.1| GF25060 [Drosophila ananassae] gi|190623429|gb|EDV38953.1| GF25060 [Drosophila ananassae]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 95/114 (83%), Gaps = 4/114 (3%)

Query: 3   WLSTEALQNNPKIEVIE-GNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
           WLS EAL NNPKI+V   G+K+ FKPV+KIKD K L++LLKQHDLKG+GG+LL+DV+ESL
Sbjct: 111 WLSGEALNNNPKIDVSPCGSKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGVLLEDVQESL 170

Query: 62  PHCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
           PHCEK LKN   EI+++ RP DK+K++FYND++A   +DEDFQKLWRS +VD M
Sbjct: 171 PHCEKVLKNRAAEILFIIRPIDKKKILFYNDRTANFSVDEDFQKLWRSATVDAM 224

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0015829	292	TfIIEbeta "Transcription facto	0.808	0.376	0.649	8.9e-38
UNIPROTKB|P29084	291	GTF2E2 "Transcription initiati	0.801	0.374	0.587	5.8e-34
UNIPROTKB|E2R5J2	291	GTF2E2 "Uncharacterized protei	0.801	0.374	0.596	7.4e-34
UNIPROTKB|F1MUX7	289	GTF2E2 "General transcription	0.801	0.377	0.578	1.5e-33
UNIPROTKB|Q2KJF9	289	GTF2E2 "General transcription	0.801	0.377	0.578	1.5e-33
MGI|MGI:1915403	292	Gtf2e2 "general transcription	0.801	0.373	0.578	1.5e-33
RGD|1310134	279	Gtf2e2 "general transcription	0.801	0.390	0.578	1.5e-33
UNIPROTKB|F1RX65	209	GTF2E2 "Uncharacterized protei	0.801	0.521	0.577	1.8e-32
ZFIN|ZDB-GENE-030131-6794	291	gtf2e2 "general transcription	0.801	0.374	0.578	1.6e-31
UNIPROTKB|Q5ZIE1	290	GTF2E2 "Uncharacterized protei	0.801	0.375	0.526	3.8e-30

FB|FBgn0015829 TfIIEbeta "Transcription factor IIEbeta" [Drosophila melanogaster (taxid:7227)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 74/114 (64%), Positives = 94/114 (82%)

Query:     3 WLSTEALQNNPKIEVIE-GNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             WL++EAL NNPK+E    G K+ FKPV+KIKD K L++LLKQHDLKG+GGILLDDV+ESL
Sbjct:   111 WLASEALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESL 170

Query:    62 PHCEKALKN---EIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             PHCEK LKN   EI++V RP DK+K++FYND++A   +D++FQKLWRS +VD M
Sbjct:   171 PHCEKVLKNRSAEILFVVRPIDKKKILFYNDRTANFSVDDEFQKLWRSATVDAM 224

GO:0005634 "nucleus" evidence=IDA

GO:0005673 "transcription factor TFIIE complex" evidence=ISS;IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P29084 GTF2E2 "Transcription initiation factor IIE subunit beta" [Homo sapiens (taxid:9606)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 67/114 (58%), Positives = 94/114 (82%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+L
Sbjct:   117 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEAL 175

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   176 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 228

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R5J2 GTF2E2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 68/114 (59%), Positives = 93/114 (81%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL TEAL NNPKIEVI+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E L
Sbjct:   117 QWLMTEALVNNPKIEVIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGL 175

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++II+V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   176 PNSQKAVKALGDQIIFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 228

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|F1MUX7 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL +EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E L
Sbjct:   115 QWLMSEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGL 173

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   174 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 226

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|Q2KJF9 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL +EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E L
Sbjct:   115 QWLMSEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGL 173

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   174 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 226

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

MGI|MGI:1915403 Gtf2e2 "general transcription factor II E, polypeptide 2 (beta subunit)" [Mus musculus (taxid:10090)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E L
Sbjct:   118 QWLMTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGL 176

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   177 PNSQKAVKALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 229

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

RGD|1310134 Gtf2e2 "general transcription factor IIE, polypeptide 2, beta" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E L
Sbjct:   117 QWLMTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGL 175

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD M
Sbjct:   176 PNSQKAVKALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 228

