Psyllid ID: psy14260

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQPDDIK
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccEEEEEEccEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccEEEEEEccEEEEEcccccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRvnkynsddyetianfsrpfaIHIYhrqkqpddik
Flexible Loop (DISEMBL)
maqmknkvlvkpvvqnLYDITVFENNlfvtswrnqsIIRVNKYNSDDYETIANFSRPFAIHIyhrqkqpddik
Low Complexity Region (SEG)
MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQPDDIK
Disordered region (IsUnstruct)
*******VLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYH*********
Disordered Region (DISOPRED)
****KNK*LVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQP****
Disordered Region (DISEMBL)
MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHR********
Disordered Region (DISPRO)
****KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQK******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQPDDIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q91ZX7	4545	Prolow-density lipoprotei	yes	N/A	0.780	0.012	0.396	6e-09
Q07954	4544	Prolow-density lipoprotei	yes	N/A	0.780	0.012	0.396	6e-09
P98157	4543	Low-density lipoprotein r	yes	N/A	0.780	0.012	0.396	6e-09
P98164	4655	Low-density lipoprotein r	no	N/A	0.712	0.011	0.377	4e-07
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.917	0.014	0.362	7e-07
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.753	0.011	0.410	2e-06
P98158	4660	Low-density lipoprotein r	no	N/A	0.712	0.011	0.339	3e-05
P98163	1984	Putative vitellogenin rec	no	N/A	0.876	0.032	0.265	3e-05
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.863	0.033	0.359	3e-05
Q8VI56	1905	Low-density lipoprotein r	no	N/A	0.863	0.033	0.359	3e-05

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct: 410 LIEHLYGLTVFENYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 469

Query: 67  KQP 69
           +QP
Sbjct: 470 RQP 472

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.
Mus musculus (taxid: 10090)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct: 409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 468

Query: 67  KQP 69
           +QP
Sbjct: 469 RQP 471

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct: 411 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 470

Query: 67  KQP 69
           +QP
Sbjct: 471 RQP 473

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 18   YDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQP 69
            + IT+FE+ ++ T W  +++ + NKY+  + +T+ N + RPF IH+YH  +QP
Sbjct: 3411 FAITIFEDTIYWTDWNTRTVEKGNKYDGSNRQTLVNTTHRPFDIHVYHPYRQP 3463

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 3   QMKNK--VLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAI 60
           Q KN+  V+    V++LY ITVFE+ L+ T+  N +I+R+N++N  D  ++      + I
Sbjct: 400 QGKNRHTVIQGRQVRHLYGITVFEDYLYATNSDNYNIVRINRFNGTDIHSLIKIENAWGI 459

Query: 61  HIYHRQKQP 69
            IY ++ QP
Sbjct: 460 RIYQKRTQP 468

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQP 69
           V++LY ITVFE+ L+ TS  N +IIR+N++N  D  +I        I  Y ++ QP
Sbjct: 413 VKHLYGITVFEDYLYATSSDNFNIIRINRFNGTDIHSIIKMESARGIRTYQKRTQP 468

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 18   YDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQP 69
            + +T+FE+ +F T W  +++ + NKY+      + N + +PF IH+YH  +QP
Sbjct: 3413 FALTIFEDTVFWTDWNTRTVEKGNKYDGSGRVVLVNTTHKPFDIHVYHPYRQP 3465

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila melanogaster GN=yl PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 39/64 (60%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           + ++  ++++ Y + +FE+ L+ + W  +S+   +K++  D+  +A     +A+HIYH  
Sbjct: 596 RTVLDGMLKHPYGLAIFEDQLYWSDWATKSVHACHKFSGKDHRILAKDRTIYAVHIYHPA 655

Query: 67  KQPD 70
           KQP+
Sbjct: 656 KQPN 659

Involved in uptake of vitellogenin by endocytosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I N    P  IH  H 
Sbjct: 633 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 692

Query: 66  QKQP 69
           Q+QP
Sbjct: 693 QRQP 696

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I N    P  IH  H 
Sbjct: 633 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 692

Query: 66  QKQP 69
           Q+QP
Sbjct: 693 QRQP 696

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
242018517	4603	low-density lipoprotein receptor, putati	0.863	0.013	0.765	8e-22
328702065	2150	PREDICTED: low-density lipoprotein recep	0.794	0.026	0.633	9e-16
427796811	4696	Putative prolow-density lipoprotein rece	0.767	0.011	0.578	8e-14
321462894	4592	hypothetical protein DAPPUDRAFT_307561 [	0.808	0.012	0.55	9e-14
170035892	4695	very low-density lipoprotein receptor [C	0.767	0.011	0.403	2e-09
270010181	4576	hypothetical protein TcasGA2_TC009548 [T	0.753	0.012	0.446	6e-09
291242827	1350	PREDICTED: low density lipoprotein-relat	0.945	0.051	0.410	2e-08
432112067	4213	Prolow-density lipoprotein receptor-rela	0.780	0.013	0.412	8e-08
431914039	4544	Prolow-density lipoprotein receptor-rela	0.780	0.012	0.412	8e-08
426226765	4536	PREDICTED: LOW QUALITY PROTEIN: prolow-d	0.780	0.012	0.412	8e-08

>gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 57/64 (89%), Gaps = 1/64 (1%)

Query: 7   KVLVKPV-VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHR 65
           KV+ K V VQNLYDITVFEN+LFVTSWRN +IIR+NK+NS+DYETI NFSRPF+IH  HR
Sbjct: 278 KVIRKGVPVQNLYDITVFENDLFVTSWRNFTIIRLNKFNSNDYETIGNFSRPFSIHAVHR 337

Query: 66  QKQP 69
           Q+QP
Sbjct: 338 QRQP 341

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702065|ref|XP_001946912.2| PREDICTED: low-density lipoprotein receptor-related protein 1-like [Acyrthosiphon pisum]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 51/60 (85%), Gaps = 2/60 (3%)

Query: 12  PVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYET-IANFSRPFAIHIYHRQKQPD 70
           PV+ NLYDI+VFEN+++VTSWR QS+I++NK+N   YE+ I N SRPF IH+YHRQ+QP+
Sbjct: 459 PVI-NLYDISVFENHMYVTSWRLQSVIKLNKFNGSYYESLITNLSRPFTIHVYHRQEQPE 517

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHRQKQP 69
           ++NLY ITVFEN L+VTSW + S++ V+KYN  D  T+ AN +RPF+IH+YHRQ++P
Sbjct: 476 MRNLYGITVFENYLYVTSWHSNSVVVVHKYNQSDIRTVKANLTRPFSIHVYHRQRKP 532

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHRQKQPDDI 72
           V+NLY I++FEN+L+VT+WRN+S+ R+NKY  +    + +N SRPF+IH YHRQ+QP+ I
Sbjct: 305 VRNLYGISLFENDLYVTNWRNESVYRINKYTGESVLALKSNKSRPFSIHAYHRQRQPEGI 364

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035892|ref|XP_001845800.1| very low-density lipoprotein receptor [Culex quinquefasciatus] gi|167878399|gb|EDS41782.1| very low-density lipoprotein receptor [Culex quinquefasciatus]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 42/57 (73%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQPD 70
           +Q+L+ + VFE N+F+ SW+N+SI+ ++K+ ++      N SR + +H++HRQKQP+
Sbjct: 499 LQSLHTVNVFETNIFLASWKNRSIVAIDKFTAEARLVATNVSRAYHLHVFHRQKQPE 555

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQP 69
           VQNLY I+VF+  L+++SW +  II ++K+   +   + N SRPF + +YHRQ+QP
Sbjct: 456 VQNLYGISVFQRKLYLSSWYSNDIIELDKFTMKEKILVQNISRPFNVLVYHRQRQP 511

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291242827|ref|XP_002741307.1| PREDICTED: low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor)-like [Saccoglossus kowalevskii]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYH 64
           +  V+    V +LY IT+FE++L+VT+W + SI++VNKYN          SR  A+H+YH
Sbjct: 435 RRTVVQGQTVAHLYGITIFESSLYVTNWHDNSIVKVNKYNGHSEVIKDGMSRAGALHVYH 494

Query: 65  RQKQP----DDIK 73
           + +QP    DD K
Sbjct: 495 QYRQPRTSKDDCK 507

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|432112067|gb|ELK35095.1| Prolow-density lipoprotein receptor-related protein 1 [Myotis davidii]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct: 378 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 437

Query: 67  KQP 69
           +QP
Sbjct: 438 RQP 440

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431914039|gb|ELK15301.1| Prolow-density lipoprotein receptor-related protein 1 [Pteropus alecto]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct: 409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 468

