Psyllid ID: psy14279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccHHHHHHHHccccccEEEEEcccHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHcccHHHHHHHHHHHcccHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYagevnvsqdqlpsFLKTADRLKIKglaeapqssvkreg
Flexible Loop (DISEMBL)
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIkglaeapqssvkreg
Low Complexity Region (SEG)
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG
Disordered region (IsUnstruct)
******FCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTA********************
Disordered Region (DISOPRED)
***SEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK**************
Disordered Region (DISEMBL)
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA***********
Disordered Region (DISPRO)
*****QFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGL************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q7KRI2	127	Longitudinals lacking pro	yes	N/A	0.753	0.433	0.732	4e-17
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.876	0.059	0.413	5e-09
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.739	0.068	0.407	2e-07
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.739	0.056	0.407	3e-07
P42283	891	Longitudinals lacking pro	no	N/A	0.739	0.060	0.407	3e-07
Q86B87	610	Modifier of mdg4 OS=Droso	no	N/A	0.506	0.060	0.594	3e-07
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.739	0.061	0.407	4e-07
P42284	549	Longitudinals lacking pro	no	N/A	0.739	0.098	0.407	4e-07
Q24174	904	Protein abrupt OS=Drosoph	no	N/A	0.630	0.050	0.521	5e-07
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.739	0.055	0.407	7e-07

>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster GN=lolal PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P SS+KREG
Sbjct: 73  ILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP-SSIKREG 127

Required, together with Trl, for maintaining the repressed state of target genes including homeotic genes Scr and Ubx. May also be involved in the activation of homeotic genes. Binds to a DNA Polycomb response element (PRE) at the bithorax complex. Also binds to polytene chromosomes at several hundred sites, many of which are shared with Trl and ph-p. Required during embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 11/75 (14%)

Query: 8   CHQFLEALFY---------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58
           C  + +ALFY         ++ D ++  L  ++EFMY GE+NV QDQ+   LK A+ LKI
Sbjct: 244 CSPYFQALFYDNPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKI 303

Query: 59  KGLAEAPQSSVKREG 73
           +GLAE   S+ + EG
Sbjct: 304 RGLAEV--SAGRGEG 316

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q86B87|MMD4_DROME Modifier of mdg4 OS=Drosophila melanogaster GN=mod(mdg4) PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 27  LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           L D+++FMY GEVNV QD LP+F+ TA+ L+IKGL +
Sbjct: 82  LKDLIQFMYCGEVNVKQDALPAFISTAESLQIKGLTD 118

Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may control the nature of the repressive effect of su(Hw): in the absence of mod(mdg4) protein, su(Hw) exerts a bidirectional silencing effect, whereas in the presence of mod(mdg4), the silencing effect is unidirectional. Isoform H is specifically required to maintain the pairing of achiasmate homologs in male meiosis I which is mediated by the rDNA repeats on the achiasmate X-Y bivalents. Isoform H also plays a role in apoptotic regulatory pathways.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q24174|ABRU_DROME Protein abrupt OS=Drosophila melanogaster GN=ab PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           ++ D     + ++L FMY GEVNVS +QLP FLKTA  L+I+GLA+
Sbjct: 143 ILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLAD 188

Expression is vital for development; may be involved in transcriptional regulation. In embryos, muscle specific expression is required for segmental nerve b (SNb) motoneuron target recognition within ventral longitudinal muscles. Has a role in establishing and maintaining embryonic muscle attachments, adult sensory cell formation (macrochaetae) and morphogenesis of adult appendages (legs, antenna aristae and male external genitalia). Has a role in the morphogenesis of the class I dendritic neurons: selective expression of ab in class I da neurons plays a pivotal role in forming dendritic arbors, which are characteristic of the class I cells. The development of more complex arbors of class II-IV neurons depends on the absence of ab.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 10  QFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           Q+ +   +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct: 64  QYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
242010402	127	abrupt protein, putative [Pediculus huma	0.753	0.433	0.785	4e-17
156550568	127	PREDICTED: longitudinals lacking protein	0.753	0.433	0.732	7e-16
110756044	127	PREDICTED: longitudinals lacking protein	0.753	0.433	0.732	7e-16
322802841	109	hypothetical protein SINV_10955 [Solenop	0.753	0.504	0.732	7e-16
17865642	127	lola like, isoform A [Drosophila melanog	0.753	0.433	0.732	2e-15
195150907	126	GL10513 [Drosophila persimilis] gi|19533	0.753	0.436	0.732	2e-15
31200901	126	AGAP011247-PA [Anopheles gambiae str. PE	0.753	0.436	0.696	2e-15
225717820	128	Longitudinals lacking protein-like [Cali	0.739	0.421	0.727	2e-15
225719214	128	Longitudinals lacking protein-like [Cali	0.739	0.421	0.727	3e-15
157125571	126	abrupt protein [Aedes aegypti] gi|157125	0.753	0.436	0.696	3e-15

>gi|242010402|ref|XP_002425957.1| abrupt protein, putative [Pediculus humanus corporis] gi|212509940|gb|EEB13219.1| abrupt protein, putative [Pediculus humanus corporis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D  F HL  ILEFMYAGEVNVSQDQLP+FLKTADRLK+KGLAEAPQ S+KREG
Sbjct: 73  ILKDVPFSHLQAILEFMYAGEVNVSQDQLPAFLKTADRLKVKGLAEAPQ-SIKREG 127

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550568|ref|XP_001603477.1| PREDICTED: longitudinals lacking protein-like isoform 1 [Nasonia vitripennis] gi|345488630|ref|XP_003425953.1| PREDICTED: longitudinals lacking protein-like isoform 2 [Nasonia vitripennis] gi|307166782|gb|EFN60744.1| Longitudinals lacking protein-like [Camponotus floridanus] gi|307207491|gb|EFN85202.1| Longitudinals lacking protein-like [Harpegnathos saltator] gi|332021216|gb|EGI61601.1| Longitudinals lacking protein-like protein [Acromyrmex echinatior]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 48/56 (85%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D  + HL  ILEFMYAGEVNVSQDQLP+FLKTADRLK+KGLAEAP  ++KREG
Sbjct: 73  ILKDVAYSHLQAILEFMYAGEVNVSQDQLPAFLKTADRLKVKGLAEAP-GAIKREG 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110756044|ref|XP_001120198.1| PREDICTED: longitudinals lacking protein-like [Apis mellifera] gi|340712770|ref|XP_003394928.1| PREDICTED: longitudinals lacking protein-like [Bombus terrestris] gi|350409197|ref|XP_003488648.1| PREDICTED: longitudinals lacking protein-like [Bombus impatiens] gi|380021548|ref|XP_003694625.1| PREDICTED: longitudinals lacking protein-like [Apis florea] gi|383847541|ref|XP_003699411.1| PREDICTED: longitudinals lacking protein-like [Megachile rotundata]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 48/56 (85%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D  + HL  ILEFMYAGEVNVSQDQLP+FLKTADRLK+KGLAEAP  ++KREG
Sbjct: 73  ILKDVAYSHLQAILEFMYAGEVNVSQDQLPAFLKTADRLKVKGLAEAP-GAIKREG 127

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802841|gb|EFZ23037.1| hypothetical protein SINV_10955 [Solenopsis invicta]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 48/56 (85%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D  + HL  ILEFMYAGEVNVSQDQLP+FLKTADRLK+KGLAEAP  ++KREG
Sbjct: 55  ILKDVAYSHLQAILEFMYAGEVNVSQDQLPAFLKTADRLKVKGLAEAP-GAIKREG 109