GO:0005634 "nucleus" evidence=ISO

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1RX65 GTF2E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 67/116 (57%), Positives = 93/116 (80%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL TEAL NNPKIEVI+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E L
Sbjct:    33 QWLMTEALVNNPKIEVIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGL 91

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDE--DFQKLWRSISVDGM 112
             P+ +KA+K   ++I++V RP DK+K++F+NDKS Q  +DE  +FQKLWRS++VD M
Sbjct:    92 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEGTEFQKLWRSVTVDSM 146

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

ZFIN|ZDB-GENE-030131-6794 gtf2e2 "general transcription factor IIE, polypeptide 2, beta" [Danio rerio (taxid:7955)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/114 (57%), Positives = 89/114 (78%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL +EAL +NPKI+V EG KY FKP + +KD+K LL+LL +HD  G+GG+LLDDV E L
Sbjct:   116 QWLMSEALASNPKIDVREG-KYAFKPKYHLKDKKALLRLLDKHDQLGLGGVLLDDVEEGL 174

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+  KA+K   ++II+VTRP DK+K++FYNDK  Q  +DE+FQKLWRS+ VD +
Sbjct:   175 PNAAKAIKALGDQIIFVTRP-DKKKILFYNDKHCQFVVDEEFQKLWRSVPVDSI 227

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|Q5ZIE1 GTF2E2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 60/114 (52%), Positives = 89/114 (78%)

Query:     2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
             +WL  EAL NNPKIEV++G K+ FKP + +KD+K LL+LL +HD +G+GGI L+++ E L
Sbjct:   116 QWLMNEALVNNPKIEVVDG-KFAFKPKYNLKDKKALLRLLDKHDQQGLGGIFLEEIEEGL 174

Query:    62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
             P+  KA+K   ++I++VTRP DKR++++YNDKS    +DE+F+KLWRSI +D +
Sbjct:   175 PNAHKAIKALGDQILFVTRP-DKRQLLYYNDKSCHFSVDEEFRKLWRSIPMDSI 227

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KJF9	T2EB_BOVIN	No assigned EC number	0.5789	0.8014	0.3771	yes	N/A
Q9D902	T2EB_MOUSE	No assigned EC number	0.5789	0.8014	0.3732	yes	N/A
P29084	T2EB_HUMAN	No assigned EC number	0.5877	0.8014	0.3745	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
COG5174	285	COG5174, TFA2, Transcription initiation factor IIE	9e-08
TIGR04136	458	TIGR04136, rSAM_FibroRumin, radical SAM peptide ma	0.001
cd07977	75	cd07977, TFIIE_beta_winged_helix, TFIIE_beta_winge	0.003

>gnl|CDD|227501 COG5174, TFA2, Transcription initiation factor IIE, beta subunit [Transcription]

 Score = 48.8 bits (116), Expect = 9e-08
 Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 7   EALQNNPKIEVIEGNK-YIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 65
             L+   +I +   +  ++FKP++ I+  + LLK+L+        G+ +  + +  P+  
Sbjct: 118 LLLKKKRRIRIDATHSTFMFKPLYSIRSVEDLLKVLR--SQGTEEGLSMKKLMDGWPNVV 175

Query: 66  KALK-----NEIIYVTRPADKRKVMF-YNDKSAQLDLDEDFQKLWRSISV 109
             ++     NEI+ +    D   V+   N ++ +  +D +F+ LW  + +
Sbjct: 176 PFVEELEKSNEILILRTDKDGSPVVVWNNTQNLECPVDPEFKSLWNQVRI 225

Length = 285

>gnl|CDD|200387 TIGR04136, rSAM_FibroRumin, radical SAM peptide maturase, FibroRumin system

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 24/101 (23%)

Query: 31  IKDRKGLLKLLKQHDLKGIG-GILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYND 89
           IKD++ ++ L+ ++ +KG+G  I++ D R  LP                        YND
Sbjct: 268 IKDQQDVIDLIDEYGIKGLGFNIMMGDDRFPLPAD----------------------YND 305

Query: 90  KSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVD-YFSGAG 129
           K+AQ  +DE  +     I  D ++ ++++F     YFS   
Sbjct: 306 KAAQFIIDEFKELREIGIYEDRIMRKLKAFAKAQVYFSDCA 346