Query: 67  KQP 69
           +QP
Sbjct: 469 RQP 471

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426226765|ref|XP_004007507.1| PREDICTED: LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1 [Ovis aries]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 6/63 (9%)

Query: 13  VVQNLYDITVFENNLFVTSWRN------QSIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
           ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct: 389 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 448

Query: 67  KQP 69
           +QP
Sbjct: 449 RQP 451

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
UNIPROTKB|I3LMD6	780	LOC100514839 "Uncharacterized	0.780	0.073	0.412	1.9e-08
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.780	0.012	0.412	1.4e-07
UNIPROTKB|E1BGJ0	4544	LRP1 "Uncharacterized protein"	0.780	0.012	0.412	1.4e-07
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.780	0.012	0.412	1.4e-07
UNIPROTKB|P98157	4543	LRP1 "Low-density lipoprotein	0.890	0.014	0.369	2.9e-07
UNIPROTKB|Q07954	4544	LRP1 "Prolow-density lipoprote	0.780	0.012	0.396	3.7e-07
MGI|MGI:96828	4545	Lrp1 "low density lipoprotein	0.780	0.012	0.396	3.7e-07
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.780	0.012	0.396	3.7e-07
ZFIN|ZDB-GENE-030131-7126	4549	lrp1b "low density lipoprotein	0.780	0.012	0.380	3.7e-07
FB|FBgn0053087	4699	LRP1 "LDL receptor protein 1"	0.835	0.012	0.387	1.3e-06

UNIPROTKB|I3LMD6 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 140 (54.3 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct:   346 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 405

Query:    67 KQP 69
             +QP
Sbjct:   406 RQP 408

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct:   409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 468

Query:    67 KQP 69
             +QP
Sbjct:   469 RQP 471

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct:   409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 468

Query:    67 KQP 69
             +QP
Sbjct:   469 RQP 471

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS DY+ +    +  A+HIYH++
Sbjct:   409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQR 468

Query:    67 KQP 69
             +QP
Sbjct:   469 RQP 471

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/73 (36%), Positives = 49/73 (67%)

Query:     5 KNK-VLVKPV-VQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSR 56
             KN+  +++ + +++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +
Sbjct:   401 KNRHTIIQGILIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDK 460

Query:    57 PFAIHIYHRQKQP 69
               A+HIYH+++QP
Sbjct:   461 GGALHIYHQRRQP 473

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 25/63 (39%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct:   409 LIEHLYGLTVFENYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 468

Query:    67 KQP 69
             +QP
Sbjct:   469 RQP 471

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=NAS

GO:0042954 "lipoprotein transporter activity" evidence=NAS

GO:0034185 "apolipoprotein binding" evidence=IDA;IPI

GO:0004872 "receptor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070325 "lipoprotein particle receptor binding" evidence=IC

GO:0032429 "regulation of phospholipase A2 activity" evidence=ISS

GO:0032374 "regulation of cholesterol transport" evidence=ISS

GO:0032370 "positive regulation of lipid transport" evidence=ISS

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0043277 "apoptotic cell clearance" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=ISS

GO:0032403 "protein complex binding" evidence=IDA

GO:0097242 "beta-amyloid clearance" evidence=TAS

MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 25/63 (39%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct:   410 LIEHLYGLTVFENYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 469

Query:    67 KQP 69
             +QP
Sbjct:   470 RQP 472

GO:0002020 "protease binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0032370 "positive regulation of lipid transport" evidence=IMP

GO:0032374 "regulation of cholesterol transport" evidence=IMP

GO:0032403 "protein complex binding" evidence=ISO

GO:0032429 "regulation of phospholipase A2 activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051222 "positive regulation of protein transport" evidence=ISO

GO:0097242 "beta-amyloid clearance" evidence=IMP

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IMP

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 25/63 (39%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS +Y+ +    +  A+HIYH++
Sbjct:   410 LIEHLYGLTVFENYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQR 469

Query:    67 KQP 69
             +QP
Sbjct:   470 RQP 472

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-030131-7126 lrp1b "low density lipoprotein receptor-related protein 1b" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 24/63 (38%), Positives = 43/63 (68%)

Query:    13 VVQNLYDITVFENNLFVTSWRNQ------SIIRVNKYNSDDYETIANFSRPFAIHIYHRQ 66
             ++++LY +TVFEN L+ T+  N       S+IRVN++NS D++ +    +  A+H+YH++
Sbjct:   416 LIEHLYGLTVFENYLYATNSDNANMQPKTSVIRVNRFNSSDFQVVTRVDKGGALHVYHQR 475

Query:    67 KQP 69
             +QP
Sbjct:   476 RQP 478

GO:0005509 "calcium ion binding" evidence=IEA

GO:1901342 "regulation of vasculature development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0053087 LRP1 "LDL receptor protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query:    11 KPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANF-SRPFAIHIYHRQKQP 69
             K ++ + + I+VFEN ++ T WR  S+IR NK+N  D + +    S+PF I + H  +QP
Sbjct:  1526 KEILSHPFAISVFENYVYWTDWRTTSVIRANKWNGSDVQVLQRTQSQPFGIQVLHSSRQP 1585

Query:    70 DD 71
              D
Sbjct:  1586 WD 1587

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1214|consensus	1289		99.22
KOG1215|consensus	877		99.12
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.11
KOG1214|consensus	1289		98.86
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.75
KOG1215|consensus	877		98.45
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.38
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	94.84
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.24
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.52
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	89.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	88.97
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.92
KOG4499|consensus	310		86.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	86.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	81.15

>KOG1214|consensus

Probab=99.22  E-value=1.2e-11  Score=87.00  Aligned_cols=63  Identities=16%  Similarity=0.319  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC--CcceEEEEec
Q psy14260          2 AQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS--RPFAIHIYHR   65 (73)
Q Consensus         2 dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~   65 (73)
                      ||+.||+|.++ +++||+|+-+++.+|||||+..+|.+++++.++.....+..-  ..+||+++-+
T Consensus      1186 ~g~gRR~i~~~-LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~ 1250 (1289)
T KOG1214|consen 1186 DGTGRRVIQNN-LQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYP 1250 (1289)
T ss_pred             CCCcchhhhhc-ccCceeeeeccccceeeccccCceEEeeccccccccccccccccceEEEEeccc
Confidence            79999998775 899999999999999999999999999999988777766443  8899987653

>KOG1215|consensus

Probab=99.12  E-value=4.3e-10  Score=79.81  Aligned_cols=72  Identities=24%  Similarity=0.478  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeE-EEecCC-CcceEEEE-ecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYE-TIANFS-RPFAIHIY-HRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~-~~~~~~-~~~~i~v~-h~~~qp~~~~   73 (73)
                      |||.+|+++....+.|||++++|++++||+||...++.+..+..|.+ + .+.... .+..+.++ |...||.+.|
T Consensus       597 ~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n  671 (877)
T KOG1215|consen  597 MDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSD-SRTSRSNLAQPLDIILVHHSSSRPTGVN  671 (877)
T ss_pred             cCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCc-ceeeecccCcccceEEEeccccCCCCCC
Confidence            68999994445589999999999999999999999999999888877 3 222333 77776666 7777776644

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.11  E-value=5.5e-10  Score=52.63  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=33.1

Q ss_pred             CEEEEEeCCCC-eEEEEeCcCCCCeEEEecC-C-CcceEEEEe
Q psy14260         25 NNLFVTSWRNQ-SIIRVNKYNSDDYETIANF-S-RPFAIHIYH   64 (73)
Q Consensus        25 ~~lywtDw~~~-~i~~~~k~~g~~~~~~~~~-~-~~~~i~v~h   64 (73)
                      ++|||+||... .|.+++ ++|++++++... . .|.+|.|++
T Consensus         1 ~~iYWtD~~~~~~I~~a~-~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERAN-LDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEE-TTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEE-CCCCCeEEEEECCCCCcCEEEECC
Confidence            58999999999 999888 788888877755 4 999999863

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1214|consensus

Probab=98.86  E-value=5.9e-09  Score=73.89  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             CCCCCeEEEEcCCCCCceEEE--EECCEEEEEeCCCC--eEEEEeCcCCCCeEEEecCC--CcceEEEEecCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDIT--VFENNLFVTSWRNQ--SIIRVNKYNSDDYETIANFS--RPFAIHIYHRQK   67 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~--vfe~~lywtDw~~~--~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~~~   67 (73)
                      |||+.|++++...+-.|-+|.  .+...||||||...  .|.+++ +.|+|++++++..  .|+|+++.--.+
T Consensus      1097 LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~-mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1097 LDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSS-MDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred             cCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeec-cCCccceEEeecccCCCCCceeCcccc
Confidence            799999999988888998776  68999999999865  588888 7899999888764  899988754443