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17865642|ref|NP_524778.1| lola like, isoform A [Drosophila melanogaster] gi|24654826|ref|NP_725756.1| lola like, isoform B [Drosophila melanogaster] gi|24654830|ref|NP_725757.1| lola like, isoform C [Drosophila melanogaster] gi|24654834|ref|NP_725758.1| lola like, isoform D [Drosophila melanogaster] gi|281363640|ref|NP_001163186.1| lola like, isoform E [Drosophila melanogaster] gi|386768235|ref|NP_001246402.1| lola like, isoform F [Drosophila melanogaster] gi|386768237|ref|NP_001246403.1| lola like, isoform G [Drosophila melanogaster] gi|194753378|ref|XP_001958989.1| GF12279 [Drosophila ananassae] gi|194880979|ref|XP_001974626.1| GG20988 [Drosophila erecta] gi|195123556|ref|XP_002006271.1| GI20951 [Drosophila mojavensis] gi|195381699|ref|XP_002049583.1| GJ20673 [Drosophila virilis] gi|195429549|ref|XP_002062820.1| GK19492 [Drosophila willistoni] gi|195487586|ref|XP_002091971.1| GE13931 [Drosophila yakuba] gi|195584489|ref|XP_002082037.1| GD25412 [Drosophila simulans] gi|73621174|sp|Q7KRI2.1|LOLAL_DROME RecName: Full=Longitudinals lacking protein-like; Short=Lola-like protein; AltName: Full=Protein Batman gi|12007119|gb|AAG45054.1|AF308476_1 batman protein [Drosophila melanogaster] gi|7302659|gb|AAF57739.1| lola like, isoform A [Drosophila melanogaster] gi|16648276|gb|AAL25403.1| LD14505p [Drosophila melanogaster] gi|21626476|gb|AAM68179.1| lola like, isoform B [Drosophila melanogaster] gi|21626477|gb|AAM68180.1| lola like, isoform C [Drosophila melanogaster] gi|21626478|gb|AAM68181.1| lola like, isoform D [Drosophila melanogaster] gi|190620287|gb|EDV35811.1| GF12279 [Drosophila ananassae] gi|190657813|gb|EDV55026.1| GG20988 [Drosophila erecta] gi|193911339|gb|EDW10206.1| GI20951 [Drosophila mojavensis] gi|194144380|gb|EDW60776.1| GJ20673 [Drosophila virilis] gi|194158905|gb|EDW73806.1| GK19492 [Drosophila willistoni] gi|194178072|gb|EDW91683.1| GE13931 [Drosophila yakuba] gi|194194046|gb|EDX07622.1| GD25412 [Drosophila simulans] gi|220942400|gb|ACL83743.1| lolal-PA [synthetic construct] gi|220952644|gb|ACL88865.1| lolal-PA [synthetic construct] gi|257286279|gb|ACV53086.1| MIP07390p [Drosophila melanogaster] gi|272432537|gb|ACZ94458.1| lola like, isoform E [Drosophila melanogaster] gi|289741675|gb|ADD19585.1| hypothetical conserved protein [Glossina morsitans morsitans] gi|383302569|gb|AFH08155.1| lola like, isoform F [Drosophila melanogaster] gi|383302570|gb|AFH08156.1| lola like, isoform G [Drosophila melanogaster]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P SS+KREG
Sbjct: 73  ILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP-SSIKREG 127

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150907|ref|XP_002016391.1| GL10513 [Drosophila persimilis] gi|195335493|ref|XP_002034398.1| GM19923 [Drosophila sechellia] gi|198457686|ref|XP_001360761.2| GA19096 [Drosophila pseudoobscura pseudoobscura] gi|194110238|gb|EDW32281.1| GL10513 [Drosophila persimilis] gi|194126368|gb|EDW48411.1| GM19923 [Drosophila sechellia] gi|198136068|gb|EAL25336.2| GA19096 [Drosophila pseudoobscura pseudoobscura]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P SS+KREG
Sbjct: 72  ILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP-SSIKREG 126

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31200901|ref|XP_309398.1| AGAP011247-PA [Anopheles gambiae str. PEST] gi|30178468|gb|EAA05153.2| AGAP011247-PA [Anopheles gambiae str. PEST]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P +++KREG
Sbjct: 72  ILKDVSYNHLQAILEFMYAGEVNVSQEQLPTFLKTADRLKVKGLAETP-TNIKREG 126

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225717820|gb|ACO14756.1| Longitudinals lacking protein-like [Caligus clemensi]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 50/55 (90%), Gaps = 1/55 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 72
           ++ D  F+HLT ILEFMYAGEVNV+QDQLP+FLKTA+RLK+KGLAEAPQ ++K+E
Sbjct: 75  ILKDVPFQHLTAILEFMYAGEVNVAQDQLPAFLKTAERLKVKGLAEAPQ-TIKQE 128

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225719214|gb|ACO15453.1| Longitudinals lacking protein-like [Caligus clemensi]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 50/55 (90%), Gaps = 1/55 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 72
           ++ D  F+HLT ILEFMYAGEVNV+QDQLP+FLKTA+RLK+KGLAEAPQ ++K+E
Sbjct: 75  ILKDVPFQHLTAILEFMYAGEVNVAQDQLPAFLKTAERLKVKGLAEAPQ-TIKQE 128

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125571|ref|XP_001654392.1| abrupt protein [Aedes aegypti] gi|157125573|ref|XP_001654393.1| abrupt protein [Aedes aegypti] gi|170037621|ref|XP_001846655.1| BTB/POZ and Kelch domain-containing protein [Culex quinquefasciatus] gi|94468928|gb|ABF18313.1| BTB/POZ and Kelch domain-containing protein [Aedes aegypti] gi|108873571|gb|EAT37796.1| AAEL010244-PA [Aedes aegypti] gi|108873572|gb|EAT37797.1| AAEL010244-PB [Aedes aegypti] gi|167880866|gb|EDS44249.1| BTB/POZ and Kelch domain-containing protein [Culex quinquefasciatus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 18  VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
           ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P +++KREG
Sbjct: 72  ILKDVSYSHLQAILEFMYAGEVNVSQEQLPTFLKTADRLKVKGLAETP-TNIKREG 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.753	0.433	0.732	8.6e-17
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.794	0.072	0.477	7.3e-09
FB|FBgn0029824	676	CG3726 [Drosophila melanogaste	0.630	0.068	0.586	2.6e-08
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.876	0.059	0.44	2e-07
FB|FBgn0264981	1089	mamo "maternal gene required f	0.945	0.063	0.459	2.1e-07
FB|FBgn0002781	610	mod(mdg4) "modifier of mdg4" [	0.547	0.065	0.581	3.4e-07
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.630	0.047	0.531	1.1e-06
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.643	0.048	0.446	1.6e-06
FB|FBgn0264442	904	ab "abrupt" [Drosophila melano	0.630	0.050	0.521	2.5e-06
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.739	0.056	0.418	2.6e-06

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 41/56 (73%), Positives = 49/56 (87%)

Query:    18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKREG 73
             ++ D ++ HL  ILEFMYAGEVNVSQ+QLP+FLKTADRLK+KGLAE P SS+KREG
Sbjct:    73 ILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP-SSIKREG 127

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 32/67 (47%), Positives = 42/67 (62%)

Query:     8 CHQFLEALF---------YVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58
             C  + +ALF          ++ D  +  L  +++FMY GEVNVSQ+QLP  LKTA+ LKI
Sbjct:    52 CSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKI 111

Query:    59 KGLAEAP 65
             KGLAE P
Sbjct:   112 KGLAEMP 118

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0029824 CG3726 [Drosophila melanogaster (taxid:7227)]

 Score = 138 (53.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query:    18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
             ++ D TF  +  ++EFMY GE+NV    LPS LKTAD LKIKGLAE
Sbjct:    72 IMKDVTFAEVKCLIEFMYKGEINVEHSSLPSLLKTADDLKIKGLAE 117

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query:     8 CHQFLEALFY--------VIM-DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58
             C  + +ALFY        +IM D ++  L  ++EFMY GE+NV QDQ+   LK A+ LKI
Sbjct:   244 CSPYFQALFYDNPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKI 303

Query:    59 KGLAEAPQSSVKREG 73
             +GLAE   S+ + EG
Sbjct:   304 RGLAEV--SAGRGEG 316

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 34/74 (45%), Positives = 43/74 (58%)