Members of this protein family are radical SAM enzymes proposed to act on small, Cys-rich peptides encoded by tandem gene pairs. Members occur in enzymes Fibrobacter succinogenes subsp. succinogenes S85 (genes for their target peptides missed) and in Ruminococcus albus 8. This enzyme family is similar in sequence to the SCIFF (Six Cysteines in Forty-Five) system maturase (TIGR03974). Length = 458

>gnl|CDD|153423 cd07977, TFIIE_beta_winged_helix, TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 3  WLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
          WL +EAL NNPKI+  +G  + FKP + I+
Sbjct: 47 WLKSEALVNNPKIDPKDG-TFSFKPKYNIR 75

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional domains, an N-terminal serine-rich region, a central core domain exhibiting a winged-helix structure capable of binding double-stranded DNA, a leucine repeat, a sigma3 region, and a C-terminal domain containing two basic regions. The assembly of transcription preinitiation complex (PIC) includes the general transcription factors and RNA polymerase II (pol II) initiated by the binding of the TBP subunit of TFIID to the TATA box, followed by either the sequential assembly of other general transcription factors and pol II or a preassembled pol II holoenzyme pathway. TFIIE interacts directly with TFIIF, TFIIB, pol II, and promoter DNA. TFIIE recruits TFIIH and regulates its activities. TFIIE and TFIIH are also important for the transition from initiation to elongation. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG3095|consensus	284		100.0
COG5174	285	TFA2 Transcription initiation factor IIE, beta sub	100.0
PF02186	65	TFIIE_beta: TFIIE beta subunit core domain; InterP	98.61
cd07977	75	TFIIE_beta_winged_helix TFIIE_beta_winged_helix do	98.26

>KOG3095|consensus

Probab=100.00  E-value=1.2e-42  Score=283.88  Aligned_cols=130  Identities=38%  Similarity=0.732  Sum_probs=117.6

Q ss_pred             hhhhhHhhhcCCceEEeeCCeEEeccCCCCCCHHHHHHHHHhcccCCCCceeehhhHhhhhhhHHHHhc----CeEEEEc
Q psy14241          2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKN----EIIYVTR   77 (136)
Q Consensus         2 ~~l~~e~L~~npKI~~~~~~~f~ykp~~~Ik~k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~~~i~~----~~i~V~r   77 (136)
                      +|+..|+|++||||+|+ .+||+|||+|+|||+++||++|++|+  +.|||+|+||+||||+|.++|++    +.|+|++
T Consensus       110 n~~l~esLkkNpri~~d-~~~FsfKp~y~Ird~~~Ll~llr~~~--~~~GI~v~DL~d~~pNv~~~lk~L~~s~eIl~l~  186 (284)
T KOG3095|consen  110 NWLLLESLKKNPRIEYD-PRTFSFKPTYNIRDKKQLLKLLRKHD--TLGGILVSDLKDAWPNVDEDLKELEKSGEILVLR  186 (284)
T ss_pred             cHHHHHHHhhCCceEec-CceeeccCccccCCHHHHHHHHHhcC--ccCceehHHhhhcccchHHHHHHHhcCCcEEEEe
Confidence            69999999999999999 55999999999999999999999985  59999999999999999999998    7777776


Q ss_pred             CC--CCceEEEecCCCCCCCCCHHHHHhhhhccCCc-hhh--HHHHhcCCCCCCcChhhhhc
Q psy14241         78 PA--DKRKVMFYNDKSAQLDLDEDFQKLWRSISVDG-MIL--RIRSFYGVDYFSGAGEKAEK  134 (136)
Q Consensus        78 ~~--d~~~vvf~ND~~~~~~vD~efk~lW~~v~vP~-~~d--~~L~~~Glkp~~~~~~~~~~  134 (136)
                      +.  ++++||||||.+|.+.||+||++|||+|.||+ +.+  ++|+++||+||++..+++.+
T Consensus       187 t~~d~k~kivf~ND~~~~~~VDdEFk~LWr~V~Ip~~~~dle~eL~k~GLkp~~~v~p~~~~  248 (284)
T KOG3095|consen  187 TPKDDKPKIVFYNDKSCSFSVDDEFKKLWRSVTIPSMELDLEEELQKQGLKPMKDVDPKKAA  248 (284)
T ss_pred             ccCCCCCceEEecCCCCCcccCHHHHHHHHhCCCChHHHHHHHHHHHhCCCcccccchHHhh
Confidence            64  68999999999999999999999999999998 445  99999999999954444443