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.75  E-value=6.4e-08  Score=44.70  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             EEcCCCCCc--eEEEEECCEEEEEeCCCCeEEEEeCcCCCC
Q psy14260          9 LVKPVVQNL--YDITVFENNLFVTSWRNQSIIRVNKYNSDD   47 (73)
Q Consensus         9 v~~~~~~~p--~~l~vfe~~lywtDw~~~~i~~~~k~~g~~   47 (73)
                      ++...+.+|  ++++..++.|||+|+....|.+++ ++|.+
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~-~~g~~   42 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN   42 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEe-CCCCC
Confidence            444567888  556689999999999999999988 55543

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1215|consensus

Probab=98.45  E-value=3.1e-07  Score=65.52  Aligned_cols=51  Identities=33%  Similarity=0.509  Sum_probs=46.6

Q ss_pred             EEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCC
Q psy14260         19 DITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDI   72 (73)
Q Consensus        19 ~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~   72 (73)
                      +|++|++.+||+|   ++|.+.+|.+|++...+.... .|+.++++|+.+||...
T Consensus        73 ~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (877)
T KOG1215|consen   73 ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAP  124 (877)
T ss_pred             eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCC
Confidence            9999999999999   789999999999999888776 78999999999999764

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.38  E-value=6.8e-07  Score=41.94  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=21.7

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF   23 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf   23 (73)
                      |||++|++|+...+.+|.||||+
T Consensus        19 ~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen   19 LDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TTSTSEEEEEESSTSSEEEEEEE
T ss_pred             CCCCCeEEEEECCCCCcCEEEEC
Confidence            79999999999999999999986

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=94.84  E-value=0.12  Score=21.76  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.0

Q ss_pred             CCceEEEE-ECCEEEEEeCCCCeEEE
Q psy14260         15 QNLYDITV-FENNLFVTSWRNQSIIR   39 (73)
Q Consensus        15 ~~p~~l~v-fe~~lywtDw~~~~i~~   39 (73)
                      ..|.+|++ -++.||-+|...+.|+.
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence            57999998 57899999999888764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.24  E-value=0.69  Score=24.94  Aligned_cols=45  Identities=11%  Similarity=0.200  Sum_probs=26.4

Q ss_pred             EEEEEC--CEEEEEeCC-----------------CCeEEEEeCcCCCCeEEEecCC-CcceEEEEe
Q psy14260         19 DITVFE--NNLFVTSWR-----------------NQSIIRVNKYNSDDYETIANFS-RPFAIHIYH   64 (73)
Q Consensus        19 ~l~vfe--~~lywtDw~-----------------~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h   64 (73)
                      +++|-.  +.||+||..                 ++.+++.|.. .+..+++..+. .|+||.+-.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~-t~~~~vl~~~L~fpNGVals~   66 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS-TKETTVLLDGLYFPNGVALSP   66 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT-TTEEEEEEEEESSEEEEEE-T
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC-CCeEEEehhCCCccCeEEEcC
Confidence            456655  499999975                 2456666643 33455666666 899998754

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.54  E-value=0.66  Score=20.50  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEE
Q psy14260         24 ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHI   62 (73)
Q Consensus        24 e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v   62 (73)
                      +++||-+++..++|..++.-++.....+.....|.+|.+
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            578999999999998888655544444444336777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.52  E-value=2.4  Score=25.95  Aligned_cols=31  Identities=19%  Similarity=0.080  Sum_probs=26.4

Q ss_pred             CCCCceEEEEE--CCEEEEEeCCCCeEEEEeCc
Q psy14260         13 VVQNLYDITVF--ENNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        13 ~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~   43 (73)
                      .+..|.+|++-  ++.||++|...+.|++.+..
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEecc
Confidence            47889999976  56899999999999999854

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=89.84  E-value=1.6  Score=28.97  Aligned_cols=43  Identities=7%  Similarity=-0.001  Sum_probs=34.1

Q ss_pred             EEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEE
Q psy14260          7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYET   50 (73)
Q Consensus         7 ~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~   50 (73)
                      ++|++ .+..|.+.-.+++.||.+|+.++.+.+++.-+|+...+
T Consensus       196 evl~~-GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V  238 (335)
T TIGR03032       196 EVVAS-GLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV  238 (335)
T ss_pred             CEEEc-CccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence            34445 47789999999999999999999999999666654443

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=88.97  E-value=3  Score=31.56  Aligned_cols=30  Identities=13%  Similarity=0.187  Sum_probs=24.8

Q ss_pred             CCCceEEEEE--CCEEEEEeCCCCeEEEEeCc
Q psy14260         14 VQNLYDITVF--ENNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        14 ~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~   43 (73)
                      +..|.+|++-  ++.||++|..++.|.+++..
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence            4579999986  46899999999999988843

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.92  E-value=2.3  Score=22.72  Aligned_cols=40  Identities=20%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy14260          2 AQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNK   42 (73)
Q Consensus         2 dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k   42 (73)
                      ||+..+++.. .+..|.||++-  +++||-++-..++|....+
T Consensus        42 d~~~~~~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   42 DGKEVKVVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eCCEeEEeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            6777776655 47899999974  6899999988888876543

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4499|consensus

Probab=86.48  E-value=5.1  Score=25.96  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             CCeEEEEcC------CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260          4 MKNKVLVKP------VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIAN   53 (73)
Q Consensus         4 ~~r~~v~~~------~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~   53 (73)
                      +||++|..-      ...-|=|+++- |..||-+-|....+++++-.+|+-..++.-
T Consensus       195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl  251 (310)
T KOG4499|consen  195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL  251 (310)
T ss_pred             cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence            688888752      22334567753 789999999999999999999987766553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=86.35  E-value=5.6  Score=24.32  Aligned_cols=45  Identities=16%  Similarity=0.056  Sum_probs=28.8

Q ss_pred             ceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEEE
Q psy14260         17 LYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIY   63 (73)
Q Consensus        17 p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v~   63 (73)
                      |-+++..  ++.|||+|-..+.|++++..++ ....+... .|.++.+.
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~-~~~~~~~~-~~~G~~~~   48 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG-EVEVIDLP-GPNGMAFD   48 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEESS-SEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCC-eEEEEecC-CCceEEEE
Confidence            3456666  5999999999999999986544 33332222 25555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=81.15  E-value=10  Score=28.82  Aligned_cols=37  Identities=11%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             cCCCCCceEEEE--ECCEEEEEeCCCCeEEEEeCcCCCCe
Q psy14260         11 KPVVQNLYDITV--FENNLFVTSWRNQSIIRVNKYNSDDY   48 (73)
Q Consensus        11 ~~~~~~p~~l~v--fe~~lywtDw~~~~i~~~~k~~g~~~   48 (73)
                      .+++..|-++++  .++.||.+|...+.|.+++ .+|...
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d-~~G~~i  602 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTD-LDGNFI  602 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEe-CCCCEE
Confidence            345778888887  4789999999999999988 455443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		3e-06
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		3e-06
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		3e-05
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-05
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		3e-05
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		3e-05

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I N    P  IH  H 
Sbjct: 281 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 340
Query: 66  QKQP 69
           Q+QP
Sbjct: 341 QRQP 344

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I N    P  IH  H 
Sbjct: 238 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 66  QKQP 69
           Q+QP
Sbjct: 298 QRQP 301

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
           + +VK  + + + +T+FE+ L+ T W   SI+  NKY  +    I ++   P  IH + +
Sbjct: 198 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 257
Query: 66  QKQPD 70
           Q+QP+
Sbjct: 258 QRQPN 262

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
           + +VK  + + + +T+FE+ L+ T W   SI+  NKY  +    I ++   P  IH + +
Sbjct: 198 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 257
Query: 66  QKQPD 70
           Q+QP+
Sbjct: 258 QRQPN 262

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
           + +VK  + + + +T+FE+ L+ T W   SI+  NKY  +    I ++   P  IH + +
Sbjct: 206 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 265
Query: 66  QKQPD 70
           Q+QP+
Sbjct: 266 QRQPN 270

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
           + +VK  + + + +T+FE+ L+ T W   SI+  NKY  +    I ++   P  IH + +
Sbjct: 201 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 260
Query: 66  QKQPD 70
           Q+QP+
Sbjct: 261 QRQPN 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-14
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	8e-11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	4e-10
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	8e-10
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	5e-09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	1e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	5e-05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 64.9 bits (157), Expect = 2e-14
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP 
Sbjct: 602 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 659

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 64.4 bits (156), Expect = 3e-14
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H+  QP 
Sbjct: 584 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPR 641

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 55.5 bits (133), Expect = 4e-11
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I      P  IH  H 
Sbjct: 281 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 340