Query:     4 SEQFCHQFLEA----LFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59
             S  F   FLE     L  ++ D  F  L  ++EFMY GEVNV   QL + LKTA+ LK+K
Sbjct:    54 SSYFQSLFLEHPEGHLIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVK 113

Query:    60 GLAEAP-QSSVKRE 72
             GLAE   Q++  RE
Sbjct:   114 GLAEMTNQNTTLRE 127

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0002781 mod(mdg4) "modifier of mdg4" [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:    27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE---APQ 66
             L D+++FMY GEVNV QD LP+F+ TA+ L+IKGL +   APQ
Sbjct:    82 LKDLIQFMYCGEVNVKQDALPAFISTAESLQIKGLTDNDPAPQ 124

GO:0005515 "protein binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=IMP

GO:0000785 "chromatin" evidence=IMP

GO:0001672 "regulation of chromatin assembly or disassembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0008354 "germ cell migration" evidence=IGI;IMP

GO:0008195 "phosphatidate phosphatase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006997 "nucleus organization" evidence=TAS

GO:0006325 "chromatin organization" evidence=NAS

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0007060 "male meiosis chromosome segregation" evidence=IMP

GO:0007141 "male meiosis I" evidence=IMP

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query:    18 VIM-DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
             VIM D  +  L  I+EFMY GE+NVSQDQ+   L+ A+ LK++GLA+
Sbjct:   166 VIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLAD 212

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/47 (44%), Positives = 36/47 (76%)

Query:    17 YVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
             +++ D  ++ L  ++++MY GEVN+SQDQL + LK A+ L+IKGL++
Sbjct:    71 FILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query:    18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
             ++ D     + ++L FMY GEVNVS +QLP FLKTA  L+I+GLA+
Sbjct:   143 ILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLAD 188

GO:0016203 "muscle attachment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0016198 "axon choice point recognition" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query:     9 HQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
             +Q    + Y + D  +  +  +L+FMY GEVNV Q  LP FLKTA+ L+++GL +
Sbjct:   163 NQHPHPIIY-LKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7KRI2	LOLAL_DROME	No assigned EC number	0.7321	0.7534	0.4330	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	3e-07
pfam00651	101	pfam00651, BTB, BTB/POZ domain	1e-05

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 43.1 bits (102), Expect = 3e-07
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query: 17 YVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
            + D + +    +L F+Y G++++ ++ +   L+ AD L+I GL E 
Sbjct: 41 IYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQIPGLVEL 88

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
             +LEF+Y G++ ++++ +   L  AD+L+I  L + 
Sbjct: 58 FEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDK 95

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
PHA02790	480	Kelch-like protein; Provisional	99.83
KOG4441|consensus	571		99.76
PHA02713	557	hypothetical protein; Provisional	99.72
PHA03098	534	kelch-like protein; Provisional	99.63
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.53
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.49
KOG4350|consensus	620		98.62
KOG2075|consensus	521		98.12
KOG4682|consensus	488		98.0
KOG4591|consensus	280		97.44
KOG0783|consensus	1267		97.32
KOG2716|consensus	230		96.83
KOG0783|consensus	1267		96.76
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	96.51
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	96.21
KOG1665|consensus	302		95.77
KOG1724|consensus	162		95.51
KOG3473|consensus	112		93.5
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	92.52
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	91.58
KOG2838|consensus	401		91.12
KOG0511|consensus	516		90.11
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	85.35
KOG2714|consensus	465		84.37
KOG3840|consensus	438		82.96

>PHA02790 Kelch-like protein; Provisional

Probab=99.83  E-value=1.6e-21  Score=142.66  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             EEEeeCCHHHHHhhh----------hc--CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY----------VI--MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~----------~l--~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||||||||+||+          .+  .|+++++|+.||+|+|||++.|+.+|++++++||++||++.+.+.|++..
T Consensus        38 ~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL  116 (480)
T PHA02790         38 TILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFI  116 (480)
T ss_pred             hhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHH
Confidence            589999999999998          23  38999999999999999999999999999999999999999999998863

>KOG4441|consensus

Probab=99.76  E-value=1.3e-19  Score=135.83  Aligned_cols=66  Identities=21%  Similarity=0.396  Sum_probs=63.5

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +||||||||||+||+           .++++++.+++.+++|+|||++.|+.+|+++++++|.+|||+++.+.|.+.
T Consensus        53 ~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~f  129 (571)
T KOG4441|consen   53 VVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEF  129 (571)
T ss_pred             HHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHH
Confidence            489999999999999           789999999999999999999999999999999999999999999999876

>PHA02713 hypothetical protein; Provisional

Probab=99.72  E-value=5.9e-19  Score=131.52  Aligned_cols=65  Identities=20%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             EEEeeCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||||||||+||+            .|+++++++++.||+|+|||+  |+++|++++|.+|++||++.+++.|++..
T Consensus        43 ~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l  119 (557)
T PHA02713         43 TILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYI  119 (557)
T ss_pred             HHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            479999999999998            478999999999999999998  78999999999999999999999998874

>PHA03098 kelch-like protein; Provisional

Probab=99.63  E-value=6.2e-17  Score=118.50  Aligned_cols=66  Identities=14%  Similarity=0.350  Sum_probs=62.1

Q ss_pred             EEEeeCCHHHHHhhh--------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY--------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~--------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||+|||||+||.        .+++ ++++++.+|+|+|||++.++.+++.+++.+|++||++.+++.|++..
T Consensus        28 ~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l  101 (534)
T PHA03098         28 IILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYI  101 (534)
T ss_pred             HHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            479999999999998        5778 99999999999999999999999999999999999999999998863

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.53  E-value=2.7e-15  Score=89.30  Aligned_cols=67  Identities=24%  Similarity=0.441  Sum_probs=62.5

Q ss_pred             EEeeCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeec-CCcHHHHHHHHhhcCccccccccccccc
Q psy14279          4 SEQFCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVS-QDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         4 VLAa~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~-~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +|+++||||+.||.            .++++++++++.+++|+|+|++.++ .+++.+++.+|+.|+++.+.+.|++...
T Consensus        29 iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~  108 (111)
T PF00651_consen   29 ILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQ  108 (111)
T ss_dssp             HHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             hhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            68999999999998            4688999999999999999999999 9999999999999999999999987644

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.49  E-value=1.5e-14  Score=81.46  Aligned_cols=63  Identities=29%  Similarity=0.572  Sum_probs=59.3

Q ss_pred             EEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccc
Q psy14279          4 SEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQ   66 (73)
Q Consensus         4 VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~   66 (73)
                      +|++.|+||+.||.           .++++++..++.+++|+|+|++.++.+++.+++.+|.+++++++.+.|+
T Consensus        17 iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       17 VLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             HHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence            68899999999998           4788999999999999999999999999999999999999999998885

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4350|consensus

Probab=98.62  E-value=9.1e-09  Score=76.27  Aligned_cols=66  Identities=20%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecC---CcHHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQ---DQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~---~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      ++|||.|.|||+|+-           .|++-..++++.+|.|||||++.++.   +-+.++|..|.++++..+..+-.++
T Consensus        61 vILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeY  140 (620)
T KOG4350|consen   61 VILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEY  140 (620)
T ss_pred             hhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            589999999999986           56777899999999999999997754   5578889999999988887765554

>KOG2075|consensus

Probab=98.12  E-value=1.2e-06  Score=65.61  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS   67 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~   67 (73)
                      .|||.+|..|.+||.           .++++.|+++..+|.|+|+-++.+..+++-.++.+|+.+-++.+.+.|=+
T Consensus       136 ~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVk  211 (521)
T KOG2075|consen  136 LVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVK  211 (521)
T ss_pred             hhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            378999999999998           68999999999999999999999999999999999999999999887754