>COG5174 TFA2 Transcription initiation factor IIE, beta subunit [Transcription]

Probab=100.00  E-value=5.3e-36  Score=240.50  Aligned_cols=127  Identities=19%  Similarity=0.363  Sum_probs=119.3

Q ss_pred             hHhhhcCCceEEeeC-CeEEeccCCCCCCHHHHHHHHHhcccCCCCceeehhhHhhhhhhHHHHhc----CeEEEEcCC-
Q psy14241          6 TEALQNNPKIEVIEG-NKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKN----EIIYVTRPA-   79 (136)
Q Consensus         6 ~e~L~~npKI~~~~~-~~f~ykp~~~Ik~k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~~~i~~----~~i~V~r~~-   79 (136)
                      .++|+.+.||.|++. +||.|+|.|+|||.++||++|+.  |.++.||++++|+||||+|...|++    ++|+|+|++ 
T Consensus       117 v~Llkk~~ri~~d~~~~Tf~fkply~irS~~~llk~lrs--q~t~~Gls~k~L~Dgwpnv~~~veeLek~~eIliLrt~k  194 (285)
T COG5174         117 VLLLKKKRRIRIDATHSTFMFKPLYSIRSVEDLLKVLRS--QGTEEGLSMKKLMDGWPNVVPFVEELEKSNEILILRTDK  194 (285)
T ss_pred             HHHHhhccCceeccCCceEEeeccccccCHHHHHHHHHh--hcccccccHHHhhcCCCcccHHHHHHhhcCcEEEEeecC
Confidence            357999999999987 79999999999999999999999  5999999999999999999999998    899999974 


Q ss_pred             CC-ceEEEecCCCCCCCCCHHHHHhhhhccCCchhh--HHHHhcCCCCCCcChhhhhc
Q psy14241         80 DK-RKVMFYNDKSAQLDLDEDFQKLWRSISVDGMIL--RIRSFYGVDYFSGAGEKAEK  134 (136)
Q Consensus        80 d~-~~vvf~ND~~~~~~vD~efk~lW~~v~vP~~~d--~~L~~~Glkp~~~~~~~~~~  134 (136)
                      |+ +++||+|+.++.++||+||++||++|.+|...|  ++|..+|||||+++|..++.
T Consensus       195 Dg~p~~vW~n~~n~~c~vD~ef~~~W~~V~ip~~~dL~reL~~~GLKptsvdp~t~KR  252 (285)
T COG5174         195 DGSPVVVWNNTQNLECPVDPEFKSLWNQVRIPTYHDLIRELNTAGLKPTSVDPNTKKR  252 (285)
T ss_pred             CCCceEEEeCCCCcCCCCCHHHHHHHHhCCCchHHHHHHHHHhcCCCccccCcchhcc
Confidence            64 899999999999999999999999999999998  99999999999999987764

>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH

Probab=98.61  E-value=2.1e-08  Score=66.60  Aligned_cols=25  Identities=44%  Similarity=0.721  Sum_probs=18.2

Q ss_pred             HhhhcCCceEEeeCC-eEEeccCCCC
Q psy14241          7 EALQNNPKIEVIEGN-KYIFKPVFKI   31 (136)
Q Consensus         7 e~L~~npKI~~~~~~-~f~ykp~~~I   31 (136)
                      +.|++||||+|+|+| +|+|||+|+|
T Consensus        40 ~~Lk~npKI~~d~~~~~f~fkp~ynI   65 (65)
T PF02186_consen   40 QWLKNNPKIEYDPDGNTFSFKPKYNI   65 (65)
T ss_dssp             HHHHH-TTEEEE-TT-CEEE--TTT-
T ss_pred             HHHHcCCCEEEecCCCEEEeccCCCC
Confidence            567799999999996 9999999997

In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.