Query: 66  QKQPDDIK 73
           Q+QP    
Sbjct: 341 QRQPAGKN 348

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 54.5 bits (131), Expect = 8e-11
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAIHI 62
             +  V   +Q  + +T +  NL+ T W+  S+I ++   S + +T      +R + I I
Sbjct: 199 PGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258

Query: 63  YHRQKQ 68
              Q  
Sbjct: 259 ALSQCP 264

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 52.7 bits (126), Expect = 4e-10
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDDI 72
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP  +
Sbjct: 208 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV 267

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 51.6 bits (123), Expect = 8e-10
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
           + +VK  + + + +T+FE+ L+ T W   SI+  NKY  +    I  +   P  IH + +
Sbjct: 201 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 260

Query: 66  QKQP 69
           Q+QP
Sbjct: 261 QRQP 264

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 49.5 bits (117), Expect = 5e-09
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDD 71
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP  
Sbjct: 290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG 348

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 48.3 bits (114), Expect = 1e-08
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
           K ++   + + + ITVFE++L+ T W  +SI   NK+   + E I      P  IH  H 
Sbjct: 238 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297

Query: 66  QKQP 69
           Q+QP
Sbjct: 298 QRQP 301

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 45.2 bits (106), Expect = 2e-07
 Identities = 12/65 (18%), Positives = 31/65 (47%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYH 64
             +VLV+  + +++  T+  + ++ T W+ +SI RV+K +++    I        +   +
Sbjct: 512 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 571

Query: 65  RQKQP 69
             +  
Sbjct: 572 VHRVI 576

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 43.3 bits (101), Expect = 8e-07
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 18  YDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDDI 72
           + +T+FE+ L+ T W   SI+  NKY  +    I  +   P  IH + +Q+QP+  
Sbjct: 217 FALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 272

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 38.2 bits (88), Expect = 5e-05
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 7   KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
            VL    +     +TVFEN L+    + Q I +++    +    +    ++   IH    
Sbjct: 512 IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 571

Query: 66  QKQPD 70
               +
Sbjct: 572 LNLQE 576

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIY 63
            N+ ++   + + + +T +++ ++ T W  +SI R NK +  +   I  +      I ++
Sbjct: 198 LNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVF 257

Query: 64  HRQKQPD 70
           H  +Q  
Sbjct: 258 HSSRQSG 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.77
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.71
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.68
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.99
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.9
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.74
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.27
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.59
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.97
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.43
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.41
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	93.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	93.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.42
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	92.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	92.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.0
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	90.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	89.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	89.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	88.76
3kya_A	496	Putative phosphatase; structural genomics, joint c	88.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	88.28
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	87.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	87.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	86.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	86.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	86.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	85.02
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	84.99
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	84.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	84.09
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	84.05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	83.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	82.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	82.17
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	81.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	80.94

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.77  E-value=4.5e-18  Score=107.51  Aligned_cols=73  Identities=27%  Similarity=0.567  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++++...+.+|++|+++++.+||+||..+.|.++++.+|+..+++.... .|++|+++|+.+||.+.|
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~~~n  268 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN  268 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSCCCCC
T ss_pred             CCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEecccccccccc
Confidence            5899999988767899999999999999999999999999999999988888776 999999999999997654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.77  E-value=4.3e-18  Score=108.37  Aligned_cols=73  Identities=32%  Similarity=0.537  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++++...+.||++|++++++|||+||..+.|.++++.+|+..+++.... .|++|+++|+.+||.+.|
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp~~~n  305 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKN  305 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSCCCCC
T ss_pred             CCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCccccC
Confidence            5899999988777899999999999999999999999999999999999988777 999999999999998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.77  E-value=3.7e-18  Score=110.43  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcC--CCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKP--VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~--~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++++..  .+.||++|++++++|||+||..+.|.+++|.+|+...++.... .|++|+++|+.+||.+.|
T Consensus       275 ~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp~~~n  350 (400)
T 3p5b_L          275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN  350 (400)
T ss_dssp             TTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSCCCCC
T ss_pred             CCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCCCCCC
Confidence            589999998874  5789999999999999999999999999999999999988777 899999999999997765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.76  E-value=7.4e-18  Score=116.91  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcC--CCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKP--VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~--~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++|+..  .+.||++|++++++|||+||.+..|++++|++|++..++.... .|++|+|||+.+||.+.|
T Consensus       587 ~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~~~N  662 (791)
T 3m0c_C          587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN  662 (791)
T ss_dssp             TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCC
T ss_pred             cCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCCCCC
Confidence            689999999874  6789999999999999999999999999999999999998777 999999999999998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.75  E-value=1.6e-17  Score=106.81  Aligned_cols=73  Identities=32%  Similarity=0.537  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++++...+.||++|+++++.|||+||..+.|.++++.+|+..+++.... .|++|+++|+.+||.+.|
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n  348 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKN  348 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCC
T ss_pred             CCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcC
Confidence            5899999888777899999999999999999999999999999999999988777 999999999999998765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.73  E-value=4.7e-18  Score=115.17  Aligned_cols=73  Identities=27%  Similarity=0.567  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|+++..+.+.||++|++|+++|||+||.+..|++++|++|++..++.... .|++|+++|+.+||.+.|
T Consensus       200 ~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n  273 (619)
T 3s94_A          200 LDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN  273 (619)
T ss_dssp             SSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCC
T ss_pred             CCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccc
Confidence            5899999988767899999999999999999999999999999999988887776 999999999999997643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.71  E-value=1.6e-16  Score=99.71  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcC--CCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKP--VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~--~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|+++...  .+.||++|++++++|||+||..+.|.++++++|+..+++.... .|++|+++|+.+||.+.|
T Consensus       193 ~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n  268 (316)
T 1ijq_A          193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN  268 (316)
T ss_dssp             TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCC
T ss_pred             cCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCCcccc
Confidence            589999998763  5789999999999999999999999999999999988888776 899999999999997644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.70  E-value=1.2e-16  Score=108.34  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQP   69 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp   69 (73)
                      +||++|++++...+.||+|||+++++|||+||...+|++++|.+| +.+++.... .|++|+++|+.+|+
T Consensus       508 ~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~  576 (619)
T 3s94_A          508 TDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVI  576 (619)
T ss_dssp             SSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCC
T ss_pred             cCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCCCCCceeeeccccccc
Confidence            589999999887789999999999999999999999999999999 667777666 89999999988776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.68  E-value=3.3e-16  Score=106.34  Aligned_cols=70  Identities=20%  Similarity=0.403  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDD   71 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~   71 (73)
                      +||++|+++.. .+.||++|++|+++|||+||..+.|.+++|.+|++.+++.... .|++|+++|+.+||..
T Consensus       195 ~dG~~~~v~~~-~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~  265 (628)
T 4a0p_A          195 MLGLNREVIAD-DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW  265 (628)
T ss_dssp             TTSCSCEEEEE-CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCC
T ss_pred             CCCCceEEeec-cCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccc
Confidence            58999976544 5889999999999999999999999999999999998888777 8999999999999853

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.66  E-value=6e-16  Score=105.09  Aligned_cols=68  Identities=18%  Similarity=0.187  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQ   68 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~q   68 (73)
                      +||++|+++....+.||++|++|+++|||+||...+|++++|.+|++...+.... .|++|.++|...|
T Consensus       506 ~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~  574 (628)
T 4a0p_A          506 LSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL  574 (628)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECCCCH
T ss_pred             CCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEeeccc
Confidence            5899999988777899999999999999999999999999999999999888877 8999999997654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.59  E-value=1e-15  Score=104.79  Aligned_cols=73  Identities=21%  Similarity=0.416  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcC--CCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCCC
Q psy14260          1 MAQMKNKVLVKP--VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDIK   73 (73)
Q Consensus         1 ~dG~~r~~v~~~--~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~~   73 (73)
                      +||++|++++..  .+.||++|++++++|||+||..+.|.++++++|+..+++.... .|++|+|+|+.+||.+.|
T Consensus       569 ~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~~~n  644 (699)
T 1n7d_A          569 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVN  644 (699)
T ss_dssp             SSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCCSCC
T ss_pred             cCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCCCCC
Confidence            589999998863  5789999999999999999999999999999998888777666 899999999999998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.01  E-value=4.7e-09  Score=66.15  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEec-CC-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FS-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~-~~-~~~~i~v~h   64 (73)
                      |||+.+++++...+..|.+|++-  ++.|||+|+....|++++ +.|.+++++.. .. .|++|.++.
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d-~dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN-LDGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEECSCCSCEEEEEEET
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc-CCCCceEEEecCCCCCceEEEEeC
Confidence            68999999887778999999985  899999999999999999 67888887775 34 899998864