>KOG4682|consensus

Probab=98.00  E-value=3.2e-06  Score=62.54  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             CCHHHHHhhh---------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279          8 CHQFLEALFY---------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         8 ~S~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      -|+||++||.               .-+.|+.+++...+.=+|..++.|..+.+..++.+|..||++++.+-|.++
T Consensus        90 QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~ev  165 (488)
T KOG4682|consen   90 QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEV  165 (488)
T ss_pred             ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3899999998               235799999999999999999999999999999999999999999999876

>KOG4591|consensus

Probab=97.44  E-value=2.8e-05  Score=53.58  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=55.0

Q ss_pred             EEEeeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcceEeecCCc--HHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGEVNVSQDQ--LPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~--v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      .||||.|++.+  |.          .+.+.+++++...+.|+||.++....+.  +.++.++|+.+|+.-+.+.|+..
T Consensus        86 fVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~  161 (280)
T KOG4591|consen   86 FVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKG  161 (280)
T ss_pred             hhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999875  44          5678999999999999999999887766  67899999999999999998764

>KOG0783|consensus

Probab=97.32  E-value=7.8e-05  Score=59.48  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=54.6

Q ss_pred             EEEeeCCHHHHHhhh---------hcCC--CCHHHHHHHhHhhh-cceEee-----cCCcHHHHHHHHhhcCcccccccc
Q psy14279          3 SSEQFCHQFLEALFY---------VIMD--KTFKHLTDILEFMY-AGEVNV-----SQDQLPSFLKTADRLKIKGLAEAP   65 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~---------~l~~--v~~~~l~~ll~f~Y-tG~i~i-----~~~~v~~ll~aA~~Lqi~~l~~~~   65 (73)
                      ++|+|.++||..||.         ...+  ++.+.|+.+|||.| +-+..+     ..+-+-+++..|+.|-|..+++.|
T Consensus       728 c~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ic  807 (1267)
T KOG0783|consen  728 CFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSIC  807 (1267)
T ss_pred             eEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            689999999999998         3333  55999999999999 445433     335578899999999999999999


Q ss_pred             cccc
Q psy14279         66 QSSV   69 (73)
Q Consensus        66 ~~~~   69 (73)
                      |...
T Consensus       808 e~~l  811 (1267)
T KOG0783|consen  808 EQSL  811 (1267)
T ss_pred             HHHH
Confidence            8763

>KOG2716|consensus

Probab=96.83  E-value=0.00073  Score=46.63  Aligned_cols=61  Identities=30%  Similarity=0.573  Sum_probs=51.6

Q ss_pred             CCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCC--cHHHHHHHHhhcCccccccccccc
Q psy14279          8 CHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQD--QLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         8 ~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~--~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      -..||++|+.            -+-|=+|..+..||+||=.|.+.++++  ++.+++.=|.++.+.+|++.|+..
T Consensus        26 ~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~  100 (230)
T KOG2716|consen   26 FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSA  100 (230)
T ss_pred             hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3568999998            123458999999999999999988665  477999999999999999999985

>KOG0783|consensus

Probab=96.76  E-value=0.0025  Score=51.28  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             EEEeeCCHHHHHhhh-----------------------hcCCCCHHHHHHHhHhhhcceEe--------------ecCCc
Q psy14279          3 SSEQFCHQFLEALFY-----------------------VIMDKTFKHLTDILEFMYAGEVN--------------VSQDQ   45 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------------------~l~~v~~~~l~~ll~f~YtG~i~--------------i~~~~   45 (73)
                      .||++.|++||.+|.                       ...+++|..++.||+|+||...-              +-++|
T Consensus       575 fIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N  654 (1267)
T KOG0783|consen  575 FILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKEN  654 (1267)
T ss_pred             EEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccC
Confidence            489999999999997                       25789999999999999998432              23345


Q ss_pred             HHH-------HHHHHhhcCccccccccccc
Q psy14279         46 LPS-------FLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        46 v~~-------ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      ..+       +...+..+++..+...-+++
T Consensus       655 ~~qrtrtCeMl~~~lekf~l~el~~~~~s~  684 (1267)
T KOG0783|consen  655 LSQRTRTCEMLANLLEKFHLAELLPFSVSR  684 (1267)
T ss_pred             hhhcccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence            555       66677777776666555444

>smart00512 Skp1 Found in Skp1 protein family

Probab=96.51  E-value=0.0026  Score=38.15  Aligned_cols=52  Identities=19%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             eCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEe-------------------ecCCcHHHHHHHHhh
Q psy14279          7 FCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVN-------------------VSQDQLPSFLKTADR   55 (73)
Q Consensus         7 a~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~-------------------i~~~~v~~ll~aA~~   55 (73)
                      ..|.-+|.|+.            .+++|+..+|+.+++|++-.+-.                   ++.+.+.+++.||++
T Consensus        22 ~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAny  101 (104)
T smart00512       22 RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANY  101 (104)
T ss_pred             HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35777788776            47789999999999999855321                   445578899999999


Q ss_pred             cCc
Q psy14279         56 LKI   58 (73)
Q Consensus        56 Lqi   58 (73)
                      |+|
T Consensus       102 L~I  104 (104)
T smart00512      102 LDI  104 (104)
T ss_pred             hCC
Confidence            986

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.21  E-value=0.0053  Score=35.79  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHhHhhhc-ceEeec-CCcHHHHHHHHhhcCcccc-cccc
Q psy14279         21 DKTFKHLTDILEFMYA-GEVNVS-QDQLPSFLKTADRLKIKGL-AEAP   65 (73)
Q Consensus        21 ~v~~~~l~~ll~f~Yt-G~i~i~-~~~v~~ll~aA~~Lqi~~l-~~~~   65 (73)
                      +-+|..++.||+|+-+ |++..+ ...+..+++-|++++|.++ ++.|
T Consensus        47 DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   47 DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred             ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence            5689999999999999 788775 6778999999999999988 7766

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG1665|consensus

Probab=95.77  E-value=0.0095  Score=41.80  Aligned_cols=54  Identities=24%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             hcCCCCHHHHHHHhHhhhcceEe-ecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279         18 VIMDKTFKHLTDILEFMYAGEVN-VSQDQLPSFLKTADRLKIKGLAEAPQSSVKR   71 (73)
Q Consensus        18 ~l~~v~~~~l~~ll~f~YtG~i~-i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~   71 (73)
                      .+-+-+|.-|+.||+|.-.|++. .+.-++..+++.|.++||-++++..+.++++
T Consensus        55 ~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~~~~e  109 (302)
T KOG1665|consen   55 VLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLEDSRKE  109 (302)
T ss_pred             EEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhhhccC
Confidence            56677899999999999999995 4567899999999999999999877776554

>KOG1724|consensus

Probab=95.51  E-value=0.0056  Score=40.21  Aligned_cols=51  Identities=25%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             hcCCCCHHHHHHHhHhhhcceE-------------------------eecCCcHHHHHHHHhhcCccccccccccc
Q psy14279         18 VIMDKTFKHLTDILEFMYAGEV-------------------------NVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        18 ~l~~v~~~~l~~ll~f~YtG~i-------------------------~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      .+++|++.+|+.+|+|++-.+-                         .+..+.+.+++.||++|.|++|.+.|+..
T Consensus        47 Pl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~  122 (162)
T KOG1724|consen   47 PLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKT  122 (162)
T ss_pred             ccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            4678999999999999998652                         23445789999999999999999987765

>KOG3473|consensus

Probab=93.50  E-value=0.077  Score=32.74  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=43.5

Q ss_pred             eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhh-----hcce------EeecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFM-----YAGE------VNVSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~-----YtG~------i~i~~~~v~~ll~aA~~Lqi   58 (73)
                      |.-|+=.|+||.             .++++++..++.+.+|.     |++.      ..|+++-..++|.+|++|.+
T Consensus        36 AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   36 AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC  112 (112)
T ss_pred             hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence            456888899998             67899999999999886     7776      35667778999999999863

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=92.52  E-value=0.039  Score=39.82  Aligned_cols=59  Identities=8%  Similarity=0.155  Sum_probs=49.9

