Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 2 ALYPPGTSNLPTLI-YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPAIMEEEL 60
A+Y G + T YEL L ASD+L EN TTV+IH+ DVND PPVF Y + EE
Sbjct: 1468 AIYVAGALDYETRRRYELRLAASDNLKENYTTVIIHVKDVNDNPPVFERPTYRTQITEED 1527
Query: 61 PGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
P +L+V ATDGDKDR NIVYFLTGQGID DNP NSKFDINRTTGEIF
Sbjct: 1528 DRNLPKRVLQVTATDGDKDRPQNIVYFLTGQGIDPDNPANSKFDINRTTGEIF 1580
Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. May associate with arm neural isoform and participate in the transmission of developmental information. Drosophila melanogaster (taxid: 7227)
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVLAT 74
Y L L+ASD + T V IHI DVND P F Y ++EE++ P L V AT
Sbjct: 1405 YHLVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDV--DIPKVLFNVHAT 1462
Query: 75 DGDKD-RQNNIVYFLTGQGID 94
D D+D + + IVY L GQG D
Sbjct: 1463 DADQDEKSSRIVYRLEGQGAD 1483
Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. Isoform A is required for cell migration during body enclosure and cell shape changes during body elongation. Required for proper localization of other junctional components, such as hmp-1, hmp-2 and jac-1. Isoform b is involved in axonal guidance in a subset of motor neurons.
Caenorhabditis elegans (taxid: 6239)
>sp|Q96JP9|CDHR1_HUMAN Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2
Score = 148 (57.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/81 (44%), Positives = 46/81 (56%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLAT 74
Y L L+ASD + T V IHI DVND P F Y ++EE++ P L V AT
Sbjct: 1405 YHLVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVD--IPKVLFNVHAT 1462
Query: 75 DGDKDRQNN-IVYFLTGQGID 94
D D+D +++ IVY L GQG D
Sbjct: 1463 DADQDEKSSRIVYRLEGQGAD 1483
Score = 148 (57.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/81 (44%), Positives = 46/81 (56%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLAT 74
Y L L+ASD + T V IHI DVND P F Y ++EE++ P L V AT
Sbjct: 1405 YHLVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVD--IPKVLFNVHAT 1462
Query: 75 DGDKDRQNN-IVYFLTGQGID 94
D D+D +++ IVY L GQG D
Sbjct: 1463 DADQDEKSSRIVYRLEGQGAD 1483
Score = 42.3 bits (100), Expect = 3e-06
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 55 IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+ E PG +L V ATD D + Y + + F I+ +TGEI
Sbjct: 6 VPENAPPG---TVVLTVSATDPDSGENGEVTYSIVS------GNEDGLFSIDPSTGEIT 55
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98
Score = 35.4 bits (82), Expect = 9e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 16 YELTLVASDSLNENK---TTVVIHINDVNDMPP 45
Y LT+ A+D TV I + DVND P
Sbjct: 49 YTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81
Score = 35.0 bits (81), Expect = 0.002
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 55 IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+ E G + V ATD D I Y + G G F I+ TG++
Sbjct: 5 VPENAPVGTEVLT---VTATDADLGPNGRIFYSILGGGPG------GWFRIDPDTGDLS 54
Calx-beta: Calx-beta domain; InterPro: IPR003644 T
80.67
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion
They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells
This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880
Score = 68.1 bits (167), Expect = 1e-15
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L A S E+ +VI + D ND P F ++ + E +PG S++KV
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKV 130
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVIS 173
Score = 67.0 bits (164), Expect = 5e-15
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
+ L A D EN +VI++ D+ND P F ++ + E PG ++ V
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG---TYVMTV 130
Query: 72 LATDGDKDRQNN--IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
A D D N + Y + Q P + F IN TG+I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQ--APSTPSPNMFTINNETGDI 171
Score = 65.7 bits (160), Expect = 6e-14
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L+ A E + I++ D ND P F ++ + E PG ++ V
Sbjct: 229 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPG---TQVMAV 285
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + + + Y + Q D + P + F INR TG I
Sbjct: 286 SATDEDDNIDSLNGVLSYSILKQ--DPEEPIPNLFTINRETGVI 327
Score = 65.4 bits (160), Expect = 7e-14
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L A S E+ +VI + D ND P F ++ + E +PG S++KV
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKV 130
Query: 72 LATDGD--KDRQN-NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + N I Y + Q D + P + F +NR TG I
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 65.1 bits (159), Expect = 1e-13