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.99  E-value=1.5e-09  Score=68.33  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA   52 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~   52 (73)
                      +||++|+.|..+   ...+|++|||+|||+||.+.+|.+++ .+|.+..++.
T Consensus       253 ~DG~~r~~l~~~---~~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~~~l~  300 (302)
T 3s25_A          253 NDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTS-TQNPDTIKAL  300 (302)
T ss_dssp             TTSCCCEEEEES---CEEEEEECSSEEEEEETTTCCEEEEE-SSSCCSCEEC
T ss_pred             CCCCccEEeeCC---ccceEEEeCCEEEEEECCCCeEEEEE-CCCCCceEec
Confidence            699999998775   35689999999999999999999986 8888776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.96  E-value=7.8e-09  Score=66.80  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC---C-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF---S-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~---~-~~~~i~v~h   64 (73)
                      |||+.+++++...+.+|.+|++-  ++.|||+|+....|.+++ +.|.+++++...   . .|++|.++.
T Consensus       232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d-~dG~~~~~~~~~~~~l~~P~gl~v~~  300 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVFE  300 (400)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCCCEEEEECSSTTSSEEEEEEET
T ss_pred             CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe-CCCCccEEEEeCCCCCCCCEEEEEeC
Confidence            79999999888778999999986  799999999999999999 678887777643   3 789988754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.93  E-value=9.3e-09  Score=71.71  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=54.0

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC---C-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF---S-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~---~-~~~~i~v~h   64 (73)
                      |||+.|++++...+.+|.+|++-  ++.|||+|+....|.+++ +.|..+.++...   . .|++|.++.
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d-~dG~~~~~v~~~~~~l~~P~glav~~  612 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVFE  612 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEEECTTTTSSEEEEEEET
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe-cCCCceEEEecCCCccCCCCEEEEeC
Confidence            79999999988788999999976  899999999999999999 678888877753   3 788888754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.90  E-value=1.1e-08  Score=64.94  Aligned_cols=62  Identities=15%  Similarity=0.278  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC-C-CcceEEEE
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF-S-RPFAIHIY   63 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~-~-~~~~i~v~   63 (73)
                      |||+.+++++...+..|.+|++-  ++.|||+|+....|.+++ +.|.+++++... . .|++|.++
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~-~dG~~~~~~~~~~~~~P~giav~  254 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN-LDGSHRKAVISQGLPHPFAITVF  254 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEECSSCSSEEEEEEE
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe-CCCCceEEEEeCCCCCceEEEEE
Confidence            68999998877678899999985  899999999999999999 678777766644 4 89999884

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.89  E-value=1.3e-08  Score=65.38  Aligned_cols=62  Identities=15%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEcCCCCCceEEEE--ECCEEEEEeCCCCeEEEEeCcCCCCeEEEecC-C-CcceEEEE
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITV--FENNLFVTSWRNQSIIRVNKYNSDDYETIANF-S-RPFAIHIY   63 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~v--fe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~-~-~~~~i~v~   63 (73)
                      |||+.+++++...+..|.+|++  .++.|||+|+....|.+++ +.|.+++++... . .|.+|.++
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d-~dG~~~~~~~~~~~~~P~giav~  297 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN-LDGSHRKAVISQGLPHPFAITVF  297 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC-TTSCSCEEEECSSCSSEEEEEEE
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe-CCCCeeEEEEECCCCCceEEEEE
Confidence            6899999988777889999998  4899999999999999999 677777766643 4 89999884

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=4.5e-08  Score=61.23  Aligned_cols=62  Identities=21%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC---C-CcceEEEE
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF---S-RPFAIHIY   63 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~---~-~~~~i~v~   63 (73)
                      |||+.++++....+.+|.+|++-  ++.|||+|+....|.+++ +.|.+++++...   . .|.+|.++
T Consensus       150 ~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d-~dg~~~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             CCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEe-cCCCceEEEeecCCccCCcEEEEEE
Confidence            68999998877678899999986  789999999999999999 668887777642   3 79999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.74  E-value=9.3e-08  Score=57.79  Aligned_cols=67  Identities=25%  Similarity=0.436  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC--CcceEEEEecCCCCC
Q psy14260          2 AQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS--RPFAIHIYHRQKQPD   70 (73)
Q Consensus         2 dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~~~qp~   70 (73)
                      ||..++.++. ...+|++|++.+++|||+||....|.+++..+|+....+....  .|.+|.+..... |.
T Consensus       197 ~g~~~~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~-~~  265 (267)
T 1npe_A          197 AQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC-PQ  265 (267)
T ss_dssp             TEEEEEEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC---
T ss_pred             CCCceEEEec-CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC-CC
Confidence            5666666665 4689999999999999999999999999987787777776443  699999876433 44

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.47  E-value=3.9e-07  Score=62.64  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC---C-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF---S-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~---~-~~~~i~v~h   64 (73)
                      |||+.+++++...+..|.+|++-  ++.|||+|+....|.+++ +.|.+++++...   . .|.+|.++.
T Consensus       526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d-~dG~~~~~~~~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC-SSSSCCEEECCCSSSCSSCCCCEEET
T ss_pred             CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc-cCCCceEEEEecCCcCCCceEeEEEC
Confidence            68999988877678899999985  789999999999999999 668787777643   3 688877653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.27  E-value=1e-05  Score=48.74  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEE
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIY   63 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~   63 (73)
                      +||+.++++....+.+|.+|++-  +++|||+|+..+.|.+++. .|.....+.... .|.+|.+.
T Consensus       153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~-~g~~~~~~~~~~~~P~gi~~d  217 (267)
T 1npe_A          153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-AQPGRRKVLEGLQYPFAVTSY  217 (267)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TEEEEEEEEECCCSEEEEEEE
T ss_pred             cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec-CCCceEEEecCCCCceEEEEe
Confidence            57888887765567899999985  5799999999999999984 455555555444 78888654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.59  E-value=0.00019  Score=44.97  Aligned_cols=50  Identities=14%  Similarity=0.219  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEe-CCCCeEEEEeCcCCCCeEEEecC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTS-WRNQSIIRVNKYNSDDYETIANF   54 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtD-w~~~~i~~~~k~~g~~~~~~~~~   54 (73)
                      |||+++++|.+..+  | .+++.+++|||++ -....|.+++ ..|.+++.+...
T Consensus       214 ldG~~~~~Lt~~~~--~-~~~~~g~~Iy~~~~~~~~~i~~~~-~DG~~r~~l~~~  264 (302)
T 3s25_A          214 INNPNPVVLTEANI--E-HYNVYGSLIFYQRGGDNPALCVVK-NDGTGFKELAKG  264 (302)
T ss_dssp             SSSCCCEECSCSCE--E-EEEEETTEEEEEECSSSCEEEEEE-TTSCCCEEEEES
T ss_pred             CCCCCeEEEeCCCc--c-eEEECCCEEEEEECCCCcEEEEEE-CCCCccEEeeCC
Confidence            78999988765544  4 3888999999974 4456788888 778877776643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.97  E-value=0.085  Score=34.21  Aligned_cols=48  Identities=19%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             CCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEe-cC-C-CcceEEE
Q psy14260         14 VQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIA-NF-S-RPFAIHI   62 (73)
Q Consensus        14 ~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~-~~-~-~~~~i~v   62 (73)
                      ..+|.++++-  +++||++|+....|++++.. +.....+. .. . .|.+|.+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEECSSSSCCEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEEcCCCCcceeEEE
Confidence            5789999986  58999999999999999854 33332222 22 2 5666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.89  E-value=0.16  Score=29.67  Aligned_cols=49  Identities=16%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             CCCCceEEEEECC-EEEEEeCCCCeEEEEeCcCCCCeEEEec-CC-CcceEEE
Q psy14260         13 VVQNLYDITVFEN-NLFVTSWRNQSIIRVNKYNSDDYETIAN-FS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vfe~-~lywtDw~~~~i~~~~k~~g~~~~~~~~-~~-~~~~i~v   62 (73)
                      .+..|.+|++..+ .||++++..+.|.+.+. .|........ .. .|.+|.+
T Consensus       190 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~-~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          190 DITAPWGIAVDEAGTVYVTEHNTNQVVKLLA-GSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             SCCSEEEEEECTTCCEEEEETTTSCEEEECT-TCSCCEECCCCSCSCEEEEEE
T ss_pred             CCCCceEEEECCCCCEEEEECCCCcEEEEcC-CCCcceeeccCCCCCceeEEE
Confidence            4478999998765 99999999999999885 3443333222 22 5666654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.43  E-value=0.18  Score=32.82  Aligned_cols=48  Identities=10%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             CCCCceEEEEEC----CEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEE
Q psy14260         13 VVQNLYDITVFE----NNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vfe----~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v   62 (73)
                      .+..|.+|++-.    +.|||+|.. ..|.+++..+| ....+.... .|.+|.+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g-~v~~~~~~~~~P~giav  189 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ-YVDIKTTNIGQCADVNF  189 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTT-EEEEECCCCSCEEEEEE
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCC-EEEEeecCCCCccEEEE
Confidence            567899999874    899999998 88999984343 444444444 6776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.41  E-value=0.42  Score=30.60  Aligned_cols=38  Identities=13%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             CCCceEEEEE-CCEEEEEeC-CCCeEEEEeCcCCCCeEEEe
Q psy14260         14 VQNLYDITVF-ENNLFVTSW-RNQSIIRVNKYNSDDYETIA   52 (73)
Q Consensus        14 ~~~p~~l~vf-e~~lywtDw-~~~~i~~~~k~~g~~~~~~~   52 (73)
                      +.+|.+|++- ++.||++|+ ..+.|.+++..+|. ..++.
T Consensus       322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~  361 (409)
T 3hrp_A          322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVA  361 (409)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEE
T ss_pred             eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEe
Confidence            5789999987 456999999 99999999854553 34333