Q ss_pred             HHHHHhhh-------hcC------CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279         10 QFLEALFY-------VIM------DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        10 ~YFr~lf~-------~l~------~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      .||+..+.       ..+      ..+..+|+=|++|+......++++|+-.++-.+++||+++|++.|=.+
T Consensus        28 ~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y   99 (317)
T PF11822_consen   28 RYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQY   99 (317)
T ss_pred             HHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHH
Confidence            69998883       112      246789999999999999999999999999999999999999877544

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=91.58  E-value=0.25  Score=27.02  Aligned_cols=31  Identities=6%  Similarity=0.116  Sum_probs=25.5

Q ss_pred             eeCCHHHHHhhh---------hcCCCCHHHHHHHhHhhhc
Q psy14279          6 QFCHQFLEALFY---------VIMDKTFKHLTDILEFMYA   36 (73)
Q Consensus         6 Aa~S~YFr~lf~---------~l~~v~~~~l~~ll~f~Yt   36 (73)
                      |-.|+.++.|+.         .++++++.+++.+++|++-
T Consensus        20 a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen   20 AKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             HTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence            447899999987         5789999999999999874

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG2838|consensus

Probab=91.12  E-value=0.045  Score=39.53  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             EEEeeCCHHHHHhhh-------hc--------------CCCCHHHH-HHHhHhhhcceEeecCC----------------
Q psy14279          3 SSEQFCHQFLEALFY-------VI--------------MDKTFKHL-TDILEFMYAGEVNVSQD----------------   44 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------~l--------------~~v~~~~l-~~ll~f~YtG~i~i~~~----------------   44 (73)
                      +|-||.|++||.++.       +.              .-|=|..+ ..++.|+||..+.++--                
T Consensus       268 ai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAi  347 (401)
T KOG2838|consen  268 AIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAI  347 (401)
T ss_pred             HHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHH
Confidence            356889999999987       11              11223333 45789999998864321                


Q ss_pred             ------------cHHHHHHHHhhcCcccccccccccc
Q psy14279         45 ------------QLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus        45 ------------~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                                  ...++++.|.+|.+.-+.++|+.++
T Consensus       348 tnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vi  384 (401)
T KOG2838|consen  348 TNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVI  384 (401)
T ss_pred             HcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1345777788888888888887764

>KOG0511|consensus

Probab=90.11  E-value=0.28  Score=36.88  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=43.0

Q ss_pred             HHHHHhhh---------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279         10 QFLEALFY---------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK   59 (73)
Q Consensus        10 ~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~   59 (73)
                      .||+.||.               .++.......+.++.|.|+.+..+.++-..+++-.|+.+.+.
T Consensus       314 eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~  378 (516)
T KOG0511|consen  314 EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA  378 (516)
T ss_pred             HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence            79999998               345567789999999999999999999999988888888654

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=85.35  E-value=0.11  Score=29.82  Aligned_cols=28  Identities=36%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             ecCCcHHHHHHHHhhcCccccccccccc
Q psy14279         41 VSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        41 i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      ++.+.+.+++.||++|+|++|.+.|...
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~   38 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKY   38 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence            3566789999999999999999887644

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG2714|consensus

Probab=84.37  E-value=1.1  Score=33.80  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=45.8

Q ss_pred             CHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHH-HHhhcCcccccc
Q psy14279          9 HQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLK-TADRLKIKGLAE   63 (73)
Q Consensus         9 S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~-aA~~Lqi~~l~~   63 (73)
                      =.+|.+|+.            .+-+=+|+.|.-||+|.=||++.++.-....++. -|.++++.++..
T Consensus        35 DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   35 DSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             chHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence            358888885            2235589999999999999999998777777777 899999998876

>KOG3840|consensus

Probab=82.96  E-value=1.5  Score=32.30  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             hcCCCCHHHHHHHhHhhhcceEeecC-CcHHHHHHHHhhcCcc
Q psy14279         18 VIMDKTFKHLTDILEFMYAGEVNVSQ-DQLPSFLKTADRLKIK   59 (73)
Q Consensus        18 ~l~~v~~~~l~~ll~f~YtG~i~i~~-~~v~~ll~aA~~Lqi~   59 (73)
                      .-.||+...|+.||||.-||.++-+. -.+.++-+|+++|-|+
T Consensus       143 VAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip  185 (438)
T KOG3840|consen  143 VADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP  185 (438)
T ss_pred             hhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence            44789999999999999999997755 4699999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	5e-05
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	5e-04
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	5e-04

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 37.2 bits (87), Expect = 5e-05
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 3   SSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 62
            S+Q   +   AL   I   TF  L   L F+Y   V +   +L    + A  L ++ L 
Sbjct: 52  VSQQLGRRGQWALGEGISPSTFAQL---LNFVYGESVELQPGELRPLQEAARALGVQSLE 108

Query: 63  EA 64
           EA
Sbjct: 109 EA 110

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 10/59 (16%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 7   FCHQFLEALFYVIMDK-TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
              Q    L   + ++ T +    +L+F Y  ++ +S++ +   ++ A+ L++  L ++
Sbjct: 62  LVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 7   FCHQFLEALFYVIMDK--TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
           F  Q    L  + +D     +    +L+FMY   +N+ +  + + + TA  L+++ + + 
Sbjct: 59  FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.78
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.78
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.77
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.77
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.77
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.75
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.75
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.75
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.75
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.75
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.75
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.74
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.74
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.74
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.69
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.67
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.66
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.64
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.63
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.53
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.3
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.18
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.01
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.98
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.28
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.08
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.98
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.61
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.23
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	95.72
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	95.65
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	94.69
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	94.63
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	94.42
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	92.85
2rbg_A	126	Putative uncharacterized protein ST0493; hypotheti	83.14

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.78  E-value=9.6e-20  Score=111.22  Aligned_cols=68  Identities=16%  Similarity=0.331  Sum_probs=63.0

Q ss_pred             EEEeeCCHHHHHhhh---------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY---------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~---------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +||||+||||++||.         .+ .++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..+
T Consensus        46 ~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           46 SVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            479999999999998         46 589999999999999999999999999999999999999999999998653

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.78  E-value=1.1e-19  Score=110.64  Aligned_cols=66  Identities=15%  Similarity=0.333  Sum_probs=62.2

Q ss_pred             EEEeeCCHHHHHhhh---------hcCC-CCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY---------VIMD-KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~---------~l~~-v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +|||++|+|||+||.         .+++ +++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus        49 ~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~  124 (125)
T 3ohu_A           49 AVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF  124 (125)
T ss_dssp             HHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred             HHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            478999999999997         5677 99999999999999999999999999999999999999999999874

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.77  E-value=2.2e-20  Score=113.40  Aligned_cols=68  Identities=22%  Similarity=0.338  Sum_probs=63.6

Q ss_pred             EEEeeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +||||+||||++||.       .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus        41 ~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (119)
T 3b84_A           41 SVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKP  115 (119)
T ss_dssp             HHHHHHCHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred             HHHhhcCHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            478999999999997       68899999999999999999999999999999999999999999999998743

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.77  E-value=1.3e-19  Score=111.19  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             EEEeeCCHHHHHhhh-------hcC-CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------VIM-DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------~l~-~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +|||++|+||++||.       .++ ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus        50 ~vLaa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~  125 (129)
T 3ga1_A           50 AVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFL  125 (129)
T ss_dssp             HHHHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC------
T ss_pred             HHHHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            479999999999998       676 99999999999999999999999999999999999999999999998744

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.77  E-value=3.7e-20  Score=112.40  Aligned_cols=67  Identities=21%  Similarity=0.376  Sum_probs=63.2

Q ss_pred             EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +|||++||||++||.      .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|++..
T Consensus        44 ~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l  116 (119)
T 2q81_A           44 AVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALK  116 (119)
T ss_dssp             HHHHHHCHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            478999999999998      6789999999999999999999999999999999999999999999998753