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
+ L A D EN +VI++ D+ND P F ++ + E PG ++ V
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG---TYVMTV 130
Query: 72 LATDGDKDRQNN--IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
A D D N + Y + Q P + F IN TG+I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQ--APSTPSPNMFTINNETGDI 171
Score = 63.1 bits (154), Expect = 1e-13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDS----LNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y L A D E + ++ + D+ND PP F +Y A + E G S+++
Sbjct: 72 YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG---TSVIQ 128
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V A+D D N +VY + G F + TG I
Sbjct: 129 VTASDADDPTYGNSAKLVYSIL--------EGQPYFSVEAQTGII 165
Score = 63.5 bits (155), Expect = 3e-13
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L+ A E + I++ D ND P F ++ + E PG ++ V
Sbjct: 80 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPG---TQVMAV 136
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + + + Y + Q D + P + F INR TG I
Sbjct: 137 SATDEDDNIDSLNGVLSYSILKQ--DPEEPIPNLFTINRETGVI 178
Score = 61.9 bits (151), Expect = 3e-13
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y L A + E ++ +I I+D+ND P+F +Y A + E G +++
Sbjct: 71 YILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG---TFVVQ 127
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V ATD D N +VY + G F + TG I
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQ--------GQPYFSVESETGII 164
Score = 61.8 bits (151), Expect = 4e-13
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLAT 74
+ + SD V I + DVND P F+ Y I E G + V AT
Sbjct: 78 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG---TPIFIVNAT 134
Query: 75 DGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
D D +++Y P + F I+ G +
Sbjct: 135 DPDLGAGGSVLYSFQ--------PPSPFFAIDSARGIVT 165
Score = 61.2 bits (149), Expect = 7e-13
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
YELT D N E + +I ++D+ND P+F ++ + E G S+ K
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG---TSVTK 125
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V A D D + Y + GN F ++ +
Sbjct: 126 VTAEDADDPTVAGHATVTYQIIK--------GNEYFTVDDSGVIF 162
Score = 60.9 bits (148), Expect = 2e-12
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 16 YELTLVASDS-----LNENKTTVVIHIN-DVNDMPPVFNTSLYPA-IMEEELPGPYPHSL 68
Y L + A D ++T ++ P F Y A I E + +
Sbjct: 177 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD---SDI 233
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+ + A I Y L QG G F+I T+G +
Sbjct: 234 ISIKAKSFADRE---IRYTLKAQG-----QGAGTFNIGPTSGIVK 270
Score = 58.5 bits (142), Expect = 2e-11
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 15 IYELTLVASD---SLNENKTTVVIHINDVNDMPPVFNTSLYPA--IMEEELPGPYPHSLL 69
+Y L + A++ + + I + DVND P F Y A + E+ G S+L
Sbjct: 290 VYSLIVTATEDSGGFS-TSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLG---TSIL 345
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+V A D D I Y ++ + F ++ + G I
Sbjct: 346 RVKAMDSDSGSNAEIEYLVS----------DDHFAVD-SNGIIV 378
Score = 47.3 bits (113), Expect = 2e-07
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 16 YELTLVASD-----SLNENKTTVVIHIN-DVNDMPPVFN-TSLYPAIMEEELPGPYPHSL 68
Y L + A D ++T ++ P F S I E + +
Sbjct: 182 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD---SDI 238
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ + A DR+ Y L QG G F+I T+G +
Sbjct: 239 ISIKAKSFA-DREIR--YTLKAQG-----QGAGTFNIGPTSGIV 274
Score = 59.2 bits (144), Expect = 9e-12
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 16 YELTLVASDSLNE-----NKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLL 69
Y + + A D TT+ + + DVND PP F SLY + E+ + G ++
Sbjct: 179 YLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLG---TAIG 235
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+V A D D Y + D D G I
Sbjct: 236 RVKANDQDIGENAQSSYDIIDG--DGTALFEITSDAQAQDGVIR 277
Score = 53.5 bits (129), Expect = 8e-10
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y LT A D E + +I + D+ND P F Y A + E + G S+
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG---TSVTN 127
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
V ATD D N +VY + G F I T I
Sbjct: 128 VTATDADDPVYGNSAKLVYSILE--------GQPYFSIEPETAIIK 165
Score = 48.6 bits (116), Expect = 7e-09
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 46 VFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDI 105
V+N + EE GP P L+ L TD D I Y L+G G + F I
Sbjct: 3 VWN----QMFVLEEFSGPEPI-LVGRLHTDLDPG-SKKIKYILSGDGAG------TIFQI 50
Query: 106 NRTTGEIF 113
N TG+I
Sbjct: 51 NDITGDIH 58
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