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=93.92  E-value=0.54  Score=28.75  Aligned_cols=39  Identities=13%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             CCCceEEEEEC--CEEEEEeCCCCeEEEEeCcCCCCeEEEe
Q psy14260         14 VQNLYDITVFE--NNLFVTSWRNQSIIRVNKYNSDDYETIA   52 (73)
Q Consensus        14 ~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~~g~~~~~~~   52 (73)
                      +.+|.+|++-.  +.||++|+....|.+.+..+|+....+.
T Consensus       195 ~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          195 FSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             ESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            35699999874  6999999999999998865576655553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=93.51  E-value=0.77  Score=28.31  Aligned_cols=39  Identities=8%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             CCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260         15 QNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN   53 (73)
Q Consensus        15 ~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~   53 (73)
                      .++.++++.++.||.++|..+.+..+|..+++-...+..
T Consensus        66 ~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~  104 (266)
T 2iwa_A           66 YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTH  104 (266)
T ss_dssp             CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEEC
Confidence            345578999999999999999999999766665555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.42  E-value=0.27  Score=31.82  Aligned_cols=48  Identities=8%  Similarity=0.041  Sum_probs=35.3

Q ss_pred             CCCCceEEEEE---CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEE
Q psy14260         13 VVQNLYDITVF---ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vf---e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v   62 (73)
                      .+..|.+|++-   ++.||++|.. ..|.+++ ..+.....+.... .|.+|.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id-~~~~~v~~~~~~~~~P~~ia~  186 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLID-FEKEYVSTVYSGLSKVRTICW  186 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEE-TTTTEEEEEECCCSCEEEEEE
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEE-CCCCEEEEEecCCCCcceEEE
Confidence            46799999987   5899999988 7888888 4454555555544 6777665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=92.70  E-value=0.81  Score=27.94  Aligned_cols=39  Identities=15%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             CCCCceEEEEE--CCEEEEEeC-CCCeEEEEeCcCCCCeEEEe
Q psy14260         13 VVQNLYDITVF--ENNLFVTSW-RNQSIIRVNKYNSDDYETIA   52 (73)
Q Consensus        13 ~~~~p~~l~vf--e~~lywtDw-~~~~i~~~~k~~g~~~~~~~   52 (73)
                      .+..|.+|++-  ++.||.+|. ....|.+.+ .+|.....+.
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~  182 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG  182 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence            34579999987  689999995 788999888 5666555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.53  E-value=0.65  Score=29.72  Aligned_cols=30  Identities=10%  Similarity=0.300  Sum_probs=24.9

Q ss_pred             Cce-EEEEE--CCEEEEEeCCCCeEEEEeCcCCC
Q psy14260         16 NLY-DITVF--ENNLFVTSWRNQSIIRVNKYNSD   46 (73)
Q Consensus        16 ~p~-~l~vf--e~~lywtDw~~~~i~~~~k~~g~   46 (73)
                      .|+ +|++-  ++.||++|.....|.+++ ..|.
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~-~~g~  299 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKIT-PDGE  299 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEEC-TTCC
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEe-cCCC
Confidence            478 99987  589999999999999998 4454

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.00  E-value=0.65  Score=26.97  Aligned_cols=29  Identities=10%  Similarity=0.237  Sum_probs=23.7

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCCeEEEEe
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQSIIRVN   41 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~~i~~~~   41 (73)
                      ....|.+|++- ++.||++|.....|.+.+
T Consensus       106 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  135 (270)
T 1rwi_B          106 GLNYPEGLAVDTQGAVYVADRGNNRVVKLA  135 (270)
T ss_dssp             SCSSEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CcCCCcceEECCCCCEEEEECCCCEEEEEE
Confidence            34679999986 568999999888898885

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.23  E-value=0.3  Score=31.70  Aligned_cols=28  Identities=7%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             CCCceEEEEE--CCEEEEEeCCCCeEEEEe
Q psy14260         14 VQNLYDITVF--ENNLFVTSWRNQSIIRVN   41 (73)
Q Consensus        14 ~~~p~~l~vf--e~~lywtDw~~~~i~~~~   41 (73)
                      +.+|.+|++.  ++.||.+|+.++.|.+++
T Consensus       401 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          401 FNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             CSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            5789999998  789999999999998876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.62  E-value=0.95  Score=27.42  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             CCceEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy14260         15 QNLYDITVF-ENNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        15 ~~p~~l~vf-e~~lywtDw~~~~i~~~~k~   43 (73)
                      ..|.++++- ++.|||+|.....|++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~   61 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPD   61 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCC
Confidence            679999974 56799999999999999843

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=90.50  E-value=1.3  Score=27.06  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             CCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEE
Q psy14260         15 QNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHI   62 (73)
Q Consensus        15 ~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v   62 (73)
                      ..|.+|++.++.+|.+.+..+.|..+|..+++....+.....|.+|.+
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~   91 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHF   91 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEE
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEE
Confidence            357889999999999999888999999877776666643226766665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=89.89  E-value=2.1  Score=25.85  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=26.3

Q ss_pred             CCCCceEEEEECCEEEEEeCCCCeEEEEeCc
Q psy14260         13 VVQNLYDITVFENNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        13 ~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~   43 (73)
                      .+..|.+|+.-+++||++|.....|.+.+..
T Consensus       167 ~~~~pngis~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          167 VFPAANGLKRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             CSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred             CCCcCCCcCcCCCEEEEEeCCCCEEEEEEeC
Confidence            4567899987888999999999999998843

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=89.38  E-value=2  Score=24.97  Aligned_cols=49  Identities=20%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEec-CC-CcceEEE
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~-~~-~~~~i~v   62 (73)
                      ....|.+|++- ++.||.++.....|.+.+. +|........ .. .|.+|.+
T Consensus       186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  237 (300)
T 2qc5_A          186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA  237 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence            45679999976 5689999998888998885 5543332222 12 4555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=88.76  E-value=2.7  Score=25.62  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             Cce--EEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260         16 NLY--DITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN   53 (73)
Q Consensus        16 ~p~--~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~   53 (73)
                      ++|  |+++.++.||-.+|..+.++..|..+.+...++..
T Consensus        64 ~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           64 PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            555  57899999999999999999999766665555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=88.46  E-value=1.3  Score=29.82  Aligned_cols=30  Identities=13%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             CCCceEEEEEC--CEEEEEeCCCCeEEEEeCc
Q psy14260         14 VQNLYDITVFE--NNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        14 ~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~   43 (73)
                      ..||+++++-.  ++||++|+....|++++.-
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            46899999865  7999999999999999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=88.28  E-value=1.2  Score=27.23  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=40.0

Q ss_pred             CCceEEEE--ECCEEEEEe----CCCCeEEEEeCcCCCCeEEEecCCCcceEEEEecCCCC
Q psy14260         15 QNLYDITV--FENNLFVTS----WRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQP   69 (73)
Q Consensus        15 ~~p~~l~v--fe~~lywtD----w~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v~h~~~qp   69 (73)
                      ..|.+|++  -++.||-++    +....|...+.. |+....+.....|.+|.-=|+...|
T Consensus       267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~~~~~~~  326 (328)
T 3dsm_A          267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWKLEHHHH  326 (328)
T ss_dssp             SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEECCCCCC
T ss_pred             CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEecccccc
Confidence            57999998  479999999    677788888854 7666665543378888776666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=87.68  E-value=3.5  Score=25.51  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             CCceE--EEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260         15 QNLYD--ITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN   53 (73)
Q Consensus        15 ~~p~~--l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~   53 (73)
                      ..+|+  |++.++.||-.+|..+.++..|..+++....+..
T Consensus        85 ~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~  125 (262)
T 3nol_A           85 KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY  125 (262)
T ss_dssp             TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence            35665  8999999999999999999999777766655553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.34  E-value=2.4  Score=26.54  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             CCceEEEEECCEEEEEeCCCCeEEEEeCc
Q psy14260         15 QNLYDITVFENNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        15 ~~p~~l~vfe~~lywtDw~~~~i~~~~k~   43 (73)
                      ..|.+++++++.+|.+++....|.+++..
T Consensus       268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          268 FPPGNLAFFRGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEEEEEE
T ss_pred             CCCcceEEECCEEEEEECCCCEEEEEEEC
Confidence            35789999999999999999999998743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=87.01  E-value=3.1  Score=24.19  Aligned_cols=34  Identities=26%  Similarity=0.193  Sum_probs=26.4