>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

Probab=98.26  E-value=5.4e-07  Score=61.30  Aligned_cols=30  Identities=47%  Similarity=0.925  Sum_probs=28.0

Q ss_pred             hhhhhHhhhcCCceEEeeCCeEEeccCCCCC
Q psy14241          2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK   32 (136)
Q Consensus         2 ~~l~~e~L~~npKI~~~~~~~f~ykp~~~Ik   32 (136)
                      +||..+++.|||++... +|||+|||+|+||
T Consensus        46 ~~L~~~~~~~n~~~~~~-~~tf~fkP~y~Ir   75 (75)
T cd07977          46 EWLKSEALVNNPKIDPK-DGTFSFKPKYNIR   75 (75)
T ss_pred             HHHHhhhhccCceeccC-CCEEEeccCCCCC
Confidence            69999999999999987 7899999999997

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1d8j_A	81	Solution Structure Of The Central Core Domain Of Tf		2e-05

>pdb|1D8J|A Chain A, Solution Structure Of The Central Core Domain Of Tfiie Beta Length = 81

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 2  KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
          +WL TEAL NNPKIEVI+G KY FKP + ++
Sbjct: 52 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVR 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1d8j_A	81	General transcription factor TFIIE-beta; winged he	1e-08

>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A Length = 81

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 2  KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
          +WL TEAL NNPKIEVI+G KY FKP + ++
Sbjct: 52 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVR 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1d8j_A	81	General transcription factor TFIIE-beta; winged he	99.0
2dk8_A	81	DNA-directed RNA polymerase III 39 kDa polypeptide	83.67

>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A

Probab=99.00  E-value=1.3e-10  Score=79.36  Aligned_cols=30  Identities=63%  Similarity=1.123  Sum_probs=28.9

Q ss_pred             hhhhhHhhhcCCceEEeeCCeEEeccCCCCC
Q psy14241          2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK   32 (136)
Q Consensus         2 ~~l~~e~L~~npKI~~~~~~~f~ykp~~~Ik   32 (136)
                      +||+.|||++||||++. +|+|+|||+|+||
T Consensus        52 ~wL~~eaL~~npkI~~~-dgkf~fkP~y~ik   81 (81)
T 1d8j_A           52 QWLMTEALVNNPKIEVI-DGKYAFKPKYNVR   81 (81)
T ss_dssp             HHHHTTHHHHCTTEEEC-SSSEEECCTTTCC
T ss_pred             HHHHHHHhhcCCceEEe-CCceeccCCcCcC
Confidence            79999999999999999 9999999999986

>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85

Probab=83.67  E-value=2.7  Score=28.05  Aligned_cols=41  Identities=22%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhcccCCCCceeehhhHhhhhhhH-----HHHhc----CeEEEEcC
Q psy14241         34 RKGLLKLLKQHDLKGIGGILLDDVRESLPHCE-----KALKN----EIIYVTRP   78 (136)
Q Consensus        34 k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~-----~~i~~----~~i~V~r~   78 (136)
                      .+.+|++++++    +.||+-++|....|++.     .+|++    +.|-+.+.
T Consensus        16 e~~IL~l~~~~----P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~   65 (81)
T 2dk8_A           16 ENRIIELCHQF----PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRS   65 (81)
T ss_dssp             HHHHHHHHHHC----SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred             HHHHHHHHHhC----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            45699999998    89999999999999933     44444    77777765

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1d8ja_	81	a.4.5.18 (A:) The central core domain of TFIIE bet	6e-10

>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: The central core domain of TFIIE beta
domain: The central core domain of TFIIE beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 6e-10
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 2  KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
          +WL TEAL NNPKIEVI+G KY FKP + ++
Sbjct: 52 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVR 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1d8ja_	81	The central core domain of TFIIE beta {Human (Homo	99.07

>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: The central core domain of TFIIE beta
domain: The central core domain of TFIIE beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2e-11  Score=81.14  Aligned_cols=30  Identities=63%  Similarity=1.123  Sum_probs=28.8

Q ss_pred             hhhhhHhhhcCCceEEeeCCeEEeccCCCCC
Q psy14241          2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK   32 (136)
Q Consensus         2 ~~l~~e~L~~npKI~~~~~~~f~ykp~~~Ik   32 (136)
                      +||+.|||+|||||++. +|+|+|||+|+||
T Consensus        52 ~WL~~EAL~nNPKi~v~-dgKf~Fkp~Y~ik   81 (81)
T d1d8ja_          52 QWLMTEALVNNPKIEVI-DGKYAFKPKYNVR   81 (81)
T ss_dssp             HHHHTTHHHHCTTEEEC-SSSEEECCTTTCC
T ss_pred             HHHHhhhcccCCceeec-CCeeeecCCcccC
Confidence            79999999999999998 9999999999996