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.75  E-value=5.1e-20  Score=114.13  Aligned_cols=67  Identities=21%  Similarity=0.337  Sum_probs=63.5

Q ss_pred             EEEeeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||+|+||++||.       .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++..
T Consensus        42 ~vLaa~S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l  115 (135)
T 2yy9_A           42 SVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQ  115 (135)
T ss_dssp             HHHHHHCHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHhCHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            479999999999997       6889999999999999999999999999999999999999999999998874

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.75  E-value=8.7e-20  Score=111.35  Aligned_cols=69  Identities=16%  Similarity=0.326  Sum_probs=64.5

Q ss_pred             EEEeeCCHHHHHhhh----------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY----------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR   71 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~----------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~   71 (73)
                      +|||++||||++||.          .+ +++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...+
T Consensus        46 ~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           46 TVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             HHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            478999999999997          57 8999999999999999999999999999999999999999999999987544

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.75  E-value=1.3e-19  Score=109.10  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             EEEeeCCHHHHHhhh-------hcC--CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------VIM--DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------~l~--~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      .|||++||||++||.       .++  ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus        39 ~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l  114 (116)
T 2vpk_A           39 NVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKM  114 (116)
T ss_dssp             HHHHHHCHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            478999999999997       466  9999999999999999999999999999999999999999999998754

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.75  E-value=5.8e-20  Score=111.67  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=63.6

Q ss_pred             EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +|||++||||++||.      .++++++++++.+++|+|||++.++++++.+++.+|++|+++++.+.|++..
T Consensus        45 ~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l  117 (121)
T 1buo_A           45 TVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML  117 (121)
T ss_dssp             HHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            478999999999998      7899999999999999999999999999999999999999999999998764

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.75  E-value=1.7e-19  Score=113.01  Aligned_cols=67  Identities=12%  Similarity=0.299  Sum_probs=62.8

Q ss_pred             EEEeeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||+|||||+||.             .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|++..
T Consensus        64 ~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A           64 NILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             HHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            479999999999996             6789999999999999999999999999999999999999999999998753

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.75  E-value=1.8e-19  Score=111.77  Aligned_cols=68  Identities=16%  Similarity=0.339  Sum_probs=63.1

Q ss_pred             EEEeeCCHHHHHhhh---------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY---------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~---------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +||||+||||++||.         .+ .+++++.++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus        53 ~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  130 (138)
T 2z8h_A           53 SVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLK  130 (138)
T ss_dssp             HHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTT
T ss_pred             HHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            479999999999998         45 489999999999999999999999999999999999999999999988743

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.74  E-value=6.8e-20  Score=112.17  Aligned_cols=69  Identities=17%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             EEEeeCCHHHHHhhh--hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY--VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR   71 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~--~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~   71 (73)
                      +||||+|+||++.=.  .++++++++++.+|+|+|||++.++.+|+.+++.+|++||++++.+.|++..+.
T Consensus        47 ~vLaa~S~yF~~~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           47 LVLAGVSQQLGRRGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHTTCGGGCCCEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHcCHHHhcCCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            479999999986322  789999999999999999999999999999999999999999999999987653

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.74  E-value=1.6e-19  Score=109.12  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=62.3

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +|||++||||++||.           .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus        42 ~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~  118 (120)
T 2if5_A           42 SVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADL  118 (120)
T ss_dssp             HHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            478999999999997           678999999999999999999999999999999999999999999999864

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.74  E-value=2.3e-19  Score=106.51  Aligned_cols=67  Identities=22%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             EEEeeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      .|||++||||++||.          .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus        29 ~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l  105 (109)
T 2vkp_A           29 YVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFL  105 (109)
T ss_dssp             HHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            478999999999997          6789999999999999999999999999999999999999999999998763

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.69  E-value=1.7e-18  Score=105.05  Aligned_cols=61  Identities=20%  Similarity=0.348  Sum_probs=57.6

Q ss_pred             EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceE-eecCCcHHHHHHHHhhcCcccccc
Q psy14279          3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEV-NVSQDQLPSFLKTADRLKIKGLAE   63 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i-~i~~~~v~~ll~aA~~Lqi~~l~~   63 (73)
                      +|||++||||++||.      .++++++++++.+++|+|||++ .++++++.+++.+|++|+++++.+
T Consensus        48 ~vLaa~S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           48 NILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence            478999999999998      7899999999999999999999 799999999999999999998875

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.67  E-value=7.2e-18  Score=103.79  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      .|||++|+||++||.           .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus        42 ~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~  120 (145)
T 4eoz_A           42 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC  120 (145)
T ss_dssp             HHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--
T ss_pred             HHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            478999999999997           67899999999999999999999999999999999999999999999998743

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.66  E-value=9.1e-18  Score=112.23  Aligned_cols=66  Identities=12%  Similarity=0.295  Sum_probs=60.7

Q ss_pred             EEEeeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +|||++||||++||.             .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus        48 ~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~  126 (256)
T 3hve_A           48 NILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEF  126 (256)
T ss_dssp             HHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHH
Confidence            478999999999995             578999999999999999999999999999999999999999999999875

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.64  E-value=1.5e-17  Score=104.81  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      .|||++||||++||.           .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus        51 ~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l  128 (172)
T 3htm_A           51 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL  128 (172)
T ss_dssp             HHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            478999999999997           6789999999999999999999999999999999999999999999998763

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.63  E-value=1.9e-17  Score=112.01  Aligned_cols=66  Identities=21%  Similarity=0.322  Sum_probs=62.1

Q ss_pred             EEEeeCCHHHHHhhh-----------hcC------CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIM------DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAP   65 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~------~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~   65 (73)
                      +|||++||||++||.           .++      ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|
T Consensus        52 ~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c  131 (279)
T 3i3n_A           52 SVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFC  131 (279)
T ss_dssp             HHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHH
Confidence            479999999999997           566      899999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy14279         66 QSS   68 (73)
Q Consensus        66 ~~~   68 (73)
                      ++.
T Consensus       132 ~~~  134 (279)
T 3i3n_A          132 GEF  134 (279)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.53  E-value=4e-16  Score=106.57  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +||||+||||++||.           .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+.+.|++..
T Consensus       191 ~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l  268 (312)
T 3hqi_A          191 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL  268 (312)
T ss_dssp             HHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            479999999999997           6889999999999999999999999999999999999999999999998763

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.18  E-value=1.6e-11  Score=72.65  Aligned_cols=53  Identities=11%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhh-----c---ceEe---ecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMY-----A---GEVN---VSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~Y-----t---G~i~---i~~~~v~~ll~aA~~Lqi   58 (73)
                      |++|+|||+||.             .+++|++.+|+.+++|+|     +   +++.   ++++++.+++.||++|+.
T Consensus        21 A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           21 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred             HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence            789999999996             478999999999999999     5   7887   999999999999999973

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.01  E-value=6.1e-11  Score=74.39  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=58.0

Q ss_pred             eeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcce--------------------------EeecCCcHHHHHHH
Q psy14279          6 QFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGE--------------------------VNVSQDQLPSFLKT   52 (73)
Q Consensus         6 Aa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~--------------------------i~i~~~~v~~ll~a   52 (73)
                      |.+|+|||+||.       .+++|++.+|+.+++|+|.++                          +.++.+++.+++.|
T Consensus        21 A~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~A  100 (141)
T 1fs1_B           21 AKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILA  100 (141)
T ss_dssp             GGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHH
Confidence            789999999995       678999999999999999987                          67888999999999


Q ss_pred             HhhcCccccccccccc
Q psy14279         53 ADRLKIKGLAEAPQSS   68 (73)
Q Consensus        53 A~~Lqi~~l~~~~~~~   68 (73)
                      |++|+|++|.+.|...
T Consensus       101 AnyL~I~~Lldl~c~~  116 (141)
T 1fs1_B          101 ANYLDIKGLLDVTCKT  116 (141)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHH
Confidence            9999999999988764