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCC
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDD   47 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~   47 (73)
                      ....|.+|++- ++.+|.++.....|.+.+. +|..
T Consensus       139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  173 (299)
T 2z2n_A          139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI  173 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence            34678999877 4589999998889999986 5543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=86.87  E-value=1.8  Score=29.12  Aligned_cols=30  Identities=7%  Similarity=0.152  Sum_probs=26.6

Q ss_pred             CCCCceEEEEEC--CEEEEEeCCCCeEEEEeC
Q psy14260         13 VVQNLYDITVFE--NNLFVTSWRNQSIIRVNK   42 (73)
Q Consensus        13 ~~~~p~~l~vfe--~~lywtDw~~~~i~~~~k   42 (73)
                      .+.+|.+|++-.  +.||.+|..++.|.+++.
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            467899999986  699999999999999873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=86.80  E-value=3.2  Score=24.14  Aligned_cols=49  Identities=18%  Similarity=0.233  Sum_probs=32.9

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEec-CC-CcceEEE
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~-~~-~~~~i~v   62 (73)
                      ....|.+|++- ++.||.+++....|.+.+. +|........ .. .|.+|.+
T Consensus       228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  279 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITF  279 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEE
T ss_pred             CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEe
Confidence            45679999976 4589999998889999885 5533322122 22 5666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=86.55  E-value=4.2  Score=25.28  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CceE--EEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260         16 NLYD--ITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN   53 (73)
Q Consensus        16 ~p~~--l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~   53 (73)
                      .+|+  +++.++.||-.+|..+.++.+|..+++...++..
T Consensus        95 ~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           95 NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            4565  9999999999999999999999776666555553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=85.02  E-value=3.3  Score=24.75  Aligned_cols=47  Identities=15%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             CCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEE
Q psy14260         15 QNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIH   61 (73)
Q Consensus        15 ~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~   61 (73)
                      ..|.+|++- ++.||.++|....|.+.+..+|+....+.... .|..+.
T Consensus       199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence            578999985 57899999998899999876677665555432 444433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=84.99  E-value=4.4  Score=24.19  Aligned_cols=39  Identities=10%  Similarity=0.097  Sum_probs=29.7

Q ss_pred             EEEEcCCCCCceEEEEEC--CEEEEEeCCCCeEEEEeCcCC
Q psy14260          7 KVLVKPVVQNLYDITVFE--NNLFVTSWRNQSIIRVNKYNS   45 (73)
Q Consensus         7 ~~v~~~~~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~~g   45 (73)
                      +.++......+-+.+...  +.|||+|.....|++.+..++
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~   45 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK   45 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCC
Confidence            344555567788888664  799999999999999985544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=84.61  E-value=4.7  Score=24.14  Aligned_cols=42  Identities=7%  Similarity=0.033  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCCCceEEEEEC--CEEEEEeCCCCeEEEEeCcCCC
Q psy14260          3 QMKNKVLVKPVVQNLYDITVFE--NNLFVTSWRNQSIIRVNKYNSD   46 (73)
Q Consensus         3 G~~r~~v~~~~~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~~g~   46 (73)
                      |...+.+.. ....+-+++...  ++|||+|.....|++.+. +|+
T Consensus        34 ~~~~~~l~~-~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~   77 (305)
T 3dr2_A           34 DARLLTLYD-QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT   77 (305)
T ss_dssp             TCCCEEEEC-CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC
T ss_pred             CCceEEEec-CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC
Confidence            334454444 467888888764  579999999999999885 554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=84.09  E-value=4.5  Score=23.47  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=26.3

Q ss_pred             CCCCceEEEEEC-CEEEEEeCCCCeEEEEeCcCCC
Q psy14260         13 VVQNLYDITVFE-NNLFVTSWRNQSIIRVNKYNSD   46 (73)
Q Consensus        13 ~~~~p~~l~vfe-~~lywtDw~~~~i~~~~k~~g~   46 (73)
                      ....|.+|++-. +.||++++....|.+++. +|.
T Consensus       181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            456789998763 679999998889999986 655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=84.05  E-value=4.8  Score=23.77  Aligned_cols=42  Identities=5%  Similarity=-0.069  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCCCCceEEEEEC--CEEEEEeCCCCeEEEEeCcCC
Q psy14260          3 QMKNKVLVKPVVQNLYDITVFE--NNLFVTSWRNQSIIRVNKYNS   45 (73)
Q Consensus         3 G~~r~~v~~~~~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~~g   45 (73)
                      |...+++. .....|-+++.-.  +.|||++...+.|.+.+..++
T Consensus        17 ~~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~   60 (296)
T 3e5z_A           17 GAEARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ   60 (296)
T ss_dssp             TCCCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC
T ss_pred             CCcEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC
Confidence            33445444 4467889988763  469999999999999885544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=83.03  E-value=5.1  Score=23.39  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEec--CC-CcceEEE
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIAN--FS-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~--~~-~~~~i~v   62 (73)
                      ...+|.+|++- ++.+|.++.....|.+.+ ..|+....+..  .. .|.+|.+
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEc-CCCCEEEEeCCCCccCCcEEEEE
Confidence            34679999975 457999999888899887 44554444432  12 4555544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=82.37  E-value=6.5  Score=24.12  Aligned_cols=39  Identities=15%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             CCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEe
Q psy14260         14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA   52 (73)
Q Consensus        14 ~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~   52 (73)
                      +..|+.|+..++.||-..|.+..|.++|-.+|+-...+.
T Consensus       151 ~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          151 VIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             CCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             cccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            346788887799999999999999999988887666654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=82.17  E-value=3.4  Score=25.37  Aligned_cols=39  Identities=8%  Similarity=0.064  Sum_probs=28.8

Q ss_pred             CCCCceEEEEEC-CEEEEEeCC-----CCeEEEEeCcCCCCeEEE
Q psy14260         13 VVQNLYDITVFE-NNLFVTSWR-----NQSIIRVNKYNSDDYETI   51 (73)
Q Consensus        13 ~~~~p~~l~vfe-~~lywtDw~-----~~~i~~~~k~~g~~~~~~   51 (73)
                      .+.+|+++++-. +.|||+|..     ...|.+.+..+|+-...+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~  109 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVI  109 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEE
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEE
Confidence            357899999864 789999976     468888886566534443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=81.26  E-value=6.1  Score=23.05  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCCceEEEEEC-CEEEEEeCCCCeEEEEeCcCCCCeEEEecC--C-CcceEEE
Q psy14260         13 VVQNLYDITVFE-NNLFVTSWRNQSIIRVNKYNSDDYETIANF--S-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vfe-~~lywtDw~~~~i~~~~k~~g~~~~~~~~~--~-~~~~i~v   62 (73)
                      ....|.+|++-. +.+|.+|.....|...+. .|+....+...  . .|.+|.+
T Consensus       162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~  214 (286)
T 1q7f_A          162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI  214 (286)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEE
T ss_pred             ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEE
Confidence            456799999764 689999998889988884 55544444322  2 4555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=80.94  E-value=7  Score=23.55  Aligned_cols=30  Identities=10%  Similarity=0.048  Sum_probs=24.4

Q ss_pred             CCCceEEEEEC--CEEEEEeCCCCeEEEEeCc
Q psy14260         14 VQNLYDITVFE--NNLFVTSWRNQSIIRVNKY   43 (73)
Q Consensus        14 ~~~p~~l~vfe--~~lywtDw~~~~i~~~~k~   43 (73)
                      +..|.+|++-.  +.||++|.....|.+.+..
T Consensus       184 ~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          184 LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             ESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             CccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            56899999874  4799999988899988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-12
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-10

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP 
Sbjct: 208 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 265

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (123), Expect = 2e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAIHI 62
             +  V   +Q  + +T +  NL+ T W+  S+I ++   S + +T      +R + I I
Sbjct: 199 PGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258

Query: 63  YHRQ 66
              Q
Sbjct: 259 ALSQ 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.82
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.66
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.86
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	85.72
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	82.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	81.27

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.7e-20  Score=112.37  Aligned_cols=71  Identities=21%  Similarity=0.404  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcC--CCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCC
Q psy14260          1 MAQMKNKVLVKP--VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDD   71 (73)
Q Consensus         1 ~dG~~r~~v~~~--~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~   71 (73)
                      +||++|+++...  .+.+|++|++++++|||+||...+|++++|.+|++.+.+.... .|++|+|||+.+||.+
T Consensus       193 ~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP~g  266 (266)
T d1ijqa1         193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG  266 (266)
T ss_dssp             TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCC
T ss_pred             CCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCccCCCC
Confidence            589999998864  5689999999999999999999999999999999999888777 8999999999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.6e-17  Score=100.42  Aligned_cols=65  Identities=25%  Similarity=0.417  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC--CcceEEEEecC
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS--RPFAIHIYHRQ   66 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~~   66 (73)
                      +||++|++|+.+ +.||++|++++++||||||..++|.+++|.+|+...++....  .|+||+|+|++
T Consensus       196 ~~g~~~~~v~~~-~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~~  262 (263)
T d1npea_         196 PAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (263)
T ss_dssp             TTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCCCCeEEEECC-CCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCCC
Confidence            589999998875 789999999999999999999999999999998888777543  89999999964

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.5e-10  Score=69.01  Aligned_cols=63  Identities=14%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h   64 (73)
                      |||+++++++...+..|.+|++-  ++.|||+|.....|.+++ ++|.+++++.... .|++|.++.
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~-~~g~~~~~v~~~~~~P~~lav~~  218 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN-PAQPGRRKVLEGLQYPFAVTSYG  218 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTEEEEEEEEECCCSEEEEEEET
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE-CCCCCeEEEECCCCCcEEEEEEC
Confidence            79999999888778899999975  789999999999999999 7788888888776 899998874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.6e-10  Score=66.38  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC---C-CcceEEEEe
Q psy14260          1 MAQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANF---S-RPFAIHIYH   64 (73)
Q Consensus         1 ~dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~---~-~~~~i~v~h   64 (73)
                      |||+++++++...+..|.+|++-  ++.|||+|.....|.+++ ++|.++..+...   . .|.+|.++.
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~-~dG~~~~~~~~~~~~~~~p~~lav~~  218 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVFE  218 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEEECTTTTSSEEEEEEET
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEE-CCCCCEEEEEeCCCcccccEEEEEEC
Confidence            79999999887778999999985  789999999999999999 678887776543   2 688888875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=0.0001  Score=43.06  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcCCCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEecC-C-CcceEEEE
Q psy14260          2 AQMKNKVLVKPVVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIANF-S-RPFAIHIY   63 (73)
Q Consensus         2 dG~~r~~v~~~~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~-~-~~~~i~v~   63 (73)
                      ||+.+.++....+.+|.+|++. ++.||++|+....|.+++. .+.....+... . .|.+|.+.
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~-~~~~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA-GSTTSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT-TCSCCEECCCCSCCCEEEEEEC
T ss_pred             ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC-CCCeEEEEccCCCCCeEEEEEe
Confidence            5666665544577899999985 4699999999999999874 34444444333 3 78888763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.37  E-value=0.0025  Score=36.90  Aligned_cols=42  Identities=12%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCCCceEEEEEC-CEEEEEeCCCCeEEEEeCcC
Q psy14260          3 QMKNKVLVKPVVQNLYDITVFE-NNLFVTSWRNQSIIRVNKYN   44 (73)
Q Consensus         3 G~~r~~v~~~~~~~p~~l~vfe-~~lywtDw~~~~i~~~~k~~   44 (73)
                      |....++....+..|.+|++-. +.||++||..+.|.+++.+.
T Consensus       212 ~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         212 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            3334443334667899999875 58999999999999987553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.92  E-value=0.41  Score=27.30  Aligned_cols=49  Identities=16%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             CCCCceEEEEEC-CEEEEEeCCCCeEEEEeCcCCCCeEEEecC--C-CcceEEE
Q psy14260         13 VVQNLYDITVFE-NNLFVTSWRNQSIIRVNKYNSDDYETIANF--S-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vfe-~~lywtDw~~~~i~~~~k~~g~~~~~~~~~--~-~~~~i~v   62 (73)
                      ....|.++++-. +.+|++|+....|...+ .+|+....+...  . .|.+|.+
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d-~~G~~~~~~g~~g~~~~P~giav  207 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNYPIGVGI  207 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEE-TTCCEEEEESCTTTSCSEEEEEE
T ss_pred             cccccceeeeccceeEEeeeccccceeeee-cCCceeeeecccccccCCccccc
Confidence            567889999875 58999999999999877 456655555432  2 5777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.34  E-value=0.48  Score=27.01  Aligned_cols=49  Identities=4%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CCCCceEEEEE-CCEEEEEeCCCC-eEEEEeCcCCCCeEEEecC--C-CcceEEE
Q psy14260         13 VVQNLYDITVF-ENNLFVTSWRNQ-SIIRVNKYNSDDYETIANF--S-RPFAIHI   62 (73)
Q Consensus        13 ~~~~p~~l~vf-e~~lywtDw~~~-~i~~~~k~~g~~~~~~~~~--~-~~~~i~v   62 (73)
                      ...+|.+|++- ++.||.+|+... .|...+ -+|+...++...  . .|.+|.+
T Consensus       198 ~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         198 ITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             TSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             cccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence            56789999973 567999998655 455444 456655555433  2 5666655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.54  E-value=0.35  Score=28.32  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             eEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEE
Q psy14260         18 YDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHI   62 (73)
Q Consensus        18 ~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v   62 (73)
                      -++++- +..|||+|-..+.|++++..++.......... .|.+|.+
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~   89 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI   89 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEE
Confidence            466653 45799999999999999854433334443333 6777654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.86  E-value=0.32  Score=28.54  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=29.4

Q ss_pred             CCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEe
Q psy14260          2 AQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVN   41 (73)
Q Consensus         2 dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~   41 (73)
                      ||...+.+.. .+..|.+|++-  ++.||++|...+.|++.+
T Consensus       165 dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d  205 (319)
T d2dg1a1         165 DFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIA  205 (319)
T ss_dssp             TSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEE
Confidence            4555455444 46789999975  568999999999999886

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.08  E-value=0.34  Score=27.97  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             CCCCceEEEEECCEEEEEeCCCCeEEEEeCcC
Q psy14260         13 VVQNLYDITVFENNLFVTSWRNQSIIRVNKYN   44 (73)
Q Consensus        13 ~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~   44 (73)
                      ...+|.+|+..++++|+++.....|++++...
T Consensus       163 ~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         163 VFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             CSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             cccccccccccCCceeeecCCCCeEEeccccc
Confidence            34567899999999999999999999987543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.72  E-value=1.1  Score=25.80  Aligned_cols=23  Identities=0%  Similarity=-0.013  Sum_probs=19.1

Q ss_pred             CCEEEEEeCCCCeEEEEeCcCCC
Q psy14260         24 ENNLFVTSWRNQSIIRVNKYNSD   46 (73)
Q Consensus        24 e~~lywtDw~~~~i~~~~k~~g~   46 (73)
                      ++.|||+|-....|++.+--+|.
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~   51 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGR   51 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCEEEEEECCCCEEEEEECCCCe
Confidence            68999999999999999855443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=82.83  E-value=2.3  Score=23.12  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=32.2

Q ss_pred             CCceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcce
Q psy14260         15 QNLYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFA   59 (73)
Q Consensus        15 ~~p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~   59 (73)
                      ..|.++++-  +.+||.+.+..+.|...|-.+|+-..++.-...|.+
T Consensus       244 ~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~P~~  290 (301)
T d1l0qa2         244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYA  290 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEC
T ss_pred             CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCCCcE
Confidence            578888874  468999999999998888767765555543324544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=81.27  E-value=3.1  Score=23.62  Aligned_cols=45  Identities=13%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             CCceEEEEECC-EEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEE
Q psy14260         15 QNLYDITVFEN-NLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIH   61 (73)
Q Consensus        15 ~~p~~l~vfe~-~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~   61 (73)
                      ..|-++++-.| .||.+|...+.|++++ -.|+ .+.+.... .|.+|.
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~-p~g~-~~~~~~~~~~~~gla   74 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSIT-PDGN-QQIHATVEGKVSGLA   74 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEC-TTCC-EEEEEECSSEEEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEe-CCCC-EEEEEcCCCCcceEE
Confidence            45778887655 9999999999999998 3343 34443333 566554