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.98  E-value=3.2e-11  Score=77.02  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=41.0

Q ss_pred             eeCCHHHHHhhh--------hcCCCCHHHHHHHhHhhhcce---------------------------EeecCCcHHHHH
Q psy14279          6 QFCHQFLEALFY--------VIMDKTFKHLTDILEFMYAGE---------------------------VNVSQDQLPSFL   50 (73)
Q Consensus         6 Aa~S~YFr~lf~--------~l~~v~~~~l~~ll~f~YtG~---------------------------i~i~~~~v~~ll   50 (73)
                      |.+|+|||.||.        .+++|++.+|+.+++|+|.++                           +.++.+++.+++
T Consensus        23 A~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi  102 (160)
T 2p1m_A           23 ALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELI  102 (160)
T ss_dssp             HHTCTTTC------------CCTTSCHHHHHHHHHC------------------------------------------CH
T ss_pred             HHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHH
Confidence            789999999997        678999999999999999997                           578999999999


Q ss_pred             HHHhhcCccccccccccc
Q psy14279         51 KTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        51 ~aA~~Lqi~~l~~~~~~~   68 (73)
                      .||++|+|++|.+.|...
T Consensus       103 ~AAnyL~I~~Lldl~c~~  120 (160)
T 2p1m_A          103 LAANYLNIKNLLDLTCQT  120 (160)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence            999999999999988765

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.28  E-value=7e-07  Score=52.63  Aligned_cols=53  Identities=9%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcce-----------EeecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGE-----------VNVSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~-----------i~i~~~~v~~ll~aA~~Lqi   58 (73)
                      |.+|+++|.|+.             .+++|++.+|+.+++|+|..+           -.++.+.+.+++.||++|+|
T Consensus        20 A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           20 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence            679999999996             578999999999999999875           36888999999999999986

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.08  E-value=1.5e-06  Score=51.49  Aligned_cols=53  Identities=17%  Similarity=0.190  Sum_probs=46.6

Q ss_pred             eeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcce--------------EeecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGE--------------VNVSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~--------------i~i~~~~v~~ll~aA~~Lqi   58 (73)
                      |.+|+++|.|+.          .+++|++.+++.+++|+|..+              -.++.+.+.+++.||++|+|
T Consensus        23 A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           23 AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence            679999999994          678999999999999999876              25677789999999999986

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.98  E-value=1.8e-06  Score=55.46  Aligned_cols=63  Identities=19%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             eeCCHHHHHhhh---------------hcCCCCHHHHHHHhHhhhcce-------------------------EeecCCc
Q psy14279          6 QFCHQFLEALFY---------------VIMDKTFKHLTDILEFMYAGE-------------------------VNVSQDQ   45 (73)
Q Consensus         6 Aa~S~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~-------------------------i~i~~~~   45 (73)
                      |.+|.++|.|+.               .|++|++.+|+.+++|++..+                         +.++.+.
T Consensus        26 A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~  105 (169)
T 3v7d_A           26 AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEM  105 (169)
T ss_dssp             HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHH
T ss_pred             HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHH
Confidence            568999999985               368999999999999998764                         3466677


Q ss_pred             HHHHHHHHhhcCccccccccccc
Q psy14279         46 LPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        46 v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +.+++.||++|+|++|.+.++..
T Consensus       106 LfeLi~AAnyLdIk~Lldl~c~~  128 (169)
T 3v7d_A          106 LYEIILAANYLNIKPLLDAGCKV  128 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHH
Confidence            89999999999999999987654

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.61  E-value=2.1e-05  Score=47.58  Aligned_cols=53  Identities=9%  Similarity=0.107  Sum_probs=45.9

Q ss_pred             eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcce-----------EeecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGE-----------VNVSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~-----------i~i~~~~v~~ll~aA~~Lqi   58 (73)
                      |.+|+.+|.|+.             .|++|+..+|+.+++|++..+           -.++.+.+.+++.||++|+|
T Consensus        36 A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           36 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence            568999999985             567999999999999998765           25777889999999999986

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.23  E-value=0.00012  Score=43.49  Aligned_cols=49  Identities=16%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccccccccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +-+|..++.||+|+.+|++.++.+ ....+++-|.+++|.++++.|++.+
T Consensus        55 DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i  104 (107)
T 3drz_A           55 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI  104 (107)
T ss_dssp             CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            569999999999999999988664 3578999999999999999988754

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=95.72  E-value=0.01  Score=36.26  Aligned_cols=46  Identities=11%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ   66 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~   66 (73)
                      +=+|..|+.||+|+-+|++.++.+ .+..+++-|.+++|.++ .+.|+
T Consensus        58 DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC  105 (124)
T 1s1g_A           58 DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC  105 (124)
T ss_dssp             CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHH
T ss_pred             cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence            458999999999999999988765 48999999999999886 45543

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=95.65  E-value=0.014  Score=36.34  Aligned_cols=46  Identities=11%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ   66 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~   66 (73)
                      |=++..|+.||+|+-+|++.++.+ .+..+++-|++++|..+ .+.|+
T Consensus        80 DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~l~~CC  127 (140)
T 2nz0_B           80 DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC  127 (140)
T ss_dssp             CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGGBCTTT
T ss_pred             eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence            558999999999999999988764 48999999999999886 45543

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=94.69  E-value=0.016  Score=34.20  Aligned_cols=46  Identities=11%  Similarity=0.145  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCccccc-cccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLA-EAPQ   66 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~-~~~~   66 (73)
                      +=+|..++.||+|+-+|++.++++ .+..+++-|.+++|.++. +.|+
T Consensus        45 DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc   92 (105)
T 1nn7_A           45 DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC   92 (105)
T ss_dssp             CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred             eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence            458899999999999999988764 488999999999998863 4443

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=94.63  E-value=0.0065  Score=40.22  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCccccccccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      |-+|..|+.||+|+-+|++.++.+ ....+++-|.+++|.++++.|++-
T Consensus        61 DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~  109 (202)
T 3drx_A           61 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDK  109 (202)
T ss_dssp             CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHH
Confidence            458899999999999999988665 357899999999999999888764

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=94.42  E-value=0.023  Score=34.14  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ   66 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~   66 (73)
                      +-+|..++.||+|+-+|++.++.+ .+..+++-|.+++|.+. .+.|+
T Consensus        51 DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~CC   98 (115)
T 3kvt_A           51 DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC   98 (115)
T ss_dssp             CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGG
T ss_pred             ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHHHHHHH
Confidence            568899999999999999988774 57899999999999774 34443

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=92.85  E-value=0.057  Score=31.69  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHhHhhhc-ceEeecCC-cHHHHHHHHhhcCcccc
Q psy14279         21 DKTFKHLTDILEFMYA-GEVNVSQD-QLPSFLKTADRLKIKGL   61 (73)
Q Consensus        21 ~v~~~~l~~ll~f~Yt-G~i~i~~~-~v~~ll~aA~~Lqi~~l   61 (73)
                      +=+|..++.||+|.-+ |++.++++ .+..+++-|.+++|...
T Consensus        47 DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~   89 (100)
T 1t1d_A           47 DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGEN   89 (100)
T ss_dssp             CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHH
T ss_pred             cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHH
Confidence            5688999999999999 99988654 47889999999999774

>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}

Probab=83.14  E-value=4  Score=24.93  Aligned_cols=61  Identities=21%  Similarity=0.442  Sum_probs=45.4

Q ss_pred             HHHHHhhh-------------hcCCCCHHHH-----HHHhHhhhcc-eEee-cCCcHHHHHHHHhhcCcccccccccccc
Q psy14279         10 QFLEALFY-------------VIMDKTFKHL-----TDILEFMYAG-EVNV-SQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus        10 ~YFr~lf~-------------~l~~v~~~~l-----~~ll~f~YtG-~i~i-~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +|||+||.             .+..++...+     +.+||=+=-| ++.+ .++.|..++.-.....++|+.-.|+.-+
T Consensus        19 n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDdeN   98 (126)
T 2rbg_A           19 NYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDEN   98 (126)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGGG
T ss_pred             HHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCCc
Confidence            79999998             4566665443     4566655445 3322 5688999999999999999999999865


Q ss_pred             c
Q psy14279         70 K   70 (73)
Q Consensus        70 ~   70 (73)
                      |
T Consensus        99 k   99 (126)
T 2rbg_A           99 K   99 (126)
T ss_dssp             H
T ss_pred             h
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	5e-06
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	8e-05

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 1   MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKG 60
             S          +  Y +   + K    ILE+ Y   +    + L   L  A+ L+I+ 
Sbjct: 49  CTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY 108

Query: 61  LAEA 64
           L E 
Sbjct: 109 LEEQ 112

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 8e-05
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 1   MVSSEQFCHQFLEALFYVIMDK--TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58
            +    F  Q    L  + +D     +    +L+FMY   +N+ +  + + + TA  L++
Sbjct: 49  GLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 108

Query: 59  KGLAEA 64
           + + + 
Sbjct: 109 EHVVDT 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.77
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.76
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	96.75
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	95.12
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.21
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	91.69
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	87.69
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	87.48
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	84.72
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	84.01

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.1e-21  Score=115.45  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV   69 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~   69 (73)
                      +|||++||||++||.      .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|.+..
T Consensus        45 ~vLaa~S~~F~~lf~~~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L  117 (121)
T d1buoa_          45 TVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML  117 (121)
T ss_dssp             HHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhcccChhhhhhccCccceeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            479999999999999      7899999999999999999999999999999999999999999999998754

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-20  Score=112.05  Aligned_cols=68  Identities=16%  Similarity=0.321  Sum_probs=62.9

Q ss_pred             EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279          3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK   70 (73)
Q Consensus         3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~   70 (73)
                      +|||++|||||+||.           .+++++++.++.+++|+|||++.++.+++.+++.+|++|+++++.+.|.+..+
T Consensus        42 ~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~  120 (122)
T d1r29a_          42 TVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK  120 (122)
T ss_dssp             HHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            479999999999997           45789999999999999999999999999999999999999999999987543

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00017  Score=40.90  Aligned_cols=52  Identities=12%  Similarity=0.179  Sum_probs=40.1

Q ss_pred             eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhh-----cc------eEeecCCcHHHHHHHHhhcC
Q psy14279          6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMY-----AG------EVNVSQDQLPSFLKTADRLK   57 (73)
Q Consensus         6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~Y-----tG------~i~i~~~~v~~ll~aA~~Lq   57 (73)
                      |-+|+.+|.|+.             .+++|++.+|+.+++|++     ++      +..++.+.+.+++.||++|+
T Consensus        20 A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          20 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   95 (96)
T ss_dssp             HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence            457999999985             678999999999999995     22      22356667889999999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00055  Score=38.76  Aligned_cols=53  Identities=19%  Similarity=0.230  Sum_probs=42.5

Q ss_pred             eeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcc--------------eEeecCCcHHHHHHHHhhcCc
Q psy14279          6 QFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAG--------------EVNVSQDQLPSFLKTADRLKI   58 (73)
Q Consensus         6 Aa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG--------------~i~i~~~~v~~ll~aA~~Lqi   58 (73)
                      |-.|+.+|.|+.          .+++|++.+|+.+++|++-.              +..+..+.+-+++.||++|+|
T Consensus        23 A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          23 AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            457999999987          68899999999999999621              234455568899999999986

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=95.12  E-value=0.0065  Score=34.42  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcc-cccccccc
Q psy14279         21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIK-GLAEAPQS   67 (73)
Q Consensus        21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~-~l~~~~~~   67 (73)
                      +=+|..++.||+|+-+|++.++.+ .+..+++-|.+++|+ .+.+.|+-
T Consensus        48 DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~yygi~~~~l~~Cc~   96 (103)
T d3kvta_          48 DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCW   96 (103)
T ss_dssp             CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGGS
T ss_pred             cCCHHHHHHHHHHHccCCcccccccCHHHHHHHHHHcCCCHHHHHHHhH
Confidence            568999999999999999998765 477788999999996 46777754

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.011  Score=33.48  Aligned_cols=42  Identities=12%  Similarity=0.263  Sum_probs=35.7

Q ss_pred             CCCCHHHHHHHhHhhhcceEeecCCc-HHHHHHHHhhcCcccc
Q psy14279         20 MDKTFKHLTDILEFMYAGEVNVSQDQ-LPSFLKTADRLKIKGL   61 (73)
Q Consensus        20 ~~v~~~~l~~ll~f~YtG~i~i~~~~-v~~ll~aA~~Lqi~~l   61 (73)
                      -+=+|..++.||+|+-+|++.++++. ...+++-|.+++|...
T Consensus        44 iDRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~fygi~~~   86 (105)
T d1nn7a_          44 FDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPE   86 (105)
T ss_dssp             ECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSC
T ss_pred             EeCCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHHcCCCHH
Confidence            35689999999999999999877654 7788999999999764

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.095  Score=26.81  Aligned_cols=31  Identities=3%  Similarity=0.043  Sum_probs=26.7

Q ss_pred             eeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhc
Q psy14279          6 QFCHQFLEALFY-------VIMDKTFKHLTDILEFMYA   36 (73)
Q Consensus         6 Aa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~Yt   36 (73)
                      |..|.-.+.|+.       .+++|+..+|+.+++|++-
T Consensus        20 a~~S~tI~~ml~~~~~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2          20 AKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             GGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhcCCCCCcccCCcCHHHHHHHHHHHHH
Confidence            457888888887       6889999999999999874

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=87.69  E-value=0.13  Score=28.67  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHhHhhhc-ceEeecCCc-HHHHHHHHhhcCcccc
Q psy14279         21 DKTFKHLTDILEFMYA-GEVNVSQDQ-LPSFLKTADRLKIKGL   61 (73)
Q Consensus        21 ~v~~~~l~~ll~f~Yt-G~i~i~~~~-v~~ll~aA~~Lqi~~l   61 (73)
                      +=+|..++.||+|+-+ |.+..+.+. ...+++-|.+++|...
T Consensus        47 DRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea~y~gi~~~   89 (100)
T d1t1da_          47 DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGEN   89 (100)
T ss_dssp             CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHH
T ss_pred             ecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHHHHcCCCHH
Confidence            5589999999999988 566655443 7889999999999763

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.2  Score=26.16  Aligned_cols=31  Identities=10%  Similarity=0.081  Sum_probs=25.2

Q ss_pred             eeCCHHHHHhhh---------------hcCCCCHHHHHHHhHhhhc
Q psy14279          6 QFCHQFLEALFY---------------VIMDKTFKHLTDILEFMYA   36 (73)
Q Consensus         6 Aa~S~YFr~lf~---------------~l~~v~~~~l~~ll~f~Yt   36 (73)
                      |-+|.-.|.|+.               .+++|+..+|+.+++|++-
T Consensus        20 a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2          20 AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             HTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHH
Confidence            447888888874               5789999999999999864

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.037  Score=28.16  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             eecCCcHHHHHHHHhhcCccccccccccc
Q psy14279         40 NVSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        40 ~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      .+..+.+-+++.||++|+|++|.+.+...
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~   37 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKT   37 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            35566788999999999999999877643

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.01  E-value=0.032  Score=29.68  Aligned_cols=28  Identities=32%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             ecCCcHHHHHHHHhhcCccccccccccc
Q psy14279         41 VSQDQLPSFLKTADRLKIKGLAEAPQSS   68 (73)
Q Consensus        41 i~~~~v~~ll~aA~~Lqi~~l~~~~~~~   68 (73)
                      +..+.+-+++.||++|+|++|.+.+...
T Consensus        11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~   38 (70)
T d1nexa1          11 VDQEMLYEIILAANYLNIKPLLDAGCKV   38 (70)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            5667789999999999999999877654